Multiple sequence alignment - TraesCS6B01G292100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G292100 chr6B 100.000 3599 0 0 1 3599 525557603 525554005 0.000000e+00 6647.0
1 TraesCS6B01G292100 chr6A 96.173 2038 41 19 749 2771 489511910 489509895 0.000000e+00 3297.0
2 TraesCS6B01G292100 chr6A 89.372 828 42 11 2798 3599 489509828 489509021 0.000000e+00 1000.0
3 TraesCS6B01G292100 chr6A 89.594 567 31 13 1 555 489512736 489512186 0.000000e+00 695.0
4 TraesCS6B01G292100 chr6A 92.462 199 6 3 555 753 489512129 489511940 3.540000e-70 276.0
5 TraesCS6B01G292100 chr6D 95.266 2028 59 18 749 2768 353038521 353040519 0.000000e+00 3179.0
6 TraesCS6B01G292100 chr6D 88.202 534 38 15 1 513 353037703 353038232 6.600000e-172 614.0
7 TraesCS6B01G292100 chr6D 86.184 456 43 15 2907 3358 353040785 353041224 3.250000e-130 475.0
8 TraesCS6B01G292100 chr6D 88.500 200 6 4 555 754 353038310 353038492 3.620000e-55 226.0
9 TraesCS6B01G292100 chr3B 85.294 68 5 5 1 64 194074837 194074771 8.340000e-07 65.8
10 TraesCS6B01G292100 chr3B 94.444 36 1 1 30 64 803778905 803778870 2.000000e-03 54.7
11 TraesCS6B01G292100 chr4B 100.000 32 0 0 27 58 806794 806825 3.880000e-05 60.2
12 TraesCS6B01G292100 chr4B 85.246 61 6 3 1 58 576192259 576192319 3.880000e-05 60.2
13 TraesCS6B01G292100 chr4B 100.000 28 0 0 31 58 399947311 399947338 6.000000e-03 52.8
14 TraesCS6B01G292100 chr4A 100.000 28 0 0 31 58 151952817 151952844 6.000000e-03 52.8
15 TraesCS6B01G292100 chr2B 100.000 28 0 0 31 58 103190412 103190385 6.000000e-03 52.8
16 TraesCS6B01G292100 chr2A 100.000 28 0 0 31 58 66844924 66844897 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G292100 chr6B 525554005 525557603 3598 True 6647.0 6647 100.00000 1 3599 1 chr6B.!!$R1 3598
1 TraesCS6B01G292100 chr6A 489509021 489512736 3715 True 1317.0 3297 91.90025 1 3599 4 chr6A.!!$R1 3598
2 TraesCS6B01G292100 chr6D 353037703 353041224 3521 False 1123.5 3179 89.53800 1 3358 4 chr6D.!!$F1 3357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 671 0.179067 AAACGAGTCCAGCAACCGAA 60.179 50.000 0.0 0.0 0.0 4.30 F
591 672 0.878961 AACGAGTCCAGCAACCGAAC 60.879 55.000 0.0 0.0 0.0 3.95 F
593 674 1.006571 GAGTCCAGCAACCGAACGA 60.007 57.895 0.0 0.0 0.0 3.85 F
647 728 1.072505 GAGTCCAAACCGAGCCCAA 59.927 57.895 0.0 0.0 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 2213 2.268796 TGGACCATTCCTCAGGATGA 57.731 50.000 0.00 0.0 46.23 2.92 R
2243 2392 3.788227 TTGGAGCAGAGTTACCACAAT 57.212 42.857 0.00 0.0 31.87 2.71 R
2260 2409 5.590145 TCGGCATTAACATCATTTCATTGG 58.410 37.500 0.00 0.0 0.00 3.16 R
2676 2826 0.035915 GGAACAGGACTGGAAGAGCC 60.036 60.000 4.14 0.0 37.43 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 111 6.374613 GGGGAAAAGGTCTTAGTAAGTTGATG 59.625 42.308 9.71 0.00 0.00 3.07
118 120 3.896648 AGTAAGTTGATGTTGTTGGCG 57.103 42.857 0.00 0.00 0.00 5.69
141 154 4.623932 AGCAGTCTTGTCACCAAAGATA 57.376 40.909 0.00 0.00 0.00 1.98
270 283 3.344515 GGTGACCTCATAAACTGGAACC 58.655 50.000 0.00 0.00 0.00 3.62
297 310 4.446889 GGAGTATTGAATGAGGCAGGGAAT 60.447 45.833 0.00 0.00 0.00 3.01
299 312 2.905415 TTGAATGAGGCAGGGAATGT 57.095 45.000 0.00 0.00 0.00 2.71
314 328 6.404734 GCAGGGAATGTAACTGAAAATGTAGG 60.405 42.308 0.00 0.00 0.00 3.18
319 333 5.794687 TGTAACTGAAAATGTAGGCATCG 57.205 39.130 0.00 0.00 33.50 3.84
332 346 1.134098 AGGCATCGAATGGGTAACTGG 60.134 52.381 0.00 0.00 0.00 4.00
388 402 5.678107 GCAATAAACATCTTCTGCCTTCTGG 60.678 44.000 0.00 0.00 0.00 3.86
468 490 1.378250 GCAACCAGCAGGAGCAGAT 60.378 57.895 0.35 0.00 45.49 2.90
469 491 1.654954 GCAACCAGCAGGAGCAGATG 61.655 60.000 0.35 0.00 45.49 2.90
576 657 4.993029 AACATTTCCCAAGTTCAAACGA 57.007 36.364 0.00 0.00 0.00 3.85
590 671 0.179067 AAACGAGTCCAGCAACCGAA 60.179 50.000 0.00 0.00 0.00 4.30
591 672 0.878961 AACGAGTCCAGCAACCGAAC 60.879 55.000 0.00 0.00 0.00 3.95
592 673 2.372690 CGAGTCCAGCAACCGAACG 61.373 63.158 0.00 0.00 0.00 3.95
593 674 1.006571 GAGTCCAGCAACCGAACGA 60.007 57.895 0.00 0.00 0.00 3.85
597 678 2.317609 CCAGCAACCGAACGAGGTG 61.318 63.158 0.00 1.86 45.21 4.00
642 723 1.446272 GCCGAGAGTCCAAACCGAG 60.446 63.158 0.00 0.00 0.00 4.63
643 724 1.446272 CCGAGAGTCCAAACCGAGC 60.446 63.158 0.00 0.00 0.00 5.03
644 725 1.446272 CGAGAGTCCAAACCGAGCC 60.446 63.158 0.00 0.00 0.00 4.70
645 726 1.079057 GAGAGTCCAAACCGAGCCC 60.079 63.158 0.00 0.00 0.00 5.19
646 727 1.827399 GAGAGTCCAAACCGAGCCCA 61.827 60.000 0.00 0.00 0.00 5.36
647 728 1.072505 GAGTCCAAACCGAGCCCAA 59.927 57.895 0.00 0.00 0.00 4.12
925 1044 2.083774 CGGTGAGAAGCCATTAAAGCA 58.916 47.619 3.94 0.00 0.00 3.91
1562 1696 2.690510 GCTCCCTTCCCTCTGCCT 60.691 66.667 0.00 0.00 0.00 4.75
1983 2132 8.195436 CCCTGGTGTATTGAGGTATATTATACG 58.805 40.741 7.56 0.00 0.00 3.06
2064 2213 9.374838 GATGTGGATAATTTGAAGCAATTTTCT 57.625 29.630 0.00 0.00 0.00 2.52
2109 2258 1.374758 GCTGGACAAGGTGAGACGG 60.375 63.158 0.00 0.00 0.00 4.79
2217 2366 1.092348 TGTCGGTCGTGGTGAGATAG 58.908 55.000 0.00 0.00 0.00 2.08
2222 2371 2.876550 CGGTCGTGGTGAGATAGACATA 59.123 50.000 0.00 0.00 33.84 2.29
2260 2409 6.452494 TCTACTATTGTGGTAACTCTGCTC 57.548 41.667 0.00 0.00 37.61 4.26
2606 2755 0.387929 GCCACTGCATGATGGAATGG 59.612 55.000 10.17 10.17 38.34 3.16
2676 2826 1.085091 GCTTGCCTGTCATCAGTGAG 58.915 55.000 0.00 0.00 39.82 3.51
2737 2888 1.074752 GTCACAGAGCTGCTAACTGC 58.925 55.000 15.84 0.00 40.80 4.40
2768 2919 3.609853 TCATTGCCGAGCTTCATTTAGT 58.390 40.909 0.00 0.00 0.00 2.24
2792 2960 8.638873 AGTTTTGAAAATTTCCTAATTCTCGGT 58.361 29.630 3.00 0.00 32.85 4.69
2793 2961 8.699749 GTTTTGAAAATTTCCTAATTCTCGGTG 58.300 33.333 3.00 0.00 32.85 4.94
2884 3111 4.166725 TGGATCTGTTTGGCCTAGATGAAT 59.833 41.667 3.32 0.00 31.67 2.57
2917 3196 5.120399 TGGTATAATTTGTAAGGCACCTCG 58.880 41.667 0.00 0.00 0.00 4.63
2978 3257 8.389603 AGTTGTTTGAACTTGTTTATTTGCATG 58.610 29.630 0.00 0.00 0.00 4.06
3075 3371 4.345257 TCATATTCTCTTGGTGACTAGCCC 59.655 45.833 0.00 0.00 32.87 5.19
3106 3402 3.305950 GCTAGATGCACAGGAGGATGTAG 60.306 52.174 0.00 0.00 42.31 2.74
3108 3404 2.964464 AGATGCACAGGAGGATGTAGAG 59.036 50.000 0.00 0.00 0.00 2.43
3246 3543 7.480810 ACTTTTATCTGAAATTTATCCACGCC 58.519 34.615 0.00 0.00 0.00 5.68
3332 3629 7.664731 TGGTGCAAATGGTATGATTTTTCATTT 59.335 29.630 0.00 0.00 38.20 2.32
3350 3647 2.054140 TTTTCGTCAACAGGCCACGC 62.054 55.000 5.01 0.00 33.46 5.34
3358 3655 2.125552 CAGGCCACGCGAGAATCA 60.126 61.111 15.93 0.00 33.17 2.57
3362 3659 2.125552 CCACGCGAGAATCAGCCA 60.126 61.111 15.93 0.00 32.45 4.75
3370 3667 1.202463 CGAGAATCAGCCAGAACCGAT 60.202 52.381 0.00 0.00 33.17 4.18
3372 3669 3.274288 GAGAATCAGCCAGAACCGATTT 58.726 45.455 0.00 0.00 33.17 2.17
3373 3670 4.442706 GAGAATCAGCCAGAACCGATTTA 58.557 43.478 0.00 0.00 33.17 1.40
3374 3671 5.041191 AGAATCAGCCAGAACCGATTTAT 57.959 39.130 0.00 0.00 0.00 1.40
3375 3672 6.174720 AGAATCAGCCAGAACCGATTTATA 57.825 37.500 0.00 0.00 0.00 0.98
3377 3674 4.746535 TCAGCCAGAACCGATTTATACA 57.253 40.909 0.00 0.00 0.00 2.29
3378 3675 5.290493 TCAGCCAGAACCGATTTATACAT 57.710 39.130 0.00 0.00 0.00 2.29
3379 3676 6.413783 TCAGCCAGAACCGATTTATACATA 57.586 37.500 0.00 0.00 0.00 2.29
3419 3716 9.416284 AGGTTGAAAGGTTTACTTCAAGAAATA 57.584 29.630 0.00 0.00 38.85 1.40
3460 3757 1.152096 AACCCAGAGTTCCGGGACT 60.152 57.895 17.69 17.69 46.34 3.85
3461 3758 1.481056 AACCCAGAGTTCCGGGACTG 61.481 60.000 23.57 8.46 46.34 3.51
3463 3760 1.592223 CCAGAGTTCCGGGACTGAC 59.408 63.158 23.57 6.83 32.90 3.51
3464 3761 0.900647 CCAGAGTTCCGGGACTGACT 60.901 60.000 23.57 9.56 32.90 3.41
3530 3834 4.392138 CCTAACAAAGCCCGAAGTAGAAAG 59.608 45.833 0.00 0.00 0.00 2.62
3537 3841 2.108970 CCCGAAGTAGAAAGCCTAGGT 58.891 52.381 11.31 0.00 0.00 3.08
3540 3844 2.223525 CGAAGTAGAAAGCCTAGGTCCG 60.224 54.545 11.31 0.00 0.00 4.79
3542 3846 1.006878 AGTAGAAAGCCTAGGTCCGGT 59.993 52.381 11.31 0.00 0.00 5.28
3543 3847 1.408340 GTAGAAAGCCTAGGTCCGGTC 59.592 57.143 11.31 0.00 0.00 4.79
3575 3879 4.986467 CCGCCAGGGCTAGAATTT 57.014 55.556 8.91 0.00 39.32 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.653647 TCAAAATATAAGACGTTTTTGCAGGT 58.346 30.769 13.47 0.00 38.38 4.00
64 65 6.578023 TCCCCACAAAAGAACAAATAACTTG 58.422 36.000 0.00 0.00 41.19 3.16
74 76 3.704566 AGACCTTTTCCCCACAAAAGAAC 59.295 43.478 7.16 2.14 43.41 3.01
109 111 1.069906 CAAGACTGCTACGCCAACAAC 60.070 52.381 0.00 0.00 0.00 3.32
166 179 7.667219 ACTTCAAAGTCATACCATCAGAAACAT 59.333 33.333 0.00 0.00 32.86 2.71
204 217 8.593679 TGACCATGAATTAGACCGATAACATAT 58.406 33.333 0.00 0.00 0.00 1.78
257 270 2.009774 CTCCTGCGGTTCCAGTTTATG 58.990 52.381 0.00 0.00 0.00 1.90
270 283 1.869767 GCCTCATTCAATACTCCTGCG 59.130 52.381 0.00 0.00 0.00 5.18
278 291 4.524802 ACATTCCCTGCCTCATTCAATA 57.475 40.909 0.00 0.00 0.00 1.90
297 310 5.483811 TCGATGCCTACATTTTCAGTTACA 58.516 37.500 0.00 0.00 36.35 2.41
299 312 6.038161 CCATTCGATGCCTACATTTTCAGTTA 59.962 38.462 0.00 0.00 36.35 2.24
314 328 1.670811 CACCAGTTACCCATTCGATGC 59.329 52.381 0.00 0.00 0.00 3.91
319 333 1.917872 TTGCCACCAGTTACCCATTC 58.082 50.000 0.00 0.00 0.00 2.67
332 346 4.002982 TGACAGAGATACAACATTGCCAC 58.997 43.478 0.00 0.00 0.00 5.01
388 402 1.796796 GTGGAGTCAATTCTGCCGC 59.203 57.895 0.00 0.00 0.00 6.53
457 479 2.372264 TGAAAATCCATCTGCTCCTGC 58.628 47.619 0.00 0.00 40.20 4.85
468 490 4.343814 GGGTCCTTGAACTTTGAAAATCCA 59.656 41.667 0.00 0.00 0.00 3.41
469 491 4.262463 GGGGTCCTTGAACTTTGAAAATCC 60.262 45.833 0.00 0.00 0.00 3.01
500 523 2.036604 AGTTTTACAAAATGCCACCCCG 59.963 45.455 0.00 0.00 0.00 5.73
535 558 5.636123 TGTTAACCTCCCTGCAGATTTAAA 58.364 37.500 17.39 0.00 0.00 1.52
538 561 3.806949 TGTTAACCTCCCTGCAGATTT 57.193 42.857 17.39 2.99 0.00 2.17
542 565 2.755103 GGAAATGTTAACCTCCCTGCAG 59.245 50.000 6.78 6.78 0.00 4.41
576 657 1.006102 CTCGTTCGGTTGCTGGACT 60.006 57.895 0.00 0.00 0.00 3.85
590 671 1.215647 GATCACGAAGCCACCTCGT 59.784 57.895 0.00 0.00 41.01 4.18
591 672 1.519455 GGATCACGAAGCCACCTCG 60.519 63.158 0.00 0.00 0.00 4.63
592 673 0.460987 CTGGATCACGAAGCCACCTC 60.461 60.000 0.00 0.00 0.00 3.85
593 674 1.599047 CTGGATCACGAAGCCACCT 59.401 57.895 0.00 0.00 0.00 4.00
597 678 0.460987 CTCACCTGGATCACGAAGCC 60.461 60.000 0.00 0.00 0.00 4.35
627 708 1.079057 GGGCTCGGTTTGGACTCTC 60.079 63.158 0.00 0.00 0.00 3.20
642 723 1.176619 ACGCTAGTTTTGGGTTGGGC 61.177 55.000 0.00 0.00 0.00 5.36
643 724 0.879090 GACGCTAGTTTTGGGTTGGG 59.121 55.000 0.00 0.00 0.00 4.12
644 725 0.879090 GGACGCTAGTTTTGGGTTGG 59.121 55.000 0.00 0.00 0.00 3.77
645 726 1.600023 TGGACGCTAGTTTTGGGTTG 58.400 50.000 0.00 0.00 0.00 3.77
646 727 2.351706 TTGGACGCTAGTTTTGGGTT 57.648 45.000 0.00 0.00 0.00 4.11
647 728 2.351706 TTTGGACGCTAGTTTTGGGT 57.648 45.000 0.00 0.00 0.00 4.51
721 802 5.295787 GCGGAGAAATTTCCCTTTTGTTTTT 59.704 36.000 14.61 0.00 33.46 1.94
907 1026 2.159324 GGCTGCTTTAATGGCTTCTCAC 60.159 50.000 0.00 0.00 0.00 3.51
908 1027 2.094675 GGCTGCTTTAATGGCTTCTCA 58.905 47.619 0.00 0.00 0.00 3.27
1474 1608 2.784654 CGAGGAGGGAGGGAGGGAT 61.785 68.421 0.00 0.00 0.00 3.85
1562 1696 4.779733 GGGAGAGGCGGGTGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
2044 2193 9.813446 AGGATGAGAAAATTGCTTCAAATTATC 57.187 29.630 0.00 0.00 0.00 1.75
2064 2213 2.268796 TGGACCATTCCTCAGGATGA 57.731 50.000 0.00 0.00 46.23 2.92
2109 2258 4.645535 TCCTCTCTATTATGCATGCCAAC 58.354 43.478 16.68 0.00 0.00 3.77
2243 2392 3.788227 TTGGAGCAGAGTTACCACAAT 57.212 42.857 0.00 0.00 31.87 2.71
2260 2409 5.590145 TCGGCATTAACATCATTTCATTGG 58.410 37.500 0.00 0.00 0.00 3.16
2676 2826 0.035915 GGAACAGGACTGGAAGAGCC 60.036 60.000 4.14 0.00 37.43 4.70
2737 2888 4.685924 AGCTCGGCAATGAATTAAAATGG 58.314 39.130 0.00 0.00 0.00 3.16
2768 2919 8.634444 TCACCGAGAATTAGGAAATTTTCAAAA 58.366 29.630 11.09 4.97 36.47 2.44
2789 2957 3.314080 TCCAACAAAGCTAAAGTTCACCG 59.686 43.478 0.00 0.00 0.00 4.94
2790 2958 4.911514 TCCAACAAAGCTAAAGTTCACC 57.088 40.909 0.00 0.00 0.00 4.02
2792 2960 6.995686 TCTGTATCCAACAAAGCTAAAGTTCA 59.004 34.615 0.00 0.00 37.74 3.18
2793 2961 7.435068 TCTGTATCCAACAAAGCTAAAGTTC 57.565 36.000 0.00 0.00 37.74 3.01
2833 3041 6.560251 GCAACACGCTTCTTCAAATTAACTTG 60.560 38.462 0.00 0.00 37.77 3.16
2917 3196 2.362077 ACCAAGAACACAATGCTGGTTC 59.638 45.455 5.31 5.31 40.84 3.62
2978 3257 6.497437 TGTGCATCAAACATAAGACATATGC 58.503 36.000 1.58 0.00 44.46 3.14
3048 3344 6.073331 GCTAGTCACCAAGAGAATATGAATGC 60.073 42.308 0.00 0.00 0.00 3.56
3106 3402 2.098770 GCTGGATGCCATCAAACTTCTC 59.901 50.000 7.06 0.00 35.15 2.87
3108 3404 2.097825 AGCTGGATGCCATCAAACTTC 58.902 47.619 7.06 0.00 44.23 3.01
3153 3449 5.366460 ACATTTCTGGAGCTGATATGACAG 58.634 41.667 9.09 0.00 40.43 3.51
3257 3554 9.690913 TGAAGAAATGAATTCCAGATATCAAGT 57.309 29.630 5.32 0.00 38.94 3.16
3307 3604 7.614124 AATGAAAAATCATACCATTTGCACC 57.386 32.000 0.00 0.00 0.00 5.01
3310 3607 9.264782 CGAAAAATGAAAAATCATACCATTTGC 57.735 29.630 0.00 0.00 37.47 3.68
3332 3629 2.539338 GCGTGGCCTGTTGACGAAA 61.539 57.895 16.01 0.00 35.05 3.46
3350 3647 0.173481 TCGGTTCTGGCTGATTCTCG 59.827 55.000 0.00 0.00 0.00 4.04
3358 3655 6.706270 CAGTTATGTATAAATCGGTTCTGGCT 59.294 38.462 0.00 0.00 0.00 4.75
3372 3669 9.996554 CAACCTGTTGGATATCAGTTATGTATA 57.003 33.333 4.83 0.00 36.95 1.47
3373 3670 8.713971 TCAACCTGTTGGATATCAGTTATGTAT 58.286 33.333 9.94 0.00 40.78 2.29
3374 3671 8.084985 TCAACCTGTTGGATATCAGTTATGTA 57.915 34.615 9.94 0.00 40.78 2.29
3375 3672 6.957631 TCAACCTGTTGGATATCAGTTATGT 58.042 36.000 9.94 0.00 40.78 2.29
3377 3674 7.557719 CCTTTCAACCTGTTGGATATCAGTTAT 59.442 37.037 9.94 0.00 40.78 1.89
3378 3675 6.884295 CCTTTCAACCTGTTGGATATCAGTTA 59.116 38.462 9.94 0.00 40.78 2.24
3379 3676 5.711976 CCTTTCAACCTGTTGGATATCAGTT 59.288 40.000 9.94 0.00 40.78 3.16
3388 3685 5.126384 TGAAGTAAACCTTTCAACCTGTTGG 59.874 40.000 9.94 0.00 35.95 3.77
3432 3729 4.278419 CGGAACTCTGGGTTGAAGATTTTT 59.722 41.667 0.00 0.00 38.41 1.94
3433 3730 3.821033 CGGAACTCTGGGTTGAAGATTTT 59.179 43.478 0.00 0.00 38.41 1.82
3434 3731 3.412386 CGGAACTCTGGGTTGAAGATTT 58.588 45.455 0.00 0.00 38.41 2.17
3435 3732 2.290323 CCGGAACTCTGGGTTGAAGATT 60.290 50.000 0.00 0.00 38.41 2.40
3436 3733 1.279271 CCGGAACTCTGGGTTGAAGAT 59.721 52.381 0.00 0.00 38.41 2.40
3445 3742 0.900647 AGTCAGTCCCGGAACTCTGG 60.901 60.000 0.73 0.00 42.13 3.86
3460 3757 3.096852 CGGATGGCCAGGTATATAGTCA 58.903 50.000 13.05 0.00 0.00 3.41
3461 3758 3.097614 ACGGATGGCCAGGTATATAGTC 58.902 50.000 13.05 0.00 0.00 2.59
3463 3760 2.099263 CGACGGATGGCCAGGTATATAG 59.901 54.545 13.05 0.00 0.00 1.31
3464 3761 2.097036 CGACGGATGGCCAGGTATATA 58.903 52.381 13.05 0.00 0.00 0.86
3561 3865 2.278332 GGCCTAAATTCTAGCCCTGG 57.722 55.000 0.00 0.00 39.60 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.