Multiple sequence alignment - TraesCS6B01G290600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G290600 chr6B 100.000 5201 0 0 1 5201 523046579 523051779 0.000000e+00 9605.0
1 TraesCS6B01G290600 chr6B 97.692 130 3 0 3079 3208 523049530 523049659 1.880000e-54 224.0
2 TraesCS6B01G290600 chr6B 97.692 130 3 0 2952 3081 523049657 523049786 1.880000e-54 224.0
3 TraesCS6B01G290600 chr6A 95.961 2278 70 11 811 3078 486821171 486823436 0.000000e+00 3677.0
4 TraesCS6B01G290600 chr6A 90.685 1782 91 29 3241 5001 486823555 486825282 0.000000e+00 2302.0
5 TraesCS6B01G290600 chr6A 87.321 489 17 15 1 444 486820193 486820681 7.720000e-143 518.0
6 TraesCS6B01G290600 chr6A 95.652 115 5 0 5023 5137 486825881 486825995 8.890000e-43 185.0
7 TraesCS6B01G290600 chr6A 92.248 129 5 2 72 195 486819243 486819371 1.490000e-40 178.0
8 TraesCS6B01G290600 chr6D 94.782 2338 86 11 747 3057 355016432 355014104 0.000000e+00 3609.0
9 TraesCS6B01G290600 chr6D 92.970 1835 82 18 3082 4910 355014207 355012414 0.000000e+00 2630.0
10 TraesCS6B01G290600 chr6D 92.063 504 15 13 1 479 355017276 355016773 0.000000e+00 686.0
11 TraesCS6B01G290600 chr6D 85.340 191 15 8 4949 5128 355012404 355012216 8.890000e-43 185.0
12 TraesCS6B01G290600 chr6D 91.603 131 6 2 70 195 355018331 355018201 5.350000e-40 176.0
13 TraesCS6B01G290600 chr6D 90.741 54 3 2 5149 5201 427120552 427120500 2.600000e-08 71.3
14 TraesCS6B01G290600 chr3D 94.000 100 4 2 1078 1176 41056179 41056277 3.240000e-32 150.0
15 TraesCS6B01G290600 chr5D 92.553 94 5 2 1084 1176 88361866 88361774 3.270000e-27 134.0
16 TraesCS6B01G290600 chr2B 91.489 47 4 0 5155 5201 648906713 648906759 1.210000e-06 65.8
17 TraesCS6B01G290600 chr2B 92.308 39 3 0 5157 5195 653658238 653658276 7.280000e-04 56.5
18 TraesCS6B01G290600 chr4B 92.308 39 3 0 5157 5195 444356244 444356282 7.280000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G290600 chr6B 523046579 523051779 5200 False 3351.0 9605 98.461333 1 5201 3 chr6B.!!$F1 5200
1 TraesCS6B01G290600 chr6A 486819243 486825995 6752 False 1372.0 3677 92.373400 1 5137 5 chr6A.!!$F1 5136
2 TraesCS6B01G290600 chr6D 355012216 355018331 6115 True 1457.2 3609 91.351600 1 5128 5 chr6D.!!$R2 5127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 1699 0.040781 TTTTTCGCACTTACGCCAGC 60.041 50.000 0.00 0.0 0.00 4.85 F
604 1708 0.179134 CTTACGCCAGCGCTAAGTCT 60.179 55.000 10.99 0.0 44.19 3.24 F
605 1709 0.179145 TTACGCCAGCGCTAAGTCTC 60.179 55.000 10.99 0.0 44.19 3.36 F
709 1813 0.244994 TCTCTTCTCAACGCTCTGCC 59.755 55.000 0.00 0.0 0.00 4.85 F
1254 2492 0.685097 TGCCGCAAAACTACTCCTCT 59.315 50.000 0.00 0.0 0.00 3.69 F
1272 2510 1.354337 CTGCGTTCCACACATCCTCG 61.354 60.000 0.00 0.0 0.00 4.63 F
2013 3251 1.471501 GCAGCATACCTCGACATGACA 60.472 52.381 0.00 0.0 0.00 3.58 F
2022 3260 2.188524 CTCGACATGACAGACCAATCG 58.811 52.381 0.00 0.0 33.02 3.34 F
2876 4139 2.232452 AGTCCAGAGGATCAAACGTGAG 59.768 50.000 0.00 0.0 37.14 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 3029 0.536460 GGCCGGAACCTGAAAAGTCA 60.536 55.000 5.05 0.00 0.00 3.41 R
1929 3167 0.835276 CATGATCCCTCACTGCTGGA 59.165 55.000 0.00 0.00 33.22 3.86 R
2013 3251 1.059913 GGGATCCCATCGATTGGTCT 58.940 55.000 26.95 4.51 44.83 3.85 R
2685 3948 1.968493 GGGTGTGACTCTGACCAACTA 59.032 52.381 0.00 0.00 0.00 2.24 R
3099 4362 0.251564 CCCAACCAAGCCATACCACA 60.252 55.000 0.00 0.00 0.00 4.17 R
3100 4363 0.251608 ACCCAACCAAGCCATACCAC 60.252 55.000 0.00 0.00 0.00 4.16 R
3102 4365 0.251608 ACACCCAACCAAGCCATACC 60.252 55.000 0.00 0.00 0.00 2.73 R
3106 4369 1.063567 AGTAAACACCCAACCAAGCCA 60.064 47.619 0.00 0.00 0.00 4.75 R
4766 6136 0.666274 TATTGCGCGCGGAATAGGAG 60.666 55.000 40.65 10.53 37.37 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 1117 5.929992 CCCGTTGTAAACTGTAATCTTCTCA 59.070 40.000 0.00 0.00 46.99 3.27
256 1347 0.179113 TCCCGTCCGCCGTAATTAAC 60.179 55.000 0.00 0.00 33.66 2.01
333 1424 3.966543 CCACCCACCACCCCACTC 61.967 72.222 0.00 0.00 0.00 3.51
335 1426 4.525028 ACCCACCACCCCACTCCA 62.525 66.667 0.00 0.00 0.00 3.86
337 1428 4.329545 CCACCACCCCACTCCACG 62.330 72.222 0.00 0.00 0.00 4.94
338 1429 3.556306 CACCACCCCACTCCACGT 61.556 66.667 0.00 0.00 0.00 4.49
424 1528 2.115052 TGCCAGGTGCGGACAAAT 59.885 55.556 9.96 0.00 45.60 2.32
428 1532 1.002134 CAGGTGCGGACAAATCCCT 60.002 57.895 9.96 0.00 42.83 4.20
533 1637 3.827898 GGTCCTCCCTCGCTCGTG 61.828 72.222 0.00 0.00 0.00 4.35
534 1638 4.500116 GTCCTCCCTCGCTCGTGC 62.500 72.222 0.00 0.00 0.00 5.34
554 1658 4.662961 CACGGTCAGTCGCTGCCA 62.663 66.667 14.98 0.00 31.42 4.92
555 1659 3.923864 ACGGTCAGTCGCTGCCAA 61.924 61.111 14.98 0.00 31.42 4.52
556 1660 2.664851 CGGTCAGTCGCTGCCAAA 60.665 61.111 14.98 0.00 31.42 3.28
557 1661 2.034879 CGGTCAGTCGCTGCCAAAT 61.035 57.895 14.98 0.00 31.42 2.32
558 1662 1.577328 CGGTCAGTCGCTGCCAAATT 61.577 55.000 14.98 0.00 31.42 1.82
559 1663 0.169009 GGTCAGTCGCTGCCAAATTC 59.831 55.000 0.00 0.00 31.42 2.17
560 1664 0.179215 GTCAGTCGCTGCCAAATTCG 60.179 55.000 0.00 0.00 0.00 3.34
561 1665 1.135315 CAGTCGCTGCCAAATTCGG 59.865 57.895 0.00 0.00 0.00 4.30
562 1666 1.003839 AGTCGCTGCCAAATTCGGA 60.004 52.632 0.00 0.00 0.00 4.55
563 1667 0.392998 AGTCGCTGCCAAATTCGGAT 60.393 50.000 0.00 0.00 0.00 4.18
564 1668 0.248215 GTCGCTGCCAAATTCGGATG 60.248 55.000 0.00 0.00 0.00 3.51
565 1669 0.676466 TCGCTGCCAAATTCGGATGT 60.676 50.000 0.00 0.00 0.00 3.06
566 1670 0.248215 CGCTGCCAAATTCGGATGTC 60.248 55.000 0.00 0.00 0.00 3.06
567 1671 0.810648 GCTGCCAAATTCGGATGTCA 59.189 50.000 0.00 0.00 0.00 3.58
568 1672 1.202114 GCTGCCAAATTCGGATGTCAA 59.798 47.619 0.00 0.00 0.00 3.18
569 1673 2.352617 GCTGCCAAATTCGGATGTCAAA 60.353 45.455 0.00 0.00 0.00 2.69
570 1674 3.676873 GCTGCCAAATTCGGATGTCAAAT 60.677 43.478 0.00 0.00 0.00 2.32
571 1675 4.497300 CTGCCAAATTCGGATGTCAAATT 58.503 39.130 0.00 0.00 0.00 1.82
572 1676 4.892433 TGCCAAATTCGGATGTCAAATTT 58.108 34.783 0.00 0.00 33.94 1.82
573 1677 4.689812 TGCCAAATTCGGATGTCAAATTTG 59.310 37.500 12.15 12.15 44.34 2.32
574 1678 4.435917 GCCAAATTCGGATGTCAAATTTGC 60.436 41.667 13.54 9.16 43.81 3.68
575 1679 4.201608 CCAAATTCGGATGTCAAATTTGCG 60.202 41.667 13.54 10.57 43.81 4.85
576 1680 3.848272 ATTCGGATGTCAAATTTGCGT 57.152 38.095 13.54 9.75 0.00 5.24
577 1681 3.634568 TTCGGATGTCAAATTTGCGTT 57.365 38.095 13.54 0.02 0.00 4.84
578 1682 3.634568 TCGGATGTCAAATTTGCGTTT 57.365 38.095 13.54 0.00 0.00 3.60
579 1683 3.971150 TCGGATGTCAAATTTGCGTTTT 58.029 36.364 13.54 0.00 0.00 2.43
580 1684 4.363999 TCGGATGTCAAATTTGCGTTTTT 58.636 34.783 13.54 0.00 0.00 1.94
581 1685 4.442733 TCGGATGTCAAATTTGCGTTTTTC 59.557 37.500 13.54 4.53 0.00 2.29
582 1686 4.660414 CGGATGTCAAATTTGCGTTTTTCG 60.660 41.667 13.54 7.37 43.12 3.46
592 1696 2.691486 CGTTTTTCGCACTTACGCC 58.309 52.632 0.00 0.00 0.00 5.68
593 1697 0.042013 CGTTTTTCGCACTTACGCCA 60.042 50.000 0.00 0.00 0.00 5.69
594 1698 1.670326 GTTTTTCGCACTTACGCCAG 58.330 50.000 0.00 0.00 0.00 4.85
595 1699 0.040781 TTTTTCGCACTTACGCCAGC 60.041 50.000 0.00 0.00 0.00 4.85
599 1703 2.508439 GCACTTACGCCAGCGCTA 60.508 61.111 10.99 0.00 44.19 4.26
600 1704 2.098233 GCACTTACGCCAGCGCTAA 61.098 57.895 10.99 0.00 44.19 3.09
601 1705 1.999051 CACTTACGCCAGCGCTAAG 59.001 57.895 10.99 21.67 44.19 2.18
602 1706 0.736325 CACTTACGCCAGCGCTAAGT 60.736 55.000 22.53 22.53 41.70 2.24
603 1707 0.458025 ACTTACGCCAGCGCTAAGTC 60.458 55.000 22.53 0.00 44.19 3.01
604 1708 0.179134 CTTACGCCAGCGCTAAGTCT 60.179 55.000 10.99 0.00 44.19 3.24
605 1709 0.179145 TTACGCCAGCGCTAAGTCTC 60.179 55.000 10.99 0.00 44.19 3.36
606 1710 2.001361 TACGCCAGCGCTAAGTCTCC 62.001 60.000 10.99 0.00 44.19 3.71
607 1711 2.896443 GCCAGCGCTAAGTCTCCT 59.104 61.111 10.99 0.00 0.00 3.69
608 1712 1.227118 GCCAGCGCTAAGTCTCCTC 60.227 63.158 10.99 0.00 0.00 3.71
609 1713 1.439644 CCAGCGCTAAGTCTCCTCC 59.560 63.158 10.99 0.00 0.00 4.30
610 1714 1.040339 CCAGCGCTAAGTCTCCTCCT 61.040 60.000 10.99 0.00 0.00 3.69
611 1715 0.383949 CAGCGCTAAGTCTCCTCCTC 59.616 60.000 10.99 0.00 0.00 3.71
612 1716 0.753848 AGCGCTAAGTCTCCTCCTCC 60.754 60.000 8.99 0.00 0.00 4.30
613 1717 1.740332 GCGCTAAGTCTCCTCCTCCC 61.740 65.000 0.00 0.00 0.00 4.30
614 1718 1.110518 CGCTAAGTCTCCTCCTCCCC 61.111 65.000 0.00 0.00 0.00 4.81
615 1719 0.761323 GCTAAGTCTCCTCCTCCCCC 60.761 65.000 0.00 0.00 0.00 5.40
631 1735 0.483770 CCCCCTCTACTCTACTCCCC 59.516 65.000 0.00 0.00 0.00 4.81
632 1736 1.536644 CCCCTCTACTCTACTCCCCT 58.463 60.000 0.00 0.00 0.00 4.79
633 1737 1.426215 CCCCTCTACTCTACTCCCCTC 59.574 61.905 0.00 0.00 0.00 4.30
634 1738 1.426215 CCCTCTACTCTACTCCCCTCC 59.574 61.905 0.00 0.00 0.00 4.30
635 1739 2.424793 CCTCTACTCTACTCCCCTCCT 58.575 57.143 0.00 0.00 0.00 3.69
636 1740 2.787035 CCTCTACTCTACTCCCCTCCTT 59.213 54.545 0.00 0.00 0.00 3.36
637 1741 3.205733 CCTCTACTCTACTCCCCTCCTTT 59.794 52.174 0.00 0.00 0.00 3.11
638 1742 4.211920 CTCTACTCTACTCCCCTCCTTTG 58.788 52.174 0.00 0.00 0.00 2.77
639 1743 3.596956 TCTACTCTACTCCCCTCCTTTGT 59.403 47.826 0.00 0.00 0.00 2.83
640 1744 3.277416 ACTCTACTCCCCTCCTTTGTT 57.723 47.619 0.00 0.00 0.00 2.83
641 1745 4.415224 ACTCTACTCCCCTCCTTTGTTA 57.585 45.455 0.00 0.00 0.00 2.41
642 1746 4.354662 ACTCTACTCCCCTCCTTTGTTAG 58.645 47.826 0.00 0.00 0.00 2.34
643 1747 4.202803 ACTCTACTCCCCTCCTTTGTTAGT 60.203 45.833 0.00 0.00 0.00 2.24
644 1748 4.094476 TCTACTCCCCTCCTTTGTTAGTG 58.906 47.826 0.00 0.00 0.00 2.74
645 1749 2.702748 ACTCCCCTCCTTTGTTAGTGT 58.297 47.619 0.00 0.00 0.00 3.55
646 1750 2.372172 ACTCCCCTCCTTTGTTAGTGTG 59.628 50.000 0.00 0.00 0.00 3.82
647 1751 1.073284 TCCCCTCCTTTGTTAGTGTGC 59.927 52.381 0.00 0.00 0.00 4.57
648 1752 1.202879 CCCCTCCTTTGTTAGTGTGCA 60.203 52.381 0.00 0.00 0.00 4.57
649 1753 1.880027 CCCTCCTTTGTTAGTGTGCAC 59.120 52.381 10.75 10.75 0.00 4.57
650 1754 2.571212 CCTCCTTTGTTAGTGTGCACA 58.429 47.619 17.42 17.42 0.00 4.57
651 1755 3.149196 CCTCCTTTGTTAGTGTGCACAT 58.851 45.455 24.69 14.26 0.00 3.21
652 1756 3.189287 CCTCCTTTGTTAGTGTGCACATC 59.811 47.826 24.69 16.29 0.00 3.06
653 1757 3.814625 TCCTTTGTTAGTGTGCACATCA 58.185 40.909 24.69 16.34 0.00 3.07
654 1758 3.563808 TCCTTTGTTAGTGTGCACATCAC 59.436 43.478 24.69 19.09 45.82 3.06
655 1759 3.565482 CCTTTGTTAGTGTGCACATCACT 59.435 43.478 24.69 17.71 45.81 3.41
656 1760 4.530388 CTTTGTTAGTGTGCACATCACTG 58.470 43.478 24.69 10.76 45.81 3.66
657 1761 3.467374 TGTTAGTGTGCACATCACTGA 57.533 42.857 24.69 9.58 45.81 3.41
658 1762 3.130633 TGTTAGTGTGCACATCACTGAC 58.869 45.455 24.69 20.78 45.86 3.51
659 1763 3.130633 GTTAGTGTGCACATCACTGACA 58.869 45.455 24.69 0.00 45.37 3.58
660 1764 1.875009 AGTGTGCACATCACTGACAG 58.125 50.000 24.69 0.00 45.81 3.51
661 1765 0.870393 GTGTGCACATCACTGACAGG 59.130 55.000 24.69 0.00 45.81 4.00
662 1766 0.758123 TGTGCACATCACTGACAGGA 59.242 50.000 17.42 1.78 45.81 3.86
663 1767 1.270465 TGTGCACATCACTGACAGGAG 60.270 52.381 17.42 0.00 45.81 3.69
664 1768 1.051008 TGCACATCACTGACAGGAGT 58.949 50.000 7.51 0.00 0.00 3.85
665 1769 1.270465 TGCACATCACTGACAGGAGTG 60.270 52.381 7.51 10.26 44.14 3.51
673 1777 4.790765 CACTGACAGGAGTGAACATAGA 57.209 45.455 7.51 0.00 45.39 1.98
674 1778 5.139435 CACTGACAGGAGTGAACATAGAA 57.861 43.478 7.51 0.00 45.39 2.10
675 1779 5.541845 CACTGACAGGAGTGAACATAGAAA 58.458 41.667 7.51 0.00 45.39 2.52
676 1780 5.991606 CACTGACAGGAGTGAACATAGAAAA 59.008 40.000 7.51 0.00 45.39 2.29
677 1781 5.992217 ACTGACAGGAGTGAACATAGAAAAC 59.008 40.000 7.51 0.00 0.00 2.43
678 1782 6.174720 TGACAGGAGTGAACATAGAAAACT 57.825 37.500 0.00 0.00 0.00 2.66
679 1783 6.223852 TGACAGGAGTGAACATAGAAAACTC 58.776 40.000 0.00 0.00 37.20 3.01
684 1788 5.167303 AGTGAACATAGAAAACTCCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
685 1789 4.019231 AGTGAACATAGAAAACTCCCTCCC 60.019 45.833 0.00 0.00 0.00 4.30
686 1790 4.019231 GTGAACATAGAAAACTCCCTCCCT 60.019 45.833 0.00 0.00 0.00 4.20
687 1791 4.225267 TGAACATAGAAAACTCCCTCCCTC 59.775 45.833 0.00 0.00 0.00 4.30
688 1792 4.081695 ACATAGAAAACTCCCTCCCTCT 57.918 45.455 0.00 0.00 0.00 3.69
689 1793 4.034410 ACATAGAAAACTCCCTCCCTCTC 58.966 47.826 0.00 0.00 0.00 3.20
690 1794 4.265078 ACATAGAAAACTCCCTCCCTCTCT 60.265 45.833 0.00 0.00 0.00 3.10
691 1795 2.827755 AGAAAACTCCCTCCCTCTCTC 58.172 52.381 0.00 0.00 0.00 3.20
692 1796 2.385417 AGAAAACTCCCTCCCTCTCTCT 59.615 50.000 0.00 0.00 0.00 3.10
693 1797 2.543037 AAACTCCCTCCCTCTCTCTC 57.457 55.000 0.00 0.00 0.00 3.20
694 1798 1.693799 AACTCCCTCCCTCTCTCTCT 58.306 55.000 0.00 0.00 0.00 3.10
695 1799 1.693799 ACTCCCTCCCTCTCTCTCTT 58.306 55.000 0.00 0.00 0.00 2.85
696 1800 1.569072 ACTCCCTCCCTCTCTCTCTTC 59.431 57.143 0.00 0.00 0.00 2.87
697 1801 1.852965 CTCCCTCCCTCTCTCTCTTCT 59.147 57.143 0.00 0.00 0.00 2.85
698 1802 1.850345 TCCCTCCCTCTCTCTCTTCTC 59.150 57.143 0.00 0.00 0.00 2.87
699 1803 1.568597 CCCTCCCTCTCTCTCTTCTCA 59.431 57.143 0.00 0.00 0.00 3.27
700 1804 2.024464 CCCTCCCTCTCTCTCTTCTCAA 60.024 54.545 0.00 0.00 0.00 3.02
701 1805 3.023832 CCTCCCTCTCTCTCTTCTCAAC 58.976 54.545 0.00 0.00 0.00 3.18
702 1806 2.682856 CTCCCTCTCTCTCTTCTCAACG 59.317 54.545 0.00 0.00 0.00 4.10
703 1807 1.134175 CCCTCTCTCTCTTCTCAACGC 59.866 57.143 0.00 0.00 0.00 4.84
704 1808 2.091541 CCTCTCTCTCTTCTCAACGCT 58.908 52.381 0.00 0.00 0.00 5.07
705 1809 2.097466 CCTCTCTCTCTTCTCAACGCTC 59.903 54.545 0.00 0.00 0.00 5.03
706 1810 3.009723 CTCTCTCTCTTCTCAACGCTCT 58.990 50.000 0.00 0.00 0.00 4.09
707 1811 2.746904 TCTCTCTCTTCTCAACGCTCTG 59.253 50.000 0.00 0.00 0.00 3.35
708 1812 1.201181 TCTCTCTTCTCAACGCTCTGC 59.799 52.381 0.00 0.00 0.00 4.26
709 1813 0.244994 TCTCTTCTCAACGCTCTGCC 59.755 55.000 0.00 0.00 0.00 4.85
710 1814 0.739112 CTCTTCTCAACGCTCTGCCC 60.739 60.000 0.00 0.00 0.00 5.36
711 1815 1.743252 CTTCTCAACGCTCTGCCCC 60.743 63.158 0.00 0.00 0.00 5.80
712 1816 2.454832 CTTCTCAACGCTCTGCCCCA 62.455 60.000 0.00 0.00 0.00 4.96
713 1817 2.032528 CTCAACGCTCTGCCCCAA 59.967 61.111 0.00 0.00 0.00 4.12
714 1818 1.377725 CTCAACGCTCTGCCCCAAT 60.378 57.895 0.00 0.00 0.00 3.16
715 1819 1.372087 CTCAACGCTCTGCCCCAATC 61.372 60.000 0.00 0.00 0.00 2.67
716 1820 2.044946 AACGCTCTGCCCCAATCC 60.045 61.111 0.00 0.00 0.00 3.01
717 1821 3.645268 AACGCTCTGCCCCAATCCC 62.645 63.158 0.00 0.00 0.00 3.85
718 1822 4.883354 CGCTCTGCCCCAATCCCC 62.883 72.222 0.00 0.00 0.00 4.81
719 1823 4.529731 GCTCTGCCCCAATCCCCC 62.530 72.222 0.00 0.00 0.00 5.40
720 1824 3.023116 CTCTGCCCCAATCCCCCA 61.023 66.667 0.00 0.00 0.00 4.96
721 1825 3.346734 TCTGCCCCAATCCCCCAC 61.347 66.667 0.00 0.00 0.00 4.61
722 1826 4.463788 CTGCCCCAATCCCCCACC 62.464 72.222 0.00 0.00 0.00 4.61
784 1961 3.878667 CCCCAATCTCTCCCCGCC 61.879 72.222 0.00 0.00 0.00 6.13
953 2191 4.779733 TCTGCTCCCTCCCCGTCC 62.780 72.222 0.00 0.00 0.00 4.79
965 2203 2.358737 CCGTCCTTGCTTCGCCTT 60.359 61.111 0.00 0.00 0.00 4.35
966 2204 2.391389 CCGTCCTTGCTTCGCCTTC 61.391 63.158 0.00 0.00 0.00 3.46
1116 2354 1.517257 CCACTCCTTCTGCTACGCG 60.517 63.158 3.53 3.53 0.00 6.01
1254 2492 0.685097 TGCCGCAAAACTACTCCTCT 59.315 50.000 0.00 0.00 0.00 3.69
1272 2510 1.354337 CTGCGTTCCACACATCCTCG 61.354 60.000 0.00 0.00 0.00 4.63
1770 3008 2.202932 CAGTTCCTCGCCGATGGG 60.203 66.667 0.00 0.00 0.00 4.00
1791 3029 3.941483 GGGATGACGATGACAATGAACTT 59.059 43.478 0.00 0.00 0.00 2.66
1929 3167 3.336122 CAAGAAGTTGGAGGCAGCT 57.664 52.632 0.00 0.00 0.00 4.24
2013 3251 1.471501 GCAGCATACCTCGACATGACA 60.472 52.381 0.00 0.00 0.00 3.58
2022 3260 2.188524 CTCGACATGACAGACCAATCG 58.811 52.381 0.00 0.00 33.02 3.34
2437 3698 3.070734 AGCTTCTGTCATTGTCTGTGAGT 59.929 43.478 0.00 0.00 0.00 3.41
2446 3707 5.641209 GTCATTGTCTGTGAGTAATCTGCTT 59.359 40.000 0.00 0.00 0.00 3.91
2527 3788 9.294030 GATCAAACCATCACATTATTGTTCTTC 57.706 33.333 0.00 0.00 32.34 2.87
2534 3795 4.019681 TCACATTATTGTTCTTCTCCGGGT 60.020 41.667 0.00 0.00 32.34 5.28
2537 3798 5.414765 ACATTATTGTTCTTCTCCGGGTTTC 59.585 40.000 0.00 0.00 29.55 2.78
2550 3811 4.861196 TCCGGGTTTCCATTCATATTTCA 58.139 39.130 0.00 0.00 0.00 2.69
2614 3875 7.657761 TGAAAGCTTTAAAGTTGAAACACCAAA 59.342 29.630 12.68 0.00 0.00 3.28
2685 3948 8.815912 ACTTGTTATCCTTGATGCCTTATTTTT 58.184 29.630 0.00 0.00 0.00 1.94
2762 4025 5.612725 TCCATTTCCATTGCCCTTATTTC 57.387 39.130 0.00 0.00 0.00 2.17
2858 4121 8.462016 AGTATTTGTTTTGATATGCAGGAAGTC 58.538 33.333 0.00 0.00 0.00 3.01
2876 4139 2.232452 AGTCCAGAGGATCAAACGTGAG 59.768 50.000 0.00 0.00 37.14 3.51
2976 4239 4.576463 GGTATCTCAAGCAGGTAATTGTGG 59.424 45.833 0.00 0.00 0.00 4.17
3057 4320 7.887996 TTTTGCCTGATAGCAGTTTATTTTG 57.112 32.000 7.31 0.00 45.13 2.44
3058 4321 6.588719 TTGCCTGATAGCAGTTTATTTTGT 57.411 33.333 7.31 0.00 45.13 2.83
3059 4322 6.588719 TGCCTGATAGCAGTTTATTTTGTT 57.411 33.333 7.31 0.00 40.63 2.83
3060 4323 6.389091 TGCCTGATAGCAGTTTATTTTGTTG 58.611 36.000 7.31 0.00 40.63 3.33
3061 4324 5.807011 GCCTGATAGCAGTTTATTTTGTTGG 59.193 40.000 7.31 0.00 40.63 3.77
3062 4325 5.807011 CCTGATAGCAGTTTATTTTGTTGGC 59.193 40.000 7.31 0.00 40.63 4.52
3063 4326 6.350445 CCTGATAGCAGTTTATTTTGTTGGCT 60.350 38.462 7.31 0.00 40.63 4.75
3064 4327 7.148086 CCTGATAGCAGTTTATTTTGTTGGCTA 60.148 37.037 7.31 0.00 40.63 3.93
3065 4328 8.116651 TGATAGCAGTTTATTTTGTTGGCTAA 57.883 30.769 0.00 0.00 36.35 3.09
3066 4329 8.580720 TGATAGCAGTTTATTTTGTTGGCTAAA 58.419 29.630 0.00 0.00 36.35 1.85
3067 4330 9.418045 GATAGCAGTTTATTTTGTTGGCTAAAA 57.582 29.630 0.00 0.00 36.35 1.52
3068 4331 9.771534 ATAGCAGTTTATTTTGTTGGCTAAAAA 57.228 25.926 0.00 0.00 36.35 1.94
3101 4364 6.299805 TGAGTATCTCAAGCAGGTAATTGT 57.700 37.500 0.00 0.00 37.57 2.71
3102 4365 6.108687 TGAGTATCTCAAGCAGGTAATTGTG 58.891 40.000 0.00 0.00 37.57 3.33
3103 4366 5.431765 AGTATCTCAAGCAGGTAATTGTGG 58.568 41.667 0.00 0.00 0.00 4.17
3104 4367 3.788227 TCTCAAGCAGGTAATTGTGGT 57.212 42.857 0.00 0.00 0.00 4.16
3105 4368 4.901197 TCTCAAGCAGGTAATTGTGGTA 57.099 40.909 0.00 0.00 0.00 3.25
3106 4369 5.435686 TCTCAAGCAGGTAATTGTGGTAT 57.564 39.130 0.00 0.00 0.00 2.73
3107 4370 5.185454 TCTCAAGCAGGTAATTGTGGTATG 58.815 41.667 0.00 0.00 0.00 2.39
3108 4371 4.269183 TCAAGCAGGTAATTGTGGTATGG 58.731 43.478 0.00 0.00 0.00 2.74
3109 4372 2.654863 AGCAGGTAATTGTGGTATGGC 58.345 47.619 0.00 0.00 0.00 4.40
3110 4373 2.242196 AGCAGGTAATTGTGGTATGGCT 59.758 45.455 0.00 0.00 0.00 4.75
3111 4374 3.023832 GCAGGTAATTGTGGTATGGCTT 58.976 45.455 0.00 0.00 0.00 4.35
3112 4375 3.181487 GCAGGTAATTGTGGTATGGCTTG 60.181 47.826 0.00 0.00 0.00 4.01
3113 4376 3.381272 CAGGTAATTGTGGTATGGCTTGG 59.619 47.826 0.00 0.00 0.00 3.61
3114 4377 3.011257 AGGTAATTGTGGTATGGCTTGGT 59.989 43.478 0.00 0.00 0.00 3.67
3115 4378 3.767131 GGTAATTGTGGTATGGCTTGGTT 59.233 43.478 0.00 0.00 0.00 3.67
3116 4379 3.959535 AATTGTGGTATGGCTTGGTTG 57.040 42.857 0.00 0.00 0.00 3.77
3117 4380 1.626686 TTGTGGTATGGCTTGGTTGG 58.373 50.000 0.00 0.00 0.00 3.77
3118 4381 0.251564 TGTGGTATGGCTTGGTTGGG 60.252 55.000 0.00 0.00 0.00 4.12
3119 4382 0.251608 GTGGTATGGCTTGGTTGGGT 60.252 55.000 0.00 0.00 0.00 4.51
3120 4383 0.251564 TGGTATGGCTTGGTTGGGTG 60.252 55.000 0.00 0.00 0.00 4.61
3121 4384 0.251608 GGTATGGCTTGGTTGGGTGT 60.252 55.000 0.00 0.00 0.00 4.16
3122 4385 1.627864 GTATGGCTTGGTTGGGTGTT 58.372 50.000 0.00 0.00 0.00 3.32
3123 4386 1.967779 GTATGGCTTGGTTGGGTGTTT 59.032 47.619 0.00 0.00 0.00 2.83
3124 4387 2.390225 ATGGCTTGGTTGGGTGTTTA 57.610 45.000 0.00 0.00 0.00 2.01
3125 4388 1.404843 TGGCTTGGTTGGGTGTTTAC 58.595 50.000 0.00 0.00 0.00 2.01
3126 4389 1.063567 TGGCTTGGTTGGGTGTTTACT 60.064 47.619 0.00 0.00 0.00 2.24
3127 4390 2.175069 TGGCTTGGTTGGGTGTTTACTA 59.825 45.455 0.00 0.00 0.00 1.82
3128 4391 3.224269 GGCTTGGTTGGGTGTTTACTAA 58.776 45.455 0.00 0.00 0.00 2.24
3129 4392 3.254903 GGCTTGGTTGGGTGTTTACTAAG 59.745 47.826 0.00 0.00 34.62 2.18
3130 4393 4.139038 GCTTGGTTGGGTGTTTACTAAGA 58.861 43.478 0.00 0.00 33.70 2.10
3131 4394 4.765339 GCTTGGTTGGGTGTTTACTAAGAT 59.235 41.667 0.00 0.00 33.70 2.40
3132 4395 5.106277 GCTTGGTTGGGTGTTTACTAAGATC 60.106 44.000 0.00 0.00 33.70 2.75
3133 4396 5.836024 TGGTTGGGTGTTTACTAAGATCT 57.164 39.130 0.00 0.00 0.00 2.75
3134 4397 6.195600 TGGTTGGGTGTTTACTAAGATCTT 57.804 37.500 13.56 13.56 0.00 2.40
3135 4398 6.607019 TGGTTGGGTGTTTACTAAGATCTTT 58.393 36.000 14.36 0.00 0.00 2.52
3136 4399 7.747690 TGGTTGGGTGTTTACTAAGATCTTTA 58.252 34.615 14.36 0.00 0.00 1.85
3137 4400 8.219178 TGGTTGGGTGTTTACTAAGATCTTTAA 58.781 33.333 14.36 4.38 0.00 1.52
3138 4401 8.509690 GGTTGGGTGTTTACTAAGATCTTTAAC 58.490 37.037 14.36 12.85 0.00 2.01
3139 4402 8.509690 GTTGGGTGTTTACTAAGATCTTTAACC 58.490 37.037 14.36 10.41 0.00 2.85
3140 4403 7.170277 TGGGTGTTTACTAAGATCTTTAACCC 58.830 38.462 14.36 17.87 42.24 4.11
3141 4404 7.017850 TGGGTGTTTACTAAGATCTTTAACCCT 59.982 37.037 14.36 0.00 42.36 4.34
3142 4405 8.542926 GGGTGTTTACTAAGATCTTTAACCCTA 58.457 37.037 14.36 0.00 39.42 3.53
3143 4406 9.376075 GGTGTTTACTAAGATCTTTAACCCTAC 57.624 37.037 14.36 6.40 0.00 3.18
3148 4411 9.986157 TTACTAAGATCTTTAACCCTACTCTCA 57.014 33.333 14.36 0.00 0.00 3.27
3153 4416 9.495382 AAGATCTTTAACCCTACTCTCATAGTT 57.505 33.333 0.88 0.00 39.80 2.24
3154 4417 9.138596 AGATCTTTAACCCTACTCTCATAGTTC 57.861 37.037 0.00 0.00 39.80 3.01
3155 4418 8.840200 ATCTTTAACCCTACTCTCATAGTTCA 57.160 34.615 0.00 0.00 39.80 3.18
3156 4419 8.840200 TCTTTAACCCTACTCTCATAGTTCAT 57.160 34.615 0.00 0.00 39.80 2.57
3157 4420 9.268282 TCTTTAACCCTACTCTCATAGTTCATT 57.732 33.333 0.00 0.00 39.80 2.57
3158 4421 9.892130 CTTTAACCCTACTCTCATAGTTCATTT 57.108 33.333 0.00 0.00 39.80 2.32
3505 4851 6.459670 TTATATCAGTACCTGAGCAACGAA 57.540 37.500 0.00 0.00 44.08 3.85
3565 4911 0.674581 CTGAAGGCGATCCAGCACAA 60.675 55.000 0.00 0.00 39.27 3.33
3689 5036 9.829507 TCTTGATTTGTTTTTATGTGACCATTT 57.170 25.926 0.00 0.00 32.29 2.32
3748 5095 1.335780 TGGTCACGTGCAAATTCATGC 60.336 47.619 11.67 0.00 46.58 4.06
3830 5193 8.668510 AAGTTATCTTTACCAGATAGCACATG 57.331 34.615 8.02 0.00 44.44 3.21
3857 5220 5.425539 AGTCAAAATTCCTAGCTAGGCTACA 59.574 40.000 31.76 14.42 43.31 2.74
3883 5246 7.175641 ACAAATTTAGATTGTCTCTGTGAAGGG 59.824 37.037 0.00 0.00 36.28 3.95
3884 5247 5.825593 TTTAGATTGTCTCTGTGAAGGGT 57.174 39.130 0.00 0.00 35.28 4.34
3897 5260 4.691860 GTGAAGGGTCTCACATGATTTG 57.308 45.455 0.00 0.00 44.32 2.32
3921 5284 4.331968 TCATTTTCTTCCAACCGTATGCT 58.668 39.130 0.00 0.00 0.00 3.79
3924 5287 6.601613 TCATTTTCTTCCAACCGTATGCTATT 59.398 34.615 0.00 0.00 0.00 1.73
3938 5301 7.661437 ACCGTATGCTATTTCACATTGATACAT 59.339 33.333 0.00 0.00 0.00 2.29
3974 5337 4.339247 GGTCATTGGCTTATTGCTATGTGT 59.661 41.667 0.00 0.00 42.39 3.72
3975 5338 5.163519 GGTCATTGGCTTATTGCTATGTGTT 60.164 40.000 0.00 0.00 42.39 3.32
3988 5351 4.394610 TGCTATGTGTTGATGCATTACGTT 59.605 37.500 0.00 0.00 0.00 3.99
3994 5357 6.767080 TGTGTTGATGCATTACGTTATACAC 58.233 36.000 12.47 12.47 34.37 2.90
4011 5374 3.577805 ACACCTAAGCTGGTTTGAGTT 57.422 42.857 0.00 0.00 38.45 3.01
4012 5375 4.699925 ACACCTAAGCTGGTTTGAGTTA 57.300 40.909 0.00 0.00 38.45 2.24
4013 5376 4.642429 ACACCTAAGCTGGTTTGAGTTAG 58.358 43.478 0.00 0.00 38.45 2.34
4054 5417 3.138304 GTTTTGATCTGTTTTTGCCCCC 58.862 45.455 0.00 0.00 0.00 5.40
4055 5418 2.397044 TTGATCTGTTTTTGCCCCCT 57.603 45.000 0.00 0.00 0.00 4.79
4209 5572 4.697352 GGAACTTATGTGTGATGTTCAGCT 59.303 41.667 0.00 0.00 38.82 4.24
4367 5731 7.928307 TGCATTTCTAAAAGCTGTATTCTCT 57.072 32.000 4.53 0.00 34.04 3.10
4379 5743 3.885901 CTGTATTCTCTGATCGGAGACCA 59.114 47.826 30.01 23.70 42.51 4.02
4406 5770 0.820226 TCCAGATCTCAGGTTCAGCG 59.180 55.000 0.00 0.00 0.00 5.18
4415 5779 0.929824 CAGGTTCAGCGCAAAACACG 60.930 55.000 21.53 11.11 0.00 4.49
4491 5858 7.432869 CAATCCCTGTCAGATTAGAGTTAGAG 58.567 42.308 0.00 0.00 32.70 2.43
4532 5899 0.446222 CAGCGTTAATTGGTCACGGG 59.554 55.000 0.00 0.00 34.42 5.28
4537 5904 2.610976 CGTTAATTGGTCACGGGACTCA 60.611 50.000 18.98 11.31 43.77 3.41
4596 5966 7.404671 TGTAGAAGGTTTGCTTCTTTTCTTT 57.595 32.000 0.00 0.00 41.00 2.52
4609 5979 1.620822 TTTCTTTCCTTGCTGGGAGC 58.379 50.000 0.00 0.00 42.82 4.70
4612 5982 2.469465 CTTTCCTTGCTGGGAGCGGA 62.469 60.000 0.00 0.00 46.26 5.54
4615 5985 2.665000 CTTGCTGGGAGCGGAAGA 59.335 61.111 0.00 0.00 46.26 2.87
4627 5997 1.901085 CGGAAGAAGACCTCTGGGG 59.099 63.158 0.00 0.00 41.89 4.96
4693 6063 0.322546 GGGCCCGAACTGTTCTTCAT 60.323 55.000 5.69 0.00 0.00 2.57
4694 6064 1.087501 GGCCCGAACTGTTCTTCATC 58.912 55.000 17.60 3.51 0.00 2.92
4695 6065 1.610624 GGCCCGAACTGTTCTTCATCA 60.611 52.381 17.60 0.00 0.00 3.07
4756 6126 0.966920 TTGTCTTCCTCGACCCTGAC 59.033 55.000 0.00 0.00 32.97 3.51
4757 6127 0.178973 TGTCTTCCTCGACCCTGACA 60.179 55.000 0.00 0.00 32.97 3.58
4766 6136 0.602905 CGACCCTGACAGTTGGGAAC 60.603 60.000 16.86 10.30 46.15 3.62
4795 6165 1.343510 GCGCGCAATAGCAAGCAAAA 61.344 50.000 29.10 0.00 42.27 2.44
4800 6170 1.632422 CAATAGCAAGCAAAAGCCCG 58.368 50.000 0.00 0.00 0.00 6.13
4832 6202 3.079131 GCATAAGGTGGCGTCATCA 57.921 52.632 1.71 0.00 0.00 3.07
4842 6212 2.910360 CGTCATCATGGGCCTGGA 59.090 61.111 4.53 2.06 0.00 3.86
4878 6248 3.775654 GGTGGTGAGGCGGAGGAG 61.776 72.222 0.00 0.00 0.00 3.69
4883 6253 1.079057 GTGAGGCGGAGGAGGAAAC 60.079 63.158 0.00 0.00 0.00 2.78
4885 6255 0.836400 TGAGGCGGAGGAGGAAACTT 60.836 55.000 0.00 0.00 44.43 2.66
4886 6256 1.192428 GAGGCGGAGGAGGAAACTTA 58.808 55.000 0.00 0.00 44.43 2.24
4887 6257 1.137282 GAGGCGGAGGAGGAAACTTAG 59.863 57.143 0.00 0.00 44.43 2.18
4888 6258 0.178301 GGCGGAGGAGGAAACTTAGG 59.822 60.000 0.00 0.00 44.43 2.69
4889 6259 0.178301 GCGGAGGAGGAAACTTAGGG 59.822 60.000 0.00 0.00 44.43 3.53
4890 6260 0.831307 CGGAGGAGGAAACTTAGGGG 59.169 60.000 0.00 0.00 44.43 4.79
4891 6261 1.900337 CGGAGGAGGAAACTTAGGGGT 60.900 57.143 0.00 0.00 44.43 4.95
4892 6262 2.276391 GGAGGAGGAAACTTAGGGGTT 58.724 52.381 0.00 0.00 44.43 4.11
4925 6295 2.282251 TCACCGCCGTCAGAGAGT 60.282 61.111 0.00 0.00 0.00 3.24
4927 6297 3.374402 ACCGCCGTCAGAGAGTGG 61.374 66.667 0.00 0.00 37.20 4.00
4929 6299 3.374402 CGCCGTCAGAGAGTGGGT 61.374 66.667 0.00 0.00 0.00 4.51
4930 6300 2.932234 CGCCGTCAGAGAGTGGGTT 61.932 63.158 0.00 0.00 0.00 4.11
4931 6301 1.592400 CGCCGTCAGAGAGTGGGTTA 61.592 60.000 0.00 0.00 0.00 2.85
4932 6302 0.173708 GCCGTCAGAGAGTGGGTTAG 59.826 60.000 0.00 0.00 0.00 2.34
4933 6303 1.546961 CCGTCAGAGAGTGGGTTAGT 58.453 55.000 0.00 0.00 0.00 2.24
4934 6304 1.202582 CCGTCAGAGAGTGGGTTAGTG 59.797 57.143 0.00 0.00 0.00 2.74
4935 6305 1.202582 CGTCAGAGAGTGGGTTAGTGG 59.797 57.143 0.00 0.00 0.00 4.00
4936 6306 1.550976 GTCAGAGAGTGGGTTAGTGGG 59.449 57.143 0.00 0.00 0.00 4.61
4939 6309 1.196012 GAGAGTGGGTTAGTGGGGAG 58.804 60.000 0.00 0.00 0.00 4.30
4941 6311 0.252558 GAGTGGGTTAGTGGGGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
4942 6312 0.546988 AGTGGGTTAGTGGGGAGGAC 60.547 60.000 0.00 0.00 0.00 3.85
4945 6315 2.183555 GTTAGTGGGGAGGACGCG 59.816 66.667 3.53 3.53 34.15 6.01
4946 6316 3.072468 TTAGTGGGGAGGACGCGG 61.072 66.667 12.47 0.00 34.15 6.46
4947 6317 3.892104 TTAGTGGGGAGGACGCGGT 62.892 63.158 12.47 0.00 34.15 5.68
5008 6378 3.462678 GGAGGGCGGTGAGGTCTC 61.463 72.222 0.00 0.00 0.00 3.36
5010 6380 1.985116 GAGGGCGGTGAGGTCTCTT 60.985 63.158 0.00 0.00 0.00 2.85
5013 6383 1.985116 GGCGGTGAGGTCTCTTCCT 60.985 63.158 0.00 0.00 40.97 3.36
5086 7035 1.303309 CTATTCGAGGCCCAGCTTTG 58.697 55.000 0.00 0.00 0.00 2.77
5105 7054 1.718757 GCAAGATTCGGCCGATGCTT 61.719 55.000 33.44 30.44 37.74 3.91
5108 7057 0.392998 AGATTCGGCCGATGCTTTGT 60.393 50.000 31.56 9.06 37.74 2.83
5137 7086 0.032952 TTCGAAGACAGTTGGGACCG 59.967 55.000 0.00 0.00 34.32 4.79
5138 7087 1.374252 CGAAGACAGTTGGGACCGG 60.374 63.158 0.00 0.00 0.00 5.28
5139 7088 1.812686 CGAAGACAGTTGGGACCGGA 61.813 60.000 9.46 0.00 0.00 5.14
5140 7089 0.395312 GAAGACAGTTGGGACCGGAA 59.605 55.000 9.46 0.00 0.00 4.30
5141 7090 0.841289 AAGACAGTTGGGACCGGAAA 59.159 50.000 9.46 0.00 0.00 3.13
5142 7091 0.841289 AGACAGTTGGGACCGGAAAA 59.159 50.000 9.46 0.00 0.00 2.29
5143 7092 1.423921 AGACAGTTGGGACCGGAAAAT 59.576 47.619 9.46 0.00 0.00 1.82
5144 7093 1.810755 GACAGTTGGGACCGGAAAATC 59.189 52.381 9.46 0.00 0.00 2.17
5145 7094 1.173913 CAGTTGGGACCGGAAAATCC 58.826 55.000 9.46 3.83 0.00 3.01
5159 7108 4.524053 GGAAAATCCCGAAATCACTAGGT 58.476 43.478 0.00 0.00 0.00 3.08
5160 7109 4.948004 GGAAAATCCCGAAATCACTAGGTT 59.052 41.667 0.00 0.00 0.00 3.50
5161 7110 5.163652 GGAAAATCCCGAAATCACTAGGTTG 60.164 44.000 0.00 0.00 0.00 3.77
5162 7111 2.396590 TCCCGAAATCACTAGGTTGC 57.603 50.000 0.00 0.00 0.00 4.17
5163 7112 1.065709 TCCCGAAATCACTAGGTTGCC 60.066 52.381 0.00 0.00 0.00 4.52
5164 7113 1.006832 CCGAAATCACTAGGTTGCCG 58.993 55.000 0.00 0.00 0.00 5.69
5165 7114 0.373716 CGAAATCACTAGGTTGCCGC 59.626 55.000 0.00 0.00 0.00 6.53
5166 7115 1.448985 GAAATCACTAGGTTGCCGCA 58.551 50.000 0.00 0.00 0.00 5.69
5167 7116 1.810151 GAAATCACTAGGTTGCCGCAA 59.190 47.619 0.38 0.38 0.00 4.85
5168 7117 1.453155 AATCACTAGGTTGCCGCAAG 58.547 50.000 5.91 0.00 0.00 4.01
5169 7118 0.324943 ATCACTAGGTTGCCGCAAGT 59.675 50.000 5.91 0.00 0.00 3.16
5170 7119 0.602638 TCACTAGGTTGCCGCAAGTG 60.603 55.000 14.30 14.30 36.06 3.16
5171 7120 1.302511 ACTAGGTTGCCGCAAGTGG 60.303 57.895 5.91 1.68 0.00 4.00
5191 7140 2.745100 CGCTGCATGTGCTCCACT 60.745 61.111 6.55 0.00 42.66 4.00
5192 7141 2.330372 CGCTGCATGTGCTCCACTT 61.330 57.895 6.55 0.00 42.66 3.16
5193 7142 1.211969 GCTGCATGTGCTCCACTTG 59.788 57.895 6.55 6.82 40.80 3.16
5194 7143 1.521450 GCTGCATGTGCTCCACTTGT 61.521 55.000 6.55 0.00 40.25 3.16
5195 7144 0.520404 CTGCATGTGCTCCACTTGTC 59.480 55.000 6.55 6.14 40.25 3.18
5196 7145 0.179023 TGCATGTGCTCCACTTGTCA 60.179 50.000 6.55 7.99 40.25 3.58
5197 7146 0.239347 GCATGTGCTCCACTTGTCAC 59.761 55.000 11.31 0.00 40.25 3.67
5198 7147 1.596603 CATGTGCTCCACTTGTCACA 58.403 50.000 0.00 0.00 42.66 3.58
5199 7148 1.948834 CATGTGCTCCACTTGTCACAA 59.051 47.619 0.00 0.00 41.92 3.33
5200 7149 1.378531 TGTGCTCCACTTGTCACAAC 58.621 50.000 0.00 0.00 36.62 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.809619 CATGTGAATCGCCCGACGT 60.810 57.895 0.00 0.00 44.19 4.34
120 1187 3.160748 GGGCTCCTCTGCTCTCCC 61.161 72.222 0.00 0.00 0.00 4.30
242 1333 1.143620 CGGGGTTAATTACGGCGGA 59.856 57.895 13.24 0.00 0.00 5.54
337 1428 2.202401 GCGAGACCCGTGACGTAC 60.202 66.667 3.64 0.00 41.15 3.67
338 1429 2.359107 AGCGAGACCCGTGACGTA 60.359 61.111 3.64 0.00 41.15 3.57
424 1528 3.016613 TATGGCGGAGTGGGAGGGA 62.017 63.158 0.00 0.00 0.00 4.20
428 1532 3.151710 CGGTATGGCGGAGTGGGA 61.152 66.667 0.00 0.00 0.00 4.37
516 1620 3.827898 CACGAGCGAGGGAGGACC 61.828 72.222 0.00 0.00 40.67 4.46
517 1621 4.500116 GCACGAGCGAGGGAGGAC 62.500 72.222 0.00 0.00 0.00 3.85
537 1641 4.662961 TGGCAGCGACTGACCGTG 62.663 66.667 9.73 0.00 39.07 4.94
538 1642 2.731691 ATTTGGCAGCGACTGACCGT 62.732 55.000 9.73 0.00 39.07 4.83
539 1643 1.577328 AATTTGGCAGCGACTGACCG 61.577 55.000 9.73 0.00 39.07 4.79
540 1644 0.169009 GAATTTGGCAGCGACTGACC 59.831 55.000 9.73 10.35 39.07 4.02
541 1645 0.179215 CGAATTTGGCAGCGACTGAC 60.179 55.000 10.46 8.19 40.49 3.51
542 1646 1.298157 CCGAATTTGGCAGCGACTGA 61.298 55.000 10.46 0.00 32.44 3.41
543 1647 1.135315 CCGAATTTGGCAGCGACTG 59.865 57.895 0.00 2.92 34.12 3.51
544 1648 0.392998 ATCCGAATTTGGCAGCGACT 60.393 50.000 6.88 0.00 0.00 4.18
545 1649 0.248215 CATCCGAATTTGGCAGCGAC 60.248 55.000 6.88 0.00 0.00 5.19
546 1650 0.676466 ACATCCGAATTTGGCAGCGA 60.676 50.000 6.88 0.00 0.00 4.93
547 1651 0.248215 GACATCCGAATTTGGCAGCG 60.248 55.000 6.88 0.00 0.00 5.18
548 1652 0.810648 TGACATCCGAATTTGGCAGC 59.189 50.000 6.88 0.00 0.00 5.25
549 1653 3.574284 TTTGACATCCGAATTTGGCAG 57.426 42.857 6.88 4.42 31.20 4.85
550 1654 4.533919 AATTTGACATCCGAATTTGGCA 57.466 36.364 6.88 0.00 35.79 4.92
554 1658 4.555262 ACGCAAATTTGACATCCGAATTT 58.445 34.783 22.31 0.00 45.29 1.82
555 1659 4.173036 ACGCAAATTTGACATCCGAATT 57.827 36.364 22.31 0.00 39.86 2.17
556 1660 3.848272 ACGCAAATTTGACATCCGAAT 57.152 38.095 22.31 0.00 0.00 3.34
557 1661 3.634568 AACGCAAATTTGACATCCGAA 57.365 38.095 22.31 0.00 0.00 4.30
558 1662 3.634568 AAACGCAAATTTGACATCCGA 57.365 38.095 22.31 0.00 0.00 4.55
559 1663 4.660414 CGAAAAACGCAAATTTGACATCCG 60.660 41.667 22.31 16.36 34.51 4.18
560 1664 4.687047 CGAAAAACGCAAATTTGACATCC 58.313 39.130 22.31 2.62 34.51 3.51
574 1678 0.042013 TGGCGTAAGTGCGAAAAACG 60.042 50.000 0.00 0.00 42.41 3.60
575 1679 1.670326 CTGGCGTAAGTGCGAAAAAC 58.330 50.000 0.00 0.00 41.68 2.43
576 1680 0.040781 GCTGGCGTAAGTGCGAAAAA 60.041 50.000 0.00 0.00 41.68 1.94
577 1681 1.572447 GCTGGCGTAAGTGCGAAAA 59.428 52.632 0.00 0.00 41.68 2.29
578 1682 3.249999 GCTGGCGTAAGTGCGAAA 58.750 55.556 0.00 0.00 41.68 3.46
583 1687 0.736325 ACTTAGCGCTGGCGTAAGTG 60.736 55.000 22.90 14.09 46.35 3.16
584 1688 0.458025 GACTTAGCGCTGGCGTAAGT 60.458 55.000 26.05 26.05 46.35 2.24
585 1689 0.179134 AGACTTAGCGCTGGCGTAAG 60.179 55.000 22.90 17.61 46.35 2.34
586 1690 0.179145 GAGACTTAGCGCTGGCGTAA 60.179 55.000 22.90 4.52 46.35 3.18
587 1691 1.432251 GAGACTTAGCGCTGGCGTA 59.568 57.895 22.90 0.00 46.35 4.42
588 1692 2.182030 GAGACTTAGCGCTGGCGT 59.818 61.111 22.90 14.06 46.35 5.68
589 1693 2.583593 GGAGACTTAGCGCTGGCG 60.584 66.667 22.90 10.80 46.35 5.69
590 1694 1.227118 GAGGAGACTTAGCGCTGGC 60.227 63.158 22.90 6.26 44.43 4.85
591 1695 1.040339 AGGAGGAGACTTAGCGCTGG 61.040 60.000 22.90 15.34 44.43 4.85
592 1696 0.383949 GAGGAGGAGACTTAGCGCTG 59.616 60.000 22.90 6.70 44.43 5.18
593 1697 0.753848 GGAGGAGGAGACTTAGCGCT 60.754 60.000 17.26 17.26 44.43 5.92
594 1698 1.737201 GGAGGAGGAGACTTAGCGC 59.263 63.158 0.00 0.00 44.43 5.92
595 1699 1.110518 GGGGAGGAGGAGACTTAGCG 61.111 65.000 0.00 0.00 44.43 4.26
596 1700 0.761323 GGGGGAGGAGGAGACTTAGC 60.761 65.000 0.00 0.00 44.43 3.09
597 1701 3.543112 GGGGGAGGAGGAGACTTAG 57.457 63.158 0.00 0.00 44.43 2.18
612 1716 0.483770 GGGGAGTAGAGTAGAGGGGG 59.516 65.000 0.00 0.00 0.00 5.40
613 1717 1.426215 GAGGGGAGTAGAGTAGAGGGG 59.574 61.905 0.00 0.00 0.00 4.79
614 1718 1.426215 GGAGGGGAGTAGAGTAGAGGG 59.574 61.905 0.00 0.00 0.00 4.30
615 1719 2.424793 AGGAGGGGAGTAGAGTAGAGG 58.575 57.143 0.00 0.00 0.00 3.69
616 1720 4.211920 CAAAGGAGGGGAGTAGAGTAGAG 58.788 52.174 0.00 0.00 0.00 2.43
617 1721 3.596956 ACAAAGGAGGGGAGTAGAGTAGA 59.403 47.826 0.00 0.00 0.00 2.59
618 1722 3.983821 ACAAAGGAGGGGAGTAGAGTAG 58.016 50.000 0.00 0.00 0.00 2.57
619 1723 4.415224 AACAAAGGAGGGGAGTAGAGTA 57.585 45.455 0.00 0.00 0.00 2.59
620 1724 3.277416 AACAAAGGAGGGGAGTAGAGT 57.723 47.619 0.00 0.00 0.00 3.24
621 1725 4.160626 CACTAACAAAGGAGGGGAGTAGAG 59.839 50.000 0.00 0.00 0.00 2.43
622 1726 4.094476 CACTAACAAAGGAGGGGAGTAGA 58.906 47.826 0.00 0.00 0.00 2.59
623 1727 3.838903 ACACTAACAAAGGAGGGGAGTAG 59.161 47.826 0.00 0.00 0.00 2.57
624 1728 3.581332 CACACTAACAAAGGAGGGGAGTA 59.419 47.826 0.00 0.00 0.00 2.59
625 1729 2.372172 CACACTAACAAAGGAGGGGAGT 59.628 50.000 0.00 0.00 0.00 3.85
626 1730 2.876079 GCACACTAACAAAGGAGGGGAG 60.876 54.545 0.00 0.00 0.00 4.30
627 1731 1.073284 GCACACTAACAAAGGAGGGGA 59.927 52.381 0.00 0.00 0.00 4.81
628 1732 1.202879 TGCACACTAACAAAGGAGGGG 60.203 52.381 0.00 0.00 0.00 4.79
629 1733 1.880027 GTGCACACTAACAAAGGAGGG 59.120 52.381 13.17 0.00 0.00 4.30
630 1734 2.571212 TGTGCACACTAACAAAGGAGG 58.429 47.619 17.42 0.00 0.00 4.30
631 1735 3.814842 TGATGTGCACACTAACAAAGGAG 59.185 43.478 24.37 0.00 0.00 3.69
632 1736 3.563808 GTGATGTGCACACTAACAAAGGA 59.436 43.478 24.37 0.00 46.91 3.36
633 1737 3.888934 GTGATGTGCACACTAACAAAGG 58.111 45.455 24.37 0.00 46.91 3.11
644 1748 3.439197 CACTCCTGTCAGTGATGTGCAC 61.439 54.545 10.75 10.75 45.92 4.57
645 1749 1.051008 ACTCCTGTCAGTGATGTGCA 58.949 50.000 0.00 0.00 0.00 4.57
646 1750 1.001293 TCACTCCTGTCAGTGATGTGC 59.999 52.381 0.00 0.00 46.43 4.57
652 1756 4.790765 TCTATGTTCACTCCTGTCAGTG 57.209 45.455 0.00 0.00 44.61 3.66
653 1757 5.808366 TTTCTATGTTCACTCCTGTCAGT 57.192 39.130 0.00 0.00 0.00 3.41
654 1758 6.226787 AGTTTTCTATGTTCACTCCTGTCAG 58.773 40.000 0.00 0.00 0.00 3.51
655 1759 6.174720 AGTTTTCTATGTTCACTCCTGTCA 57.825 37.500 0.00 0.00 0.00 3.58
656 1760 5.639931 GGAGTTTTCTATGTTCACTCCTGTC 59.360 44.000 9.05 0.00 46.94 3.51
657 1761 5.552178 GGAGTTTTCTATGTTCACTCCTGT 58.448 41.667 9.05 0.00 46.94 4.00
661 1765 5.179533 GGAGGGAGTTTTCTATGTTCACTC 58.820 45.833 0.00 0.00 37.54 3.51
662 1766 4.019231 GGGAGGGAGTTTTCTATGTTCACT 60.019 45.833 0.00 0.00 0.00 3.41
663 1767 4.019231 AGGGAGGGAGTTTTCTATGTTCAC 60.019 45.833 0.00 0.00 0.00 3.18
664 1768 4.175962 AGGGAGGGAGTTTTCTATGTTCA 58.824 43.478 0.00 0.00 0.00 3.18
665 1769 4.471747 AGAGGGAGGGAGTTTTCTATGTTC 59.528 45.833 0.00 0.00 0.00 3.18
666 1770 4.439860 AGAGGGAGGGAGTTTTCTATGTT 58.560 43.478 0.00 0.00 0.00 2.71
667 1771 4.034410 GAGAGGGAGGGAGTTTTCTATGT 58.966 47.826 0.00 0.00 0.00 2.29
668 1772 4.294347 AGAGAGGGAGGGAGTTTTCTATG 58.706 47.826 0.00 0.00 0.00 2.23
669 1773 4.234223 AGAGAGAGGGAGGGAGTTTTCTAT 59.766 45.833 0.00 0.00 0.00 1.98
670 1774 3.598782 AGAGAGAGGGAGGGAGTTTTCTA 59.401 47.826 0.00 0.00 0.00 2.10
671 1775 2.385417 AGAGAGAGGGAGGGAGTTTTCT 59.615 50.000 0.00 0.00 0.00 2.52
672 1776 2.764010 GAGAGAGAGGGAGGGAGTTTTC 59.236 54.545 0.00 0.00 0.00 2.29
673 1777 2.385417 AGAGAGAGAGGGAGGGAGTTTT 59.615 50.000 0.00 0.00 0.00 2.43
674 1778 2.007636 AGAGAGAGAGGGAGGGAGTTT 58.992 52.381 0.00 0.00 0.00 2.66
675 1779 1.693799 AGAGAGAGAGGGAGGGAGTT 58.306 55.000 0.00 0.00 0.00 3.01
676 1780 1.569072 GAAGAGAGAGAGGGAGGGAGT 59.431 57.143 0.00 0.00 0.00 3.85
677 1781 1.852965 AGAAGAGAGAGAGGGAGGGAG 59.147 57.143 0.00 0.00 0.00 4.30
678 1782 1.850345 GAGAAGAGAGAGAGGGAGGGA 59.150 57.143 0.00 0.00 0.00 4.20
679 1783 1.568597 TGAGAAGAGAGAGAGGGAGGG 59.431 57.143 0.00 0.00 0.00 4.30
680 1784 3.023832 GTTGAGAAGAGAGAGAGGGAGG 58.976 54.545 0.00 0.00 0.00 4.30
681 1785 2.682856 CGTTGAGAAGAGAGAGAGGGAG 59.317 54.545 0.00 0.00 0.00 4.30
682 1786 2.717390 CGTTGAGAAGAGAGAGAGGGA 58.283 52.381 0.00 0.00 0.00 4.20
683 1787 1.134175 GCGTTGAGAAGAGAGAGAGGG 59.866 57.143 0.00 0.00 0.00 4.30
684 1788 2.091541 AGCGTTGAGAAGAGAGAGAGG 58.908 52.381 0.00 0.00 0.00 3.69
685 1789 3.009723 AGAGCGTTGAGAAGAGAGAGAG 58.990 50.000 0.00 0.00 0.00 3.20
686 1790 2.746904 CAGAGCGTTGAGAAGAGAGAGA 59.253 50.000 0.00 0.00 0.00 3.10
687 1791 2.731968 GCAGAGCGTTGAGAAGAGAGAG 60.732 54.545 0.00 0.00 0.00 3.20
688 1792 1.201181 GCAGAGCGTTGAGAAGAGAGA 59.799 52.381 0.00 0.00 0.00 3.10
689 1793 1.627879 GCAGAGCGTTGAGAAGAGAG 58.372 55.000 0.00 0.00 0.00 3.20
690 1794 0.244994 GGCAGAGCGTTGAGAAGAGA 59.755 55.000 0.00 0.00 0.00 3.10
691 1795 0.739112 GGGCAGAGCGTTGAGAAGAG 60.739 60.000 0.00 0.00 0.00 2.85
692 1796 1.293498 GGGCAGAGCGTTGAGAAGA 59.707 57.895 0.00 0.00 0.00 2.87
693 1797 1.743252 GGGGCAGAGCGTTGAGAAG 60.743 63.158 0.00 0.00 0.00 2.85
694 1798 2.050836 TTGGGGCAGAGCGTTGAGAA 62.051 55.000 0.00 0.00 0.00 2.87
695 1799 1.841302 ATTGGGGCAGAGCGTTGAGA 61.841 55.000 0.00 0.00 0.00 3.27
696 1800 1.372087 GATTGGGGCAGAGCGTTGAG 61.372 60.000 0.00 0.00 0.00 3.02
697 1801 1.377202 GATTGGGGCAGAGCGTTGA 60.377 57.895 0.00 0.00 0.00 3.18
698 1802 2.409870 GGATTGGGGCAGAGCGTTG 61.410 63.158 0.00 0.00 0.00 4.10
699 1803 2.044946 GGATTGGGGCAGAGCGTT 60.045 61.111 0.00 0.00 0.00 4.84
700 1804 4.115199 GGGATTGGGGCAGAGCGT 62.115 66.667 0.00 0.00 0.00 5.07
701 1805 4.883354 GGGGATTGGGGCAGAGCG 62.883 72.222 0.00 0.00 0.00 5.03
702 1806 4.529731 GGGGGATTGGGGCAGAGC 62.530 72.222 0.00 0.00 0.00 4.09
703 1807 3.023116 TGGGGGATTGGGGCAGAG 61.023 66.667 0.00 0.00 0.00 3.35
704 1808 3.346734 GTGGGGGATTGGGGCAGA 61.347 66.667 0.00 0.00 0.00 4.26
705 1809 4.463788 GGTGGGGGATTGGGGCAG 62.464 72.222 0.00 0.00 0.00 4.85
743 1847 4.918201 GAGGCGAGATTGGGGGCG 62.918 72.222 0.00 0.00 0.00 6.13
744 1848 4.570874 GGAGGCGAGATTGGGGGC 62.571 72.222 0.00 0.00 0.00 5.80
745 1849 3.878667 GGGAGGCGAGATTGGGGG 61.879 72.222 0.00 0.00 0.00 5.40
871 2098 4.039357 CGACGGACGTGGAGCTGT 62.039 66.667 0.53 0.00 37.22 4.40
1176 2414 2.283388 ACGGGCACGGAGGAGTTA 60.283 61.111 15.46 0.00 46.48 2.24
1242 2480 1.968493 TGGAACGCAGAGGAGTAGTTT 59.032 47.619 0.00 0.00 0.00 2.66
1272 2510 4.516195 GGCGCGGAGGAGAAGGAC 62.516 72.222 8.83 0.00 0.00 3.85
1497 2735 2.985847 GCCGGCTGGTGCTTTTCT 60.986 61.111 22.15 0.00 39.59 2.52
1767 3005 1.836802 TCATTGTCATCGTCATCCCCA 59.163 47.619 0.00 0.00 0.00 4.96
1770 3008 4.631377 TCAAGTTCATTGTCATCGTCATCC 59.369 41.667 0.00 0.00 40.05 3.51
1791 3029 0.536460 GGCCGGAACCTGAAAAGTCA 60.536 55.000 5.05 0.00 0.00 3.41
1929 3167 0.835276 CATGATCCCTCACTGCTGGA 59.165 55.000 0.00 0.00 33.22 3.86
2013 3251 1.059913 GGGATCCCATCGATTGGTCT 58.940 55.000 26.95 4.51 44.83 3.85
2437 3698 4.271049 GCATTTAGAGACGCAAGCAGATTA 59.729 41.667 0.00 0.00 45.62 1.75
2446 3707 4.475028 CACATTTTGCATTTAGAGACGCA 58.525 39.130 0.00 0.00 0.00 5.24
2527 3788 4.887071 TGAAATATGAATGGAAACCCGGAG 59.113 41.667 0.73 0.00 0.00 4.63
2685 3948 1.968493 GGGTGTGACTCTGACCAACTA 59.032 52.381 0.00 0.00 0.00 2.24
2762 4025 9.125906 CTGCTTTCATTGACAAATTTAGAAGAG 57.874 33.333 0.00 0.00 0.00 2.85
2833 4096 7.702348 GGACTTCCTGCATATCAAAACAAATAC 59.298 37.037 0.00 0.00 0.00 1.89
2842 4105 3.135348 CCTCTGGACTTCCTGCATATCAA 59.865 47.826 0.00 0.00 36.82 2.57
2858 4121 1.338105 TGCTCACGTTTGATCCTCTGG 60.338 52.381 0.00 0.00 0.00 3.86
2976 4239 0.820482 AACACCCAACCAAGCCGTAC 60.820 55.000 0.00 0.00 0.00 3.67
3037 4300 5.807011 CCAACAAAATAAACTGCTATCAGGC 59.193 40.000 0.00 0.00 44.54 4.85
3038 4301 5.807011 GCCAACAAAATAAACTGCTATCAGG 59.193 40.000 0.00 0.00 44.54 3.86
3040 4303 6.588719 AGCCAACAAAATAAACTGCTATCA 57.411 33.333 0.00 0.00 0.00 2.15
3041 4304 8.980143 TTTAGCCAACAAAATAAACTGCTATC 57.020 30.769 0.00 0.00 30.94 2.08
3042 4305 9.771534 TTTTTAGCCAACAAAATAAACTGCTAT 57.228 25.926 0.00 0.00 30.94 2.97
3077 4340 6.595326 CACAATTACCTGCTTGAGATACTCAA 59.405 38.462 12.53 12.53 46.50 3.02
3078 4341 6.108687 CACAATTACCTGCTTGAGATACTCA 58.891 40.000 0.00 0.00 38.87 3.41
3079 4342 5.525378 CCACAATTACCTGCTTGAGATACTC 59.475 44.000 0.00 0.00 0.00 2.59
3080 4343 5.045578 ACCACAATTACCTGCTTGAGATACT 60.046 40.000 0.00 0.00 0.00 2.12
3081 4344 5.186198 ACCACAATTACCTGCTTGAGATAC 58.814 41.667 0.00 0.00 0.00 2.24
3082 4345 5.435686 ACCACAATTACCTGCTTGAGATA 57.564 39.130 0.00 0.00 0.00 1.98
3083 4346 4.307032 ACCACAATTACCTGCTTGAGAT 57.693 40.909 0.00 0.00 0.00 2.75
3084 4347 3.788227 ACCACAATTACCTGCTTGAGA 57.212 42.857 0.00 0.00 0.00 3.27
3085 4348 4.336433 CCATACCACAATTACCTGCTTGAG 59.664 45.833 0.00 0.00 0.00 3.02
3086 4349 4.269183 CCATACCACAATTACCTGCTTGA 58.731 43.478 0.00 0.00 0.00 3.02
3087 4350 3.181487 GCCATACCACAATTACCTGCTTG 60.181 47.826 0.00 0.00 0.00 4.01
3088 4351 3.023832 GCCATACCACAATTACCTGCTT 58.976 45.455 0.00 0.00 0.00 3.91
3089 4352 2.242196 AGCCATACCACAATTACCTGCT 59.758 45.455 0.00 0.00 0.00 4.24
3090 4353 2.654863 AGCCATACCACAATTACCTGC 58.345 47.619 0.00 0.00 0.00 4.85
3091 4354 3.381272 CCAAGCCATACCACAATTACCTG 59.619 47.826 0.00 0.00 0.00 4.00
3092 4355 3.011257 ACCAAGCCATACCACAATTACCT 59.989 43.478 0.00 0.00 0.00 3.08
3093 4356 3.361786 ACCAAGCCATACCACAATTACC 58.638 45.455 0.00 0.00 0.00 2.85
3094 4357 4.381505 CCAACCAAGCCATACCACAATTAC 60.382 45.833 0.00 0.00 0.00 1.89
3095 4358 3.766591 CCAACCAAGCCATACCACAATTA 59.233 43.478 0.00 0.00 0.00 1.40
3096 4359 2.566724 CCAACCAAGCCATACCACAATT 59.433 45.455 0.00 0.00 0.00 2.32
3097 4360 2.178580 CCAACCAAGCCATACCACAAT 58.821 47.619 0.00 0.00 0.00 2.71
3098 4361 1.626686 CCAACCAAGCCATACCACAA 58.373 50.000 0.00 0.00 0.00 3.33
3099 4362 0.251564 CCCAACCAAGCCATACCACA 60.252 55.000 0.00 0.00 0.00 4.17
3100 4363 0.251608 ACCCAACCAAGCCATACCAC 60.252 55.000 0.00 0.00 0.00 4.16
3101 4364 0.251564 CACCCAACCAAGCCATACCA 60.252 55.000 0.00 0.00 0.00 3.25
3102 4365 0.251608 ACACCCAACCAAGCCATACC 60.252 55.000 0.00 0.00 0.00 2.73
3103 4366 1.627864 AACACCCAACCAAGCCATAC 58.372 50.000 0.00 0.00 0.00 2.39
3104 4367 2.390225 AAACACCCAACCAAGCCATA 57.610 45.000 0.00 0.00 0.00 2.74
3105 4368 1.967779 GTAAACACCCAACCAAGCCAT 59.032 47.619 0.00 0.00 0.00 4.40
3106 4369 1.063567 AGTAAACACCCAACCAAGCCA 60.064 47.619 0.00 0.00 0.00 4.75
3107 4370 1.699730 AGTAAACACCCAACCAAGCC 58.300 50.000 0.00 0.00 0.00 4.35
3108 4371 4.139038 TCTTAGTAAACACCCAACCAAGC 58.861 43.478 0.00 0.00 0.00 4.01
3109 4372 6.238648 AGATCTTAGTAAACACCCAACCAAG 58.761 40.000 0.00 0.00 0.00 3.61
3110 4373 6.195600 AGATCTTAGTAAACACCCAACCAA 57.804 37.500 0.00 0.00 0.00 3.67
3111 4374 5.836024 AGATCTTAGTAAACACCCAACCA 57.164 39.130 0.00 0.00 0.00 3.67
3112 4375 8.509690 GTTAAAGATCTTAGTAAACACCCAACC 58.490 37.037 8.75 0.00 0.00 3.77
3113 4376 8.509690 GGTTAAAGATCTTAGTAAACACCCAAC 58.490 37.037 8.75 0.00 0.00 3.77
3114 4377 7.666804 GGGTTAAAGATCTTAGTAAACACCCAA 59.333 37.037 8.75 0.00 0.00 4.12
3115 4378 7.017850 AGGGTTAAAGATCTTAGTAAACACCCA 59.982 37.037 22.71 0.00 32.94 4.51
3116 4379 7.400439 AGGGTTAAAGATCTTAGTAAACACCC 58.600 38.462 8.75 14.74 0.00 4.61
3117 4380 9.376075 GTAGGGTTAAAGATCTTAGTAAACACC 57.624 37.037 8.75 12.75 0.00 4.16
3122 4385 9.986157 TGAGAGTAGGGTTAAAGATCTTAGTAA 57.014 33.333 8.75 1.85 0.00 2.24
3127 4390 9.495382 AACTATGAGAGTAGGGTTAAAGATCTT 57.505 33.333 0.88 0.88 37.44 2.40
3128 4391 9.138596 GAACTATGAGAGTAGGGTTAAAGATCT 57.861 37.037 0.00 0.00 37.44 2.75
3129 4392 8.915036 TGAACTATGAGAGTAGGGTTAAAGATC 58.085 37.037 0.00 0.00 37.44 2.75
3130 4393 8.840200 TGAACTATGAGAGTAGGGTTAAAGAT 57.160 34.615 0.00 0.00 37.44 2.40
3131 4394 8.840200 ATGAACTATGAGAGTAGGGTTAAAGA 57.160 34.615 0.00 0.00 37.44 2.52
3132 4395 9.892130 AAATGAACTATGAGAGTAGGGTTAAAG 57.108 33.333 0.00 0.00 37.44 1.85
3505 4851 3.834813 TCTCAACATGCAGAACTACCTCT 59.165 43.478 0.00 0.00 0.00 3.69
3676 5023 9.072375 TGATTACAACAAGAAATGGTCACATAA 57.928 29.630 0.00 0.00 35.94 1.90
3689 5036 5.585500 GTGTAACGCTGATTACAACAAGA 57.415 39.130 6.64 0.00 44.53 3.02
3748 5095 2.612604 CATGGCCATGTCATTTGTGTG 58.387 47.619 33.68 8.86 34.23 3.82
3824 5187 2.028748 AGGAATTTTGACTGCCATGTGC 60.029 45.455 0.00 0.00 41.77 4.57
3825 5188 3.947910 AGGAATTTTGACTGCCATGTG 57.052 42.857 0.00 0.00 0.00 3.21
3826 5189 3.445096 GCTAGGAATTTTGACTGCCATGT 59.555 43.478 0.00 0.00 0.00 3.21
3827 5190 3.698040 AGCTAGGAATTTTGACTGCCATG 59.302 43.478 0.00 0.00 0.00 3.66
3828 5191 3.973425 AGCTAGGAATTTTGACTGCCAT 58.027 40.909 0.00 0.00 0.00 4.40
3829 5192 3.439857 AGCTAGGAATTTTGACTGCCA 57.560 42.857 0.00 0.00 0.00 4.92
3830 5193 3.879892 CCTAGCTAGGAATTTTGACTGCC 59.120 47.826 32.79 0.00 46.63 4.85
3857 5220 7.175641 CCCTTCACAGAGACAATCTAAATTTGT 59.824 37.037 0.00 0.00 39.91 2.83
3892 5255 6.389906 ACGGTTGGAAGAAAATGATCAAATC 58.610 36.000 0.00 0.00 0.00 2.17
3897 5260 5.066505 AGCATACGGTTGGAAGAAAATGATC 59.933 40.000 0.00 0.00 0.00 2.92
3974 5337 7.042321 GCTTAGGTGTATAACGTAATGCATCAA 60.042 37.037 0.00 0.00 38.20 2.57
3975 5338 6.422701 GCTTAGGTGTATAACGTAATGCATCA 59.577 38.462 0.00 0.00 38.20 3.07
3988 5351 6.368779 AACTCAAACCAGCTTAGGTGTATA 57.631 37.500 10.62 0.00 42.25 1.47
3994 5357 6.879400 AGATACTAACTCAAACCAGCTTAGG 58.121 40.000 0.00 0.00 0.00 2.69
4054 5417 4.100035 ACCTGGAAAGCCAAAGAAGAAAAG 59.900 41.667 0.00 0.00 45.41 2.27
4055 5418 4.030216 ACCTGGAAAGCCAAAGAAGAAAA 58.970 39.130 0.00 0.00 45.41 2.29
4209 5572 1.539388 GTTGATGCCGACATTGTTCCA 59.461 47.619 0.00 0.00 36.35 3.53
4221 5584 2.462889 CGCACCATAAATGTTGATGCC 58.537 47.619 0.00 0.00 0.00 4.40
4352 5716 5.127845 TCTCCGATCAGAGAATACAGCTTTT 59.872 40.000 6.16 0.00 39.94 2.27
4367 5731 1.689243 CCAGCCATGGTCTCCGATCA 61.689 60.000 14.67 0.00 42.17 2.92
4406 5770 1.080569 CTCATGGGCCGTGTTTTGC 60.081 57.895 24.48 0.00 0.00 3.68
4415 5779 2.945668 GTGTTAATCTGACTCATGGGCC 59.054 50.000 0.00 0.00 0.00 5.80
4532 5899 3.253432 GGGAAAATTGTCACAGGTGAGTC 59.747 47.826 1.66 0.00 40.75 3.36
4537 5904 1.219213 TGGGGGAAAATTGTCACAGGT 59.781 47.619 0.00 0.00 0.00 4.00
4596 5966 2.927856 TTCCGCTCCCAGCAAGGA 60.928 61.111 0.00 0.00 42.58 3.36
4609 5979 1.901085 CCCCAGAGGTCTTCTTCCG 59.099 63.158 0.00 0.00 32.41 4.30
4612 5982 1.204113 CCTGCCCCAGAGGTCTTCTT 61.204 60.000 0.00 0.00 38.26 2.52
4615 5985 3.334054 GCCTGCCCCAGAGGTCTT 61.334 66.667 0.00 0.00 38.26 3.01
4627 5997 1.344114 TGACCCAGAAAAATTGCCTGC 59.656 47.619 0.00 0.00 0.00 4.85
4678 6048 4.991056 TCTTTCTGATGAAGAACAGTTCGG 59.009 41.667 7.68 0.00 44.77 4.30
4693 6063 5.241506 AGCGAATGGTCATTTTTCTTTCTGA 59.758 36.000 0.00 0.00 0.00 3.27
4694 6064 5.464168 AGCGAATGGTCATTTTTCTTTCTG 58.536 37.500 0.00 0.00 0.00 3.02
4695 6065 5.335976 GGAGCGAATGGTCATTTTTCTTTCT 60.336 40.000 0.00 0.00 44.47 2.52
4756 6126 2.906354 CGGAATAGGAGTTCCCAACTG 58.094 52.381 0.00 0.00 43.86 3.16
4757 6127 1.209747 GCGGAATAGGAGTTCCCAACT 59.790 52.381 0.44 0.00 43.86 3.16
4763 6133 2.586773 GCGCGCGGAATAGGAGTTC 61.587 63.158 33.06 5.84 0.00 3.01
4766 6136 0.666274 TATTGCGCGCGGAATAGGAG 60.666 55.000 40.65 10.53 37.37 3.69
4825 6195 1.524621 GTCCAGGCCCATGATGACG 60.525 63.158 0.00 0.00 0.00 4.35
4832 6202 1.693640 CTTCTTGGTCCAGGCCCAT 59.306 57.895 0.00 0.00 0.00 4.00
4878 6248 2.616256 CGTACCCAACCCCTAAGTTTCC 60.616 54.545 0.00 0.00 0.00 3.13
4883 6253 0.911045 ACCCGTACCCAACCCCTAAG 60.911 60.000 0.00 0.00 0.00 2.18
4885 6255 1.613035 CACCCGTACCCAACCCCTA 60.613 63.158 0.00 0.00 0.00 3.53
4886 6256 2.931649 CACCCGTACCCAACCCCT 60.932 66.667 0.00 0.00 0.00 4.79
4887 6257 4.728110 GCACCCGTACCCAACCCC 62.728 72.222 0.00 0.00 0.00 4.95
4925 6295 1.611261 CGTCCTCCCCACTAACCCA 60.611 63.158 0.00 0.00 0.00 4.51
4927 6297 2.582978 GCGTCCTCCCCACTAACC 59.417 66.667 0.00 0.00 0.00 2.85
4929 6299 3.072468 CCGCGTCCTCCCCACTAA 61.072 66.667 4.92 0.00 0.00 2.24
4930 6300 4.371417 ACCGCGTCCTCCCCACTA 62.371 66.667 4.92 0.00 0.00 2.74
4946 6316 4.767255 CTCTGCCCTCACCGCCAC 62.767 72.222 0.00 0.00 0.00 5.01
4991 6361 3.462678 GAGACCTCACCGCCCTCC 61.463 72.222 0.00 0.00 0.00 4.30
5002 6372 3.527507 TGTACACAGAGGAAGAGACCT 57.472 47.619 0.00 0.00 43.64 3.85
5005 6375 4.019858 CAGGATGTACACAGAGGAAGAGA 58.980 47.826 0.00 0.00 0.00 3.10
5007 6377 2.497675 GCAGGATGTACACAGAGGAAGA 59.502 50.000 0.00 0.00 39.31 2.87
5008 6378 2.736719 CGCAGGATGTACACAGAGGAAG 60.737 54.545 0.00 0.00 39.31 3.46
5010 6380 0.817654 CGCAGGATGTACACAGAGGA 59.182 55.000 0.00 0.00 39.31 3.71
5013 6383 0.246360 CCACGCAGGATGTACACAGA 59.754 55.000 0.00 0.00 41.22 3.41
5015 6385 1.375396 GCCACGCAGGATGTACACA 60.375 57.895 0.00 0.00 41.22 3.72
5016 6386 2.452813 CGCCACGCAGGATGTACAC 61.453 63.158 0.00 0.00 41.22 2.90
5017 6387 1.955495 ATCGCCACGCAGGATGTACA 61.955 55.000 0.00 0.00 41.22 2.90
5019 6389 0.747852 TTATCGCCACGCAGGATGTA 59.252 50.000 0.00 0.00 41.22 2.29
5021 6391 1.069703 CATTTATCGCCACGCAGGATG 60.070 52.381 0.00 0.00 41.22 3.51
5086 7035 1.718757 AAGCATCGGCCGAATCTTGC 61.719 55.000 33.64 33.64 42.56 4.01
5105 7054 0.667993 CTTCGAAGCAGGCCAAACAA 59.332 50.000 13.09 0.00 0.00 2.83
5108 7057 0.179032 TGTCTTCGAAGCAGGCCAAA 60.179 50.000 20.56 0.00 0.00 3.28
5137 7086 4.524053 ACCTAGTGATTTCGGGATTTTCC 58.476 43.478 0.00 0.00 35.23 3.13
5138 7087 5.676331 GCAACCTAGTGATTTCGGGATTTTC 60.676 44.000 0.00 0.00 0.00 2.29
5139 7088 4.157840 GCAACCTAGTGATTTCGGGATTTT 59.842 41.667 0.00 0.00 0.00 1.82
5140 7089 3.694566 GCAACCTAGTGATTTCGGGATTT 59.305 43.478 0.00 0.00 0.00 2.17
5141 7090 3.279434 GCAACCTAGTGATTTCGGGATT 58.721 45.455 0.00 0.00 0.00 3.01
5142 7091 2.421529 GGCAACCTAGTGATTTCGGGAT 60.422 50.000 0.00 0.00 0.00 3.85
5143 7092 1.065709 GGCAACCTAGTGATTTCGGGA 60.066 52.381 0.00 0.00 0.00 5.14
5144 7093 1.379527 GGCAACCTAGTGATTTCGGG 58.620 55.000 0.00 0.00 0.00 5.14
5145 7094 1.006832 CGGCAACCTAGTGATTTCGG 58.993 55.000 0.00 0.00 0.00 4.30
5146 7095 0.373716 GCGGCAACCTAGTGATTTCG 59.626 55.000 0.00 0.00 0.00 3.46
5147 7096 1.448985 TGCGGCAACCTAGTGATTTC 58.551 50.000 0.00 0.00 0.00 2.17
5148 7097 1.812571 CTTGCGGCAACCTAGTGATTT 59.187 47.619 12.11 0.00 0.00 2.17
5149 7098 1.271379 ACTTGCGGCAACCTAGTGATT 60.271 47.619 12.11 0.00 0.00 2.57
5150 7099 0.324943 ACTTGCGGCAACCTAGTGAT 59.675 50.000 12.11 0.00 0.00 3.06
5151 7100 0.602638 CACTTGCGGCAACCTAGTGA 60.603 55.000 21.98 0.00 40.34 3.41
5152 7101 1.577328 CCACTTGCGGCAACCTAGTG 61.577 60.000 20.34 20.34 38.92 2.74
5153 7102 1.302511 CCACTTGCGGCAACCTAGT 60.303 57.895 12.11 5.18 0.00 2.57
5154 7103 3.578456 CCACTTGCGGCAACCTAG 58.422 61.111 12.11 4.46 0.00 3.02
5173 7122 4.471726 GTGGAGCACATGCAGCGC 62.472 66.667 0.00 0.00 45.16 5.92
5174 7123 2.330372 AAGTGGAGCACATGCAGCG 61.330 57.895 6.64 0.00 45.16 5.18
5175 7124 1.211969 CAAGTGGAGCACATGCAGC 59.788 57.895 6.64 2.68 45.16 5.25
5176 7125 0.520404 GACAAGTGGAGCACATGCAG 59.480 55.000 6.64 0.00 45.16 4.41
5177 7126 0.179023 TGACAAGTGGAGCACATGCA 60.179 50.000 6.64 0.00 45.16 3.96
5178 7127 0.239347 GTGACAAGTGGAGCACATGC 59.761 55.000 0.00 0.00 36.67 4.06
5179 7128 1.596603 TGTGACAAGTGGAGCACATG 58.403 50.000 0.00 0.00 38.74 3.21
5180 7129 1.949525 GTTGTGACAAGTGGAGCACAT 59.050 47.619 0.00 0.00 40.51 3.21
5181 7130 1.378531 GTTGTGACAAGTGGAGCACA 58.621 50.000 0.00 0.00 39.27 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.