Multiple sequence alignment - TraesCS6B01G291400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G291400 chr6B 100.000 3622 0 0 1 3622 524066016 524062395 0.000000e+00 6689.0
1 TraesCS6B01G291400 chr6D 90.800 2663 115 59 921 3506 354222898 354225507 0.000000e+00 3441.0
2 TraesCS6B01G291400 chr6A 89.065 2396 109 57 921 3223 488063321 488060986 0.000000e+00 2832.0
3 TraesCS6B01G291400 chr6A 91.309 932 69 5 1 922 23969406 23970335 0.000000e+00 1262.0
4 TraesCS6B01G291400 chr6A 100.000 32 0 0 3226 3257 488060966 488060935 3.910000e-05 60.2
5 TraesCS6B01G291400 chr5A 92.537 938 50 13 1 923 502600589 502599657 0.000000e+00 1327.0
6 TraesCS6B01G291400 chr5A 91.747 933 55 10 1 923 666958878 666957958 0.000000e+00 1277.0
7 TraesCS6B01G291400 chr5A 87.975 948 63 21 1 928 564584889 564583973 0.000000e+00 1072.0
8 TraesCS6B01G291400 chr5A 91.099 191 6 4 1 182 77332573 77332761 7.770000e-62 248.0
9 TraesCS6B01G291400 chr1A 92.471 943 48 12 1 927 451856183 451855248 0.000000e+00 1327.0
10 TraesCS6B01G291400 chr2B 91.702 940 60 6 1 923 393458261 393457323 0.000000e+00 1288.0
11 TraesCS6B01G291400 chr2B 87.793 213 22 4 1200 1410 664933393 664933603 2.790000e-61 246.0
12 TraesCS6B01G291400 chr2B 84.932 219 23 6 1897 2113 664934308 664934518 2.830000e-51 213.0
13 TraesCS6B01G291400 chr7A 91.480 939 59 9 1 923 198229601 198228668 0.000000e+00 1271.0
14 TraesCS6B01G291400 chr7A 89.429 700 42 9 1 671 31585633 31584937 0.000000e+00 854.0
15 TraesCS6B01G291400 chr7A 88.256 281 16 6 1 266 21753455 21753177 1.620000e-83 320.0
16 TraesCS6B01G291400 chr7A 82.960 223 36 2 1528 1749 573097002 573096781 2.210000e-47 200.0
17 TraesCS6B01G291400 chr7A 90.323 124 6 3 2610 2727 288910814 288910691 1.350000e-34 158.0
18 TraesCS6B01G291400 chr3A 91.277 940 60 10 1 922 729745494 729744559 0.000000e+00 1262.0
19 TraesCS6B01G291400 chr2A 91.328 934 65 9 1 920 10219350 10220281 0.000000e+00 1262.0
20 TraesCS6B01G291400 chr2A 87.324 213 23 4 1200 1410 697289554 697289764 1.300000e-59 241.0
21 TraesCS6B01G291400 chr3B 91.053 950 52 14 1 925 59206182 59205241 0.000000e+00 1253.0
22 TraesCS6B01G291400 chr1B 90.373 966 52 13 1 926 626132020 626131056 0.000000e+00 1230.0
23 TraesCS6B01G291400 chr1B 89.760 957 61 13 1 922 685678795 685677841 0.000000e+00 1190.0
24 TraesCS6B01G291400 chr1B 89.315 964 56 20 1 923 640422293 640421336 0.000000e+00 1166.0
25 TraesCS6B01G291400 chr1B 93.156 526 28 1 1 518 522766041 522765516 0.000000e+00 765.0
26 TraesCS6B01G291400 chr2D 92.511 227 17 0 1528 1754 557258876 557259102 3.490000e-85 326.0
27 TraesCS6B01G291400 chr2D 88.732 213 20 4 1200 1410 557258358 557258568 1.290000e-64 257.0
28 TraesCS6B01G291400 chr2D 86.161 224 21 6 1897 2118 557259289 557259504 2.170000e-57 233.0
29 TraesCS6B01G291400 chr7D 82.511 223 39 0 1528 1750 505603597 505603375 2.850000e-46 196.0
30 TraesCS6B01G291400 chr7B 82.589 224 37 2 1528 1750 533570540 533570318 2.850000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G291400 chr6B 524062395 524066016 3621 True 6689.0 6689 100.000000 1 3622 1 chr6B.!!$R1 3621
1 TraesCS6B01G291400 chr6D 354222898 354225507 2609 False 3441.0 3441 90.800000 921 3506 1 chr6D.!!$F1 2585
2 TraesCS6B01G291400 chr6A 488060935 488063321 2386 True 1446.1 2832 94.532500 921 3257 2 chr6A.!!$R1 2336
3 TraesCS6B01G291400 chr6A 23969406 23970335 929 False 1262.0 1262 91.309000 1 922 1 chr6A.!!$F1 921
4 TraesCS6B01G291400 chr5A 502599657 502600589 932 True 1327.0 1327 92.537000 1 923 1 chr5A.!!$R1 922
5 TraesCS6B01G291400 chr5A 666957958 666958878 920 True 1277.0 1277 91.747000 1 923 1 chr5A.!!$R3 922
6 TraesCS6B01G291400 chr5A 564583973 564584889 916 True 1072.0 1072 87.975000 1 928 1 chr5A.!!$R2 927
7 TraesCS6B01G291400 chr1A 451855248 451856183 935 True 1327.0 1327 92.471000 1 927 1 chr1A.!!$R1 926
8 TraesCS6B01G291400 chr2B 393457323 393458261 938 True 1288.0 1288 91.702000 1 923 1 chr2B.!!$R1 922
9 TraesCS6B01G291400 chr2B 664933393 664934518 1125 False 229.5 246 86.362500 1200 2113 2 chr2B.!!$F1 913
10 TraesCS6B01G291400 chr7A 198228668 198229601 933 True 1271.0 1271 91.480000 1 923 1 chr7A.!!$R3 922
11 TraesCS6B01G291400 chr7A 31584937 31585633 696 True 854.0 854 89.429000 1 671 1 chr7A.!!$R2 670
12 TraesCS6B01G291400 chr3A 729744559 729745494 935 True 1262.0 1262 91.277000 1 922 1 chr3A.!!$R1 921
13 TraesCS6B01G291400 chr2A 10219350 10220281 931 False 1262.0 1262 91.328000 1 920 1 chr2A.!!$F1 919
14 TraesCS6B01G291400 chr3B 59205241 59206182 941 True 1253.0 1253 91.053000 1 925 1 chr3B.!!$R1 924
15 TraesCS6B01G291400 chr1B 626131056 626132020 964 True 1230.0 1230 90.373000 1 926 1 chr1B.!!$R2 925
16 TraesCS6B01G291400 chr1B 685677841 685678795 954 True 1190.0 1190 89.760000 1 922 1 chr1B.!!$R4 921
17 TraesCS6B01G291400 chr1B 640421336 640422293 957 True 1166.0 1166 89.315000 1 923 1 chr1B.!!$R3 922
18 TraesCS6B01G291400 chr1B 522765516 522766041 525 True 765.0 765 93.156000 1 518 1 chr1B.!!$R1 517
19 TraesCS6B01G291400 chr2D 557258358 557259504 1146 False 272.0 326 89.134667 1200 2118 3 chr2D.!!$F1 918

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 890 0.736053 TTTGAGTCGTTTTTGCGCCT 59.264 45.0 4.18 0.0 0.0 5.52 F
1496 1896 0.107410 TGCTGGTTTTCGTGGTGACT 60.107 50.0 0.00 0.0 0.0 3.41 F
1497 1897 0.307760 GCTGGTTTTCGTGGTGACTG 59.692 55.0 0.00 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 2296 0.172578 CGGACGTGCCTACAATCTGA 59.827 55.0 0.00 0.0 0.00 3.27 R
2619 3156 0.251386 AGAGGACTGGCTCGAGTGAA 60.251 55.0 15.13 0.0 0.00 3.18 R
3412 4001 0.376152 GCAAGTGGCATCATCGAGTG 59.624 55.0 0.00 0.0 43.97 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 116 4.453892 CGAGTACCCCGACCCCCT 62.454 72.222 0.00 0.00 0.00 4.79
177 190 2.684735 GGGTCCTCCTCCTCGTCT 59.315 66.667 0.00 0.00 0.00 4.18
178 191 1.643475 GGGGTCCTCCTCCTCGTCTA 61.643 65.000 0.00 0.00 35.33 2.59
208 233 1.821061 CTGCCTCTGTCCCGTCAAGT 61.821 60.000 0.00 0.00 0.00 3.16
702 798 2.762875 GGGGTAGCCTGCGGTAGT 60.763 66.667 11.48 0.00 0.00 2.73
784 890 0.736053 TTTGAGTCGTTTTTGCGCCT 59.264 45.000 4.18 0.00 0.00 5.52
826 936 3.390183 TAGGACGCCGCGACTAGGA 62.390 63.158 21.79 0.00 0.00 2.94
933 1044 1.376037 GCCCTAAGACACAAGCGCT 60.376 57.895 2.64 2.64 0.00 5.92
957 1068 1.900486 CTACTTTTCCTCCACCTCGGT 59.100 52.381 0.00 0.00 35.57 4.69
1029 1140 4.095400 TCTCCCCTCCCCTGCTCC 62.095 72.222 0.00 0.00 0.00 4.70
1192 1351 0.109597 CCGGACTGAAACTGCAATGC 60.110 55.000 0.00 0.00 0.00 3.56
1417 1579 1.451028 GCCATCCAGGTCAGTCAGC 60.451 63.158 0.00 0.00 40.61 4.26
1487 1887 3.309682 TCGATCGATTCATGCTGGTTTTC 59.690 43.478 15.15 0.00 0.00 2.29
1488 1888 3.611517 GATCGATTCATGCTGGTTTTCG 58.388 45.455 0.00 0.00 0.00 3.46
1490 1890 2.159430 TCGATTCATGCTGGTTTTCGTG 59.841 45.455 0.00 0.00 0.00 4.35
1492 1892 1.686355 TTCATGCTGGTTTTCGTGGT 58.314 45.000 0.00 0.00 0.00 4.16
1493 1893 0.950836 TCATGCTGGTTTTCGTGGTG 59.049 50.000 0.00 0.00 0.00 4.17
1494 1894 0.950836 CATGCTGGTTTTCGTGGTGA 59.049 50.000 0.00 0.00 0.00 4.02
1496 1896 0.107410 TGCTGGTTTTCGTGGTGACT 60.107 50.000 0.00 0.00 0.00 3.41
1497 1897 0.307760 GCTGGTTTTCGTGGTGACTG 59.692 55.000 0.00 0.00 0.00 3.51
1498 1898 1.948104 CTGGTTTTCGTGGTGACTGA 58.052 50.000 0.00 0.00 0.00 3.41
1502 1902 3.074412 GGTTTTCGTGGTGACTGATGAT 58.926 45.455 0.00 0.00 0.00 2.45
1503 1903 3.120199 GGTTTTCGTGGTGACTGATGATG 60.120 47.826 0.00 0.00 0.00 3.07
1504 1904 1.725641 TTCGTGGTGACTGATGATGC 58.274 50.000 0.00 0.00 0.00 3.91
1505 1905 0.458370 TCGTGGTGACTGATGATGCG 60.458 55.000 0.00 0.00 0.00 4.73
1506 1906 0.737367 CGTGGTGACTGATGATGCGT 60.737 55.000 0.00 0.00 0.00 5.24
1507 1907 1.469079 CGTGGTGACTGATGATGCGTA 60.469 52.381 0.00 0.00 0.00 4.42
1508 1908 2.799562 CGTGGTGACTGATGATGCGTAT 60.800 50.000 0.00 0.00 0.00 3.06
1509 1909 2.541346 GTGGTGACTGATGATGCGTATG 59.459 50.000 0.00 0.00 0.00 2.39
1522 1922 4.553101 GTATGCACGAACGGCGCG 62.553 66.667 6.90 0.00 46.04 6.86
1780 2180 5.474876 CAGTTCTCCTTACAATCCAAGCTTT 59.525 40.000 0.00 0.00 0.00 3.51
1828 2228 1.740025 GTAACCAGCACTGCATCTTCC 59.260 52.381 3.30 0.00 0.00 3.46
1832 2232 1.077930 AGCACTGCATCTTCCGCAT 60.078 52.632 3.30 0.00 39.02 4.73
1833 2233 1.063649 GCACTGCATCTTCCGCATG 59.936 57.895 0.00 0.00 39.02 4.06
1834 2234 1.063649 CACTGCATCTTCCGCATGC 59.936 57.895 7.91 7.91 45.92 4.06
1835 2235 1.077930 ACTGCATCTTCCGCATGCT 60.078 52.632 17.13 0.00 45.90 3.79
1838 2296 1.525535 GCATCTTCCGCATGCTCCT 60.526 57.895 17.13 0.00 42.95 3.69
1885 2343 2.815647 GCCGAGGAAGAAGCACGG 60.816 66.667 0.00 0.00 45.26 4.94
1887 2345 3.181967 CGAGGAAGAAGCACGGCG 61.182 66.667 4.80 4.80 0.00 6.46
1888 2346 2.815647 GAGGAAGAAGCACGGCGG 60.816 66.667 13.24 0.66 0.00 6.13
2181 2651 1.135489 ACTGTACACGTGACATAGCCG 60.135 52.381 25.01 11.59 0.00 5.52
2278 2757 4.992381 ATAGCGTGTGACTTTCAGTTTC 57.008 40.909 0.00 0.00 0.00 2.78
2355 2844 6.237901 TGTAAGTAACTTGCAACTCCATGAT 58.762 36.000 0.00 0.00 33.52 2.45
2377 2866 8.710835 TGATGACGACTAAGTTTTGCAATATA 57.289 30.769 0.00 0.00 0.00 0.86
2378 2867 8.600625 TGATGACGACTAAGTTTTGCAATATAC 58.399 33.333 0.00 0.00 0.00 1.47
2379 2868 8.718102 ATGACGACTAAGTTTTGCAATATACT 57.282 30.769 0.00 1.56 0.00 2.12
2380 2869 7.959733 TGACGACTAAGTTTTGCAATATACTG 58.040 34.615 0.00 0.00 0.00 2.74
2381 2870 6.772078 ACGACTAAGTTTTGCAATATACTGC 58.228 36.000 0.00 0.00 42.95 4.40
2382 2871 6.594159 ACGACTAAGTTTTGCAATATACTGCT 59.406 34.615 7.78 0.00 43.07 4.24
2383 2872 7.762615 ACGACTAAGTTTTGCAATATACTGCTA 59.237 33.333 7.78 0.00 43.07 3.49
2384 2873 8.765219 CGACTAAGTTTTGCAATATACTGCTAT 58.235 33.333 7.78 0.00 43.07 2.97
2385 2874 9.869844 GACTAAGTTTTGCAATATACTGCTATG 57.130 33.333 7.78 0.00 43.07 2.23
2386 2875 9.613428 ACTAAGTTTTGCAATATACTGCTATGA 57.387 29.630 7.78 0.00 43.07 2.15
2446 2952 8.526978 ACTAGATCGTAAATGTGCATAGATGAT 58.473 33.333 0.00 0.00 0.00 2.45
2447 2953 7.592439 AGATCGTAAATGTGCATAGATGATG 57.408 36.000 0.00 0.00 38.73 3.07
2493 3010 3.325753 GGAGCAGGAGGCCAGTGT 61.326 66.667 5.01 0.00 46.50 3.55
2516 3038 1.222300 GGTGTTCATGTACGTGCACA 58.778 50.000 18.64 15.34 0.00 4.57
2619 3156 2.573369 GCTGAGTGGCTCATCATTCAT 58.427 47.619 0.00 0.00 39.92 2.57
2752 3293 2.028130 CTCCGTCTGAGGTTGCTAGAT 58.972 52.381 0.00 0.00 37.45 1.98
2844 3396 1.123928 CGGTAGCTTCTGGAAGGGAT 58.876 55.000 11.61 0.00 38.80 3.85
2945 3497 1.153449 CGCCGCCTAACTTGATGGA 60.153 57.895 0.00 0.00 0.00 3.41
3039 3591 1.756408 TTACTTTCCACCGGTCGCCA 61.756 55.000 2.59 0.00 0.00 5.69
3116 3671 4.767255 GACCGGGTCCTGCTGCTG 62.767 72.222 16.55 0.00 0.00 4.41
3132 3687 3.947132 CTGCTGGCGAGTGGGAGTG 62.947 68.421 0.00 0.00 0.00 3.51
3153 3724 2.573915 GGGGAGAGGATCAAGTTCAAGT 59.426 50.000 0.00 0.00 37.82 3.16
3223 3794 0.031585 CGTCTTCGTCTTGGGTGACA 59.968 55.000 0.00 0.00 36.82 3.58
3224 3795 1.784525 GTCTTCGTCTTGGGTGACAG 58.215 55.000 0.00 0.00 36.82 3.51
3281 3870 3.872728 TCGAGCCACGTCGATCGG 61.873 66.667 20.05 2.52 43.91 4.18
3282 3871 3.872728 CGAGCCACGTCGATCGGA 61.873 66.667 13.08 0.00 42.85 4.55
3283 3872 2.024871 GAGCCACGTCGATCGGAG 59.975 66.667 16.41 11.98 44.69 4.63
3284 3873 3.471244 GAGCCACGTCGATCGGAGG 62.471 68.421 16.41 12.74 44.69 4.30
3286 3875 3.822192 CCACGTCGATCGGAGGCA 61.822 66.667 16.41 0.00 44.69 4.75
3287 3876 2.278206 CACGTCGATCGGAGGCAG 60.278 66.667 16.41 3.33 44.69 4.85
3300 3889 4.828925 GGCAGGACCTGAGAGCGC 62.829 72.222 26.25 8.24 32.44 5.92
3390 3979 1.184970 CCATTGGCCGGTTCCAGTTT 61.185 55.000 1.90 0.00 37.44 2.66
3399 3988 3.735591 CCGGTTCCAGTTTTCTTCACTA 58.264 45.455 0.00 0.00 0.00 2.74
3408 3997 2.060326 TTTCTTCACTAGACACGCGG 57.940 50.000 12.47 1.27 30.90 6.46
3418 4007 3.588906 ACACGCGGTGTCACTCGA 61.589 61.111 12.47 0.00 43.92 4.04
3419 4008 2.126463 CACGCGGTGTCACTCGAT 60.126 61.111 12.47 5.59 0.00 3.59
3420 4009 2.126463 ACGCGGTGTCACTCGATG 60.126 61.111 12.47 12.23 0.00 3.84
3421 4010 2.178273 CGCGGTGTCACTCGATGA 59.822 61.111 15.29 0.00 33.79 2.92
3422 4011 1.226688 CGCGGTGTCACTCGATGAT 60.227 57.895 15.29 0.00 40.28 2.45
3423 4012 1.474648 CGCGGTGTCACTCGATGATG 61.475 60.000 15.29 0.00 40.28 3.07
3424 4013 1.756375 GCGGTGTCACTCGATGATGC 61.756 60.000 15.29 0.11 40.28 3.91
3425 4014 1.148157 CGGTGTCACTCGATGATGCC 61.148 60.000 2.35 0.00 40.28 4.40
3426 4015 0.108186 GGTGTCACTCGATGATGCCA 60.108 55.000 2.35 0.00 40.28 4.92
3439 4028 1.000396 ATGCCACTTGCTCCCCTTC 60.000 57.895 0.00 0.00 42.00 3.46
3443 4032 2.037136 CACTTGCTCCCCTTCGCTG 61.037 63.158 0.00 0.00 0.00 5.18
3445 4034 1.743252 CTTGCTCCCCTTCGCTGAC 60.743 63.158 0.00 0.00 0.00 3.51
3446 4035 2.177594 CTTGCTCCCCTTCGCTGACT 62.178 60.000 0.00 0.00 0.00 3.41
3486 4075 4.000325 CGTGACATGGACCTATCAAAACA 59.000 43.478 0.00 0.00 0.00 2.83
3488 4077 5.616866 CGTGACATGGACCTATCAAAACAAC 60.617 44.000 0.00 0.00 0.00 3.32
3490 4079 3.756434 ACATGGACCTATCAAAACAACCG 59.244 43.478 0.00 0.00 0.00 4.44
3492 4081 1.129811 GGACCTATCAAAACAACCGCG 59.870 52.381 0.00 0.00 0.00 6.46
3511 4100 4.436998 CGTCCCGTGTCCCAGCTC 62.437 72.222 0.00 0.00 0.00 4.09
3512 4101 2.997897 GTCCCGTGTCCCAGCTCT 60.998 66.667 0.00 0.00 0.00 4.09
3513 4102 2.680352 TCCCGTGTCCCAGCTCTC 60.680 66.667 0.00 0.00 0.00 3.20
3514 4103 3.775654 CCCGTGTCCCAGCTCTCC 61.776 72.222 0.00 0.00 0.00 3.71
3515 4104 2.997315 CCGTGTCCCAGCTCTCCA 60.997 66.667 0.00 0.00 0.00 3.86
3516 4105 2.362369 CCGTGTCCCAGCTCTCCAT 61.362 63.158 0.00 0.00 0.00 3.41
3517 4106 1.153489 CGTGTCCCAGCTCTCCATG 60.153 63.158 0.00 0.00 0.00 3.66
3518 4107 1.451028 GTGTCCCAGCTCTCCATGC 60.451 63.158 0.00 0.00 0.00 4.06
3519 4108 2.202987 GTCCCAGCTCTCCATGCG 60.203 66.667 0.00 0.00 35.28 4.73
3520 4109 2.364186 TCCCAGCTCTCCATGCGA 60.364 61.111 0.00 0.00 35.28 5.10
3521 4110 2.108566 CCCAGCTCTCCATGCGAG 59.891 66.667 6.02 6.02 40.30 5.03
3522 4111 2.729479 CCCAGCTCTCCATGCGAGT 61.729 63.158 10.68 0.00 39.84 4.18
3523 4112 1.521010 CCAGCTCTCCATGCGAGTG 60.521 63.158 10.68 9.39 39.84 3.51
3524 4113 1.521010 CAGCTCTCCATGCGAGTGG 60.521 63.158 10.68 0.41 39.84 4.00
3525 4114 2.202987 GCTCTCCATGCGAGTGGG 60.203 66.667 10.68 0.00 39.84 4.61
3526 4115 3.023949 GCTCTCCATGCGAGTGGGT 62.024 63.158 10.68 0.00 39.84 4.51
3527 4116 1.142748 CTCTCCATGCGAGTGGGTC 59.857 63.158 9.98 0.00 39.84 4.46
3535 4124 4.351938 CGAGTGGGTCGTTCCGCA 62.352 66.667 11.54 0.36 44.20 5.69
3536 4125 2.264794 GAGTGGGTCGTTCCGCAT 59.735 61.111 11.54 0.00 39.64 4.73
3537 4126 1.810030 GAGTGGGTCGTTCCGCATC 60.810 63.158 11.54 4.53 39.64 3.91
3538 4127 3.186047 GTGGGTCGTTCCGCATCG 61.186 66.667 5.69 0.00 37.27 3.84
3550 4139 3.659850 CGCATCGGATGGTTAGTCA 57.340 52.632 18.96 0.00 0.00 3.41
3551 4140 2.154854 CGCATCGGATGGTTAGTCAT 57.845 50.000 18.96 0.00 0.00 3.06
3552 4141 2.483876 CGCATCGGATGGTTAGTCATT 58.516 47.619 18.96 0.00 0.00 2.57
3553 4142 2.872245 CGCATCGGATGGTTAGTCATTT 59.128 45.455 18.96 0.00 0.00 2.32
3554 4143 3.059597 CGCATCGGATGGTTAGTCATTTC 60.060 47.826 18.96 0.00 0.00 2.17
3555 4144 3.251004 GCATCGGATGGTTAGTCATTTCC 59.749 47.826 18.96 0.00 0.00 3.13
3556 4145 3.553828 TCGGATGGTTAGTCATTTCCC 57.446 47.619 0.00 0.00 0.00 3.97
3557 4146 2.159014 TCGGATGGTTAGTCATTTCCCG 60.159 50.000 0.00 0.00 35.01 5.14
3558 4147 2.572290 GGATGGTTAGTCATTTCCCGG 58.428 52.381 0.00 0.00 0.00 5.73
3559 4148 1.947456 GATGGTTAGTCATTTCCCGGC 59.053 52.381 0.00 0.00 0.00 6.13
3560 4149 0.693622 TGGTTAGTCATTTCCCGGCA 59.306 50.000 0.00 0.00 0.00 5.69
3561 4150 1.283613 TGGTTAGTCATTTCCCGGCAT 59.716 47.619 0.00 0.00 0.00 4.40
3562 4151 2.291282 TGGTTAGTCATTTCCCGGCATT 60.291 45.455 0.00 0.00 0.00 3.56
3563 4152 3.054287 TGGTTAGTCATTTCCCGGCATTA 60.054 43.478 0.00 0.00 0.00 1.90
3564 4153 3.314357 GGTTAGTCATTTCCCGGCATTAC 59.686 47.826 0.00 0.00 0.00 1.89
3565 4154 2.799126 AGTCATTTCCCGGCATTACA 57.201 45.000 0.00 0.00 0.00 2.41
3566 4155 2.365582 AGTCATTTCCCGGCATTACAC 58.634 47.619 0.00 0.00 0.00 2.90
3567 4156 2.026262 AGTCATTTCCCGGCATTACACT 60.026 45.455 0.00 0.00 0.00 3.55
3568 4157 2.097466 GTCATTTCCCGGCATTACACTG 59.903 50.000 0.00 0.00 0.00 3.66
3569 4158 1.102978 ATTTCCCGGCATTACACTGC 58.897 50.000 0.00 0.00 41.53 4.40
3570 4159 1.302383 TTTCCCGGCATTACACTGCG 61.302 55.000 0.00 0.00 43.23 5.18
3571 4160 2.435938 CCCGGCATTACACTGCGT 60.436 61.111 0.00 0.00 43.23 5.24
3572 4161 2.038269 CCCGGCATTACACTGCGTT 61.038 57.895 0.00 0.00 43.23 4.84
3573 4162 1.134487 CCGGCATTACACTGCGTTG 59.866 57.895 0.00 0.00 43.23 4.10
3574 4163 1.573829 CCGGCATTACACTGCGTTGT 61.574 55.000 0.00 0.00 43.23 3.32
3575 4164 0.452618 CGGCATTACACTGCGTTGTG 60.453 55.000 8.07 8.07 43.23 3.33
3576 4165 0.729140 GGCATTACACTGCGTTGTGC 60.729 55.000 9.26 0.00 43.23 4.57
3577 4166 0.729140 GCATTACACTGCGTTGTGCC 60.729 55.000 9.26 0.00 45.60 5.01
3578 4167 0.874390 CATTACACTGCGTTGTGCCT 59.126 50.000 9.26 0.00 45.60 4.75
3579 4168 0.874390 ATTACACTGCGTTGTGCCTG 59.126 50.000 9.26 0.00 45.60 4.85
3580 4169 0.462937 TTACACTGCGTTGTGCCTGT 60.463 50.000 9.26 0.00 45.60 4.00
3581 4170 1.157257 TACACTGCGTTGTGCCTGTG 61.157 55.000 9.26 8.03 46.07 3.66
3582 4171 2.124736 ACTGCGTTGTGCCTGTGT 60.125 55.556 0.00 0.00 45.60 3.72
3583 4172 2.328989 CTGCGTTGTGCCTGTGTG 59.671 61.111 0.00 0.00 45.60 3.82
3584 4173 2.437537 TGCGTTGTGCCTGTGTGT 60.438 55.556 0.00 0.00 45.60 3.72
3585 4174 1.992233 CTGCGTTGTGCCTGTGTGTT 61.992 55.000 0.00 0.00 45.60 3.32
3586 4175 1.138671 GCGTTGTGCCTGTGTGTTT 59.861 52.632 0.00 0.00 37.76 2.83
3587 4176 0.457681 GCGTTGTGCCTGTGTGTTTT 60.458 50.000 0.00 0.00 37.76 2.43
3588 4177 1.544686 CGTTGTGCCTGTGTGTTTTC 58.455 50.000 0.00 0.00 0.00 2.29
3589 4178 1.797348 CGTTGTGCCTGTGTGTTTTCC 60.797 52.381 0.00 0.00 0.00 3.13
3590 4179 1.476488 GTTGTGCCTGTGTGTTTTCCT 59.524 47.619 0.00 0.00 0.00 3.36
3591 4180 1.388547 TGTGCCTGTGTGTTTTCCTC 58.611 50.000 0.00 0.00 0.00 3.71
3592 4181 1.064758 TGTGCCTGTGTGTTTTCCTCT 60.065 47.619 0.00 0.00 0.00 3.69
3593 4182 1.604278 GTGCCTGTGTGTTTTCCTCTC 59.396 52.381 0.00 0.00 0.00 3.20
3594 4183 1.490490 TGCCTGTGTGTTTTCCTCTCT 59.510 47.619 0.00 0.00 0.00 3.10
3595 4184 1.876156 GCCTGTGTGTTTTCCTCTCTG 59.124 52.381 0.00 0.00 0.00 3.35
3596 4185 2.498167 CCTGTGTGTTTTCCTCTCTGG 58.502 52.381 0.00 0.00 37.10 3.86
3597 4186 2.498167 CTGTGTGTTTTCCTCTCTGGG 58.502 52.381 0.00 0.00 36.20 4.45
3598 4187 2.104792 CTGTGTGTTTTCCTCTCTGGGA 59.895 50.000 0.00 0.00 36.20 4.37
3599 4188 2.507886 TGTGTGTTTTCCTCTCTGGGAA 59.492 45.455 0.00 0.00 42.86 3.97
3606 4195 3.508845 TTCCTCTCTGGGAAAACCTTG 57.491 47.619 0.00 0.00 41.77 3.61
3607 4196 2.418669 TCCTCTCTGGGAAAACCTTGT 58.581 47.619 0.00 0.00 41.11 3.16
3608 4197 2.106511 TCCTCTCTGGGAAAACCTTGTG 59.893 50.000 0.00 0.00 41.11 3.33
3609 4198 1.882623 CTCTCTGGGAAAACCTTGTGC 59.117 52.381 0.00 0.00 41.11 4.57
3610 4199 0.961753 CTCTGGGAAAACCTTGTGCC 59.038 55.000 0.00 0.00 41.11 5.01
3611 4200 0.555769 TCTGGGAAAACCTTGTGCCT 59.444 50.000 0.00 0.00 41.11 4.75
3612 4201 1.063266 TCTGGGAAAACCTTGTGCCTT 60.063 47.619 0.00 0.00 41.11 4.35
3613 4202 1.762370 CTGGGAAAACCTTGTGCCTTT 59.238 47.619 0.00 0.00 41.11 3.11
3614 4203 1.484240 TGGGAAAACCTTGTGCCTTTG 59.516 47.619 0.00 0.00 41.11 2.77
3615 4204 1.484653 GGGAAAACCTTGTGCCTTTGT 59.515 47.619 0.00 0.00 35.85 2.83
3616 4205 2.483013 GGGAAAACCTTGTGCCTTTGTC 60.483 50.000 0.00 0.00 35.85 3.18
3617 4206 2.167487 GGAAAACCTTGTGCCTTTGTCA 59.833 45.455 0.00 0.00 0.00 3.58
3618 4207 3.447742 GAAAACCTTGTGCCTTTGTCAG 58.552 45.455 0.00 0.00 0.00 3.51
3619 4208 2.143876 AACCTTGTGCCTTTGTCAGT 57.856 45.000 0.00 0.00 0.00 3.41
3620 4209 1.392589 ACCTTGTGCCTTTGTCAGTG 58.607 50.000 0.00 0.00 0.00 3.66
3621 4210 1.064758 ACCTTGTGCCTTTGTCAGTGA 60.065 47.619 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 116 2.358247 GGCGGCGTGAGAAGGAAA 60.358 61.111 9.37 0.00 0.00 3.13
269 294 3.228017 TGGGTGGAGACGCGTTGA 61.228 61.111 15.53 0.00 43.50 3.18
472 500 1.797933 CGACGTCGTGCTCCTTCTG 60.798 63.158 29.08 0.00 34.11 3.02
809 918 4.790962 TCCTAGTCGCGGCGTCCT 62.791 66.667 22.90 20.00 0.00 3.85
865 975 2.276869 AAAAATCGCCCCCTGAAGC 58.723 52.632 0.00 0.00 0.00 3.86
933 1044 0.321298 GGTGGAGGAAAAGTAGCGCA 60.321 55.000 11.47 0.00 0.00 6.09
957 1068 0.736325 GAGCGCGAAGGCTTTGTAGA 60.736 55.000 12.10 0.00 44.93 2.59
1029 1140 1.064166 AGGAAGAATGTGGATGCAGGG 60.064 52.381 0.00 0.00 0.00 4.45
1032 1143 3.614092 GAGAAGGAAGAATGTGGATGCA 58.386 45.455 0.00 0.00 0.00 3.96
1417 1579 1.019673 CGGCATTGGAGAATGGTCTG 58.980 55.000 0.00 0.00 39.62 3.51
1487 1887 0.737367 ACGCATCATCAGTCACCACG 60.737 55.000 0.00 0.00 0.00 4.94
1488 1888 2.293677 TACGCATCATCAGTCACCAC 57.706 50.000 0.00 0.00 0.00 4.16
1490 1890 1.528586 GCATACGCATCATCAGTCACC 59.471 52.381 0.00 0.00 38.36 4.02
1492 1892 2.600470 TGCATACGCATCATCAGTCA 57.400 45.000 0.00 0.00 45.36 3.41
1520 1920 4.873129 TCCGAATCTGCTCCGCGC 62.873 66.667 0.00 0.00 39.77 6.86
1521 1921 2.656651 CTCCGAATCTGCTCCGCG 60.657 66.667 0.00 0.00 0.00 6.46
1522 1922 2.279784 CCTCCGAATCTGCTCCGC 60.280 66.667 0.00 0.00 0.00 5.54
1523 1923 1.066587 GACCTCCGAATCTGCTCCG 59.933 63.158 0.00 0.00 0.00 4.63
1828 2228 2.133553 CTACAATCTGAGGAGCATGCG 58.866 52.381 13.01 0.00 0.00 4.73
1832 2232 1.208052 GTGCCTACAATCTGAGGAGCA 59.792 52.381 0.00 0.00 34.46 4.26
1833 2233 1.804372 CGTGCCTACAATCTGAGGAGC 60.804 57.143 0.00 0.00 34.46 4.70
1834 2234 1.478510 ACGTGCCTACAATCTGAGGAG 59.521 52.381 0.00 0.00 34.46 3.69
1835 2235 1.476891 GACGTGCCTACAATCTGAGGA 59.523 52.381 0.00 0.00 34.46 3.71
1838 2296 0.172578 CGGACGTGCCTACAATCTGA 59.827 55.000 0.00 0.00 0.00 3.27
1889 2347 2.802667 CTTCTTGCCGCCATCGACG 61.803 63.158 0.00 0.00 38.10 5.12
1890 2348 1.019278 TTCTTCTTGCCGCCATCGAC 61.019 55.000 0.00 0.00 38.10 4.20
1891 2349 0.740868 CTTCTTCTTGCCGCCATCGA 60.741 55.000 0.00 0.00 38.10 3.59
1892 2350 0.740868 TCTTCTTCTTGCCGCCATCG 60.741 55.000 0.00 0.00 0.00 3.84
1893 2351 1.399791 CTTCTTCTTCTTGCCGCCATC 59.600 52.381 0.00 0.00 0.00 3.51
1894 2352 1.003580 TCTTCTTCTTCTTGCCGCCAT 59.996 47.619 0.00 0.00 0.00 4.40
1895 2353 0.396435 TCTTCTTCTTCTTGCCGCCA 59.604 50.000 0.00 0.00 0.00 5.69
1976 2446 2.738695 GCTGCTCTTGTCGCTGCTC 61.739 63.158 0.00 0.00 45.27 4.26
2278 2757 3.924144 AGCTAACTGAAGAGTCTGCAAG 58.076 45.455 1.50 0.00 34.56 4.01
2355 2844 7.412563 GCAGTATATTGCAAAACTTAGTCGTCA 60.413 37.037 14.76 0.00 43.53 4.35
2377 2866 6.771749 ACGGAGTTTACTACTATCATAGCAGT 59.228 38.462 2.97 2.97 37.78 4.40
2378 2867 7.078851 CACGGAGTTTACTACTATCATAGCAG 58.921 42.308 0.00 0.00 41.61 4.24
2379 2868 6.514541 GCACGGAGTTTACTACTATCATAGCA 60.515 42.308 0.00 0.00 41.61 3.49
2380 2869 5.857517 GCACGGAGTTTACTACTATCATAGC 59.142 44.000 0.00 0.00 41.61 2.97
2381 2870 6.380190 GGCACGGAGTTTACTACTATCATAG 58.620 44.000 0.00 0.00 41.61 2.23
2382 2871 5.242393 GGGCACGGAGTTTACTACTATCATA 59.758 44.000 0.00 0.00 41.61 2.15
2383 2872 4.038883 GGGCACGGAGTTTACTACTATCAT 59.961 45.833 0.00 0.00 41.61 2.45
2384 2873 3.382546 GGGCACGGAGTTTACTACTATCA 59.617 47.826 0.00 0.00 41.61 2.15
2385 2874 3.382546 TGGGCACGGAGTTTACTACTATC 59.617 47.826 0.00 0.00 41.61 2.08
2386 2875 3.368248 TGGGCACGGAGTTTACTACTAT 58.632 45.455 0.00 0.00 41.61 2.12
2387 2876 2.806434 TGGGCACGGAGTTTACTACTA 58.194 47.619 0.00 0.00 41.61 1.82
2388 2877 1.636148 TGGGCACGGAGTTTACTACT 58.364 50.000 0.00 0.00 41.61 2.57
2469 2986 1.341156 GGCCTCCTGCTCCACATACT 61.341 60.000 0.00 0.00 40.92 2.12
2470 2987 1.147153 GGCCTCCTGCTCCACATAC 59.853 63.158 0.00 0.00 40.92 2.39
2471 2988 1.306911 TGGCCTCCTGCTCCACATA 60.307 57.895 3.32 0.00 40.92 2.29
2472 2989 2.611800 TGGCCTCCTGCTCCACAT 60.612 61.111 3.32 0.00 40.92 3.21
2493 3010 1.872388 CACGTACATGAACACCACCA 58.128 50.000 0.00 0.00 0.00 4.17
2516 3038 8.927411 AGCATTCTTATTTTTATTACATGGCCT 58.073 29.630 3.32 0.00 0.00 5.19
2619 3156 0.251386 AGAGGACTGGCTCGAGTGAA 60.251 55.000 15.13 0.00 0.00 3.18
2945 3497 4.733542 CCCGGACAAATGGCGGGT 62.734 66.667 0.73 0.00 41.55 5.28
2996 3548 4.100084 TGGACAGGCGATGGCAGG 62.100 66.667 1.01 0.00 39.54 4.85
2997 3549 2.821366 GTGGACAGGCGATGGCAG 60.821 66.667 1.01 0.00 39.54 4.85
2998 3550 4.408821 GGTGGACAGGCGATGGCA 62.409 66.667 1.01 0.00 39.54 4.92
3008 3560 1.543871 GGAAAGTAAAGGCGGTGGACA 60.544 52.381 0.00 0.00 0.00 4.02
3114 3669 3.699894 ACTCCCACTCGCCAGCAG 61.700 66.667 0.00 0.00 0.00 4.24
3115 3670 4.007644 CACTCCCACTCGCCAGCA 62.008 66.667 0.00 0.00 0.00 4.41
3116 3671 4.767255 CCACTCCCACTCGCCAGC 62.767 72.222 0.00 0.00 0.00 4.85
3117 3672 4.087892 CCCACTCCCACTCGCCAG 62.088 72.222 0.00 0.00 0.00 4.85
3132 3687 2.573915 ACTTGAACTTGATCCTCTCCCC 59.426 50.000 0.00 0.00 0.00 4.81
3153 3724 3.432186 GGACTGTACATAGCTTGGATGCA 60.432 47.826 0.00 0.00 34.99 3.96
3223 3794 1.826054 CGAGGAGACGATGCCCTCT 60.826 63.158 0.00 0.00 43.21 3.69
3224 3795 2.725008 CGAGGAGACGATGCCCTC 59.275 66.667 0.00 0.00 42.24 4.30
3258 3846 2.853914 GACGTGGCTCGACTTTGC 59.146 61.111 16.57 0.00 42.86 3.68
3261 3849 1.136984 GATCGACGTGGCTCGACTT 59.863 57.895 16.57 0.00 45.14 3.01
3267 3856 3.518998 CCTCCGATCGACGTGGCT 61.519 66.667 18.66 0.00 40.78 4.75
3280 3869 2.730524 GCTCTCAGGTCCTGCCTCC 61.731 68.421 14.64 0.00 46.96 4.30
3281 3870 2.899505 GCTCTCAGGTCCTGCCTC 59.100 66.667 14.64 0.00 46.96 4.70
3283 3872 4.828925 GCGCTCTCAGGTCCTGCC 62.829 72.222 14.64 1.73 37.58 4.85
3284 3873 4.828925 GGCGCTCTCAGGTCCTGC 62.829 72.222 14.64 1.10 0.00 4.85
3285 3874 3.073735 AGGCGCTCTCAGGTCCTG 61.074 66.667 13.21 13.21 0.00 3.86
3286 3875 2.757917 GAGGCGCTCTCAGGTCCT 60.758 66.667 17.62 0.00 42.02 3.85
3287 3876 3.844090 GGAGGCGCTCTCAGGTCC 61.844 72.222 22.04 8.47 44.19 4.46
3380 3969 5.236695 GTGTCTAGTGAAGAAAACTGGAACC 59.763 44.000 0.00 0.00 36.97 3.62
3390 3979 0.956633 ACCGCGTGTCTAGTGAAGAA 59.043 50.000 4.92 0.00 35.47 2.52
3408 3997 1.002366 GTGGCATCATCGAGTGACAC 58.998 55.000 15.61 15.61 46.03 3.67
3411 4000 2.008543 GCAAGTGGCATCATCGAGTGA 61.009 52.381 0.00 0.00 43.97 3.41
3412 4001 0.376152 GCAAGTGGCATCATCGAGTG 59.624 55.000 0.00 0.00 43.97 3.51
3413 4002 2.772739 GCAAGTGGCATCATCGAGT 58.227 52.632 0.00 0.00 43.97 4.18
3423 4012 2.747855 CGAAGGGGAGCAAGTGGC 60.748 66.667 0.00 0.00 45.30 5.01
3424 4013 2.747855 GCGAAGGGGAGCAAGTGG 60.748 66.667 0.00 0.00 0.00 4.00
3425 4014 2.037136 CAGCGAAGGGGAGCAAGTG 61.037 63.158 0.00 0.00 35.48 3.16
3426 4015 2.217038 TCAGCGAAGGGGAGCAAGT 61.217 57.895 0.00 0.00 35.48 3.16
3439 4028 1.263776 GACTGATCGTCAAGTCAGCG 58.736 55.000 11.26 0.00 44.38 5.18
3506 4095 1.521010 CCACTCGCATGGAGAGCTG 60.521 63.158 15.51 5.99 46.23 4.24
3507 4096 2.729479 CCCACTCGCATGGAGAGCT 61.729 63.158 15.51 0.00 46.23 4.09
3508 4097 2.202987 CCCACTCGCATGGAGAGC 60.203 66.667 15.51 0.00 46.23 4.09
3509 4098 1.142748 GACCCACTCGCATGGAGAG 59.857 63.158 15.51 9.11 46.23 3.20
3510 4099 2.710902 CGACCCACTCGCATGGAGA 61.711 63.158 15.51 0.00 46.23 3.71
3532 4121 2.154854 ATGACTAACCATCCGATGCG 57.845 50.000 2.53 0.00 0.00 4.73
3533 4122 3.251004 GGAAATGACTAACCATCCGATGC 59.749 47.826 2.53 0.00 0.00 3.91
3534 4123 3.815401 GGGAAATGACTAACCATCCGATG 59.185 47.826 0.93 0.93 0.00 3.84
3535 4124 3.494398 CGGGAAATGACTAACCATCCGAT 60.494 47.826 0.00 0.00 35.01 4.18
3536 4125 2.159014 CGGGAAATGACTAACCATCCGA 60.159 50.000 0.00 0.00 35.01 4.55
3537 4126 2.210116 CGGGAAATGACTAACCATCCG 58.790 52.381 0.00 0.00 0.00 4.18
3538 4127 2.572290 CCGGGAAATGACTAACCATCC 58.428 52.381 0.00 0.00 0.00 3.51
3539 4128 1.947456 GCCGGGAAATGACTAACCATC 59.053 52.381 2.18 0.00 0.00 3.51
3540 4129 1.283613 TGCCGGGAAATGACTAACCAT 59.716 47.619 2.18 0.00 0.00 3.55
3541 4130 0.693622 TGCCGGGAAATGACTAACCA 59.306 50.000 2.18 0.00 0.00 3.67
3542 4131 2.052782 ATGCCGGGAAATGACTAACC 57.947 50.000 0.00 0.00 0.00 2.85
3543 4132 3.942748 TGTAATGCCGGGAAATGACTAAC 59.057 43.478 0.00 0.00 0.00 2.34
3544 4133 3.942748 GTGTAATGCCGGGAAATGACTAA 59.057 43.478 0.00 0.00 0.00 2.24
3545 4134 3.199071 AGTGTAATGCCGGGAAATGACTA 59.801 43.478 0.00 0.00 0.00 2.59
3546 4135 2.026262 AGTGTAATGCCGGGAAATGACT 60.026 45.455 0.00 0.00 0.00 3.41
3547 4136 2.097466 CAGTGTAATGCCGGGAAATGAC 59.903 50.000 0.00 0.00 0.00 3.06
3548 4137 2.364632 CAGTGTAATGCCGGGAAATGA 58.635 47.619 0.00 0.00 0.00 2.57
3549 4138 1.202290 GCAGTGTAATGCCGGGAAATG 60.202 52.381 0.00 0.00 40.43 2.32
3550 4139 1.102978 GCAGTGTAATGCCGGGAAAT 58.897 50.000 0.00 0.00 40.43 2.17
3551 4140 1.302383 CGCAGTGTAATGCCGGGAAA 61.302 55.000 0.00 0.00 43.49 3.13
3552 4141 1.743623 CGCAGTGTAATGCCGGGAA 60.744 57.895 0.00 0.00 43.49 3.97
3553 4142 2.125310 CGCAGTGTAATGCCGGGA 60.125 61.111 2.18 0.00 43.49 5.14
3554 4143 2.038269 AACGCAGTGTAATGCCGGG 61.038 57.895 2.18 0.00 45.00 5.73
3555 4144 1.134487 CAACGCAGTGTAATGCCGG 59.866 57.895 0.00 0.00 45.00 6.13
3556 4145 0.452618 CACAACGCAGTGTAATGCCG 60.453 55.000 0.00 0.00 45.00 5.69
3557 4146 0.729140 GCACAACGCAGTGTAATGCC 60.729 55.000 10.22 0.00 45.00 4.40
3558 4147 0.729140 GGCACAACGCAGTGTAATGC 60.729 55.000 12.21 12.21 45.00 3.56
3559 4148 0.874390 AGGCACAACGCAGTGTAATG 59.126 50.000 9.24 0.00 45.00 1.90
3560 4149 0.874390 CAGGCACAACGCAGTGTAAT 59.126 50.000 9.24 0.00 45.00 1.89
3561 4150 0.462937 ACAGGCACAACGCAGTGTAA 60.463 50.000 9.24 0.00 45.00 2.41
3562 4151 1.145156 ACAGGCACAACGCAGTGTA 59.855 52.632 9.24 0.00 45.00 2.90
3563 4152 2.124736 ACAGGCACAACGCAGTGT 60.125 55.556 9.24 0.00 45.00 3.55
3564 4153 2.328989 CACAGGCACAACGCAGTG 59.671 61.111 3.65 3.65 45.00 3.66
3566 4155 1.992233 AACACACAGGCACAACGCAG 61.992 55.000 0.00 0.00 45.17 5.18
3567 4156 1.590610 AAACACACAGGCACAACGCA 61.591 50.000 0.00 0.00 45.17 5.24
3568 4157 0.457681 AAAACACACAGGCACAACGC 60.458 50.000 0.00 0.00 41.28 4.84
3569 4158 1.544686 GAAAACACACAGGCACAACG 58.455 50.000 0.00 0.00 0.00 4.10
3570 4159 1.476488 AGGAAAACACACAGGCACAAC 59.524 47.619 0.00 0.00 0.00 3.32
3571 4160 1.748493 GAGGAAAACACACAGGCACAA 59.252 47.619 0.00 0.00 0.00 3.33
3572 4161 1.064758 AGAGGAAAACACACAGGCACA 60.065 47.619 0.00 0.00 0.00 4.57
3573 4162 1.604278 GAGAGGAAAACACACAGGCAC 59.396 52.381 0.00 0.00 0.00 5.01
3574 4163 1.490490 AGAGAGGAAAACACACAGGCA 59.510 47.619 0.00 0.00 0.00 4.75
3575 4164 1.876156 CAGAGAGGAAAACACACAGGC 59.124 52.381 0.00 0.00 0.00 4.85
3576 4165 2.498167 CCAGAGAGGAAAACACACAGG 58.502 52.381 0.00 0.00 41.22 4.00
3577 4166 2.104792 TCCCAGAGAGGAAAACACACAG 59.895 50.000 0.00 0.00 41.22 3.66
3578 4167 2.123589 TCCCAGAGAGGAAAACACACA 58.876 47.619 0.00 0.00 41.22 3.72
3579 4168 2.930826 TCCCAGAGAGGAAAACACAC 57.069 50.000 0.00 0.00 41.22 3.82
3586 4175 2.783510 ACAAGGTTTTCCCAGAGAGGAA 59.216 45.455 0.00 0.00 44.30 3.36
3587 4176 2.106511 CACAAGGTTTTCCCAGAGAGGA 59.893 50.000 0.00 0.00 41.22 3.71
3588 4177 2.508526 CACAAGGTTTTCCCAGAGAGG 58.491 52.381 0.00 0.00 41.86 3.69
3589 4178 1.882623 GCACAAGGTTTTCCCAGAGAG 59.117 52.381 0.00 0.00 41.86 3.20
3590 4179 1.478654 GGCACAAGGTTTTCCCAGAGA 60.479 52.381 0.00 0.00 41.86 3.10
3591 4180 0.961753 GGCACAAGGTTTTCCCAGAG 59.038 55.000 0.00 0.00 41.86 3.35
3592 4181 0.555769 AGGCACAAGGTTTTCCCAGA 59.444 50.000 0.00 0.00 41.86 3.86
3593 4182 1.413118 AAGGCACAAGGTTTTCCCAG 58.587 50.000 0.00 0.00 41.86 4.45
3594 4183 1.484240 CAAAGGCACAAGGTTTTCCCA 59.516 47.619 0.00 0.00 41.86 4.37
3595 4184 1.484653 ACAAAGGCACAAGGTTTTCCC 59.515 47.619 0.00 0.00 41.86 3.97
3596 4185 2.167487 TGACAAAGGCACAAGGTTTTCC 59.833 45.455 0.00 0.00 41.05 3.13
3597 4186 3.119137 ACTGACAAAGGCACAAGGTTTTC 60.119 43.478 0.00 0.00 0.00 2.29
3598 4187 2.831526 ACTGACAAAGGCACAAGGTTTT 59.168 40.909 0.00 0.00 0.00 2.43
3599 4188 2.166254 CACTGACAAAGGCACAAGGTTT 59.834 45.455 0.00 0.00 0.00 3.27
3600 4189 1.750778 CACTGACAAAGGCACAAGGTT 59.249 47.619 0.00 0.00 0.00 3.50
3601 4190 1.064758 TCACTGACAAAGGCACAAGGT 60.065 47.619 0.00 0.00 0.00 3.50
3602 4191 1.679139 TCACTGACAAAGGCACAAGG 58.321 50.000 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.