Multiple sequence alignment - TraesCS6B01G291000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G291000 chr6B 100.000 2708 0 0 1 2708 523205459 523208166 0.000000e+00 5001.0
1 TraesCS6B01G291000 chr6B 85.011 447 62 5 2265 2708 348687413 348686969 1.480000e-122 449.0
2 TraesCS6B01G291000 chr6B 84.340 447 65 5 2265 2708 348659146 348659590 1.490000e-117 433.0
3 TraesCS6B01G291000 chr6D 94.008 1235 34 12 706 1920 354837660 354836446 0.000000e+00 1834.0
4 TraesCS6B01G291000 chr6D 89.668 271 26 2 189 459 354837983 354837715 7.180000e-91 344.0
5 TraesCS6B01G291000 chr6D 93.333 105 6 1 1919 2023 436375926 436376029 1.300000e-33 154.0
6 TraesCS6B01G291000 chr6A 96.585 1025 23 2 823 1846 486976222 486977235 0.000000e+00 1688.0
7 TraesCS6B01G291000 chr6A 86.637 449 52 3 2262 2708 486978386 486978828 8.710000e-135 490.0
8 TraesCS6B01G291000 chr6A 84.187 449 69 2 2262 2708 116703892 116704340 4.140000e-118 435.0
9 TraesCS6B01G291000 chr6A 83.509 285 33 5 189 459 486975845 486976129 1.240000e-63 254.0
10 TraesCS6B01G291000 chr6A 94.783 115 5 1 2049 2162 486977316 486977430 7.700000e-41 178.0
11 TraesCS6B01G291000 chr6A 94.231 104 5 1 1916 2019 70931889 70931787 1.000000e-34 158.0
12 TraesCS6B01G291000 chr6A 87.129 101 13 0 89 189 562485619 562485519 6.130000e-22 115.0
13 TraesCS6B01G291000 chr6A 90.123 81 8 0 109 189 604473139 604473219 3.690000e-19 106.0
14 TraesCS6B01G291000 chr7D 85.714 448 61 3 2262 2707 11414460 11414014 1.140000e-128 470.0
15 TraesCS6B01G291000 chr7D 84.633 449 67 2 2262 2708 490884606 490884158 1.910000e-121 446.0
16 TraesCS6B01G291000 chr7D 84.045 445 69 2 2261 2703 165884541 165884097 6.930000e-116 427.0
17 TraesCS6B01G291000 chr7D 91.743 109 9 0 83 191 75803047 75803155 4.670000e-33 152.0
18 TraesCS6B01G291000 chr5D 84.035 451 68 4 2261 2708 412152797 412153246 5.360000e-117 431.0
19 TraesCS6B01G291000 chr5D 85.849 106 15 0 84 189 543595327 543595432 2.200000e-21 113.0
20 TraesCS6B01G291000 chr5D 81.600 125 22 1 562 685 377310050 377309926 4.770000e-18 102.0
21 TraesCS6B01G291000 chr5D 78.723 141 23 3 550 689 51861746 51861612 1.340000e-13 87.9
22 TraesCS6B01G291000 chr2D 84.035 451 63 8 2262 2708 625356233 625355788 2.490000e-115 425.0
23 TraesCS6B01G291000 chr2D 83.217 143 23 1 550 691 32039229 32039371 2.190000e-26 130.0
24 TraesCS6B01G291000 chr2D 80.460 174 31 3 550 721 552966503 552966331 2.190000e-26 130.0
25 TraesCS6B01G291000 chr2D 86.792 106 14 0 83 188 30080547 30080442 4.740000e-23 119.0
26 TraesCS6B01G291000 chr2D 76.020 196 40 6 550 742 613218432 613218241 7.980000e-16 95.3
27 TraesCS6B01G291000 chr1B 95.960 99 3 1 1922 2020 301472075 301472172 2.790000e-35 159.0
28 TraesCS6B01G291000 chr1D 94.175 103 5 1 1918 2020 472174435 472174536 3.610000e-34 156.0
29 TraesCS6B01G291000 chr1D 78.947 171 31 4 555 721 481217355 481217524 7.930000e-21 111.0
30 TraesCS6B01G291000 chr1D 77.778 162 33 3 551 710 298435311 298435471 2.220000e-16 97.1
31 TraesCS6B01G291000 chr1D 75.000 192 45 3 551 739 484429173 484429364 4.800000e-13 86.1
32 TraesCS6B01G291000 chrUn 93.396 106 4 3 1918 2023 338411896 338411794 1.300000e-33 154.0
33 TraesCS6B01G291000 chrUn 89.474 114 8 4 1922 2035 79676500 79676609 1.010000e-29 141.0
34 TraesCS6B01G291000 chrUn 97.059 34 1 0 552 585 155026258 155026291 1.050000e-04 58.4
35 TraesCS6B01G291000 chr3D 93.396 106 4 3 1918 2023 511299117 511299015 1.300000e-33 154.0
36 TraesCS6B01G291000 chr3D 92.523 107 7 1 1913 2019 382104936 382104831 4.670000e-33 152.0
37 TraesCS6B01G291000 chr3D 91.818 110 7 2 1922 2031 600092042 600092149 4.670000e-33 152.0
38 TraesCS6B01G291000 chr3D 87.619 105 13 0 85 189 605470993 605470889 3.660000e-24 122.0
39 TraesCS6B01G291000 chr3D 93.878 49 3 0 816 864 23840330 23840378 1.040000e-09 75.0
40 TraesCS6B01G291000 chr2A 93.269 104 3 4 1921 2023 681093499 681093399 1.680000e-32 150.0
41 TraesCS6B01G291000 chr2B 80.311 193 36 2 550 740 222623618 222623426 7.810000e-31 145.0
42 TraesCS6B01G291000 chr2B 80.925 173 31 2 550 720 248457476 248457304 4.700000e-28 135.0
43 TraesCS6B01G291000 chr2B 79.670 182 32 5 563 740 495000491 495000311 2.830000e-25 126.0
44 TraesCS6B01G291000 chr7B 88.991 109 8 4 1925 2032 708551772 708551667 6.080000e-27 132.0
45 TraesCS6B01G291000 chr7B 85.366 123 15 2 83 202 153644100 153643978 1.020000e-24 124.0
46 TraesCS6B01G291000 chr7B 86.726 113 9 5 1924 2034 747374139 747374247 1.320000e-23 121.0
47 TraesCS6B01G291000 chr4A 88.393 112 9 4 1922 2031 102768679 102768570 6.080000e-27 132.0
48 TraesCS6B01G291000 chr4A 80.328 183 27 6 564 740 628199869 628200048 2.190000e-26 130.0
49 TraesCS6B01G291000 chr7A 87.500 112 14 0 83 194 261793188 261793299 2.190000e-26 130.0
50 TraesCS6B01G291000 chr7A 89.216 102 11 0 86 187 223684740 223684639 7.870000e-26 128.0
51 TraesCS6B01G291000 chr5B 87.288 118 9 6 1921 2036 143296589 143296476 2.190000e-26 130.0
52 TraesCS6B01G291000 chr5B 78.689 183 34 5 551 729 432255856 432256037 1.700000e-22 117.0
53 TraesCS6B01G291000 chr4D 83.099 142 23 1 550 690 80083314 80083173 7.870000e-26 128.0
54 TraesCS6B01G291000 chr4D 84.906 106 14 2 87 191 44186100 44185996 3.690000e-19 106.0
55 TraesCS6B01G291000 chr3A 87.273 110 13 1 83 192 718009156 718009048 1.020000e-24 124.0
56 TraesCS6B01G291000 chr3A 87.736 106 11 2 1922 2027 92003950 92004053 3.660000e-24 122.0
57 TraesCS6B01G291000 chr3A 85.833 120 10 6 1921 2038 716998050 716997936 1.320000e-23 121.0
58 TraesCS6B01G291000 chr5A 85.593 118 16 1 74 191 530421672 530421788 3.660000e-24 122.0
59 TraesCS6B01G291000 chr3B 88.235 102 12 0 86 187 821008087 821008188 3.660000e-24 122.0
60 TraesCS6B01G291000 chr3B 91.837 49 4 0 816 864 41508318 41508270 4.840000e-08 69.4
61 TraesCS6B01G291000 chr1A 86.792 106 12 2 1922 2027 194176536 194176639 1.700000e-22 117.0
62 TraesCS6B01G291000 chr1A 84.615 117 17 1 74 189 578333184 578333300 6.130000e-22 115.0
63 TraesCS6B01G291000 chr1A 79.861 144 23 6 550 690 549555382 549555522 1.720000e-17 100.0
64 TraesCS6B01G291000 chr1A 82.569 109 15 2 83 189 20875098 20875204 2.870000e-15 93.5
65 TraesCS6B01G291000 chr4B 75.510 196 44 4 550 742 438371279 438371085 2.870000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G291000 chr6B 523205459 523208166 2707 False 5001.0 5001 100.0000 1 2708 1 chr6B.!!$F2 2707
1 TraesCS6B01G291000 chr6D 354836446 354837983 1537 True 1089.0 1834 91.8380 189 1920 2 chr6D.!!$R1 1731
2 TraesCS6B01G291000 chr6A 486975845 486978828 2983 False 652.5 1688 90.3785 189 2708 4 chr6A.!!$F3 2519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 644 0.035056 CTTTGGTGAAGGAGGGCGAT 60.035 55.0 0.0 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 3279 0.538118 TTAATCCCTCCCAACGGACG 59.462 55.0 0.0 0.0 33.32 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 6.496524 AAAAATATTTAAGAATGAGCGCGC 57.503 33.333 26.66 26.66 0.00 6.86
48 49 2.922504 TATTTAAGAATGAGCGCGCG 57.077 45.000 28.44 28.44 0.00 6.86
49 50 0.316196 ATTTAAGAATGAGCGCGCGC 60.316 50.000 45.10 45.10 42.33 6.86
66 67 3.419759 CGGCTTTACAACGCGGCT 61.420 61.111 12.47 0.00 0.00 5.52
67 68 2.175811 GGCTTTACAACGCGGCTG 59.824 61.111 12.47 10.26 0.00 4.85
68 69 2.501865 GCTTTACAACGCGGCTGC 60.502 61.111 12.47 7.70 37.91 5.25
69 70 2.966309 GCTTTACAACGCGGCTGCT 61.966 57.895 17.03 0.00 39.65 4.24
70 71 1.154413 CTTTACAACGCGGCTGCTG 60.154 57.895 17.03 10.72 39.65 4.41
71 72 2.513065 CTTTACAACGCGGCTGCTGG 62.513 60.000 17.03 7.17 39.65 4.85
72 73 2.997952 TTTACAACGCGGCTGCTGGA 62.998 55.000 17.03 0.93 39.65 3.86
73 74 3.932580 TACAACGCGGCTGCTGGAG 62.933 63.158 17.03 1.80 39.65 3.86
128 129 3.118454 CGCGCCAAACCAGACGAT 61.118 61.111 0.00 0.00 0.00 3.73
129 130 2.480555 GCGCCAAACCAGACGATG 59.519 61.111 0.00 0.00 0.00 3.84
130 131 2.032634 GCGCCAAACCAGACGATGA 61.033 57.895 0.00 0.00 0.00 2.92
131 132 1.573829 GCGCCAAACCAGACGATGAA 61.574 55.000 0.00 0.00 0.00 2.57
132 133 0.165944 CGCCAAACCAGACGATGAAC 59.834 55.000 0.00 0.00 0.00 3.18
134 135 0.165944 CCAAACCAGACGATGAACGC 59.834 55.000 0.00 0.00 46.94 4.84
135 136 0.179250 CAAACCAGACGATGAACGCG 60.179 55.000 3.53 3.53 46.94 6.01
136 137 0.599204 AAACCAGACGATGAACGCGT 60.599 50.000 5.58 5.58 46.94 6.01
137 138 1.282248 AACCAGACGATGAACGCGTG 61.282 55.000 14.98 1.17 46.94 5.34
138 139 2.391821 CAGACGATGAACGCGTGC 59.608 61.111 14.98 13.04 46.94 5.34
139 140 2.809601 AGACGATGAACGCGTGCC 60.810 61.111 14.98 8.97 46.94 5.01
140 141 3.109547 GACGATGAACGCGTGCCA 61.110 61.111 14.98 15.25 46.94 4.92
141 142 2.663478 GACGATGAACGCGTGCCAA 61.663 57.895 14.98 0.00 46.94 4.52
142 143 2.165362 GACGATGAACGCGTGCCAAA 62.165 55.000 14.98 0.00 46.94 3.28
143 144 1.134487 CGATGAACGCGTGCCAAAT 59.866 52.632 14.98 0.00 34.51 2.32
144 145 0.857311 CGATGAACGCGTGCCAAATC 60.857 55.000 14.98 9.41 34.51 2.17
145 146 0.167908 GATGAACGCGTGCCAAATCA 59.832 50.000 14.98 12.61 0.00 2.57
146 147 0.168788 ATGAACGCGTGCCAAATCAG 59.831 50.000 14.98 0.00 0.00 2.90
147 148 1.154225 GAACGCGTGCCAAATCAGG 60.154 57.895 14.98 0.00 0.00 3.86
148 149 1.852067 GAACGCGTGCCAAATCAGGT 61.852 55.000 14.98 0.00 0.00 4.00
149 150 1.452145 AACGCGTGCCAAATCAGGTT 61.452 50.000 14.98 0.00 0.00 3.50
150 151 1.285641 CGCGTGCCAAATCAGGTTT 59.714 52.632 0.00 0.00 0.00 3.27
151 152 0.318614 CGCGTGCCAAATCAGGTTTT 60.319 50.000 0.00 0.00 0.00 2.43
152 153 1.068885 CGCGTGCCAAATCAGGTTTTA 60.069 47.619 0.00 0.00 0.00 1.52
153 154 2.595386 GCGTGCCAAATCAGGTTTTAG 58.405 47.619 0.00 0.00 0.00 1.85
154 155 2.595386 CGTGCCAAATCAGGTTTTAGC 58.405 47.619 0.00 0.00 0.00 3.09
155 156 2.595386 GTGCCAAATCAGGTTTTAGCG 58.405 47.619 0.00 0.00 31.94 4.26
156 157 1.067915 TGCCAAATCAGGTTTTAGCGC 60.068 47.619 0.00 0.00 31.94 5.92
157 158 1.895051 CCAAATCAGGTTTTAGCGCG 58.105 50.000 0.00 0.00 0.00 6.86
158 159 1.259316 CAAATCAGGTTTTAGCGCGC 58.741 50.000 26.66 26.66 0.00 6.86
159 160 0.179200 AAATCAGGTTTTAGCGCGCG 60.179 50.000 28.44 28.44 0.00 6.86
160 161 1.977594 AATCAGGTTTTAGCGCGCGG 61.978 55.000 33.06 13.66 0.00 6.46
161 162 4.811761 CAGGTTTTAGCGCGCGGC 62.812 66.667 33.06 23.14 44.05 6.53
180 181 2.202824 CGTTCGGCGCCTATTGGA 60.203 61.111 26.68 11.29 34.57 3.53
181 182 2.237751 CGTTCGGCGCCTATTGGAG 61.238 63.158 26.68 6.92 36.16 3.86
182 183 1.143183 GTTCGGCGCCTATTGGAGA 59.857 57.895 26.68 9.61 34.95 3.71
183 184 0.249911 GTTCGGCGCCTATTGGAGAT 60.250 55.000 26.68 0.00 34.95 2.75
184 185 0.249868 TTCGGCGCCTATTGGAGATG 60.250 55.000 26.68 4.37 34.95 2.90
185 186 2.320587 CGGCGCCTATTGGAGATGC 61.321 63.158 26.68 0.00 34.95 3.91
186 187 1.072159 GGCGCCTATTGGAGATGCT 59.928 57.895 22.15 0.00 34.95 3.79
187 188 0.952984 GGCGCCTATTGGAGATGCTC 60.953 60.000 22.15 0.00 34.95 4.26
208 209 5.348997 GCTCTTAAGTTGCTATATAAGGCCG 59.651 44.000 13.24 0.00 0.00 6.13
213 214 4.101856 AGTTGCTATATAAGGCCGGGTAT 58.898 43.478 2.18 0.00 0.00 2.73
214 215 5.274822 AGTTGCTATATAAGGCCGGGTATA 58.725 41.667 2.18 1.54 0.00 1.47
216 217 6.214005 AGTTGCTATATAAGGCCGGGTATAAA 59.786 38.462 2.18 0.00 0.00 1.40
239 240 3.073274 AGTTTGTAAGATCCTGGCCAC 57.927 47.619 0.00 0.00 0.00 5.01
241 242 0.392461 TTGTAAGATCCTGGCCACGC 60.392 55.000 0.00 0.00 0.00 5.34
249 250 1.221840 CCTGGCCACGCTGTTATCT 59.778 57.895 0.00 0.00 0.00 1.98
324 341 0.898320 CACATCGTCAACCCTCCTCT 59.102 55.000 0.00 0.00 0.00 3.69
325 342 1.134965 CACATCGTCAACCCTCCTCTC 60.135 57.143 0.00 0.00 0.00 3.20
327 344 0.688087 ATCGTCAACCCTCCTCTCCC 60.688 60.000 0.00 0.00 0.00 4.30
328 345 1.305381 CGTCAACCCTCCTCTCCCT 60.305 63.158 0.00 0.00 0.00 4.20
334 351 0.555369 ACCCTCCTCTCCCTAGGTCA 60.555 60.000 8.29 0.00 37.91 4.02
338 355 2.593026 CTCCTCTCCCTAGGTCATCAC 58.407 57.143 8.29 0.00 37.91 3.06
344 361 1.056700 CCCTAGGTCATCACCCCCTG 61.057 65.000 8.29 0.00 45.12 4.45
354 371 1.928567 CACCCCCTGCCCCTTCTAA 60.929 63.158 0.00 0.00 0.00 2.10
410 427 3.556004 CCGGATGGAGCTCTAATTTCTCC 60.556 52.174 14.64 10.01 45.02 3.71
417 434 5.964477 TGGAGCTCTAATTTCTCCCTCTTTA 59.036 40.000 14.64 0.00 44.37 1.85
432 449 3.181453 CCTCTTTAGGGCTTTAGTAGGGC 60.181 52.174 0.00 0.00 39.48 5.19
438 455 1.449601 GCTTTAGTAGGGCTGCGCA 60.450 57.895 19.22 10.98 0.00 6.09
452 469 2.981560 GCGCACTGGTGGGTCATTG 61.982 63.158 16.80 0.00 44.26 2.82
487 522 3.859961 GTCTCACACATTAGACCATCGTG 59.140 47.826 0.00 0.00 36.86 4.35
489 524 2.233676 TCACACATTAGACCATCGTGCT 59.766 45.455 0.00 0.00 0.00 4.40
495 530 0.963856 TAGACCATCGTGCTGACGGT 60.964 55.000 0.00 0.00 46.11 4.83
500 535 3.642901 ATCGTGCTGACGGTGTATC 57.357 52.632 0.00 0.00 46.11 2.24
501 536 1.103803 ATCGTGCTGACGGTGTATCT 58.896 50.000 0.00 0.00 46.11 1.98
502 537 1.741528 TCGTGCTGACGGTGTATCTA 58.258 50.000 0.00 0.00 46.11 1.98
503 538 1.669265 TCGTGCTGACGGTGTATCTAG 59.331 52.381 0.00 0.00 46.11 2.43
504 539 1.841450 GTGCTGACGGTGTATCTAGC 58.159 55.000 0.00 0.00 0.00 3.42
505 540 1.134367 GTGCTGACGGTGTATCTAGCA 59.866 52.381 0.00 0.00 38.68 3.49
506 541 2.031870 TGCTGACGGTGTATCTAGCAT 58.968 47.619 0.00 0.00 36.37 3.79
507 542 2.034685 TGCTGACGGTGTATCTAGCATC 59.965 50.000 0.00 0.00 36.37 3.91
508 543 2.918549 GCTGACGGTGTATCTAGCATCG 60.919 54.545 0.62 0.62 44.98 3.84
511 546 1.951792 CGGTGTATCTAGCATCGTCG 58.048 55.000 0.00 0.00 35.92 5.12
512 547 1.399855 CGGTGTATCTAGCATCGTCGG 60.400 57.143 0.00 0.00 35.92 4.79
513 548 1.878088 GGTGTATCTAGCATCGTCGGA 59.122 52.381 0.00 0.00 0.00 4.55
514 549 2.488545 GGTGTATCTAGCATCGTCGGAT 59.511 50.000 0.00 0.00 0.00 4.18
521 556 4.969196 CATCGTCGGATGGGCGGG 62.969 72.222 0.00 0.00 45.15 6.13
543 578 4.778143 GGCGTGCCTCGGTTGGAT 62.778 66.667 2.98 0.00 40.26 3.41
544 579 3.195698 GCGTGCCTCGGTTGGATC 61.196 66.667 0.99 0.00 40.26 3.36
545 580 2.579201 CGTGCCTCGGTTGGATCT 59.421 61.111 0.00 0.00 35.71 2.75
546 581 1.519455 CGTGCCTCGGTTGGATCTC 60.519 63.158 0.00 0.00 35.71 2.75
547 582 1.519455 GTGCCTCGGTTGGATCTCG 60.519 63.158 0.00 0.00 0.00 4.04
548 583 2.586357 GCCTCGGTTGGATCTCGC 60.586 66.667 0.00 0.00 0.00 5.03
549 584 2.107141 CCTCGGTTGGATCTCGCC 59.893 66.667 0.00 0.00 0.00 5.54
550 585 2.278857 CTCGGTTGGATCTCGCCG 60.279 66.667 13.43 13.43 44.95 6.46
552 587 2.125326 TCGGTTGGATCTCGCCGAT 61.125 57.895 16.68 0.00 46.80 4.18
553 588 1.951130 CGGTTGGATCTCGCCGATG 60.951 63.158 14.11 0.00 46.33 3.84
554 589 1.441729 GGTTGGATCTCGCCGATGA 59.558 57.895 0.00 0.00 30.84 2.92
555 590 0.876342 GGTTGGATCTCGCCGATGAC 60.876 60.000 0.00 0.00 30.84 3.06
556 591 0.103208 GTTGGATCTCGCCGATGACT 59.897 55.000 0.00 0.00 30.84 3.41
557 592 0.824109 TTGGATCTCGCCGATGACTT 59.176 50.000 0.00 0.00 30.84 3.01
558 593 0.824109 TGGATCTCGCCGATGACTTT 59.176 50.000 0.00 0.00 30.84 2.66
559 594 1.207089 TGGATCTCGCCGATGACTTTT 59.793 47.619 0.00 0.00 30.84 2.27
560 595 2.280628 GGATCTCGCCGATGACTTTTT 58.719 47.619 0.00 0.00 30.84 1.94
561 596 2.030946 GGATCTCGCCGATGACTTTTTG 59.969 50.000 0.00 0.00 30.84 2.44
562 597 2.448926 TCTCGCCGATGACTTTTTGA 57.551 45.000 0.00 0.00 0.00 2.69
563 598 2.066262 TCTCGCCGATGACTTTTTGAC 58.934 47.619 0.00 0.00 0.00 3.18
564 599 2.069273 CTCGCCGATGACTTTTTGACT 58.931 47.619 0.00 0.00 0.00 3.41
565 600 1.798223 TCGCCGATGACTTTTTGACTG 59.202 47.619 0.00 0.00 0.00 3.51
566 601 1.531149 CGCCGATGACTTTTTGACTGT 59.469 47.619 0.00 0.00 0.00 3.55
567 602 2.411547 CGCCGATGACTTTTTGACTGTC 60.412 50.000 0.00 0.00 0.00 3.51
568 603 2.808543 GCCGATGACTTTTTGACTGTCT 59.191 45.455 9.51 0.00 0.00 3.41
569 604 3.994392 GCCGATGACTTTTTGACTGTCTA 59.006 43.478 9.51 0.00 0.00 2.59
570 605 4.143094 GCCGATGACTTTTTGACTGTCTAC 60.143 45.833 9.51 0.00 0.00 2.59
571 606 5.230942 CCGATGACTTTTTGACTGTCTACT 58.769 41.667 9.51 0.00 0.00 2.57
572 607 6.387465 CCGATGACTTTTTGACTGTCTACTA 58.613 40.000 9.51 0.00 0.00 1.82
573 608 6.308282 CCGATGACTTTTTGACTGTCTACTAC 59.692 42.308 9.51 0.00 0.00 2.73
574 609 6.861572 CGATGACTTTTTGACTGTCTACTACA 59.138 38.462 9.51 2.05 36.42 2.74
575 610 7.381408 CGATGACTTTTTGACTGTCTACTACAA 59.619 37.037 9.51 0.00 37.74 2.41
576 611 7.766219 TGACTTTTTGACTGTCTACTACAAC 57.234 36.000 9.51 0.00 37.74 3.32
577 612 7.324935 TGACTTTTTGACTGTCTACTACAACA 58.675 34.615 9.51 0.00 37.74 3.33
578 613 7.820386 TGACTTTTTGACTGTCTACTACAACAA 59.180 33.333 9.51 0.00 37.74 2.83
579 614 8.197988 ACTTTTTGACTGTCTACTACAACAAG 57.802 34.615 9.51 5.84 37.74 3.16
580 615 7.280205 ACTTTTTGACTGTCTACTACAACAAGG 59.720 37.037 9.51 0.00 37.74 3.61
581 616 5.864418 TTGACTGTCTACTACAACAAGGT 57.136 39.130 9.51 0.00 37.74 3.50
582 617 5.864418 TGACTGTCTACTACAACAAGGTT 57.136 39.130 9.51 0.00 37.74 3.50
583 618 6.229936 TGACTGTCTACTACAACAAGGTTT 57.770 37.500 9.51 0.00 37.74 3.27
584 619 6.046593 TGACTGTCTACTACAACAAGGTTTG 58.953 40.000 9.51 0.00 37.74 2.93
586 621 6.047231 ACTGTCTACTACAACAAGGTTTGTC 58.953 40.000 0.00 0.00 44.59 3.18
587 622 5.979993 TGTCTACTACAACAAGGTTTGTCA 58.020 37.500 0.00 0.00 44.59 3.58
588 623 6.046593 TGTCTACTACAACAAGGTTTGTCAG 58.953 40.000 0.00 0.00 44.59 3.51
589 624 6.127281 TGTCTACTACAACAAGGTTTGTCAGA 60.127 38.462 0.00 0.00 44.59 3.27
590 625 6.200475 GTCTACTACAACAAGGTTTGTCAGAC 59.800 42.308 0.00 0.00 44.59 3.51
591 626 5.099042 ACTACAACAAGGTTTGTCAGACT 57.901 39.130 1.31 0.00 44.59 3.24
592 627 5.497474 ACTACAACAAGGTTTGTCAGACTT 58.503 37.500 1.31 0.00 44.59 3.01
593 628 5.944007 ACTACAACAAGGTTTGTCAGACTTT 59.056 36.000 1.31 0.00 44.59 2.66
594 629 5.059404 ACAACAAGGTTTGTCAGACTTTG 57.941 39.130 14.52 14.52 44.59 2.77
595 630 4.082245 ACAACAAGGTTTGTCAGACTTTGG 60.082 41.667 18.67 7.76 44.59 3.28
596 631 3.697166 ACAAGGTTTGTCAGACTTTGGT 58.303 40.909 18.67 5.79 40.56 3.67
597 632 3.443681 ACAAGGTTTGTCAGACTTTGGTG 59.556 43.478 18.67 0.23 40.56 4.17
598 633 3.644966 AGGTTTGTCAGACTTTGGTGA 57.355 42.857 1.31 0.00 0.00 4.02
599 634 3.963129 AGGTTTGTCAGACTTTGGTGAA 58.037 40.909 1.31 0.00 0.00 3.18
600 635 3.947834 AGGTTTGTCAGACTTTGGTGAAG 59.052 43.478 1.31 0.00 41.32 3.02
601 636 3.066760 GGTTTGTCAGACTTTGGTGAAGG 59.933 47.826 1.31 0.00 39.79 3.46
602 637 3.924114 TTGTCAGACTTTGGTGAAGGA 57.076 42.857 1.31 0.00 39.79 3.36
603 638 3.475566 TGTCAGACTTTGGTGAAGGAG 57.524 47.619 1.31 0.00 39.79 3.69
604 639 2.104792 TGTCAGACTTTGGTGAAGGAGG 59.895 50.000 1.31 0.00 39.79 4.30
605 640 1.699634 TCAGACTTTGGTGAAGGAGGG 59.300 52.381 0.00 0.00 39.79 4.30
606 641 0.402121 AGACTTTGGTGAAGGAGGGC 59.598 55.000 0.00 0.00 39.79 5.19
607 642 0.955919 GACTTTGGTGAAGGAGGGCG 60.956 60.000 0.00 0.00 39.79 6.13
608 643 1.374947 CTTTGGTGAAGGAGGGCGA 59.625 57.895 0.00 0.00 0.00 5.54
609 644 0.035056 CTTTGGTGAAGGAGGGCGAT 60.035 55.000 0.00 0.00 0.00 4.58
610 645 0.322456 TTTGGTGAAGGAGGGCGATG 60.322 55.000 0.00 0.00 0.00 3.84
611 646 1.198094 TTGGTGAAGGAGGGCGATGA 61.198 55.000 0.00 0.00 0.00 2.92
612 647 1.153349 GGTGAAGGAGGGCGATGAC 60.153 63.158 0.00 0.00 0.00 3.06
613 648 1.519455 GTGAAGGAGGGCGATGACG 60.519 63.158 0.00 0.00 42.93 4.35
614 649 2.107141 GAAGGAGGGCGATGACGG 59.893 66.667 0.00 0.00 40.15 4.79
615 650 2.683933 AAGGAGGGCGATGACGGT 60.684 61.111 0.00 0.00 40.15 4.83
616 651 2.907897 GAAGGAGGGCGATGACGGTG 62.908 65.000 0.00 0.00 40.15 4.94
617 652 4.530857 GGAGGGCGATGACGGTGG 62.531 72.222 0.00 0.00 40.15 4.61
620 655 4.778143 GGGCGATGACGGTGGCTT 62.778 66.667 0.00 0.00 40.15 4.35
621 656 3.499737 GGCGATGACGGTGGCTTG 61.500 66.667 0.00 0.00 40.15 4.01
622 657 2.742372 GCGATGACGGTGGCTTGT 60.742 61.111 0.00 0.00 40.15 3.16
623 658 2.740714 GCGATGACGGTGGCTTGTC 61.741 63.158 0.00 0.00 40.15 3.18
624 659 1.079819 CGATGACGGTGGCTTGTCT 60.080 57.895 0.00 0.00 36.10 3.41
625 660 0.670546 CGATGACGGTGGCTTGTCTT 60.671 55.000 0.00 0.71 36.10 3.01
626 661 1.523758 GATGACGGTGGCTTGTCTTT 58.476 50.000 0.00 0.00 36.10 2.52
627 662 1.197721 GATGACGGTGGCTTGTCTTTG 59.802 52.381 0.00 0.00 36.10 2.77
628 663 0.179234 TGACGGTGGCTTGTCTTTGA 59.821 50.000 0.00 0.00 36.10 2.69
629 664 0.586802 GACGGTGGCTTGTCTTTGAC 59.413 55.000 0.00 0.00 32.37 3.18
630 665 0.180406 ACGGTGGCTTGTCTTTGACT 59.820 50.000 0.00 0.00 33.15 3.41
631 666 0.868406 CGGTGGCTTGTCTTTGACTC 59.132 55.000 0.00 0.00 33.15 3.36
632 667 0.868406 GGTGGCTTGTCTTTGACTCG 59.132 55.000 0.00 0.00 33.15 4.18
633 668 0.235926 GTGGCTTGTCTTTGACTCGC 59.764 55.000 0.00 2.21 33.15 5.03
634 669 0.106708 TGGCTTGTCTTTGACTCGCT 59.893 50.000 9.95 0.00 33.15 4.93
635 670 0.793250 GGCTTGTCTTTGACTCGCTC 59.207 55.000 9.95 0.00 33.15 5.03
636 671 1.606737 GGCTTGTCTTTGACTCGCTCT 60.607 52.381 9.95 0.00 33.15 4.09
637 672 2.352814 GGCTTGTCTTTGACTCGCTCTA 60.353 50.000 9.95 0.00 33.15 2.43
638 673 2.920490 GCTTGTCTTTGACTCGCTCTAG 59.080 50.000 0.00 0.00 33.15 2.43
639 674 3.612955 GCTTGTCTTTGACTCGCTCTAGT 60.613 47.826 0.00 0.00 33.15 2.57
640 675 3.560902 TGTCTTTGACTCGCTCTAGTG 57.439 47.619 0.00 0.00 33.15 2.74
641 676 2.255316 GTCTTTGACTCGCTCTAGTGC 58.745 52.381 6.72 6.72 0.00 4.40
642 677 2.094957 GTCTTTGACTCGCTCTAGTGCT 60.095 50.000 14.40 0.00 0.00 4.40
643 678 2.558795 TCTTTGACTCGCTCTAGTGCTT 59.441 45.455 14.40 0.00 0.00 3.91
644 679 2.354109 TTGACTCGCTCTAGTGCTTG 57.646 50.000 14.40 9.19 0.00 4.01
645 680 1.248486 TGACTCGCTCTAGTGCTTGT 58.752 50.000 14.40 11.97 0.00 3.16
646 681 2.433436 TGACTCGCTCTAGTGCTTGTA 58.567 47.619 14.40 0.00 0.00 2.41
647 682 2.420372 TGACTCGCTCTAGTGCTTGTAG 59.580 50.000 14.40 8.83 0.00 2.74
648 683 2.420722 GACTCGCTCTAGTGCTTGTAGT 59.579 50.000 14.40 11.48 0.00 2.73
649 684 2.420722 ACTCGCTCTAGTGCTTGTAGTC 59.579 50.000 14.40 0.00 0.00 2.59
650 685 2.420372 CTCGCTCTAGTGCTTGTAGTCA 59.580 50.000 14.40 0.00 0.00 3.41
651 686 3.017442 TCGCTCTAGTGCTTGTAGTCAT 58.983 45.455 14.40 0.00 0.00 3.06
652 687 3.444034 TCGCTCTAGTGCTTGTAGTCATT 59.556 43.478 14.40 0.00 0.00 2.57
653 688 3.549471 CGCTCTAGTGCTTGTAGTCATTG 59.451 47.826 14.40 0.00 0.00 2.82
654 689 3.308323 GCTCTAGTGCTTGTAGTCATTGC 59.692 47.826 9.52 0.00 0.00 3.56
655 690 4.753233 CTCTAGTGCTTGTAGTCATTGCT 58.247 43.478 0.00 0.00 0.00 3.91
656 691 5.679894 GCTCTAGTGCTTGTAGTCATTGCTA 60.680 44.000 9.52 0.00 0.00 3.49
657 692 5.895928 TCTAGTGCTTGTAGTCATTGCTAG 58.104 41.667 0.00 0.00 0.00 3.42
658 693 3.866651 AGTGCTTGTAGTCATTGCTAGG 58.133 45.455 0.00 0.00 0.00 3.02
659 694 3.261897 AGTGCTTGTAGTCATTGCTAGGT 59.738 43.478 0.00 0.00 0.00 3.08
660 695 3.372206 GTGCTTGTAGTCATTGCTAGGTG 59.628 47.826 0.00 0.00 0.00 4.00
661 696 2.939103 GCTTGTAGTCATTGCTAGGTGG 59.061 50.000 0.00 0.00 0.00 4.61
662 697 3.619979 GCTTGTAGTCATTGCTAGGTGGT 60.620 47.826 0.00 0.00 0.00 4.16
663 698 3.887621 TGTAGTCATTGCTAGGTGGTC 57.112 47.619 0.00 0.00 0.00 4.02
664 699 2.500098 TGTAGTCATTGCTAGGTGGTCC 59.500 50.000 0.00 0.00 0.00 4.46
665 700 1.656587 AGTCATTGCTAGGTGGTCCA 58.343 50.000 0.00 0.00 35.89 4.02
666 701 1.279271 AGTCATTGCTAGGTGGTCCAC 59.721 52.381 14.13 14.13 35.89 4.02
667 702 1.003118 GTCATTGCTAGGTGGTCCACA 59.997 52.381 23.48 3.01 35.86 4.17
668 703 1.278985 TCATTGCTAGGTGGTCCACAG 59.721 52.381 23.48 13.94 35.86 3.66
669 704 1.278985 CATTGCTAGGTGGTCCACAGA 59.721 52.381 23.48 9.42 35.86 3.41
670 705 0.685097 TTGCTAGGTGGTCCACAGAC 59.315 55.000 23.48 10.02 42.73 3.51
684 719 6.575162 GTCCACAGACCTGATTGTAATTTT 57.425 37.500 3.76 0.00 37.00 1.82
685 720 6.981722 GTCCACAGACCTGATTGTAATTTTT 58.018 36.000 3.76 0.00 37.00 1.94
686 721 6.863126 GTCCACAGACCTGATTGTAATTTTTG 59.137 38.462 3.76 0.00 37.00 2.44
687 722 6.549364 TCCACAGACCTGATTGTAATTTTTGT 59.451 34.615 3.76 0.00 0.00 2.83
688 723 7.069331 TCCACAGACCTGATTGTAATTTTTGTT 59.931 33.333 3.76 0.00 0.00 2.83
689 724 8.356657 CCACAGACCTGATTGTAATTTTTGTTA 58.643 33.333 3.76 0.00 0.00 2.41
690 725 9.180678 CACAGACCTGATTGTAATTTTTGTTAC 57.819 33.333 3.76 0.00 35.60 2.50
691 726 8.357402 ACAGACCTGATTGTAATTTTTGTTACC 58.643 33.333 3.76 0.00 34.43 2.85
692 727 8.576442 CAGACCTGATTGTAATTTTTGTTACCT 58.424 33.333 0.00 0.00 34.43 3.08
693 728 8.793592 AGACCTGATTGTAATTTTTGTTACCTC 58.206 33.333 0.00 0.00 34.43 3.85
694 729 7.892609 ACCTGATTGTAATTTTTGTTACCTCC 58.107 34.615 0.00 0.00 34.43 4.30
695 730 7.507616 ACCTGATTGTAATTTTTGTTACCTCCA 59.492 33.333 0.00 0.00 34.43 3.86
696 731 8.028938 CCTGATTGTAATTTTTGTTACCTCCAG 58.971 37.037 0.00 0.00 34.43 3.86
697 732 7.375053 TGATTGTAATTTTTGTTACCTCCAGC 58.625 34.615 0.00 0.00 34.43 4.85
698 733 5.365403 TGTAATTTTTGTTACCTCCAGCG 57.635 39.130 0.00 0.00 34.43 5.18
699 734 4.822896 TGTAATTTTTGTTACCTCCAGCGT 59.177 37.500 0.00 0.00 34.43 5.07
700 735 4.929819 AATTTTTGTTACCTCCAGCGTT 57.070 36.364 0.00 0.00 0.00 4.84
701 736 4.929819 ATTTTTGTTACCTCCAGCGTTT 57.070 36.364 0.00 0.00 0.00 3.60
702 737 4.722361 TTTTTGTTACCTCCAGCGTTTT 57.278 36.364 0.00 0.00 0.00 2.43
703 738 3.974871 TTTGTTACCTCCAGCGTTTTC 57.025 42.857 0.00 0.00 0.00 2.29
711 746 2.132762 CTCCAGCGTTTTCGTACTGTT 58.867 47.619 0.00 0.00 46.03 3.16
714 749 3.676172 TCCAGCGTTTTCGTACTGTTATG 59.324 43.478 0.00 0.00 46.03 1.90
878 929 3.610114 GCAATCGAAGAAAAGAGCAGCAA 60.610 43.478 0.00 0.00 43.58 3.91
961 1015 4.624452 ACCTCATAACTAAACGTCGCTTTC 59.376 41.667 0.00 0.00 0.00 2.62
1093 1147 0.319555 CCACCACATGTTCGTCGTCT 60.320 55.000 0.00 0.00 0.00 4.18
1711 1765 2.037251 TCCAGTGGAAGTGAGTAAGCAC 59.963 50.000 10.20 0.00 40.62 4.40
1712 1766 2.417719 CAGTGGAAGTGAGTAAGCACC 58.582 52.381 0.00 0.00 40.62 5.01
1713 1767 2.047061 AGTGGAAGTGAGTAAGCACCA 58.953 47.619 0.00 0.00 39.59 4.17
1714 1768 2.037772 AGTGGAAGTGAGTAAGCACCAG 59.962 50.000 0.00 0.00 39.59 4.00
1715 1769 2.037251 GTGGAAGTGAGTAAGCACCAGA 59.963 50.000 0.00 0.00 39.59 3.86
1716 1770 2.906389 TGGAAGTGAGTAAGCACCAGAT 59.094 45.455 0.00 0.00 39.59 2.90
1717 1771 3.055819 TGGAAGTGAGTAAGCACCAGATC 60.056 47.826 0.00 0.00 39.59 2.75
1718 1772 3.055819 GGAAGTGAGTAAGCACCAGATCA 60.056 47.826 0.00 0.00 39.59 2.92
1719 1773 3.883830 AGTGAGTAAGCACCAGATCAG 57.116 47.619 0.00 0.00 39.59 2.90
1720 1774 2.093764 AGTGAGTAAGCACCAGATCAGC 60.094 50.000 0.00 0.00 39.59 4.26
1721 1775 1.901833 TGAGTAAGCACCAGATCAGCA 59.098 47.619 0.00 0.00 0.00 4.41
1756 1810 8.466086 AATTCGAAATTGCCTGTAATTCTTTC 57.534 30.769 0.00 0.00 30.33 2.62
1776 1830 2.734606 TCTTGTCTGTACGAAATTGCCG 59.265 45.455 0.00 0.00 0.00 5.69
1808 1863 4.758165 GGAACTAAGAGATCCCTACTCGAG 59.242 50.000 11.84 11.84 39.12 4.04
1838 1893 6.561350 CGCGTTTGAATGTATGATGAATACGA 60.561 38.462 0.00 0.00 43.66 3.43
1855 1910 5.878332 ATACGACATGTTTCATTGCTTCA 57.122 34.783 0.00 0.00 0.00 3.02
1859 1914 5.238432 ACGACATGTTTCATTGCTTCAACTA 59.762 36.000 0.00 0.00 0.00 2.24
1920 1975 6.662414 TGAATCTTTGGATGTCGAATGTAC 57.338 37.500 0.00 0.00 31.75 2.90
1921 1976 6.406370 TGAATCTTTGGATGTCGAATGTACT 58.594 36.000 0.00 0.00 31.75 2.73
1922 1977 7.552459 TGAATCTTTGGATGTCGAATGTACTA 58.448 34.615 0.00 0.00 31.75 1.82
1923 1978 7.491372 TGAATCTTTGGATGTCGAATGTACTAC 59.509 37.037 0.00 0.00 31.75 2.73
1924 1979 6.525578 TCTTTGGATGTCGAATGTACTACT 57.474 37.500 0.00 0.00 0.00 2.57
1925 1980 6.561614 TCTTTGGATGTCGAATGTACTACTC 58.438 40.000 0.00 0.00 0.00 2.59
1926 1981 4.913335 TGGATGTCGAATGTACTACTCC 57.087 45.455 0.00 0.00 0.00 3.85
1927 1982 3.635373 TGGATGTCGAATGTACTACTCCC 59.365 47.826 0.00 0.00 0.00 4.30
1928 1983 3.890147 GGATGTCGAATGTACTACTCCCT 59.110 47.826 0.00 0.00 0.00 4.20
1929 1984 4.023021 GGATGTCGAATGTACTACTCCCTC 60.023 50.000 0.00 0.00 0.00 4.30
1930 1985 3.285484 TGTCGAATGTACTACTCCCTCC 58.715 50.000 0.00 0.00 0.00 4.30
1931 1986 2.290093 GTCGAATGTACTACTCCCTCCG 59.710 54.545 0.00 0.00 0.00 4.63
1932 1987 2.171237 TCGAATGTACTACTCCCTCCGA 59.829 50.000 0.00 0.00 0.00 4.55
1933 1988 3.147629 CGAATGTACTACTCCCTCCGAT 58.852 50.000 0.00 0.00 0.00 4.18
1934 1989 3.568853 CGAATGTACTACTCCCTCCGATT 59.431 47.826 0.00 0.00 0.00 3.34
1935 1990 4.320348 CGAATGTACTACTCCCTCCGATTC 60.320 50.000 0.00 0.00 0.00 2.52
1936 1991 2.941480 TGTACTACTCCCTCCGATTCC 58.059 52.381 0.00 0.00 0.00 3.01
1937 1992 2.242965 TGTACTACTCCCTCCGATTCCA 59.757 50.000 0.00 0.00 0.00 3.53
1938 1993 2.544844 ACTACTCCCTCCGATTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
1939 1994 2.829023 ACTACTCCCTCCGATTCCAAA 58.171 47.619 0.00 0.00 0.00 3.28
1940 1995 3.178865 ACTACTCCCTCCGATTCCAAAA 58.821 45.455 0.00 0.00 0.00 2.44
1941 1996 3.780850 ACTACTCCCTCCGATTCCAAAAT 59.219 43.478 0.00 0.00 0.00 1.82
1942 1997 4.966805 ACTACTCCCTCCGATTCCAAAATA 59.033 41.667 0.00 0.00 0.00 1.40
1943 1998 4.423625 ACTCCCTCCGATTCCAAAATAG 57.576 45.455 0.00 0.00 0.00 1.73
1944 1999 4.037927 ACTCCCTCCGATTCCAAAATAGA 58.962 43.478 0.00 0.00 0.00 1.98
1945 2000 4.660771 ACTCCCTCCGATTCCAAAATAGAT 59.339 41.667 0.00 0.00 0.00 1.98
1946 2001 4.973168 TCCCTCCGATTCCAAAATAGATG 58.027 43.478 0.00 0.00 0.00 2.90
1947 2002 4.658435 TCCCTCCGATTCCAAAATAGATGA 59.342 41.667 0.00 0.00 0.00 2.92
1948 2003 5.310594 TCCCTCCGATTCCAAAATAGATGAT 59.689 40.000 0.00 0.00 0.00 2.45
1949 2004 5.645497 CCCTCCGATTCCAAAATAGATGATC 59.355 44.000 0.00 0.00 0.00 2.92
1950 2005 5.645497 CCTCCGATTCCAAAATAGATGATCC 59.355 44.000 0.00 0.00 0.00 3.36
1951 2006 6.186420 TCCGATTCCAAAATAGATGATCCA 57.814 37.500 0.00 0.00 0.00 3.41
1952 2007 6.600388 TCCGATTCCAAAATAGATGATCCAA 58.400 36.000 0.00 0.00 0.00 3.53
1953 2008 6.486657 TCCGATTCCAAAATAGATGATCCAAC 59.513 38.462 0.00 0.00 0.00 3.77
1954 2009 6.488006 CCGATTCCAAAATAGATGATCCAACT 59.512 38.462 0.00 0.00 0.00 3.16
1955 2010 7.013655 CCGATTCCAAAATAGATGATCCAACTT 59.986 37.037 0.00 0.00 0.00 2.66
1956 2011 8.408601 CGATTCCAAAATAGATGATCCAACTTT 58.591 33.333 0.00 0.00 0.00 2.66
1971 2026 9.787435 TGATCCAACTTTATACTAACTTTGTGT 57.213 29.630 0.00 0.00 0.00 3.72
1993 2048 9.850198 TGTGTTAAAGTTAGTATAAAGTTGGGT 57.150 29.630 0.00 0.00 0.00 4.51
2005 2060 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
2006 2061 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
2007 2062 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
2008 2063 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2009 2064 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2010 2065 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2011 2066 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2012 2067 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2013 2068 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2014 2069 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2015 2070 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2016 2071 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2047 2102 5.888691 AACGCACATAACAATGGATGTAA 57.111 34.783 3.28 0.00 42.99 2.41
2053 2108 8.128582 CGCACATAACAATGGATGTAATAAGTT 58.871 33.333 3.28 0.00 42.99 2.66
2054 2109 9.450807 GCACATAACAATGGATGTAATAAGTTC 57.549 33.333 3.28 0.00 42.99 3.01
2057 2131 6.693315 AACAATGGATGTAATAAGTTCGGG 57.307 37.500 0.00 0.00 42.99 5.14
2060 2134 6.542370 ACAATGGATGTAATAAGTTCGGGAAG 59.458 38.462 0.00 0.00 41.63 3.46
2085 2159 8.295288 AGCAGAAACTTAGACAATTTGAATGAG 58.705 33.333 2.79 0.38 0.00 2.90
2150 2224 2.159142 ACAGGGACCGAAACGATGTATC 60.159 50.000 0.00 0.00 0.00 2.24
2186 3069 2.891580 TGTACCTCTCTCACAAGGTGAC 59.108 50.000 4.33 0.70 45.49 3.67
2187 3070 1.343069 ACCTCTCTCACAAGGTGACC 58.657 55.000 0.00 0.00 44.26 4.02
2195 3078 3.053991 TCTCACAAGGTGACCAGGAAAAA 60.054 43.478 3.63 0.00 37.67 1.94
2196 3079 3.891366 CTCACAAGGTGACCAGGAAAAAT 59.109 43.478 3.63 0.00 37.67 1.82
2197 3080 3.636300 TCACAAGGTGACCAGGAAAAATG 59.364 43.478 3.63 0.00 37.67 2.32
2209 3092 2.721906 AGGAAAAATGTTCCTCCCCTCA 59.278 45.455 0.00 0.00 45.32 3.86
2214 3097 4.682021 AAATGTTCCTCCCCTCAATCTT 57.318 40.909 0.00 0.00 0.00 2.40
2221 3104 0.902531 TCCCCTCAATCTTCACCGAC 59.097 55.000 0.00 0.00 0.00 4.79
2225 3108 1.272781 CTCAATCTTCACCGACGAGC 58.727 55.000 0.00 0.00 0.00 5.03
2226 3109 0.108804 TCAATCTTCACCGACGAGCC 60.109 55.000 0.00 0.00 0.00 4.70
2245 3150 3.782443 GTAGCGGTGGTGGGGAGG 61.782 72.222 0.00 0.00 0.00 4.30
2267 3197 2.164338 GATTTCGGGTGCCTGGTTTTA 58.836 47.619 0.00 0.00 0.00 1.52
2273 3203 1.613520 GGGTGCCTGGTTTTAGTCCTC 60.614 57.143 0.00 0.00 0.00 3.71
2274 3204 1.073284 GGTGCCTGGTTTTAGTCCTCA 59.927 52.381 0.00 0.00 0.00 3.86
2281 3211 1.703513 GGTTTTAGTCCTCACAGGGGT 59.296 52.381 0.00 0.00 35.59 4.95
2297 3227 1.338011 GGGGTGACGTTTTGACGGATA 60.338 52.381 3.90 0.00 37.45 2.59
2310 3240 1.883084 CGGATAGCGGCGCTTCTTT 60.883 57.895 40.77 21.81 40.44 2.52
2349 3279 4.142966 CGGGTTTCGATCCTTTACAAGTTC 60.143 45.833 7.03 0.00 42.43 3.01
2358 3288 2.222445 CCTTTACAAGTTCGTCCGTTGG 59.778 50.000 0.00 0.00 0.00 3.77
2361 3291 0.249741 ACAAGTTCGTCCGTTGGGAG 60.250 55.000 0.00 0.00 44.97 4.30
2368 3298 0.538118 CGTCCGTTGGGAGGGATTAA 59.462 55.000 0.00 0.00 44.97 1.40
2396 3326 4.954933 GGCGTAGATTCCTGCCAA 57.045 55.556 6.55 0.00 46.76 4.52
2426 3356 1.014564 CGGCGAGGTTGAGGTTTCTC 61.015 60.000 0.00 0.00 40.36 2.87
2428 3358 3.888093 CGAGGTTGAGGTTTCTCGT 57.112 52.632 0.00 0.00 42.61 4.18
2429 3359 2.150397 CGAGGTTGAGGTTTCTCGTT 57.850 50.000 0.00 0.00 42.61 3.85
2474 3405 2.737252 GGTGTCAGGTTTTCAGATCGAC 59.263 50.000 0.00 0.00 0.00 4.20
2487 3418 5.604758 TCAGATCGACTCAAGGATTCAAT 57.395 39.130 0.00 0.00 0.00 2.57
2498 3429 4.157105 TCAAGGATTCAATGACGACGACTA 59.843 41.667 0.00 0.00 0.00 2.59
2501 3432 2.251869 TTCAATGACGACGACTACGG 57.748 50.000 0.00 0.00 44.46 4.02
2505 3436 0.743701 ATGACGACGACTACGGCTCT 60.744 55.000 0.00 0.00 46.46 4.09
2522 3453 0.755698 TCTGGGGCGCTAGTCCTTAG 60.756 60.000 13.83 3.33 43.12 2.18
2524 3455 2.508751 GGGGCGCTAGTCCTTAGGG 61.509 68.421 7.64 0.00 43.12 3.53
2529 3460 1.327690 CGCTAGTCCTTAGGGGCACA 61.328 60.000 0.00 0.00 40.27 4.57
2542 3473 1.639298 GGGCACATGCACGAAGACTC 61.639 60.000 6.15 0.00 44.36 3.36
2543 3474 1.639298 GGCACATGCACGAAGACTCC 61.639 60.000 6.15 0.00 44.36 3.85
2544 3475 0.671781 GCACATGCACGAAGACTCCT 60.672 55.000 0.00 0.00 41.59 3.69
2555 3487 2.477021 CGAAGACTCCTGACTGTCATCG 60.477 54.545 11.45 11.59 43.96 3.84
2565 3497 2.029918 TGACTGTCATCGACAAGGTCAG 60.030 50.000 6.36 0.00 40.36 3.51
2566 3498 1.273606 ACTGTCATCGACAAGGTCAGG 59.726 52.381 0.00 0.00 42.26 3.86
2594 3526 0.249489 GGTATGAGAGCGGCGACAAT 60.249 55.000 12.98 4.68 0.00 2.71
2595 3527 0.855349 GTATGAGAGCGGCGACAATG 59.145 55.000 12.98 0.00 0.00 2.82
2596 3528 0.744281 TATGAGAGCGGCGACAATGA 59.256 50.000 12.98 0.00 0.00 2.57
2604 3536 2.850404 GCGACAATGACGCGTTGA 59.150 55.556 15.53 3.23 46.05 3.18
2629 3561 2.676121 TTCTGGCGGTGGCAATGG 60.676 61.111 0.00 0.00 42.47 3.16
2630 3562 3.505790 TTCTGGCGGTGGCAATGGT 62.506 57.895 0.00 0.00 42.47 3.55
2631 3563 3.443045 CTGGCGGTGGCAATGGTC 61.443 66.667 0.00 0.00 42.47 4.02
2634 3566 3.361977 GCGGTGGCAATGGTCGTT 61.362 61.111 0.00 0.00 39.62 3.85
2652 3584 2.677037 CGTTAGGTGGTCCATGAACCTC 60.677 54.545 1.64 0.00 43.33 3.85
2656 3588 1.656652 GTGGTCCATGAACCTCGATG 58.343 55.000 1.64 0.00 40.20 3.84
2695 3627 4.062293 TGAGGTGTTTTGTACTTCCGATG 58.938 43.478 0.00 0.00 0.00 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.171337 CGCGCGCTCATTCTTAAATATTTTT 59.829 36.000 30.48 0.00 0.00 1.94
25 26 4.670621 CGCGCGCTCATTCTTAAATATTTT 59.329 37.500 30.48 0.00 0.00 1.82
26 27 4.211389 CGCGCGCTCATTCTTAAATATTT 58.789 39.130 30.48 5.89 0.00 1.40
27 28 3.799035 CGCGCGCTCATTCTTAAATATT 58.201 40.909 30.48 0.00 0.00 1.28
28 29 2.411547 GCGCGCGCTCATTCTTAAATAT 60.412 45.455 44.38 0.00 38.26 1.28
29 30 1.070843 GCGCGCGCTCATTCTTAAATA 60.071 47.619 44.38 0.00 38.26 1.40
30 31 0.316196 GCGCGCGCTCATTCTTAAAT 60.316 50.000 44.38 0.00 38.26 1.40
31 32 1.060308 GCGCGCGCTCATTCTTAAA 59.940 52.632 44.38 0.00 38.26 1.52
32 33 2.701006 GCGCGCGCTCATTCTTAA 59.299 55.556 44.38 0.00 38.26 1.85
33 34 3.616577 CGCGCGCGCTCATTCTTA 61.617 61.111 45.97 0.00 39.32 2.10
49 50 3.419759 AGCCGCGTTGTAAAGCCG 61.420 61.111 4.92 0.00 0.00 5.52
50 51 2.175811 CAGCCGCGTTGTAAAGCC 59.824 61.111 4.92 0.00 0.00 4.35
51 52 2.501865 GCAGCCGCGTTGTAAAGC 60.502 61.111 4.92 0.00 0.00 3.51
52 53 1.154413 CAGCAGCCGCGTTGTAAAG 60.154 57.895 4.92 0.00 45.49 1.85
53 54 2.612567 CCAGCAGCCGCGTTGTAAA 61.613 57.895 4.92 0.00 45.49 2.01
54 55 3.047280 CCAGCAGCCGCGTTGTAA 61.047 61.111 4.92 0.00 45.49 2.41
55 56 3.932580 CTCCAGCAGCCGCGTTGTA 62.933 63.158 4.92 0.00 45.49 2.41
88 89 3.485431 CAGCGTTCGCTCCAGCAG 61.485 66.667 16.80 1.36 39.76 4.24
111 112 3.118454 ATCGTCTGGTTTGGCGCG 61.118 61.111 0.00 0.00 0.00 6.86
112 113 1.573829 TTCATCGTCTGGTTTGGCGC 61.574 55.000 0.00 0.00 0.00 6.53
113 114 0.165944 GTTCATCGTCTGGTTTGGCG 59.834 55.000 0.00 0.00 0.00 5.69
114 115 0.165944 CGTTCATCGTCTGGTTTGGC 59.834 55.000 0.00 0.00 34.52 4.52
115 116 0.165944 GCGTTCATCGTCTGGTTTGG 59.834 55.000 0.00 0.00 42.13 3.28
116 117 0.179250 CGCGTTCATCGTCTGGTTTG 60.179 55.000 0.00 0.00 42.13 2.93
117 118 0.599204 ACGCGTTCATCGTCTGGTTT 60.599 50.000 5.58 0.00 42.13 3.27
118 119 1.006571 ACGCGTTCATCGTCTGGTT 60.007 52.632 5.58 0.00 42.13 3.67
119 120 1.733041 CACGCGTTCATCGTCTGGT 60.733 57.895 10.22 0.00 42.13 4.00
120 121 3.071459 GCACGCGTTCATCGTCTGG 62.071 63.158 10.22 0.00 42.13 3.86
121 122 2.391821 GCACGCGTTCATCGTCTG 59.608 61.111 10.22 0.00 42.13 3.51
122 123 2.809601 GGCACGCGTTCATCGTCT 60.810 61.111 10.22 0.00 42.13 4.18
123 124 2.165362 TTTGGCACGCGTTCATCGTC 62.165 55.000 10.22 0.00 42.13 4.20
124 125 1.573829 ATTTGGCACGCGTTCATCGT 61.574 50.000 10.22 0.00 42.13 3.73
125 126 0.857311 GATTTGGCACGCGTTCATCG 60.857 55.000 10.22 0.00 43.12 3.84
126 127 0.167908 TGATTTGGCACGCGTTCATC 59.832 50.000 10.22 4.75 0.00 2.92
127 128 0.168788 CTGATTTGGCACGCGTTCAT 59.831 50.000 10.22 0.00 0.00 2.57
128 129 1.573932 CTGATTTGGCACGCGTTCA 59.426 52.632 10.22 9.20 0.00 3.18
129 130 1.154225 CCTGATTTGGCACGCGTTC 60.154 57.895 10.22 3.91 0.00 3.95
130 131 1.452145 AACCTGATTTGGCACGCGTT 61.452 50.000 10.22 0.00 0.00 4.84
131 132 1.452145 AAACCTGATTTGGCACGCGT 61.452 50.000 5.58 5.58 0.00 6.01
132 133 0.318614 AAAACCTGATTTGGCACGCG 60.319 50.000 3.53 3.53 0.00 6.01
133 134 2.595386 CTAAAACCTGATTTGGCACGC 58.405 47.619 0.00 0.00 0.00 5.34
134 135 2.595386 GCTAAAACCTGATTTGGCACG 58.405 47.619 3.90 0.00 43.70 5.34
135 136 2.595386 CGCTAAAACCTGATTTGGCAC 58.405 47.619 8.48 0.00 44.24 5.01
136 137 1.067915 GCGCTAAAACCTGATTTGGCA 60.068 47.619 0.00 0.00 44.24 4.92
137 138 1.629013 GCGCTAAAACCTGATTTGGC 58.371 50.000 0.00 0.00 41.65 4.52
138 139 1.895051 CGCGCTAAAACCTGATTTGG 58.105 50.000 5.56 0.00 0.00 3.28
139 140 1.259316 GCGCGCTAAAACCTGATTTG 58.741 50.000 26.67 0.00 0.00 2.32
140 141 0.179200 CGCGCGCTAAAACCTGATTT 60.179 50.000 30.48 0.00 0.00 2.17
141 142 1.423845 CGCGCGCTAAAACCTGATT 59.576 52.632 30.48 0.00 0.00 2.57
142 143 2.461110 CCGCGCGCTAAAACCTGAT 61.461 57.895 30.48 0.00 0.00 2.90
143 144 3.115892 CCGCGCGCTAAAACCTGA 61.116 61.111 30.48 0.00 0.00 3.86
144 145 4.811761 GCCGCGCGCTAAAACCTG 62.812 66.667 30.48 10.63 0.00 4.00
164 165 0.249911 ATCTCCAATAGGCGCCGAAC 60.250 55.000 23.20 0.00 33.74 3.95
165 166 0.249868 CATCTCCAATAGGCGCCGAA 60.250 55.000 23.20 14.57 33.74 4.30
166 167 1.367471 CATCTCCAATAGGCGCCGA 59.633 57.895 23.20 18.26 33.74 5.54
167 168 2.320587 GCATCTCCAATAGGCGCCG 61.321 63.158 23.20 6.32 33.74 6.46
168 169 0.952984 GAGCATCTCCAATAGGCGCC 60.953 60.000 21.89 21.89 33.74 6.53
169 170 2.537863 GAGCATCTCCAATAGGCGC 58.462 57.895 0.00 0.00 33.74 6.53
181 182 7.065204 GGCCTTATATAGCAACTTAAGAGCATC 59.935 40.741 20.81 3.26 0.00 3.91
182 183 6.881602 GGCCTTATATAGCAACTTAAGAGCAT 59.118 38.462 20.81 15.40 0.00 3.79
183 184 6.231211 GGCCTTATATAGCAACTTAAGAGCA 58.769 40.000 20.81 11.07 0.00 4.26
184 185 5.348997 CGGCCTTATATAGCAACTTAAGAGC 59.651 44.000 10.09 12.57 0.00 4.09
185 186 5.869888 CCGGCCTTATATAGCAACTTAAGAG 59.130 44.000 10.09 2.35 0.00 2.85
186 187 5.279809 CCCGGCCTTATATAGCAACTTAAGA 60.280 44.000 10.09 0.00 0.00 2.10
187 188 4.935808 CCCGGCCTTATATAGCAACTTAAG 59.064 45.833 0.00 0.00 0.00 1.85
213 214 7.338449 GTGGCCAGGATCTTACAAACTTATTTA 59.662 37.037 5.11 0.00 0.00 1.40
214 215 6.152831 GTGGCCAGGATCTTACAAACTTATTT 59.847 38.462 5.11 0.00 0.00 1.40
216 217 5.193679 GTGGCCAGGATCTTACAAACTTAT 58.806 41.667 5.11 0.00 0.00 1.73
241 242 5.302568 AGAGAAGATGGCTGAGAGATAACAG 59.697 44.000 0.00 0.00 37.22 3.16
249 250 2.539432 TGGAGAGAAGATGGCTGAGA 57.461 50.000 0.00 0.00 0.00 3.27
255 256 7.516452 AGGATTTAGATTTGGAGAGAAGATGG 58.484 38.462 0.00 0.00 0.00 3.51
297 298 3.561120 TTGACGATGTGGGGTGCCC 62.561 63.158 0.00 0.00 45.71 5.36
308 321 0.688087 GGGAGAGGAGGGTTGACGAT 60.688 60.000 0.00 0.00 0.00 3.73
324 341 1.236026 AGGGGGTGATGACCTAGGGA 61.236 60.000 14.81 0.00 42.66 4.20
325 342 1.056700 CAGGGGGTGATGACCTAGGG 61.057 65.000 14.81 0.00 42.66 3.53
327 344 1.700042 GGCAGGGGGTGATGACCTAG 61.700 65.000 0.00 0.00 42.66 3.02
328 345 1.692749 GGCAGGGGGTGATGACCTA 60.693 63.158 0.00 0.00 42.66 3.08
334 351 2.208562 TAGAAGGGGCAGGGGGTGAT 62.209 60.000 0.00 0.00 0.00 3.06
338 355 1.619669 ACTTAGAAGGGGCAGGGGG 60.620 63.158 0.00 0.00 0.00 5.40
344 361 0.391263 CACACCGACTTAGAAGGGGC 60.391 60.000 0.62 0.00 29.82 5.80
354 371 2.507854 CCACACTCCCACACCGACT 61.508 63.158 0.00 0.00 0.00 4.18
410 427 3.181453 GCCCTACTAAAGCCCTAAAGAGG 60.181 52.174 0.00 0.00 43.33 3.69
417 434 1.915983 GCAGCCCTACTAAAGCCCT 59.084 57.895 0.00 0.00 0.00 5.19
432 449 3.907260 ATGACCCACCAGTGCGCAG 62.907 63.158 12.22 0.60 0.00 5.18
438 455 1.075482 CTGCCAATGACCCACCAGT 59.925 57.895 0.00 0.00 0.00 4.00
440 457 2.283101 GCTGCCAATGACCCACCA 60.283 61.111 0.00 0.00 0.00 4.17
447 464 3.544684 AGACATTATTCGCTGCCAATGA 58.455 40.909 14.12 3.12 33.56 2.57
452 469 2.030946 GTGTGAGACATTATTCGCTGCC 59.969 50.000 0.00 0.00 0.00 4.85
487 522 2.667137 GATGCTAGATACACCGTCAGC 58.333 52.381 0.00 0.00 0.00 4.26
489 524 2.289820 GACGATGCTAGATACACCGTCA 59.710 50.000 9.96 0.00 42.78 4.35
495 530 2.488153 CCATCCGACGATGCTAGATACA 59.512 50.000 0.00 0.00 44.00 2.29
496 531 2.159366 CCCATCCGACGATGCTAGATAC 60.159 54.545 0.00 0.00 44.00 2.24
497 532 2.092323 CCCATCCGACGATGCTAGATA 58.908 52.381 0.00 0.00 44.00 1.98
498 533 0.891373 CCCATCCGACGATGCTAGAT 59.109 55.000 0.00 0.00 44.00 1.98
499 534 1.806461 GCCCATCCGACGATGCTAGA 61.806 60.000 0.00 0.00 44.00 2.43
500 535 1.373497 GCCCATCCGACGATGCTAG 60.373 63.158 0.00 0.00 44.00 3.42
501 536 2.734591 GCCCATCCGACGATGCTA 59.265 61.111 0.00 0.00 44.00 3.49
502 537 4.592192 CGCCCATCCGACGATGCT 62.592 66.667 0.00 0.00 44.00 3.79
504 539 4.969196 CCCGCCCATCCGACGATG 62.969 72.222 0.00 0.00 44.80 3.84
526 561 4.778143 ATCCAACCGAGGCACGCC 62.778 66.667 0.00 0.00 41.07 5.68
527 562 3.195698 GATCCAACCGAGGCACGC 61.196 66.667 0.00 0.00 41.07 5.34
528 563 1.519455 GAGATCCAACCGAGGCACG 60.519 63.158 0.00 0.00 42.18 5.34
529 564 1.519455 CGAGATCCAACCGAGGCAC 60.519 63.158 0.00 0.00 0.00 5.01
530 565 2.892640 CGAGATCCAACCGAGGCA 59.107 61.111 0.00 0.00 0.00 4.75
531 566 2.586357 GCGAGATCCAACCGAGGC 60.586 66.667 0.00 0.00 0.00 4.70
532 567 2.107141 GGCGAGATCCAACCGAGG 59.893 66.667 0.00 0.00 0.00 4.63
535 570 1.951130 CATCGGCGAGATCCAACCG 60.951 63.158 17.22 10.74 46.97 4.44
536 571 0.876342 GTCATCGGCGAGATCCAACC 60.876 60.000 17.22 0.00 37.52 3.77
537 572 0.103208 AGTCATCGGCGAGATCCAAC 59.897 55.000 17.22 6.85 37.52 3.77
538 573 0.824109 AAGTCATCGGCGAGATCCAA 59.176 50.000 17.22 0.00 37.52 3.53
539 574 0.824109 AAAGTCATCGGCGAGATCCA 59.176 50.000 17.22 0.00 37.52 3.41
540 575 1.941325 AAAAGTCATCGGCGAGATCC 58.059 50.000 17.22 3.04 37.52 3.36
541 576 2.930040 TCAAAAAGTCATCGGCGAGATC 59.070 45.455 17.22 7.79 37.52 2.75
542 577 2.673368 GTCAAAAAGTCATCGGCGAGAT 59.327 45.455 17.22 0.00 41.01 2.75
543 578 2.066262 GTCAAAAAGTCATCGGCGAGA 58.934 47.619 17.22 10.29 0.00 4.04
544 579 2.069273 AGTCAAAAAGTCATCGGCGAG 58.931 47.619 17.22 7.89 0.00 5.03
545 580 1.798223 CAGTCAAAAAGTCATCGGCGA 59.202 47.619 13.87 13.87 0.00 5.54
546 581 1.531149 ACAGTCAAAAAGTCATCGGCG 59.469 47.619 0.00 0.00 0.00 6.46
547 582 2.808543 AGACAGTCAAAAAGTCATCGGC 59.191 45.455 2.66 0.00 34.80 5.54
548 583 5.230942 AGTAGACAGTCAAAAAGTCATCGG 58.769 41.667 2.66 0.00 34.80 4.18
549 584 6.861572 TGTAGTAGACAGTCAAAAAGTCATCG 59.138 38.462 2.66 0.00 34.80 3.84
550 585 8.488764 GTTGTAGTAGACAGTCAAAAAGTCATC 58.511 37.037 2.66 0.00 39.88 2.92
551 586 7.985184 TGTTGTAGTAGACAGTCAAAAAGTCAT 59.015 33.333 2.66 0.00 39.88 3.06
552 587 7.324935 TGTTGTAGTAGACAGTCAAAAAGTCA 58.675 34.615 2.66 0.00 39.88 3.41
553 588 7.766219 TGTTGTAGTAGACAGTCAAAAAGTC 57.234 36.000 2.66 0.00 39.88 3.01
554 589 7.280205 CCTTGTTGTAGTAGACAGTCAAAAAGT 59.720 37.037 2.66 0.00 39.88 2.66
555 590 7.280205 ACCTTGTTGTAGTAGACAGTCAAAAAG 59.720 37.037 2.66 0.00 39.88 2.27
556 591 7.107542 ACCTTGTTGTAGTAGACAGTCAAAAA 58.892 34.615 2.66 0.00 39.88 1.94
557 592 6.646267 ACCTTGTTGTAGTAGACAGTCAAAA 58.354 36.000 2.66 0.00 39.88 2.44
558 593 6.229936 ACCTTGTTGTAGTAGACAGTCAAA 57.770 37.500 2.66 0.00 39.88 2.69
559 594 5.864418 ACCTTGTTGTAGTAGACAGTCAA 57.136 39.130 2.66 0.00 39.88 3.18
560 595 5.864418 AACCTTGTTGTAGTAGACAGTCA 57.136 39.130 2.66 0.00 39.88 3.41
561 596 6.047231 ACAAACCTTGTTGTAGTAGACAGTC 58.953 40.000 0.00 0.00 42.22 3.51
562 597 5.985911 ACAAACCTTGTTGTAGTAGACAGT 58.014 37.500 0.00 0.00 42.22 3.55
563 598 6.046593 TGACAAACCTTGTTGTAGTAGACAG 58.953 40.000 0.00 0.00 45.52 3.51
564 599 5.979993 TGACAAACCTTGTTGTAGTAGACA 58.020 37.500 0.00 0.00 45.52 3.41
565 600 6.200475 GTCTGACAAACCTTGTTGTAGTAGAC 59.800 42.308 2.24 10.87 45.52 2.59
566 601 6.097839 AGTCTGACAAACCTTGTTGTAGTAGA 59.902 38.462 10.88 0.00 45.52 2.59
567 602 6.281405 AGTCTGACAAACCTTGTTGTAGTAG 58.719 40.000 10.88 0.00 45.52 2.57
568 603 6.229936 AGTCTGACAAACCTTGTTGTAGTA 57.770 37.500 10.88 0.00 45.52 1.82
569 604 5.099042 AGTCTGACAAACCTTGTTGTAGT 57.901 39.130 10.88 0.00 45.52 2.73
570 605 6.258160 CAAAGTCTGACAAACCTTGTTGTAG 58.742 40.000 10.88 0.00 45.52 2.74
571 606 5.124776 CCAAAGTCTGACAAACCTTGTTGTA 59.875 40.000 10.88 0.00 45.52 2.41
572 607 4.082245 CCAAAGTCTGACAAACCTTGTTGT 60.082 41.667 10.88 0.00 45.52 3.32
573 608 4.082245 ACCAAAGTCTGACAAACCTTGTTG 60.082 41.667 10.88 1.67 45.52 3.33
574 609 4.082245 CACCAAAGTCTGACAAACCTTGTT 60.082 41.667 10.88 0.00 45.52 2.83
576 611 3.694072 TCACCAAAGTCTGACAAACCTTG 59.306 43.478 10.88 5.35 0.00 3.61
577 612 3.963129 TCACCAAAGTCTGACAAACCTT 58.037 40.909 10.88 0.00 0.00 3.50
578 613 3.644966 TCACCAAAGTCTGACAAACCT 57.355 42.857 10.88 0.00 0.00 3.50
579 614 3.066760 CCTTCACCAAAGTCTGACAAACC 59.933 47.826 10.88 0.00 32.69 3.27
580 615 3.945285 TCCTTCACCAAAGTCTGACAAAC 59.055 43.478 10.88 0.00 32.69 2.93
581 616 4.199310 CTCCTTCACCAAAGTCTGACAAA 58.801 43.478 10.88 0.00 32.69 2.83
582 617 3.433598 CCTCCTTCACCAAAGTCTGACAA 60.434 47.826 10.88 0.00 32.69 3.18
583 618 2.104792 CCTCCTTCACCAAAGTCTGACA 59.895 50.000 10.88 0.00 32.69 3.58
584 619 2.551071 CCCTCCTTCACCAAAGTCTGAC 60.551 54.545 0.00 0.00 32.69 3.51
585 620 1.699634 CCCTCCTTCACCAAAGTCTGA 59.300 52.381 0.00 0.00 32.69 3.27
586 621 1.884067 GCCCTCCTTCACCAAAGTCTG 60.884 57.143 0.00 0.00 32.69 3.51
587 622 0.402121 GCCCTCCTTCACCAAAGTCT 59.598 55.000 0.00 0.00 32.69 3.24
588 623 0.955919 CGCCCTCCTTCACCAAAGTC 60.956 60.000 0.00 0.00 32.69 3.01
589 624 1.073199 CGCCCTCCTTCACCAAAGT 59.927 57.895 0.00 0.00 32.69 2.66
590 625 0.035056 ATCGCCCTCCTTCACCAAAG 60.035 55.000 0.00 0.00 34.52 2.77
591 626 0.322456 CATCGCCCTCCTTCACCAAA 60.322 55.000 0.00 0.00 0.00 3.28
592 627 1.198094 TCATCGCCCTCCTTCACCAA 61.198 55.000 0.00 0.00 0.00 3.67
593 628 1.612146 TCATCGCCCTCCTTCACCA 60.612 57.895 0.00 0.00 0.00 4.17
594 629 1.153349 GTCATCGCCCTCCTTCACC 60.153 63.158 0.00 0.00 0.00 4.02
595 630 1.519455 CGTCATCGCCCTCCTTCAC 60.519 63.158 0.00 0.00 0.00 3.18
596 631 2.721167 CCGTCATCGCCCTCCTTCA 61.721 63.158 0.00 0.00 35.54 3.02
597 632 2.107141 CCGTCATCGCCCTCCTTC 59.893 66.667 0.00 0.00 35.54 3.46
598 633 2.683933 ACCGTCATCGCCCTCCTT 60.684 61.111 0.00 0.00 35.54 3.36
599 634 3.461773 CACCGTCATCGCCCTCCT 61.462 66.667 0.00 0.00 35.54 3.69
600 635 4.530857 CCACCGTCATCGCCCTCC 62.531 72.222 0.00 0.00 35.54 4.30
603 638 4.778143 AAGCCACCGTCATCGCCC 62.778 66.667 0.00 0.00 35.54 6.13
604 639 3.499737 CAAGCCACCGTCATCGCC 61.500 66.667 0.00 0.00 35.54 5.54
605 640 2.740714 GACAAGCCACCGTCATCGC 61.741 63.158 0.00 0.00 35.54 4.58
606 641 0.670546 AAGACAAGCCACCGTCATCG 60.671 55.000 0.00 0.00 34.48 3.84
607 642 1.197721 CAAAGACAAGCCACCGTCATC 59.802 52.381 0.00 0.00 34.48 2.92
608 643 1.202758 TCAAAGACAAGCCACCGTCAT 60.203 47.619 0.00 0.00 34.48 3.06
609 644 0.179234 TCAAAGACAAGCCACCGTCA 59.821 50.000 0.00 0.00 34.48 4.35
610 645 0.586802 GTCAAAGACAAGCCACCGTC 59.413 55.000 0.00 0.00 32.09 4.79
611 646 0.180406 AGTCAAAGACAAGCCACCGT 59.820 50.000 0.00 0.00 34.60 4.83
612 647 0.868406 GAGTCAAAGACAAGCCACCG 59.132 55.000 0.00 0.00 34.60 4.94
613 648 0.868406 CGAGTCAAAGACAAGCCACC 59.132 55.000 0.00 0.00 34.60 4.61
614 649 0.235926 GCGAGTCAAAGACAAGCCAC 59.764 55.000 0.00 0.00 34.60 5.01
615 650 0.106708 AGCGAGTCAAAGACAAGCCA 59.893 50.000 11.33 0.00 37.72 4.75
616 651 0.793250 GAGCGAGTCAAAGACAAGCC 59.207 55.000 11.33 3.09 37.72 4.35
617 652 1.789506 AGAGCGAGTCAAAGACAAGC 58.210 50.000 8.21 8.21 37.44 4.01
618 653 3.917380 CACTAGAGCGAGTCAAAGACAAG 59.083 47.826 0.00 0.00 34.60 3.16
619 654 3.857383 GCACTAGAGCGAGTCAAAGACAA 60.857 47.826 0.00 0.00 34.60 3.18
620 655 2.351835 GCACTAGAGCGAGTCAAAGACA 60.352 50.000 0.00 0.00 34.60 3.41
621 656 2.094957 AGCACTAGAGCGAGTCAAAGAC 60.095 50.000 6.51 0.00 40.15 3.01
622 657 2.163509 AGCACTAGAGCGAGTCAAAGA 58.836 47.619 6.51 0.00 40.15 2.52
623 658 2.645730 AGCACTAGAGCGAGTCAAAG 57.354 50.000 6.51 0.00 40.15 2.77
624 659 2.035961 ACAAGCACTAGAGCGAGTCAAA 59.964 45.455 6.51 0.00 40.15 2.69
625 660 1.613925 ACAAGCACTAGAGCGAGTCAA 59.386 47.619 6.51 0.00 40.15 3.18
626 661 1.248486 ACAAGCACTAGAGCGAGTCA 58.752 50.000 6.51 0.00 40.15 3.41
627 662 2.420722 ACTACAAGCACTAGAGCGAGTC 59.579 50.000 13.70 0.00 40.15 3.36
628 663 2.420722 GACTACAAGCACTAGAGCGAGT 59.579 50.000 14.45 14.45 40.15 4.18
629 664 2.420372 TGACTACAAGCACTAGAGCGAG 59.580 50.000 6.51 6.00 40.15 5.03
630 665 2.433436 TGACTACAAGCACTAGAGCGA 58.567 47.619 6.51 0.00 40.15 4.93
631 666 2.921634 TGACTACAAGCACTAGAGCG 57.078 50.000 6.51 0.00 40.15 5.03
632 667 3.308323 GCAATGACTACAAGCACTAGAGC 59.692 47.826 3.68 3.68 33.46 4.09
633 668 4.753233 AGCAATGACTACAAGCACTAGAG 58.247 43.478 0.00 0.00 34.91 2.43
634 669 4.808414 AGCAATGACTACAAGCACTAGA 57.192 40.909 0.00 0.00 34.91 2.43
635 670 5.046529 CCTAGCAATGACTACAAGCACTAG 58.953 45.833 0.00 0.00 34.91 2.57
636 671 4.466370 ACCTAGCAATGACTACAAGCACTA 59.534 41.667 0.00 0.00 34.91 2.74
637 672 3.261897 ACCTAGCAATGACTACAAGCACT 59.738 43.478 0.00 0.00 34.91 4.40
638 673 3.372206 CACCTAGCAATGACTACAAGCAC 59.628 47.826 0.00 0.00 34.91 4.40
639 674 3.599343 CACCTAGCAATGACTACAAGCA 58.401 45.455 0.00 0.00 34.91 3.91
640 675 2.939103 CCACCTAGCAATGACTACAAGC 59.061 50.000 0.00 0.00 0.00 4.01
641 676 4.184629 GACCACCTAGCAATGACTACAAG 58.815 47.826 0.00 0.00 0.00 3.16
642 677 3.055385 GGACCACCTAGCAATGACTACAA 60.055 47.826 0.00 0.00 0.00 2.41
643 678 2.500098 GGACCACCTAGCAATGACTACA 59.500 50.000 0.00 0.00 0.00 2.74
644 679 2.500098 TGGACCACCTAGCAATGACTAC 59.500 50.000 0.00 0.00 37.04 2.73
645 680 2.500098 GTGGACCACCTAGCAATGACTA 59.500 50.000 14.16 0.00 37.04 2.59
646 681 1.279271 GTGGACCACCTAGCAATGACT 59.721 52.381 14.16 0.00 37.04 3.41
647 682 1.003118 TGTGGACCACCTAGCAATGAC 59.997 52.381 22.00 0.00 37.04 3.06
648 683 1.278985 CTGTGGACCACCTAGCAATGA 59.721 52.381 22.00 0.00 37.04 2.57
649 684 1.278985 TCTGTGGACCACCTAGCAATG 59.721 52.381 22.00 2.59 37.04 2.82
650 685 1.279271 GTCTGTGGACCACCTAGCAAT 59.721 52.381 22.00 0.00 36.53 3.56
651 686 0.685097 GTCTGTGGACCACCTAGCAA 59.315 55.000 22.00 0.85 36.53 3.91
652 687 2.362242 GTCTGTGGACCACCTAGCA 58.638 57.895 22.00 1.70 36.53 3.49
661 696 6.575162 AAAATTACAATCAGGTCTGTGGAC 57.425 37.500 0.00 0.00 41.43 4.02
662 697 6.549364 ACAAAAATTACAATCAGGTCTGTGGA 59.451 34.615 0.00 0.00 0.00 4.02
663 698 6.748132 ACAAAAATTACAATCAGGTCTGTGG 58.252 36.000 0.00 0.00 0.00 4.17
664 699 9.180678 GTAACAAAAATTACAATCAGGTCTGTG 57.819 33.333 0.00 0.00 35.50 3.66
665 700 8.357402 GGTAACAAAAATTACAATCAGGTCTGT 58.643 33.333 0.00 0.00 36.87 3.41
666 701 8.576442 AGGTAACAAAAATTACAATCAGGTCTG 58.424 33.333 0.00 0.00 36.87 3.51
667 702 8.706322 AGGTAACAAAAATTACAATCAGGTCT 57.294 30.769 0.00 0.00 36.87 3.85
668 703 8.027189 GGAGGTAACAAAAATTACAATCAGGTC 58.973 37.037 0.00 0.00 36.87 3.85
669 704 7.507616 TGGAGGTAACAAAAATTACAATCAGGT 59.492 33.333 0.00 0.00 36.87 4.00
670 705 7.891561 TGGAGGTAACAAAAATTACAATCAGG 58.108 34.615 0.00 0.00 36.87 3.86
671 706 7.542130 GCTGGAGGTAACAAAAATTACAATCAG 59.458 37.037 0.00 0.00 36.87 2.90
672 707 7.375053 GCTGGAGGTAACAAAAATTACAATCA 58.625 34.615 0.00 0.00 36.87 2.57
673 708 6.526674 CGCTGGAGGTAACAAAAATTACAATC 59.473 38.462 0.00 0.00 36.87 2.67
674 709 6.015772 ACGCTGGAGGTAACAAAAATTACAAT 60.016 34.615 0.00 0.00 36.87 2.71
675 710 5.299782 ACGCTGGAGGTAACAAAAATTACAA 59.700 36.000 0.00 0.00 36.87 2.41
676 711 4.822896 ACGCTGGAGGTAACAAAAATTACA 59.177 37.500 0.00 0.00 36.87 2.41
677 712 5.366829 ACGCTGGAGGTAACAAAAATTAC 57.633 39.130 0.00 0.00 41.41 1.89
678 713 6.394025 AAACGCTGGAGGTAACAAAAATTA 57.606 33.333 0.00 0.00 41.41 1.40
679 714 4.929819 AACGCTGGAGGTAACAAAAATT 57.070 36.364 0.00 0.00 41.41 1.82
680 715 4.929819 AAACGCTGGAGGTAACAAAAAT 57.070 36.364 0.00 0.00 41.41 1.82
681 716 4.674475 GAAAACGCTGGAGGTAACAAAAA 58.326 39.130 0.00 0.00 41.41 1.94
682 717 3.242804 CGAAAACGCTGGAGGTAACAAAA 60.243 43.478 0.00 0.00 41.41 2.44
683 718 2.288458 CGAAAACGCTGGAGGTAACAAA 59.712 45.455 0.00 0.00 41.41 2.83
684 719 1.868498 CGAAAACGCTGGAGGTAACAA 59.132 47.619 0.00 0.00 41.41 2.83
685 720 1.202557 ACGAAAACGCTGGAGGTAACA 60.203 47.619 0.00 0.00 41.41 2.41
686 721 1.505425 ACGAAAACGCTGGAGGTAAC 58.495 50.000 0.00 0.00 0.00 2.50
687 722 2.297033 AGTACGAAAACGCTGGAGGTAA 59.703 45.455 0.00 0.00 0.00 2.85
688 723 1.888512 AGTACGAAAACGCTGGAGGTA 59.111 47.619 0.00 0.00 0.00 3.08
689 724 0.677842 AGTACGAAAACGCTGGAGGT 59.322 50.000 0.00 0.00 0.00 3.85
690 725 1.068474 CAGTACGAAAACGCTGGAGG 58.932 55.000 0.00 0.00 0.00 4.30
691 726 1.779569 ACAGTACGAAAACGCTGGAG 58.220 50.000 0.00 0.00 33.62 3.86
692 727 2.228138 AACAGTACGAAAACGCTGGA 57.772 45.000 0.00 0.00 33.62 3.86
693 728 3.676172 TCATAACAGTACGAAAACGCTGG 59.324 43.478 0.00 0.00 33.62 4.85
694 729 4.896562 TCATAACAGTACGAAAACGCTG 57.103 40.909 0.00 0.00 35.31 5.18
695 730 5.636121 TCAATCATAACAGTACGAAAACGCT 59.364 36.000 0.00 0.00 0.00 5.07
696 731 5.849858 TCAATCATAACAGTACGAAAACGC 58.150 37.500 0.00 0.00 0.00 4.84
761 801 9.770097 AATCTATTCATTATCATGACAGAACGT 57.230 29.630 0.00 0.00 39.28 3.99
815 866 9.787532 CATACACATCGTTTCCTCAATTTTTAT 57.212 29.630 0.00 0.00 0.00 1.40
860 911 3.187227 GTCATTGCTGCTCTTTTCTTCGA 59.813 43.478 0.00 0.00 0.00 3.71
878 929 1.380302 GCCCACTCCCAACTGTCAT 59.620 57.895 0.00 0.00 0.00 3.06
900 951 1.270094 TGTGTACCCTTCTCAACTGCG 60.270 52.381 0.00 0.00 0.00 5.18
961 1015 1.067821 GTTGGTGAGCTATCGAGGAGG 59.932 57.143 0.00 0.00 0.00 4.30
1011 1065 1.153568 CTCCATCGCGATGTGGTGT 60.154 57.895 38.53 9.39 37.11 4.16
1638 1692 1.183549 GCTCTTCCTCCACCGTCTTA 58.816 55.000 0.00 0.00 0.00 2.10
1711 1765 1.134491 TCACTGATGCTGCTGATCTGG 60.134 52.381 0.00 0.00 0.00 3.86
1712 1766 2.311124 TCACTGATGCTGCTGATCTG 57.689 50.000 0.00 3.43 0.00 2.90
1713 1767 3.562343 ATTCACTGATGCTGCTGATCT 57.438 42.857 0.00 0.00 0.00 2.75
1714 1768 3.303197 CGAATTCACTGATGCTGCTGATC 60.303 47.826 6.22 0.00 0.00 2.92
1715 1769 2.612672 CGAATTCACTGATGCTGCTGAT 59.387 45.455 6.22 0.00 0.00 2.90
1716 1770 2.004733 CGAATTCACTGATGCTGCTGA 58.995 47.619 6.22 0.00 0.00 4.26
1717 1771 2.004733 TCGAATTCACTGATGCTGCTG 58.995 47.619 6.22 0.00 0.00 4.41
1718 1772 2.391616 TCGAATTCACTGATGCTGCT 57.608 45.000 6.22 0.00 0.00 4.24
1719 1773 3.476295 TTTCGAATTCACTGATGCTGC 57.524 42.857 6.22 0.00 0.00 5.25
1720 1774 4.264614 GCAATTTCGAATTCACTGATGCTG 59.735 41.667 6.22 0.00 0.00 4.41
1721 1775 4.418392 GCAATTTCGAATTCACTGATGCT 58.582 39.130 6.22 0.00 0.00 3.79
1756 1810 2.734606 TCGGCAATTTCGTACAGACAAG 59.265 45.455 0.00 0.00 0.00 3.16
1776 1830 6.070481 AGGGATCTCTTAGTTCCAGAAACTTC 60.070 42.308 0.00 0.00 46.26 3.01
1808 1863 2.869801 TCATACATTCAAACGCGATCCC 59.130 45.455 15.93 0.00 0.00 3.85
1838 1893 5.536161 ACCTAGTTGAAGCAATGAAACATGT 59.464 36.000 0.00 0.00 0.00 3.21
1855 1910 5.888982 TCTTGGAAGAGAACAACCTAGTT 57.111 39.130 0.00 0.00 0.00 2.24
1881 1936 8.910944 CCAAAGATTCAATTAGTCCAAGATGAT 58.089 33.333 0.00 0.00 0.00 2.45
1894 1949 7.161773 ACATTCGACATCCAAAGATTCAATT 57.838 32.000 0.00 0.00 0.00 2.32
1920 1975 3.906720 TTTTGGAATCGGAGGGAGTAG 57.093 47.619 0.00 0.00 0.00 2.57
1921 1976 5.213519 TCTATTTTGGAATCGGAGGGAGTA 58.786 41.667 0.00 0.00 0.00 2.59
1922 1977 4.037927 TCTATTTTGGAATCGGAGGGAGT 58.962 43.478 0.00 0.00 0.00 3.85
1923 1978 4.689612 TCTATTTTGGAATCGGAGGGAG 57.310 45.455 0.00 0.00 0.00 4.30
1924 1979 4.658435 TCATCTATTTTGGAATCGGAGGGA 59.342 41.667 0.00 0.00 0.00 4.20
1925 1980 4.973168 TCATCTATTTTGGAATCGGAGGG 58.027 43.478 0.00 0.00 0.00 4.30
1926 1981 5.645497 GGATCATCTATTTTGGAATCGGAGG 59.355 44.000 0.00 0.00 0.00 4.30
1927 1982 6.233434 TGGATCATCTATTTTGGAATCGGAG 58.767 40.000 0.00 0.00 0.00 4.63
1928 1983 6.186420 TGGATCATCTATTTTGGAATCGGA 57.814 37.500 0.00 0.00 0.00 4.55
1929 1984 6.488006 AGTTGGATCATCTATTTTGGAATCGG 59.512 38.462 0.00 0.00 0.00 4.18
1930 1985 7.502120 AGTTGGATCATCTATTTTGGAATCG 57.498 36.000 0.00 0.00 0.00 3.34
1945 2000 9.787435 ACACAAAGTTAGTATAAAGTTGGATCA 57.213 29.630 0.00 0.00 0.00 2.92
1967 2022 9.850198 ACCCAACTTTATACTAACTTTAACACA 57.150 29.630 0.00 0.00 0.00 3.72
1979 2034 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
1980 2035 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
1981 2036 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
1982 2037 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
1983 2038 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
1984 2039 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1985 2040 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1986 2041 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1987 2042 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1988 2043 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1989 2044 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1990 2045 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1991 2046 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1992 2047 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1993 2048 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1994 2049 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1995 2050 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1996 2051 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1997 2052 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1998 2053 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
1999 2054 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2000 2055 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2001 2056 2.262637 ACATACTCCCTCCGTTCCAAA 58.737 47.619 0.00 0.00 0.00 3.28
2002 2057 1.946984 ACATACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
2003 2058 1.946984 AACATACTCCCTCCGTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
2004 2059 5.536260 GTTATAACATACTCCCTCCGTTCC 58.464 45.833 10.81 0.00 0.00 3.62
2005 2060 5.218139 CGTTATAACATACTCCCTCCGTTC 58.782 45.833 15.67 0.00 0.00 3.95
2006 2061 4.500375 GCGTTATAACATACTCCCTCCGTT 60.500 45.833 15.67 0.00 0.00 4.44
2007 2062 3.005155 GCGTTATAACATACTCCCTCCGT 59.995 47.826 15.67 0.00 0.00 4.69
2008 2063 3.005050 TGCGTTATAACATACTCCCTCCG 59.995 47.826 15.67 0.00 0.00 4.63
2009 2064 4.202182 TGTGCGTTATAACATACTCCCTCC 60.202 45.833 15.67 0.00 0.00 4.30
2010 2065 4.940463 TGTGCGTTATAACATACTCCCTC 58.060 43.478 15.67 0.00 0.00 4.30
2011 2066 5.546621 ATGTGCGTTATAACATACTCCCT 57.453 39.130 15.67 0.00 35.28 4.20
2012 2067 6.702723 TGTTATGTGCGTTATAACATACTCCC 59.297 38.462 15.67 4.85 42.76 4.30
2013 2068 7.703298 TGTTATGTGCGTTATAACATACTCC 57.297 36.000 15.67 4.58 42.76 3.85
2014 2069 9.580916 CATTGTTATGTGCGTTATAACATACTC 57.419 33.333 15.67 6.04 45.31 2.59
2015 2070 8.556194 CCATTGTTATGTGCGTTATAACATACT 58.444 33.333 15.67 6.47 45.31 2.12
2016 2071 8.552865 TCCATTGTTATGTGCGTTATAACATAC 58.447 33.333 15.67 12.85 45.31 2.39
2047 2102 4.287766 AGTTTCTGCTTCCCGAACTTAT 57.712 40.909 0.00 0.00 0.00 1.73
2053 2108 2.631062 TGTCTAAGTTTCTGCTTCCCGA 59.369 45.455 0.00 0.00 0.00 5.14
2054 2109 3.040147 TGTCTAAGTTTCTGCTTCCCG 57.960 47.619 0.00 0.00 0.00 5.14
2057 2131 8.909671 CATTCAAATTGTCTAAGTTTCTGCTTC 58.090 33.333 0.00 0.00 0.00 3.86
2060 2134 7.061557 GCTCATTCAAATTGTCTAAGTTTCTGC 59.938 37.037 0.00 0.00 0.00 4.26
2085 2159 4.935205 TGTCTGTGTCTATAACCAACATGC 59.065 41.667 0.00 0.00 0.00 4.06
2120 2194 4.142838 CGTTTCGGTCCCTGTAATTTAACC 60.143 45.833 0.00 0.00 0.00 2.85
2132 2206 2.589798 TGATACATCGTTTCGGTCCC 57.410 50.000 0.00 0.00 0.00 4.46
2166 3049 2.231721 GGTCACCTTGTGAGAGAGGTAC 59.768 54.545 0.00 0.00 44.28 3.34
2177 3060 3.642141 ACATTTTTCCTGGTCACCTTGT 58.358 40.909 0.00 0.00 0.00 3.16
2195 3078 3.054065 GTGAAGATTGAGGGGAGGAACAT 60.054 47.826 0.00 0.00 0.00 2.71
2196 3079 2.305927 GTGAAGATTGAGGGGAGGAACA 59.694 50.000 0.00 0.00 0.00 3.18
2197 3080 2.356227 GGTGAAGATTGAGGGGAGGAAC 60.356 54.545 0.00 0.00 0.00 3.62
2209 3092 1.218316 GGGCTCGTCGGTGAAGATT 59.782 57.895 0.00 0.00 0.00 2.40
2237 3142 2.595655 CCGAAATCCCCTCCCCAC 59.404 66.667 0.00 0.00 0.00 4.61
2238 3143 2.694616 CCCGAAATCCCCTCCCCA 60.695 66.667 0.00 0.00 0.00 4.96
2241 3146 2.124278 GCACCCGAAATCCCCTCC 60.124 66.667 0.00 0.00 0.00 4.30
2245 3150 2.440247 CCAGGCACCCGAAATCCC 60.440 66.667 0.00 0.00 0.00 3.85
2273 3203 0.661020 GTCAAAACGTCACCCCTGTG 59.339 55.000 0.00 0.00 44.18 3.66
2274 3204 0.812412 CGTCAAAACGTCACCCCTGT 60.812 55.000 0.00 0.00 43.94 4.00
2285 3215 1.347221 CGCCGCTATCCGTCAAAAC 59.653 57.895 0.00 0.00 34.38 2.43
2289 3219 3.768185 GAAGCGCCGCTATCCGTCA 62.768 63.158 14.02 0.00 38.25 4.35
2310 3240 1.139455 ACCCGAAAGACCGACTCAAAA 59.861 47.619 0.00 0.00 0.00 2.44
2313 3243 0.754472 AAACCCGAAAGACCGACTCA 59.246 50.000 0.00 0.00 0.00 3.41
2320 3250 9.409035 CTTGTAAAGGATCGAAACCCGAAAGAC 62.409 44.444 8.14 1.28 45.45 3.01
2341 3271 1.000060 CTCCCAACGGACGAACTTGTA 60.000 52.381 0.00 0.00 33.32 2.41
2349 3279 0.538118 TTAATCCCTCCCAACGGACG 59.462 55.000 0.00 0.00 33.32 4.79
2358 3288 1.202663 GGAGCTCCGTTTAATCCCTCC 60.203 57.143 19.06 0.00 0.00 4.30
2408 3338 1.014564 CGAGAAACCTCAACCTCGCC 61.015 60.000 0.00 0.00 41.31 5.54
2474 3405 3.304559 GTCGTCGTCATTGAATCCTTGAG 59.695 47.826 0.00 0.00 0.00 3.02
2487 3418 1.375140 AGAGCCGTAGTCGTCGTCA 60.375 57.895 0.00 0.00 35.01 4.35
2501 3432 4.228567 GGACTAGCGCCCCAGAGC 62.229 72.222 2.29 0.00 39.42 4.09
2505 3436 1.760875 CCTAAGGACTAGCGCCCCA 60.761 63.158 2.29 0.00 0.00 4.96
2512 3443 1.202698 GCATGTGCCCCTAAGGACTAG 60.203 57.143 0.00 0.00 38.24 2.57
2514 3445 1.207488 TGCATGTGCCCCTAAGGACT 61.207 55.000 2.07 0.00 41.18 3.85
2522 3453 2.359850 TCTTCGTGCATGTGCCCC 60.360 61.111 5.68 0.00 41.18 5.80
2524 3455 1.639298 GGAGTCTTCGTGCATGTGCC 61.639 60.000 5.68 0.00 41.18 5.01
2529 3460 1.067283 CAGTCAGGAGTCTTCGTGCAT 60.067 52.381 0.00 0.00 38.71 3.96
2542 3473 1.273606 ACCTTGTCGATGACAGTCAGG 59.726 52.381 9.64 12.41 43.69 3.86
2543 3474 2.029918 TGACCTTGTCGATGACAGTCAG 60.030 50.000 9.64 4.65 43.69 3.51
2544 3475 1.960689 TGACCTTGTCGATGACAGTCA 59.039 47.619 5.50 5.50 43.69 3.41
2555 3487 1.376553 GAGCCTGCCTGACCTTGTC 60.377 63.158 0.00 0.00 0.00 3.18
2565 3497 2.093537 CTCTCATACCGGAGCCTGCC 62.094 65.000 9.46 0.00 34.84 4.85
2566 3498 1.365633 CTCTCATACCGGAGCCTGC 59.634 63.158 9.46 0.00 34.84 4.85
2588 3520 1.225104 CGTCAACGCGTCATTGTCG 60.225 57.895 14.44 13.49 33.58 4.35
2596 3528 4.936823 AACGAGCCGTCAACGCGT 62.937 61.111 5.58 5.58 39.99 6.01
2629 3561 2.344025 GTTCATGGACCACCTAACGAC 58.656 52.381 0.00 0.00 37.04 4.34
2630 3562 1.276989 GGTTCATGGACCACCTAACGA 59.723 52.381 19.09 0.00 39.57 3.85
2631 3563 1.278127 AGGTTCATGGACCACCTAACG 59.722 52.381 25.54 0.00 42.35 3.18
2632 3564 2.677037 CGAGGTTCATGGACCACCTAAC 60.677 54.545 25.54 7.94 41.26 2.34
2633 3565 1.553248 CGAGGTTCATGGACCACCTAA 59.447 52.381 25.54 0.00 41.26 2.69
2634 3566 1.191535 CGAGGTTCATGGACCACCTA 58.808 55.000 25.54 0.00 41.26 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.