Multiple sequence alignment - TraesCS6B01G289900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G289900 chr6B 100.000 4266 0 0 1 4266 521512740 521517005 0.000000e+00 7878
1 TraesCS6B01G289900 chr6A 96.513 1950 49 7 1568 3506 486005741 486007682 0.000000e+00 3206
2 TraesCS6B01G289900 chr6A 88.548 1109 70 19 483 1538 486004641 486005745 0.000000e+00 1291
3 TraesCS6B01G289900 chr6A 95.132 760 31 3 3507 4266 486007712 486008465 0.000000e+00 1194
4 TraesCS6B01G289900 chr6A 82.464 211 17 6 1 200 394638285 394638486 2.640000e-37 167
5 TraesCS6B01G289900 chr6A 81.347 193 23 8 13 193 145658760 145658569 1.240000e-30 145
6 TraesCS6B01G289900 chr6D 97.806 1641 27 3 1871 3506 345389896 345391532 0.000000e+00 2822
7 TraesCS6B01G289900 chr6D 88.294 1307 97 27 215 1493 345388596 345389874 0.000000e+00 1515
8 TraesCS6B01G289900 chr6D 91.603 786 39 3 3507 4266 345391562 345392346 0.000000e+00 1061
9 TraesCS6B01G289900 chr3D 91.244 217 13 1 2168 2384 32190912 32190702 1.500000e-74 291
10 TraesCS6B01G289900 chr7B 86.175 217 24 1 2168 2384 603666891 603666681 3.320000e-56 230
11 TraesCS6B01G289900 chr7D 86.385 213 16 5 1 200 98997857 98997645 2.000000e-53 220
12 TraesCS6B01G289900 chr7D 81.905 210 25 7 303 500 569501659 569501451 9.490000e-37 165
13 TraesCS6B01G289900 chr4A 86.190 210 17 6 1 200 733630370 733630577 2.580000e-52 217
14 TraesCS6B01G289900 chr4A 85.981 214 15 6 1 200 620474679 620474891 9.290000e-52 215
15 TraesCS6B01G289900 chr4A 83.412 211 15 8 1 200 574771621 574771420 1.220000e-40 178
16 TraesCS6B01G289900 chr3A 83.886 211 14 8 1 200 224963184 224963385 2.620000e-42 183
17 TraesCS6B01G289900 chr2D 81.900 221 19 8 1 200 119841107 119841327 2.640000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G289900 chr6B 521512740 521517005 4265 False 7878.000000 7878 100.000000 1 4266 1 chr6B.!!$F1 4265
1 TraesCS6B01G289900 chr6A 486004641 486008465 3824 False 1897.000000 3206 93.397667 483 4266 3 chr6A.!!$F2 3783
2 TraesCS6B01G289900 chr6D 345388596 345392346 3750 False 1799.333333 2822 92.567667 215 4266 3 chr6D.!!$F1 4051


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 309 0.253044 ATTGGCTTCAAGCTCCGCTA 59.747 50.0 9.83 0.0 41.99 4.26 F
1503 1600 0.108329 ATGCTGGCAGTACGGTGTAC 60.108 55.0 17.16 0.0 0.00 2.90 F
1968 2071 0.036671 CCTGTCGGTACCACTTTCCC 60.037 60.0 13.54 0.0 0.00 3.97 F
2047 2150 0.676782 AAAGCGCTCCGGTTAAGCAT 60.677 50.0 12.06 0.0 46.74 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 1786 0.322546 TCCTACTCACTCAGCAGCGA 60.323 55.000 0.0 0.0 0.0 4.93 R
2887 2990 1.271271 GGAATGATGGGCAGAGCTAGG 60.271 57.143 0.0 0.0 0.0 3.02 R
2896 2999 1.469767 GCGAAAACAGGAATGATGGGC 60.470 52.381 0.0 0.0 0.0 5.36 R
3338 3441 3.458118 ACCAACTAGCCCATTATGCAGTA 59.542 43.478 0.0 0.0 0.0 2.74 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.261522 AGGAGAGAATAGAGTTTGAAATACACC 58.738 37.037 0.00 0.00 0.00 4.16
31 32 8.261522 GGAGAGAATAGAGTTTGAAATACACCT 58.738 37.037 0.00 0.00 0.00 4.00
32 33 9.308318 GAGAGAATAGAGTTTGAAATACACCTC 57.692 37.037 0.00 0.00 0.00 3.85
33 34 8.816894 AGAGAATAGAGTTTGAAATACACCTCA 58.183 33.333 0.00 0.00 32.45 3.86
34 35 9.606631 GAGAATAGAGTTTGAAATACACCTCAT 57.393 33.333 0.00 0.00 32.45 2.90
39 40 8.553459 AGAGTTTGAAATACACCTCATAACTG 57.447 34.615 0.00 0.00 32.45 3.16
40 41 8.375506 AGAGTTTGAAATACACCTCATAACTGA 58.624 33.333 0.00 0.00 32.45 3.41
41 42 8.918202 AGTTTGAAATACACCTCATAACTGAA 57.082 30.769 0.00 0.00 29.63 3.02
42 43 9.349713 AGTTTGAAATACACCTCATAACTGAAA 57.650 29.630 0.00 0.00 29.63 2.69
43 44 9.612620 GTTTGAAATACACCTCATAACTGAAAG 57.387 33.333 0.00 0.00 42.29 2.62
44 45 9.567776 TTTGAAATACACCTCATAACTGAAAGA 57.432 29.630 0.00 0.00 37.43 2.52
45 46 8.547967 TGAAATACACCTCATAACTGAAAGAC 57.452 34.615 0.00 0.00 37.43 3.01
46 47 8.154203 TGAAATACACCTCATAACTGAAAGACA 58.846 33.333 0.00 0.00 37.43 3.41
47 48 8.918202 AAATACACCTCATAACTGAAAGACAA 57.082 30.769 0.00 0.00 37.43 3.18
48 49 8.918202 AATACACCTCATAACTGAAAGACAAA 57.082 30.769 0.00 0.00 37.43 2.83
49 50 8.918202 ATACACCTCATAACTGAAAGACAAAA 57.082 30.769 0.00 0.00 37.43 2.44
50 51 7.264373 ACACCTCATAACTGAAAGACAAAAG 57.736 36.000 0.00 0.00 37.43 2.27
51 52 7.054124 ACACCTCATAACTGAAAGACAAAAGA 58.946 34.615 0.00 0.00 37.43 2.52
52 53 7.227512 ACACCTCATAACTGAAAGACAAAAGAG 59.772 37.037 0.00 0.00 37.43 2.85
53 54 7.227512 CACCTCATAACTGAAAGACAAAAGAGT 59.772 37.037 0.00 0.00 37.43 3.24
54 55 7.227512 ACCTCATAACTGAAAGACAAAAGAGTG 59.772 37.037 0.00 0.00 37.43 3.51
55 56 7.227512 CCTCATAACTGAAAGACAAAAGAGTGT 59.772 37.037 0.00 0.00 37.43 3.55
56 57 8.506168 TCATAACTGAAAGACAAAAGAGTGTT 57.494 30.769 0.00 0.00 37.43 3.32
57 58 9.607988 TCATAACTGAAAGACAAAAGAGTGTTA 57.392 29.630 0.00 0.00 37.43 2.41
58 59 9.651718 CATAACTGAAAGACAAAAGAGTGTTAC 57.348 33.333 0.00 0.00 37.43 2.50
59 60 7.923414 AACTGAAAGACAAAAGAGTGTTACT 57.077 32.000 0.00 0.00 37.43 2.24
60 61 7.541122 ACTGAAAGACAAAAGAGTGTTACTC 57.459 36.000 0.79 0.79 40.94 2.59
62 63 7.492994 ACTGAAAGACAAAAGAGTGTTACTCTC 59.507 37.037 11.52 6.34 46.53 3.20
63 64 7.042389 CTGAAAGACAAAAGAGTGTTACTCTCC 60.042 40.741 11.52 1.17 46.70 3.71
73 74 5.837437 GAGTGTTACTCTCCCAGTATGATG 58.163 45.833 3.30 0.00 41.88 3.07
74 75 5.273208 AGTGTTACTCTCCCAGTATGATGT 58.727 41.667 0.00 0.00 39.69 3.06
75 76 5.721960 AGTGTTACTCTCCCAGTATGATGTT 59.278 40.000 0.00 0.00 39.69 2.71
76 77 5.812642 GTGTTACTCTCCCAGTATGATGTTG 59.187 44.000 0.00 0.00 39.69 3.33
77 78 3.550437 ACTCTCCCAGTATGATGTTGC 57.450 47.619 0.00 0.00 39.69 4.17
78 79 2.171448 ACTCTCCCAGTATGATGTTGCC 59.829 50.000 0.00 0.00 39.69 4.52
79 80 1.490490 TCTCCCAGTATGATGTTGCCC 59.510 52.381 0.00 0.00 39.69 5.36
80 81 1.212688 CTCCCAGTATGATGTTGCCCA 59.787 52.381 0.00 0.00 39.69 5.36
81 82 1.638070 TCCCAGTATGATGTTGCCCAA 59.362 47.619 0.00 0.00 39.69 4.12
82 83 2.244510 TCCCAGTATGATGTTGCCCAAT 59.755 45.455 0.00 0.00 39.69 3.16
83 84 3.033184 CCCAGTATGATGTTGCCCAATT 58.967 45.455 0.00 0.00 39.69 2.32
84 85 3.451902 CCCAGTATGATGTTGCCCAATTT 59.548 43.478 0.00 0.00 39.69 1.82
85 86 4.441913 CCCAGTATGATGTTGCCCAATTTC 60.442 45.833 0.00 0.00 39.69 2.17
86 87 4.403432 CCAGTATGATGTTGCCCAATTTCT 59.597 41.667 0.00 0.00 39.69 2.52
87 88 5.105228 CCAGTATGATGTTGCCCAATTTCTT 60.105 40.000 0.00 0.00 39.69 2.52
88 89 6.038356 CAGTATGATGTTGCCCAATTTCTTC 58.962 40.000 0.00 0.00 39.69 2.87
89 90 3.574284 TGATGTTGCCCAATTTCTTCG 57.426 42.857 0.00 0.00 0.00 3.79
90 91 2.262211 GATGTTGCCCAATTTCTTCGC 58.738 47.619 0.00 0.00 0.00 4.70
91 92 0.316841 TGTTGCCCAATTTCTTCGCC 59.683 50.000 0.00 0.00 0.00 5.54
92 93 0.389817 GTTGCCCAATTTCTTCGCCC 60.390 55.000 0.00 0.00 0.00 6.13
93 94 1.540435 TTGCCCAATTTCTTCGCCCC 61.540 55.000 0.00 0.00 0.00 5.80
94 95 2.721167 GCCCAATTTCTTCGCCCCC 61.721 63.158 0.00 0.00 0.00 5.40
95 96 1.304879 CCCAATTTCTTCGCCCCCA 60.305 57.895 0.00 0.00 0.00 4.96
96 97 0.902516 CCCAATTTCTTCGCCCCCAA 60.903 55.000 0.00 0.00 0.00 4.12
97 98 0.972883 CCAATTTCTTCGCCCCCAAA 59.027 50.000 0.00 0.00 0.00 3.28
98 99 1.346068 CCAATTTCTTCGCCCCCAAAA 59.654 47.619 0.00 0.00 0.00 2.44
99 100 2.612721 CCAATTTCTTCGCCCCCAAAAG 60.613 50.000 0.00 0.00 0.00 2.27
100 101 2.298729 CAATTTCTTCGCCCCCAAAAGA 59.701 45.455 0.00 0.00 0.00 2.52
101 102 2.302587 TTTCTTCGCCCCCAAAAGAT 57.697 45.000 0.00 0.00 0.00 2.40
102 103 1.544724 TTCTTCGCCCCCAAAAGATG 58.455 50.000 0.00 0.00 0.00 2.90
115 116 5.772825 CCAAAAGATGGTTTCACTCTTGA 57.227 39.130 0.00 0.00 44.85 3.02
116 117 6.336842 CCAAAAGATGGTTTCACTCTTGAT 57.663 37.500 0.00 0.00 44.85 2.57
117 118 6.154445 CCAAAAGATGGTTTCACTCTTGATG 58.846 40.000 0.00 0.00 44.85 3.07
118 119 6.239120 CCAAAAGATGGTTTCACTCTTGATGT 60.239 38.462 0.00 0.00 44.85 3.06
119 120 6.966534 AAAGATGGTTTCACTCTTGATGTT 57.033 33.333 0.00 0.00 29.96 2.71
120 121 5.954296 AGATGGTTTCACTCTTGATGTTG 57.046 39.130 0.00 0.00 0.00 3.33
121 122 5.380043 AGATGGTTTCACTCTTGATGTTGT 58.620 37.500 0.00 0.00 0.00 3.32
122 123 5.829924 AGATGGTTTCACTCTTGATGTTGTT 59.170 36.000 0.00 0.00 0.00 2.83
123 124 5.247507 TGGTTTCACTCTTGATGTTGTTG 57.752 39.130 0.00 0.00 0.00 3.33
124 125 4.946772 TGGTTTCACTCTTGATGTTGTTGA 59.053 37.500 0.00 0.00 0.00 3.18
125 126 5.066375 TGGTTTCACTCTTGATGTTGTTGAG 59.934 40.000 0.00 0.00 0.00 3.02
126 127 4.818534 TTCACTCTTGATGTTGTTGAGC 57.181 40.909 0.00 0.00 0.00 4.26
127 128 3.807553 TCACTCTTGATGTTGTTGAGCA 58.192 40.909 0.00 0.00 0.00 4.26
128 129 4.198530 TCACTCTTGATGTTGTTGAGCAA 58.801 39.130 0.00 0.00 34.16 3.91
129 130 4.639755 TCACTCTTGATGTTGTTGAGCAAA 59.360 37.500 0.00 0.00 39.03 3.68
130 131 5.125257 TCACTCTTGATGTTGTTGAGCAAAA 59.875 36.000 0.00 0.00 39.03 2.44
131 132 5.230726 CACTCTTGATGTTGTTGAGCAAAAC 59.769 40.000 0.00 0.00 39.03 2.43
132 133 4.681744 TCTTGATGTTGTTGAGCAAAACC 58.318 39.130 0.00 0.00 39.03 3.27
133 134 3.077229 TGATGTTGTTGAGCAAAACCG 57.923 42.857 0.00 0.00 39.03 4.44
134 135 2.425312 TGATGTTGTTGAGCAAAACCGT 59.575 40.909 0.00 0.00 39.03 4.83
135 136 3.119316 TGATGTTGTTGAGCAAAACCGTT 60.119 39.130 0.00 0.00 39.03 4.44
136 137 2.600731 TGTTGTTGAGCAAAACCGTTG 58.399 42.857 0.00 0.00 39.03 4.10
137 138 1.923864 GTTGTTGAGCAAAACCGTTGG 59.076 47.619 0.00 0.00 39.03 3.77
138 139 1.464734 TGTTGAGCAAAACCGTTGGA 58.535 45.000 0.00 0.00 0.00 3.53
139 140 1.403679 TGTTGAGCAAAACCGTTGGAG 59.596 47.619 0.00 0.00 0.00 3.86
140 141 1.028905 TTGAGCAAAACCGTTGGAGG 58.971 50.000 0.00 0.00 37.30 4.30
141 142 1.285950 GAGCAAAACCGTTGGAGGC 59.714 57.895 0.00 0.00 33.69 4.70
142 143 1.452145 GAGCAAAACCGTTGGAGGCA 61.452 55.000 0.00 0.00 33.69 4.75
143 144 0.827507 AGCAAAACCGTTGGAGGCAT 60.828 50.000 0.00 0.00 33.69 4.40
144 145 0.667184 GCAAAACCGTTGGAGGCATG 60.667 55.000 0.00 0.00 33.69 4.06
145 146 0.667184 CAAAACCGTTGGAGGCATGC 60.667 55.000 9.90 9.90 33.69 4.06
146 147 0.827507 AAAACCGTTGGAGGCATGCT 60.828 50.000 18.92 3.20 33.69 3.79
147 148 1.244019 AAACCGTTGGAGGCATGCTC 61.244 55.000 18.92 12.66 33.69 4.26
148 149 2.129555 AACCGTTGGAGGCATGCTCT 62.130 55.000 18.92 13.04 33.69 4.09
149 150 1.377725 CCGTTGGAGGCATGCTCTT 60.378 57.895 18.92 3.44 0.00 2.85
150 151 0.962356 CCGTTGGAGGCATGCTCTTT 60.962 55.000 18.92 0.65 0.00 2.52
151 152 0.883833 CGTTGGAGGCATGCTCTTTT 59.116 50.000 18.92 0.00 0.00 2.27
152 153 1.401931 CGTTGGAGGCATGCTCTTTTG 60.402 52.381 18.92 0.00 0.00 2.44
153 154 1.615392 GTTGGAGGCATGCTCTTTTGT 59.385 47.619 18.92 0.00 0.00 2.83
154 155 1.538047 TGGAGGCATGCTCTTTTGTC 58.462 50.000 18.92 0.00 0.00 3.18
155 156 0.449388 GGAGGCATGCTCTTTTGTCG 59.551 55.000 18.92 0.00 0.00 4.35
156 157 1.442769 GAGGCATGCTCTTTTGTCGA 58.557 50.000 18.92 0.00 0.00 4.20
157 158 1.806542 GAGGCATGCTCTTTTGTCGAA 59.193 47.619 18.92 0.00 0.00 3.71
158 159 2.226437 GAGGCATGCTCTTTTGTCGAAA 59.774 45.455 18.92 0.00 0.00 3.46
159 160 2.622942 AGGCATGCTCTTTTGTCGAAAA 59.377 40.909 18.92 0.00 0.00 2.29
160 161 3.068024 AGGCATGCTCTTTTGTCGAAAAA 59.932 39.130 18.92 0.00 30.58 1.94
161 162 3.989817 GGCATGCTCTTTTGTCGAAAAAT 59.010 39.130 18.92 0.00 30.58 1.82
162 163 4.090498 GGCATGCTCTTTTGTCGAAAAATC 59.910 41.667 18.92 0.00 30.58 2.17
163 164 4.090498 GCATGCTCTTTTGTCGAAAAATCC 59.910 41.667 11.37 0.00 30.58 3.01
164 165 3.884169 TGCTCTTTTGTCGAAAAATCCG 58.116 40.909 0.61 0.00 30.58 4.18
165 166 3.234386 GCTCTTTTGTCGAAAAATCCGG 58.766 45.455 0.61 0.00 30.58 5.14
166 167 3.821841 CTCTTTTGTCGAAAAATCCGGG 58.178 45.455 0.00 0.00 30.58 5.73
167 168 2.030628 TCTTTTGTCGAAAAATCCGGGC 60.031 45.455 0.00 0.00 30.58 6.13
168 169 1.319541 TTTGTCGAAAAATCCGGGCA 58.680 45.000 0.00 0.00 0.00 5.36
169 170 1.540267 TTGTCGAAAAATCCGGGCAT 58.460 45.000 0.00 0.00 0.00 4.40
170 171 1.540267 TGTCGAAAAATCCGGGCATT 58.460 45.000 0.00 0.00 0.00 3.56
171 172 1.470890 TGTCGAAAAATCCGGGCATTC 59.529 47.619 0.00 0.74 0.00 2.67
172 173 1.099689 TCGAAAAATCCGGGCATTCC 58.900 50.000 0.00 0.00 0.00 3.01
181 182 3.184206 GGGCATTCCGTTCGTTCC 58.816 61.111 0.00 0.00 0.00 3.62
182 183 1.673009 GGGCATTCCGTTCGTTCCA 60.673 57.895 0.00 0.00 0.00 3.53
183 184 1.238625 GGGCATTCCGTTCGTTCCAA 61.239 55.000 0.00 0.00 0.00 3.53
184 185 0.594110 GGCATTCCGTTCGTTCCAAA 59.406 50.000 0.00 0.00 0.00 3.28
185 186 1.201414 GGCATTCCGTTCGTTCCAAAT 59.799 47.619 0.00 0.00 0.00 2.32
186 187 2.250188 GCATTCCGTTCGTTCCAAATG 58.750 47.619 0.00 0.00 0.00 2.32
187 188 2.862512 CATTCCGTTCGTTCCAAATGG 58.137 47.619 0.00 0.00 34.64 3.16
188 189 1.970092 TTCCGTTCGTTCCAAATGGT 58.030 45.000 0.00 0.00 34.87 3.55
189 190 1.515081 TCCGTTCGTTCCAAATGGTC 58.485 50.000 0.00 0.00 34.87 4.02
190 191 0.519961 CCGTTCGTTCCAAATGGTCC 59.480 55.000 0.00 0.00 36.34 4.46
191 192 1.231221 CGTTCGTTCCAAATGGTCCA 58.769 50.000 0.00 0.00 36.34 4.02
192 193 1.810151 CGTTCGTTCCAAATGGTCCAT 59.190 47.619 0.00 0.00 36.34 3.41
193 194 2.227865 CGTTCGTTCCAAATGGTCCATT 59.772 45.455 11.59 11.59 35.39 3.16
194 195 3.669557 CGTTCGTTCCAAATGGTCCATTC 60.670 47.826 17.60 4.03 32.43 2.67
195 196 3.433306 TCGTTCCAAATGGTCCATTCT 57.567 42.857 17.60 5.63 32.43 2.40
196 197 4.561500 TCGTTCCAAATGGTCCATTCTA 57.438 40.909 17.60 3.72 32.43 2.10
197 198 4.912586 TCGTTCCAAATGGTCCATTCTAA 58.087 39.130 17.60 9.35 32.43 2.10
198 199 5.505780 TCGTTCCAAATGGTCCATTCTAAT 58.494 37.500 17.60 0.00 32.43 1.73
199 200 6.654959 TCGTTCCAAATGGTCCATTCTAATA 58.345 36.000 17.60 0.58 32.43 0.98
200 201 7.287061 TCGTTCCAAATGGTCCATTCTAATAT 58.713 34.615 17.60 0.00 32.43 1.28
201 202 7.777910 TCGTTCCAAATGGTCCATTCTAATATT 59.222 33.333 17.60 0.00 32.43 1.28
202 203 8.413229 CGTTCCAAATGGTCCATTCTAATATTT 58.587 33.333 17.60 0.00 32.43 1.40
244 250 4.758674 CCATCCTAATAGCATGAACACCAG 59.241 45.833 0.00 0.00 0.00 4.00
247 253 2.814805 AATAGCATGAACACCAGCCT 57.185 45.000 0.00 0.00 0.00 4.58
249 255 4.443978 AATAGCATGAACACCAGCCTAT 57.556 40.909 0.00 0.00 0.00 2.57
251 257 3.931907 AGCATGAACACCAGCCTATAA 57.068 42.857 0.00 0.00 0.00 0.98
260 266 6.889722 TGAACACCAGCCTATAAGCTATTTTT 59.110 34.615 0.00 0.00 42.61 1.94
261 267 6.699575 ACACCAGCCTATAAGCTATTTTTG 57.300 37.500 0.00 0.00 42.61 2.44
262 268 6.187682 ACACCAGCCTATAAGCTATTTTTGT 58.812 36.000 0.00 0.00 42.61 2.83
274 280 6.130298 AGCTATTTTTGTTTTGTTTTGGCC 57.870 33.333 0.00 0.00 0.00 5.36
300 306 0.883833 ACAATTGGCTTCAAGCTCCG 59.116 50.000 9.83 0.00 41.99 4.63
301 307 0.457337 CAATTGGCTTCAAGCTCCGC 60.457 55.000 9.83 0.00 41.99 5.54
302 308 0.610232 AATTGGCTTCAAGCTCCGCT 60.610 50.000 9.83 0.00 41.99 5.52
303 309 0.253044 ATTGGCTTCAAGCTCCGCTA 59.747 50.000 9.83 0.00 41.99 4.26
327 333 1.962321 TAGCGCGTCCCTTTATGGCA 61.962 55.000 8.43 0.00 0.00 4.92
331 337 1.219664 CGTCCCTTTATGGCACGGA 59.780 57.895 0.00 0.00 0.00 4.69
332 338 0.810031 CGTCCCTTTATGGCACGGAG 60.810 60.000 0.00 0.00 0.00 4.63
341 347 5.530915 CCTTTATGGCACGGAGATTAATGAA 59.469 40.000 0.00 0.00 0.00 2.57
350 356 7.226720 GGCACGGAGATTAATGAAATTAGAGAA 59.773 37.037 0.00 0.00 40.40 2.87
400 406 7.672983 TCATTAGTCATGAGTTTTGAACCTC 57.327 36.000 8.68 0.00 36.94 3.85
405 411 9.567776 TTAGTCATGAGTTTTGAACCTCAAATA 57.432 29.630 8.68 0.00 44.75 1.40
422 428 6.140303 TCAAATATTGAGGCTTGCAATCTC 57.860 37.500 17.84 17.84 37.22 2.75
423 429 5.653330 TCAAATATTGAGGCTTGCAATCTCA 59.347 36.000 21.41 21.41 37.22 3.27
428 434 2.294233 TGAGGCTTGCAATCTCACAAAC 59.706 45.455 21.41 3.90 33.21 2.93
436 442 3.384146 TGCAATCTCACAAACACATGGTT 59.616 39.130 0.00 0.00 42.98 3.67
472 478 2.640989 GCGACCAACCCGAAAACC 59.359 61.111 0.00 0.00 0.00 3.27
481 487 4.650131 ACCAACCCGAAAACCTTATTTTCA 59.350 37.500 11.50 0.00 38.07 2.69
600 611 1.066573 CGACCAGGACTGCAGAGAATT 60.067 52.381 23.35 0.00 0.00 2.17
603 614 4.681781 CGACCAGGACTGCAGAGAATTTAT 60.682 45.833 23.35 0.00 0.00 1.40
604 615 5.451937 CGACCAGGACTGCAGAGAATTTATA 60.452 44.000 23.35 0.00 0.00 0.98
647 658 3.049674 CCCATCGCTGTTGCACGT 61.050 61.111 0.00 0.00 39.64 4.49
679 690 4.455877 AGGACATCAAAACATCTTTCGTCC 59.544 41.667 0.00 0.00 40.55 4.79
744 760 2.288961 TCGGGAGAATTACGCAACTC 57.711 50.000 0.00 0.00 34.75 3.01
745 761 1.822990 TCGGGAGAATTACGCAACTCT 59.177 47.619 0.00 0.00 34.75 3.24
748 764 2.603560 GGGAGAATTACGCAACTCTTCG 59.396 50.000 0.00 0.00 0.00 3.79
775 799 4.453480 TTTCTTTGGTCAATCCTGGAGT 57.547 40.909 1.52 0.00 37.07 3.85
867 891 4.081030 CCGATGCGATGCGATGCC 62.081 66.667 0.00 0.00 0.00 4.40
868 892 4.081030 CGATGCGATGCGATGCCC 62.081 66.667 0.00 0.00 0.00 5.36
869 893 2.974148 GATGCGATGCGATGCCCA 60.974 61.111 0.00 0.00 0.00 5.36
914 938 1.880894 CGGCTAGTCTTCCGTCACA 59.119 57.895 0.00 0.00 40.72 3.58
915 939 0.456312 CGGCTAGTCTTCCGTCACAC 60.456 60.000 0.00 0.00 40.72 3.82
917 941 0.520404 GCTAGTCTTCCGTCACACGA 59.480 55.000 0.00 0.00 46.05 4.35
1035 1073 0.588252 CACAGTGCCTCTTTTCCACG 59.412 55.000 0.00 0.00 34.79 4.94
1319 1400 3.991367 GGATACGTGGAAACCCTGATAG 58.009 50.000 0.00 0.00 0.00 2.08
1324 1405 3.028850 CGTGGAAACCCTGATAGGTAGA 58.971 50.000 0.00 0.00 40.05 2.59
1335 1416 4.407296 CCTGATAGGTAGAAGCTCACCTTT 59.593 45.833 17.08 11.05 42.68 3.11
1336 1417 5.344743 TGATAGGTAGAAGCTCACCTTTG 57.655 43.478 17.08 0.00 42.68 2.77
1350 1431 0.948623 CCTTTGTGATGTGGTCGCGA 60.949 55.000 3.71 3.71 40.28 5.87
1357 1442 1.403972 GATGTGGTCGCGACGTCTTC 61.404 60.000 30.99 25.40 0.00 2.87
1401 1494 7.414540 CCCATAGACAAAACTGCTGTTTATCTC 60.415 40.741 25.90 18.33 44.70 2.75
1413 1506 4.092771 TGTTTATCTCAGTTCGTCTCCG 57.907 45.455 0.00 0.00 0.00 4.63
1422 1515 3.760151 TCAGTTCGTCTCCGAGGAATTTA 59.240 43.478 0.00 0.00 45.24 1.40
1435 1532 1.471287 GGAATTTAGTGGTCCGTTGGC 59.529 52.381 0.00 0.00 0.00 4.52
1486 1583 2.607180 TCGATGAATTGTGTACGGCATG 59.393 45.455 0.00 0.00 0.00 4.06
1487 1584 2.719798 GATGAATTGTGTACGGCATGC 58.280 47.619 9.90 9.90 0.00 4.06
1496 1593 1.153449 TACGGCATGCTGGCAGTAC 60.153 57.895 29.43 3.83 43.94 2.73
1498 1595 3.204827 GGCATGCTGGCAGTACGG 61.205 66.667 18.92 8.95 43.14 4.02
1499 1596 2.436646 GCATGCTGGCAGTACGGT 60.437 61.111 17.16 0.00 0.00 4.83
1503 1600 0.108329 ATGCTGGCAGTACGGTGTAC 60.108 55.000 17.16 0.00 0.00 2.90
1524 1621 4.501071 ACCGAGTTTATTTACGAGCATGT 58.499 39.130 0.00 0.00 0.00 3.21
1526 1623 4.565166 CCGAGTTTATTTACGAGCATGTCA 59.435 41.667 0.00 0.00 0.00 3.58
1538 1635 3.189287 CGAGCATGTCAAACTAGGCTTTT 59.811 43.478 0.00 0.00 0.00 2.27
1539 1636 4.670221 CGAGCATGTCAAACTAGGCTTTTC 60.670 45.833 0.00 0.00 0.00 2.29
1540 1637 3.507622 AGCATGTCAAACTAGGCTTTTCC 59.492 43.478 0.00 0.00 0.00 3.13
1541 1638 3.255642 GCATGTCAAACTAGGCTTTTCCA 59.744 43.478 0.00 0.00 37.29 3.53
1542 1639 4.261994 GCATGTCAAACTAGGCTTTTCCAA 60.262 41.667 0.00 0.00 37.29 3.53
1543 1640 4.911514 TGTCAAACTAGGCTTTTCCAAC 57.088 40.909 0.00 0.00 37.29 3.77
1544 1641 3.634910 TGTCAAACTAGGCTTTTCCAACC 59.365 43.478 0.00 0.00 37.29 3.77
1545 1642 2.882137 TCAAACTAGGCTTTTCCAACCG 59.118 45.455 0.00 0.00 37.29 4.44
1546 1643 2.882137 CAAACTAGGCTTTTCCAACCGA 59.118 45.455 0.00 0.00 37.29 4.69
1547 1644 2.943036 ACTAGGCTTTTCCAACCGAA 57.057 45.000 0.00 0.00 37.29 4.30
1548 1645 3.217681 ACTAGGCTTTTCCAACCGAAA 57.782 42.857 0.00 0.00 38.74 3.46
1549 1646 3.558033 ACTAGGCTTTTCCAACCGAAAA 58.442 40.909 0.00 0.00 46.01 2.29
1558 1655 6.713792 TTTTCCAACCGAAAAAGTCTTTTG 57.286 33.333 11.30 2.26 45.38 2.44
1559 1656 3.776340 TCCAACCGAAAAAGTCTTTTGC 58.224 40.909 11.30 8.58 34.83 3.68
1560 1657 2.863740 CCAACCGAAAAAGTCTTTTGCC 59.136 45.455 11.30 6.09 34.83 4.52
1561 1658 3.430236 CCAACCGAAAAAGTCTTTTGCCT 60.430 43.478 11.30 0.00 34.83 4.75
1562 1659 3.436700 ACCGAAAAAGTCTTTTGCCTG 57.563 42.857 11.30 5.23 34.83 4.85
1563 1660 2.127251 CCGAAAAAGTCTTTTGCCTGC 58.873 47.619 11.30 0.00 34.83 4.85
1564 1661 2.127251 CGAAAAAGTCTTTTGCCTGCC 58.873 47.619 11.30 0.00 34.83 4.85
1565 1662 2.483876 GAAAAAGTCTTTTGCCTGCCC 58.516 47.619 11.30 0.00 34.83 5.36
1566 1663 0.758734 AAAAGTCTTTTGCCTGCCCC 59.241 50.000 9.80 0.00 0.00 5.80
1567 1664 1.463553 AAAGTCTTTTGCCTGCCCCG 61.464 55.000 0.00 0.00 0.00 5.73
1568 1665 4.056125 GTCTTTTGCCTGCCCCGC 62.056 66.667 0.00 0.00 0.00 6.13
1569 1666 4.284550 TCTTTTGCCTGCCCCGCT 62.285 61.111 0.00 0.00 0.00 5.52
1570 1667 3.305516 CTTTTGCCTGCCCCGCTT 61.306 61.111 0.00 0.00 0.00 4.68
1571 1668 2.841988 TTTTGCCTGCCCCGCTTT 60.842 55.556 0.00 0.00 0.00 3.51
1572 1669 3.162505 TTTTGCCTGCCCCGCTTTG 62.163 57.895 0.00 0.00 0.00 2.77
1573 1670 4.594854 TTGCCTGCCCCGCTTTGA 62.595 61.111 0.00 0.00 0.00 2.69
1574 1671 4.594854 TGCCTGCCCCGCTTTGAA 62.595 61.111 0.00 0.00 0.00 2.69
1575 1672 3.070576 GCCTGCCCCGCTTTGAAT 61.071 61.111 0.00 0.00 0.00 2.57
1576 1673 3.068729 GCCTGCCCCGCTTTGAATC 62.069 63.158 0.00 0.00 0.00 2.52
1577 1674 2.764314 CCTGCCCCGCTTTGAATCG 61.764 63.158 0.00 0.00 0.00 3.34
1578 1675 1.745115 CTGCCCCGCTTTGAATCGA 60.745 57.895 0.00 0.00 0.00 3.59
1579 1676 1.077787 TGCCCCGCTTTGAATCGAT 60.078 52.632 0.00 0.00 0.00 3.59
1580 1677 1.356624 GCCCCGCTTTGAATCGATG 59.643 57.895 0.00 0.00 0.00 3.84
1581 1678 1.376609 GCCCCGCTTTGAATCGATGT 61.377 55.000 0.00 0.00 0.00 3.06
1582 1679 1.094785 CCCCGCTTTGAATCGATGTT 58.905 50.000 0.00 0.00 0.00 2.71
1583 1680 1.472480 CCCCGCTTTGAATCGATGTTT 59.528 47.619 0.00 0.00 0.00 2.83
1584 1681 2.477863 CCCCGCTTTGAATCGATGTTTC 60.478 50.000 0.00 0.00 0.00 2.78
1585 1682 2.477863 CCCGCTTTGAATCGATGTTTCC 60.478 50.000 0.00 0.00 0.00 3.13
1586 1683 2.420022 CCGCTTTGAATCGATGTTTCCT 59.580 45.455 0.00 0.00 0.00 3.36
1587 1684 3.119849 CCGCTTTGAATCGATGTTTCCTT 60.120 43.478 0.00 0.00 0.00 3.36
1588 1685 4.475944 CGCTTTGAATCGATGTTTCCTTT 58.524 39.130 0.00 0.00 0.00 3.11
1589 1686 4.321745 CGCTTTGAATCGATGTTTCCTTTG 59.678 41.667 0.00 0.00 0.00 2.77
1590 1687 5.222631 GCTTTGAATCGATGTTTCCTTTGT 58.777 37.500 0.00 0.00 0.00 2.83
1591 1688 6.378582 GCTTTGAATCGATGTTTCCTTTGTA 58.621 36.000 0.00 0.00 0.00 2.41
1592 1689 6.861055 GCTTTGAATCGATGTTTCCTTTGTAA 59.139 34.615 0.00 0.00 0.00 2.41
1605 1702 5.422666 TCCTTTGTAATAATCTGCATGCG 57.577 39.130 14.09 8.20 0.00 4.73
1626 1723 2.086869 CGAATGTGAGTGCCAAATCCT 58.913 47.619 0.00 0.00 0.00 3.24
1633 1730 3.319122 GTGAGTGCCAAATCCTTGTTTCT 59.681 43.478 0.00 0.00 0.00 2.52
1635 1732 4.037923 TGAGTGCCAAATCCTTGTTTCTTC 59.962 41.667 0.00 0.00 0.00 2.87
1654 1751 3.596066 CTGTGTGCTCTCCGGTGGG 62.596 68.421 0.00 0.00 0.00 4.61
1664 1761 0.899720 CTCCGGTGGGTTAGCACTTA 59.100 55.000 0.00 0.00 33.83 2.24
1691 1788 2.271821 TGGTCATGCCACCCATCG 59.728 61.111 4.93 0.00 43.61 3.84
1700 1803 2.267006 CACCCATCGCTGCTGAGT 59.733 61.111 0.00 0.00 0.00 3.41
1728 1831 3.366679 GGAGTTCCATGTGCATTCAAGTG 60.367 47.826 0.00 0.00 35.64 3.16
1737 1840 4.172505 TGTGCATTCAAGTGTTTTGTCAC 58.827 39.130 0.00 0.00 38.46 3.67
1780 1883 1.742831 GCATTCACGTATTTGGCCAGA 59.257 47.619 5.11 0.08 0.00 3.86
1785 1888 0.690762 ACGTATTTGGCCAGAGGTGT 59.309 50.000 5.11 0.21 0.00 4.16
1790 1893 2.380064 TTTGGCCAGAGGTGTGAATT 57.620 45.000 5.11 0.00 0.00 2.17
1800 1903 4.022849 CAGAGGTGTGAATTCCCTGTTTTC 60.023 45.833 6.48 0.00 0.00 2.29
1825 1928 5.313712 GTTCATCTGACAGGGTTTTAAGGA 58.686 41.667 1.81 0.00 0.00 3.36
1838 1941 4.393371 GGTTTTAAGGACTGATGAGAGCAC 59.607 45.833 0.00 0.00 0.00 4.40
1961 2064 4.620589 TTGATTTAACCTGTCGGTACCA 57.379 40.909 13.54 0.00 44.73 3.25
1968 2071 0.036671 CCTGTCGGTACCACTTTCCC 60.037 60.000 13.54 0.00 0.00 3.97
1996 2099 1.075601 TTGCAGGATCCTCCAAACCT 58.924 50.000 16.10 0.00 39.61 3.50
2047 2150 0.676782 AAAGCGCTCCGGTTAAGCAT 60.677 50.000 12.06 0.00 46.74 3.79
2167 2270 3.056607 GCAATAGCAAATGGTTGTCCACT 60.057 43.478 0.00 0.00 43.16 4.00
2220 2323 6.595682 TGTTTATTGCCCAATTTCTTTTCCA 58.404 32.000 0.00 0.00 32.50 3.53
2222 2325 7.174599 TGTTTATTGCCCAATTTCTTTTCCATG 59.825 33.333 0.00 0.00 32.50 3.66
2284 2387 5.415701 TGAAGCTTCTATCACCAAAATCACC 59.584 40.000 26.09 0.00 0.00 4.02
2389 2492 2.409948 ACTCCCTCATTTGTGCTAGC 57.590 50.000 8.10 8.10 0.00 3.42
2533 2636 4.068599 CTCCGAGCAGTAGTGATATCTCA 58.931 47.826 0.42 0.00 0.00 3.27
2896 2999 2.432146 TGTGATAAGCACCCTAGCTCTG 59.568 50.000 0.00 0.00 45.89 3.35
3099 3202 6.928492 TGCATTGTTTTCCAGACTTAATTTCC 59.072 34.615 0.00 0.00 0.00 3.13
3211 3314 9.734984 TTAGTTTCTTCCCTTTTCCTATGTAAG 57.265 33.333 0.00 0.00 0.00 2.34
3234 3337 6.767456 AGAAGAGATGTATCATCATGGGAAC 58.233 40.000 11.47 0.00 0.00 3.62
3407 3515 6.072673 GGGTAGTGAAAACTACTGATTTGGTG 60.073 42.308 13.97 0.00 41.57 4.17
3545 3682 4.656112 TCTGGAGGAGTTTCTTGTTCTTCT 59.344 41.667 0.00 0.00 0.00 2.85
3577 3714 7.011389 TGTTCAGTTTCTAGTTGTCATCTTGTG 59.989 37.037 0.00 0.00 0.00 3.33
3583 3720 3.845781 AGTTGTCATCTTGTGGAGTGT 57.154 42.857 0.00 0.00 0.00 3.55
3614 3751 6.707440 TTAAGAAGCAAGAACACATGGAAA 57.293 33.333 0.00 0.00 0.00 3.13
3781 3922 3.949586 TTTGTGCTCCATATCCCATGA 57.050 42.857 0.00 0.00 0.00 3.07
3786 3927 5.951204 TGTGCTCCATATCCCATGATTTTA 58.049 37.500 0.00 0.00 32.18 1.52
3811 3952 4.947388 ACAAAACCGCATTACATCCAGTAT 59.053 37.500 0.00 0.00 31.53 2.12
4144 4285 3.701542 TGGCAACACAACCATTCTGTTTA 59.298 39.130 0.00 0.00 46.17 2.01
4218 4381 7.194607 TGACATTGACTGAAAGAATCTTCAC 57.805 36.000 0.00 0.00 37.43 3.18
4235 4398 1.678635 ACCGTGTTGCCCCATCATG 60.679 57.895 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.261522 GGTGTATTTCAAACTCTATTCTCTCCT 58.738 37.037 0.00 0.00 0.00 3.69
5 6 8.261522 AGGTGTATTTCAAACTCTATTCTCTCC 58.738 37.037 0.00 0.00 0.00 3.71
6 7 9.308318 GAGGTGTATTTCAAACTCTATTCTCTC 57.692 37.037 0.00 0.00 32.86 3.20
7 8 8.816894 TGAGGTGTATTTCAAACTCTATTCTCT 58.183 33.333 0.00 0.00 35.06 3.10
8 9 9.606631 ATGAGGTGTATTTCAAACTCTATTCTC 57.393 33.333 0.00 0.00 35.06 2.87
13 14 9.653287 CAGTTATGAGGTGTATTTCAAACTCTA 57.347 33.333 0.00 0.00 35.06 2.43
14 15 8.375506 TCAGTTATGAGGTGTATTTCAAACTCT 58.624 33.333 0.00 0.00 35.06 3.24
15 16 8.547967 TCAGTTATGAGGTGTATTTCAAACTC 57.452 34.615 0.00 0.00 34.78 3.01
16 17 8.918202 TTCAGTTATGAGGTGTATTTCAAACT 57.082 30.769 0.00 0.00 36.61 2.66
17 18 9.612620 CTTTCAGTTATGAGGTGTATTTCAAAC 57.387 33.333 0.00 0.00 36.61 2.93
18 19 9.567776 TCTTTCAGTTATGAGGTGTATTTCAAA 57.432 29.630 0.00 0.00 36.61 2.69
19 20 8.999431 GTCTTTCAGTTATGAGGTGTATTTCAA 58.001 33.333 0.00 0.00 36.61 2.69
20 21 8.154203 TGTCTTTCAGTTATGAGGTGTATTTCA 58.846 33.333 0.00 0.00 36.61 2.69
21 22 8.547967 TGTCTTTCAGTTATGAGGTGTATTTC 57.452 34.615 0.00 0.00 36.61 2.17
22 23 8.918202 TTGTCTTTCAGTTATGAGGTGTATTT 57.082 30.769 0.00 0.00 36.61 1.40
23 24 8.918202 TTTGTCTTTCAGTTATGAGGTGTATT 57.082 30.769 0.00 0.00 36.61 1.89
24 25 8.918202 TTTTGTCTTTCAGTTATGAGGTGTAT 57.082 30.769 0.00 0.00 36.61 2.29
25 26 8.208224 TCTTTTGTCTTTCAGTTATGAGGTGTA 58.792 33.333 0.00 0.00 36.61 2.90
26 27 7.054124 TCTTTTGTCTTTCAGTTATGAGGTGT 58.946 34.615 0.00 0.00 36.61 4.16
27 28 7.227512 ACTCTTTTGTCTTTCAGTTATGAGGTG 59.772 37.037 0.00 0.00 36.61 4.00
28 29 7.227512 CACTCTTTTGTCTTTCAGTTATGAGGT 59.772 37.037 0.00 0.00 36.61 3.85
29 30 7.227512 ACACTCTTTTGTCTTTCAGTTATGAGG 59.772 37.037 0.00 0.00 36.61 3.86
30 31 8.147642 ACACTCTTTTGTCTTTCAGTTATGAG 57.852 34.615 0.00 0.00 36.61 2.90
31 32 8.506168 AACACTCTTTTGTCTTTCAGTTATGA 57.494 30.769 0.00 0.00 0.00 2.15
32 33 9.651718 GTAACACTCTTTTGTCTTTCAGTTATG 57.348 33.333 0.00 0.00 0.00 1.90
33 34 9.614792 AGTAACACTCTTTTGTCTTTCAGTTAT 57.385 29.630 0.00 0.00 0.00 1.89
34 35 9.095065 GAGTAACACTCTTTTGTCTTTCAGTTA 57.905 33.333 0.00 0.00 41.88 2.24
35 36 7.923414 AGTAACACTCTTTTGTCTTTCAGTT 57.077 32.000 0.00 0.00 0.00 3.16
36 37 7.541122 GAGTAACACTCTTTTGTCTTTCAGT 57.459 36.000 0.00 0.00 41.88 3.41
50 51 5.361285 ACATCATACTGGGAGAGTAACACTC 59.639 44.000 0.00 0.00 45.38 3.51
51 52 5.273208 ACATCATACTGGGAGAGTAACACT 58.727 41.667 0.00 0.00 40.67 3.55
52 53 5.599999 ACATCATACTGGGAGAGTAACAC 57.400 43.478 0.00 0.00 40.67 3.32
53 54 5.626809 GCAACATCATACTGGGAGAGTAACA 60.627 44.000 0.00 0.00 40.67 2.41
54 55 4.811557 GCAACATCATACTGGGAGAGTAAC 59.188 45.833 0.00 0.00 40.67 2.50
55 56 4.141711 GGCAACATCATACTGGGAGAGTAA 60.142 45.833 0.00 0.00 40.67 2.24
56 57 3.388024 GGCAACATCATACTGGGAGAGTA 59.612 47.826 0.00 0.00 41.57 2.59
57 58 2.171448 GGCAACATCATACTGGGAGAGT 59.829 50.000 0.00 0.00 38.88 3.24
58 59 2.486191 GGGCAACATCATACTGGGAGAG 60.486 54.545 0.00 0.00 39.74 3.20
59 60 1.490490 GGGCAACATCATACTGGGAGA 59.510 52.381 0.00 0.00 39.74 3.71
60 61 1.212688 TGGGCAACATCATACTGGGAG 59.787 52.381 0.00 0.00 39.74 4.30
61 62 1.294041 TGGGCAACATCATACTGGGA 58.706 50.000 0.00 0.00 39.74 4.37
62 63 2.142356 TTGGGCAACATCATACTGGG 57.858 50.000 0.00 0.00 39.74 4.45
63 64 4.403432 AGAAATTGGGCAACATCATACTGG 59.597 41.667 0.00 0.00 39.74 4.00
64 65 5.587388 AGAAATTGGGCAACATCATACTG 57.413 39.130 0.00 0.00 39.74 2.74
65 66 5.163622 CGAAGAAATTGGGCAACATCATACT 60.164 40.000 0.00 0.00 39.74 2.12
66 67 5.036737 CGAAGAAATTGGGCAACATCATAC 58.963 41.667 0.00 0.00 39.74 2.39
67 68 4.439974 GCGAAGAAATTGGGCAACATCATA 60.440 41.667 0.00 0.00 39.74 2.15
68 69 3.676873 GCGAAGAAATTGGGCAACATCAT 60.677 43.478 0.00 0.00 39.74 2.45
69 70 2.352617 GCGAAGAAATTGGGCAACATCA 60.353 45.455 0.00 0.00 39.74 3.07
70 71 2.262211 GCGAAGAAATTGGGCAACATC 58.738 47.619 0.00 0.00 39.74 3.06
71 72 1.066929 GGCGAAGAAATTGGGCAACAT 60.067 47.619 0.00 0.00 39.74 2.71
72 73 0.316841 GGCGAAGAAATTGGGCAACA 59.683 50.000 0.00 0.00 39.74 3.33
73 74 0.389817 GGGCGAAGAAATTGGGCAAC 60.390 55.000 0.00 0.00 0.00 4.17
74 75 1.540435 GGGGCGAAGAAATTGGGCAA 61.540 55.000 0.00 0.00 0.00 4.52
75 76 1.981853 GGGGCGAAGAAATTGGGCA 60.982 57.895 0.00 0.00 0.00 5.36
76 77 2.721167 GGGGGCGAAGAAATTGGGC 61.721 63.158 0.00 0.00 0.00 5.36
77 78 0.902516 TTGGGGGCGAAGAAATTGGG 60.903 55.000 0.00 0.00 0.00 4.12
78 79 0.972883 TTTGGGGGCGAAGAAATTGG 59.027 50.000 0.00 0.00 0.00 3.16
79 80 2.298729 TCTTTTGGGGGCGAAGAAATTG 59.701 45.455 0.00 0.00 0.00 2.32
80 81 2.604139 TCTTTTGGGGGCGAAGAAATT 58.396 42.857 0.00 0.00 0.00 1.82
81 82 2.302587 TCTTTTGGGGGCGAAGAAAT 57.697 45.000 0.00 0.00 0.00 2.17
82 83 1.892474 CATCTTTTGGGGGCGAAGAAA 59.108 47.619 0.00 0.00 33.56 2.52
83 84 1.544724 CATCTTTTGGGGGCGAAGAA 58.455 50.000 0.00 0.00 33.56 2.52
84 85 0.323360 CCATCTTTTGGGGGCGAAGA 60.323 55.000 0.00 0.00 42.33 2.87
85 86 2.192605 CCATCTTTTGGGGGCGAAG 58.807 57.895 0.00 0.00 42.33 3.79
86 87 4.432601 CCATCTTTTGGGGGCGAA 57.567 55.556 0.00 0.00 42.33 4.70
91 92 7.702348 ATCAAGAGTGAAACCATCTTTTGGGG 61.702 42.308 0.00 0.00 43.15 4.96
92 93 5.244626 ATCAAGAGTGAAACCATCTTTTGGG 59.755 40.000 0.00 0.00 43.15 4.12
93 94 6.154445 CATCAAGAGTGAAACCATCTTTTGG 58.846 40.000 0.00 0.00 43.91 3.28
94 95 6.742109 ACATCAAGAGTGAAACCATCTTTTG 58.258 36.000 0.00 0.00 37.80 2.44
95 96 6.966534 ACATCAAGAGTGAAACCATCTTTT 57.033 33.333 0.00 0.00 37.80 2.27
96 97 6.322201 ACAACATCAAGAGTGAAACCATCTTT 59.678 34.615 0.00 0.00 37.80 2.52
97 98 5.829924 ACAACATCAAGAGTGAAACCATCTT 59.170 36.000 0.00 0.00 37.80 2.40
98 99 5.380043 ACAACATCAAGAGTGAAACCATCT 58.620 37.500 0.00 0.00 37.80 2.90
99 100 5.695851 ACAACATCAAGAGTGAAACCATC 57.304 39.130 0.00 0.00 37.80 3.51
100 101 5.593909 TCAACAACATCAAGAGTGAAACCAT 59.406 36.000 0.00 0.00 37.80 3.55
101 102 4.946772 TCAACAACATCAAGAGTGAAACCA 59.053 37.500 0.00 0.00 37.80 3.67
102 103 5.499139 TCAACAACATCAAGAGTGAAACC 57.501 39.130 0.00 0.00 37.80 3.27
103 104 4.972440 GCTCAACAACATCAAGAGTGAAAC 59.028 41.667 0.00 0.00 37.30 2.78
104 105 4.639755 TGCTCAACAACATCAAGAGTGAAA 59.360 37.500 0.00 0.00 37.30 2.69
105 106 4.198530 TGCTCAACAACATCAAGAGTGAA 58.801 39.130 0.00 0.00 37.30 3.18
106 107 3.807553 TGCTCAACAACATCAAGAGTGA 58.192 40.909 0.00 0.00 38.41 3.41
107 108 4.556942 TTGCTCAACAACATCAAGAGTG 57.443 40.909 0.00 0.00 31.73 3.51
108 109 5.343249 GTTTTGCTCAACAACATCAAGAGT 58.657 37.500 0.00 0.00 38.23 3.24
109 110 4.741676 GGTTTTGCTCAACAACATCAAGAG 59.258 41.667 1.71 0.00 38.23 2.85
110 111 4.681744 GGTTTTGCTCAACAACATCAAGA 58.318 39.130 1.71 0.00 38.23 3.02
111 112 3.486841 CGGTTTTGCTCAACAACATCAAG 59.513 43.478 1.71 0.00 38.23 3.02
112 113 3.119316 ACGGTTTTGCTCAACAACATCAA 60.119 39.130 0.00 0.00 38.23 2.57
113 114 2.425312 ACGGTTTTGCTCAACAACATCA 59.575 40.909 0.00 0.00 38.23 3.07
114 115 3.078594 ACGGTTTTGCTCAACAACATC 57.921 42.857 0.00 0.00 38.23 3.06
115 116 3.186119 CAACGGTTTTGCTCAACAACAT 58.814 40.909 0.00 0.00 38.23 2.71
116 117 2.600731 CAACGGTTTTGCTCAACAACA 58.399 42.857 0.00 0.00 38.23 3.33
117 118 1.923864 CCAACGGTTTTGCTCAACAAC 59.076 47.619 0.00 0.00 38.23 3.32
118 119 1.819288 TCCAACGGTTTTGCTCAACAA 59.181 42.857 0.00 0.00 36.13 2.83
119 120 1.403679 CTCCAACGGTTTTGCTCAACA 59.596 47.619 0.00 0.00 0.00 3.33
120 121 1.269051 CCTCCAACGGTTTTGCTCAAC 60.269 52.381 0.00 0.00 0.00 3.18
121 122 1.028905 CCTCCAACGGTTTTGCTCAA 58.971 50.000 0.00 0.00 0.00 3.02
122 123 1.452145 GCCTCCAACGGTTTTGCTCA 61.452 55.000 0.00 0.00 0.00 4.26
123 124 1.285950 GCCTCCAACGGTTTTGCTC 59.714 57.895 0.00 0.00 0.00 4.26
124 125 0.827507 ATGCCTCCAACGGTTTTGCT 60.828 50.000 0.00 0.00 0.00 3.91
125 126 0.667184 CATGCCTCCAACGGTTTTGC 60.667 55.000 0.00 0.00 0.00 3.68
126 127 0.667184 GCATGCCTCCAACGGTTTTG 60.667 55.000 6.36 0.00 0.00 2.44
127 128 0.827507 AGCATGCCTCCAACGGTTTT 60.828 50.000 15.66 0.00 0.00 2.43
128 129 1.228552 AGCATGCCTCCAACGGTTT 60.229 52.632 15.66 0.00 0.00 3.27
129 130 1.675641 GAGCATGCCTCCAACGGTT 60.676 57.895 15.66 0.00 34.35 4.44
130 131 2.045926 GAGCATGCCTCCAACGGT 60.046 61.111 15.66 0.00 34.35 4.83
131 132 0.962356 AAAGAGCATGCCTCCAACGG 60.962 55.000 15.66 0.00 41.74 4.44
132 133 0.883833 AAAAGAGCATGCCTCCAACG 59.116 50.000 15.66 0.00 41.74 4.10
133 134 1.615392 ACAAAAGAGCATGCCTCCAAC 59.385 47.619 15.66 0.00 41.74 3.77
134 135 1.888512 GACAAAAGAGCATGCCTCCAA 59.111 47.619 15.66 0.00 41.74 3.53
135 136 1.538047 GACAAAAGAGCATGCCTCCA 58.462 50.000 15.66 0.00 41.74 3.86
136 137 0.449388 CGACAAAAGAGCATGCCTCC 59.551 55.000 15.66 3.99 41.74 4.30
137 138 1.442769 TCGACAAAAGAGCATGCCTC 58.557 50.000 15.66 11.38 41.07 4.70
138 139 1.896220 TTCGACAAAAGAGCATGCCT 58.104 45.000 15.66 8.56 0.00 4.75
139 140 2.704725 TTTCGACAAAAGAGCATGCC 57.295 45.000 15.66 6.03 0.00 4.40
140 141 4.090498 GGATTTTTCGACAAAAGAGCATGC 59.910 41.667 10.51 10.51 32.96 4.06
141 142 4.321745 CGGATTTTTCGACAAAAGAGCATG 59.678 41.667 0.11 0.00 32.96 4.06
142 143 4.475944 CGGATTTTTCGACAAAAGAGCAT 58.524 39.130 0.11 0.00 32.96 3.79
143 144 3.304391 CCGGATTTTTCGACAAAAGAGCA 60.304 43.478 0.00 0.00 32.96 4.26
144 145 3.234386 CCGGATTTTTCGACAAAAGAGC 58.766 45.455 0.00 0.00 32.96 4.09
145 146 3.821841 CCCGGATTTTTCGACAAAAGAG 58.178 45.455 0.73 0.00 32.96 2.85
146 147 2.030628 GCCCGGATTTTTCGACAAAAGA 60.031 45.455 0.73 0.00 32.96 2.52
147 148 2.287909 TGCCCGGATTTTTCGACAAAAG 60.288 45.455 0.73 0.00 32.96 2.27
148 149 1.681793 TGCCCGGATTTTTCGACAAAA 59.318 42.857 0.73 4.66 0.00 2.44
149 150 1.319541 TGCCCGGATTTTTCGACAAA 58.680 45.000 0.73 0.00 0.00 2.83
150 151 1.540267 ATGCCCGGATTTTTCGACAA 58.460 45.000 0.73 0.00 0.00 3.18
151 152 1.470890 GAATGCCCGGATTTTTCGACA 59.529 47.619 0.73 0.00 0.00 4.35
152 153 1.202256 GGAATGCCCGGATTTTTCGAC 60.202 52.381 0.73 0.00 0.00 4.20
153 154 1.099689 GGAATGCCCGGATTTTTCGA 58.900 50.000 0.73 0.00 0.00 3.71
154 155 3.641031 GGAATGCCCGGATTTTTCG 57.359 52.632 0.73 0.00 0.00 3.46
164 165 1.238625 TTGGAACGAACGGAATGCCC 61.239 55.000 0.00 0.00 0.00 5.36
165 166 0.594110 TTTGGAACGAACGGAATGCC 59.406 50.000 0.00 0.00 0.00 4.40
166 167 2.250188 CATTTGGAACGAACGGAATGC 58.750 47.619 0.00 0.00 0.00 3.56
167 168 2.227865 ACCATTTGGAACGAACGGAATG 59.772 45.455 3.01 0.00 38.94 2.67
168 169 2.486592 GACCATTTGGAACGAACGGAAT 59.513 45.455 3.01 0.00 38.94 3.01
169 170 1.874872 GACCATTTGGAACGAACGGAA 59.125 47.619 3.01 0.00 38.94 4.30
170 171 1.515081 GACCATTTGGAACGAACGGA 58.485 50.000 3.01 0.00 38.94 4.69
171 172 0.519961 GGACCATTTGGAACGAACGG 59.480 55.000 3.01 0.00 38.94 4.44
172 173 1.231221 TGGACCATTTGGAACGAACG 58.769 50.000 3.01 0.00 38.94 3.95
173 174 3.506067 AGAATGGACCATTTGGAACGAAC 59.494 43.478 20.71 5.05 33.90 3.95
174 175 3.761897 AGAATGGACCATTTGGAACGAA 58.238 40.909 20.71 0.00 33.90 3.85
175 176 3.433306 AGAATGGACCATTTGGAACGA 57.567 42.857 20.71 0.00 33.90 3.85
176 177 5.835113 ATTAGAATGGACCATTTGGAACG 57.165 39.130 20.71 0.00 33.90 3.95
202 203 8.028652 AGGATGGACCATTTTTGTCTTAAAAA 57.971 30.769 8.78 0.00 42.04 1.94
203 204 7.610580 AGGATGGACCATTTTTGTCTTAAAA 57.389 32.000 8.78 0.00 42.04 1.52
204 205 8.713708 TTAGGATGGACCATTTTTGTCTTAAA 57.286 30.769 8.78 0.00 42.04 1.52
205 206 8.893563 ATTAGGATGGACCATTTTTGTCTTAA 57.106 30.769 8.78 3.17 42.04 1.85
206 207 9.627123 CTATTAGGATGGACCATTTTTGTCTTA 57.373 33.333 8.78 0.00 42.04 2.10
207 208 7.068716 GCTATTAGGATGGACCATTTTTGTCTT 59.931 37.037 8.78 0.00 42.04 3.01
208 209 6.547510 GCTATTAGGATGGACCATTTTTGTCT 59.452 38.462 8.78 3.12 42.04 3.41
209 210 6.321181 TGCTATTAGGATGGACCATTTTTGTC 59.679 38.462 8.78 0.00 42.04 3.18
210 211 6.194235 TGCTATTAGGATGGACCATTTTTGT 58.806 36.000 8.78 0.00 42.04 2.83
211 212 6.713762 TGCTATTAGGATGGACCATTTTTG 57.286 37.500 8.78 0.00 42.04 2.44
212 213 7.068702 TCATGCTATTAGGATGGACCATTTTT 58.931 34.615 20.87 0.13 43.25 1.94
213 214 6.613699 TCATGCTATTAGGATGGACCATTTT 58.386 36.000 20.87 2.71 43.25 1.82
249 255 7.201741 GGGCCAAAACAAAACAAAAATAGCTTA 60.202 33.333 4.39 0.00 0.00 3.09
251 257 5.067153 GGGCCAAAACAAAACAAAAATAGCT 59.933 36.000 4.39 0.00 0.00 3.32
260 266 1.153349 GGCGGGCCAAAACAAAACA 60.153 52.632 4.39 0.00 35.81 2.83
261 267 1.890041 GGGCGGGCCAAAACAAAAC 60.890 57.895 16.76 0.00 37.98 2.43
262 268 1.910580 TTGGGCGGGCCAAAACAAAA 61.911 50.000 31.10 9.19 37.98 2.44
321 327 8.154203 TCTAATTTCATTAATCTCCGTGCCATA 58.846 33.333 0.00 0.00 0.00 2.74
327 333 9.838339 ATGTTCTCTAATTTCATTAATCTCCGT 57.162 29.630 0.00 0.00 0.00 4.69
400 406 5.747197 GTGAGATTGCAAGCCTCAATATTTG 59.253 40.000 26.17 0.00 38.49 2.32
405 411 2.799017 TGTGAGATTGCAAGCCTCAAT 58.201 42.857 26.17 4.69 38.49 2.57
411 417 3.082698 TGTGTTTGTGAGATTGCAAGC 57.917 42.857 6.58 6.58 0.00 4.01
414 420 2.957680 ACCATGTGTTTGTGAGATTGCA 59.042 40.909 0.00 0.00 0.00 4.08
415 421 3.648339 ACCATGTGTTTGTGAGATTGC 57.352 42.857 0.00 0.00 0.00 3.56
428 434 2.941415 GCCCCTAGAGTCAAACCATGTG 60.941 54.545 0.00 0.00 0.00 3.21
436 442 1.995626 GGCCAGCCCCTAGAGTCAA 60.996 63.158 0.00 0.00 0.00 3.18
457 463 4.859304 AAATAAGGTTTTCGGGTTGGTC 57.141 40.909 0.00 0.00 0.00 4.02
578 585 3.655810 CTCTGCAGTCCTGGTCGCC 62.656 68.421 14.67 0.00 0.00 5.54
581 588 2.777832 AATTCTCTGCAGTCCTGGTC 57.222 50.000 14.67 0.00 0.00 4.02
585 596 6.040955 TCGATGTATAAATTCTCTGCAGTCCT 59.959 38.462 14.67 0.00 0.00 3.85
590 601 7.661040 TGATCTCGATGTATAAATTCTCTGCA 58.339 34.615 0.00 0.00 0.00 4.41
647 658 7.118723 AGATGTTTTGATGTCCTGCCTTTATA 58.881 34.615 0.00 0.00 0.00 0.98
679 690 0.745845 CCCGAACTGGAGCAGATTGG 60.746 60.000 0.00 0.00 42.00 3.16
744 760 4.488126 TGACCAAAGAAAATGAGCGAAG 57.512 40.909 0.00 0.00 0.00 3.79
745 761 4.909696 TTGACCAAAGAAAATGAGCGAA 57.090 36.364 0.00 0.00 0.00 4.70
748 764 5.166398 CAGGATTGACCAAAGAAAATGAGC 58.834 41.667 0.00 0.00 42.04 4.26
775 799 1.210722 TGTGGACTTGTGGTTGCAGTA 59.789 47.619 0.00 0.00 0.00 2.74
868 892 4.081030 CTTGTGACGCTGCCGCTG 62.081 66.667 0.00 0.00 38.22 5.18
869 893 4.609018 ACTTGTGACGCTGCCGCT 62.609 61.111 0.00 0.00 38.22 5.52
872 896 2.029844 GAGGACTTGTGACGCTGCC 61.030 63.158 0.00 0.00 0.00 4.85
873 897 2.375766 CGAGGACTTGTGACGCTGC 61.376 63.158 0.00 0.00 0.00 5.25
874 898 2.375766 GCGAGGACTTGTGACGCTG 61.376 63.158 0.00 0.00 44.67 5.18
875 899 2.049063 GCGAGGACTTGTGACGCT 60.049 61.111 0.00 0.00 44.67 5.07
877 901 0.798771 GCTAGCGAGGACTTGTGACG 60.799 60.000 0.00 0.00 0.00 4.35
914 938 1.206072 GCCGTCGCTATCGTATCGT 59.794 57.895 0.00 0.00 36.96 3.73
915 939 1.857853 CGCCGTCGCTATCGTATCG 60.858 63.158 0.00 0.00 36.96 2.92
917 941 0.308684 TTTCGCCGTCGCTATCGTAT 59.691 50.000 0.00 0.00 36.96 3.06
958 982 1.660264 CCTTTTTGTTCCGTGCCGC 60.660 57.895 0.00 0.00 0.00 6.53
1209 1254 3.300388 TGCGATTTCTATCTGGACCTCT 58.700 45.455 0.00 0.00 0.00 3.69
1335 1416 2.430075 CGTCGCGACCACATCACA 60.430 61.111 31.84 0.00 0.00 3.58
1336 1417 2.430244 ACGTCGCGACCACATCAC 60.430 61.111 31.84 6.96 0.00 3.06
1413 1506 3.007635 CCAACGGACCACTAAATTCCTC 58.992 50.000 0.00 0.00 0.00 3.71
1486 1583 1.447314 GGTACACCGTACTGCCAGC 60.447 63.158 4.43 0.00 0.00 4.85
1487 1584 4.904466 GGTACACCGTACTGCCAG 57.096 61.111 4.43 0.00 0.00 4.85
1498 1595 4.858692 TGCTCGTAAATAAACTCGGTACAC 59.141 41.667 0.00 0.00 0.00 2.90
1499 1596 5.058149 TGCTCGTAAATAAACTCGGTACA 57.942 39.130 0.00 0.00 0.00 2.90
1503 1600 4.565166 TGACATGCTCGTAAATAAACTCGG 59.435 41.667 0.00 0.00 0.00 4.63
1506 1603 7.435068 AGTTTGACATGCTCGTAAATAAACT 57.565 32.000 0.00 0.00 32.75 2.66
1514 1611 2.496070 AGCCTAGTTTGACATGCTCGTA 59.504 45.455 0.00 0.00 0.00 3.43
1524 1621 2.882137 CGGTTGGAAAAGCCTAGTTTGA 59.118 45.455 0.00 0.00 37.63 2.69
1526 1623 3.217681 TCGGTTGGAAAAGCCTAGTTT 57.782 42.857 0.00 0.00 37.63 2.66
1538 1635 3.429684 GGCAAAAGACTTTTTCGGTTGGA 60.430 43.478 10.52 0.00 34.34 3.53
1539 1636 2.863740 GGCAAAAGACTTTTTCGGTTGG 59.136 45.455 10.52 0.00 34.34 3.77
1540 1637 3.551485 CAGGCAAAAGACTTTTTCGGTTG 59.449 43.478 10.52 0.89 34.34 3.77
1541 1638 3.780902 CAGGCAAAAGACTTTTTCGGTT 58.219 40.909 10.52 0.00 34.34 4.44
1542 1639 2.481276 GCAGGCAAAAGACTTTTTCGGT 60.481 45.455 10.52 0.00 34.34 4.69
1543 1640 2.127251 GCAGGCAAAAGACTTTTTCGG 58.873 47.619 10.52 8.12 34.34 4.30
1544 1641 2.127251 GGCAGGCAAAAGACTTTTTCG 58.873 47.619 10.52 2.37 34.34 3.46
1545 1642 2.483876 GGGCAGGCAAAAGACTTTTTC 58.516 47.619 10.52 6.12 34.34 2.29
1546 1643 1.140852 GGGGCAGGCAAAAGACTTTTT 59.859 47.619 10.52 0.00 36.97 1.94
1547 1644 0.758734 GGGGCAGGCAAAAGACTTTT 59.241 50.000 7.38 7.38 0.00 2.27
1548 1645 1.463553 CGGGGCAGGCAAAAGACTTT 61.464 55.000 0.00 0.00 0.00 2.66
1549 1646 1.903404 CGGGGCAGGCAAAAGACTT 60.903 57.895 0.00 0.00 0.00 3.01
1550 1647 2.282462 CGGGGCAGGCAAAAGACT 60.282 61.111 0.00 0.00 0.00 3.24
1551 1648 4.056125 GCGGGGCAGGCAAAAGAC 62.056 66.667 0.00 0.00 0.00 3.01
1552 1649 3.808218 AAGCGGGGCAGGCAAAAGA 62.808 57.895 0.00 0.00 0.00 2.52
1553 1650 2.871253 AAAGCGGGGCAGGCAAAAG 61.871 57.895 0.00 0.00 0.00 2.27
1555 1652 3.614698 CAAAGCGGGGCAGGCAAA 61.615 61.111 0.00 0.00 0.00 3.68
1556 1653 4.594854 TCAAAGCGGGGCAGGCAA 62.595 61.111 0.00 0.00 0.00 4.52
1557 1654 3.884704 ATTCAAAGCGGGGCAGGCA 62.885 57.895 0.00 0.00 0.00 4.75
1558 1655 3.068729 GATTCAAAGCGGGGCAGGC 62.069 63.158 0.00 0.00 0.00 4.85
1559 1656 2.764314 CGATTCAAAGCGGGGCAGG 61.764 63.158 0.00 0.00 33.58 4.85
1560 1657 1.097547 ATCGATTCAAAGCGGGGCAG 61.098 55.000 0.17 0.00 38.53 4.85
1561 1658 1.077787 ATCGATTCAAAGCGGGGCA 60.078 52.632 0.17 0.00 38.53 5.36
1562 1659 1.356624 CATCGATTCAAAGCGGGGC 59.643 57.895 0.00 0.00 38.53 5.80
1563 1660 1.094785 AACATCGATTCAAAGCGGGG 58.905 50.000 0.00 0.00 38.53 5.73
1564 1661 2.477863 GGAAACATCGATTCAAAGCGGG 60.478 50.000 0.00 0.00 38.53 6.13
1565 1662 2.420022 AGGAAACATCGATTCAAAGCGG 59.580 45.455 0.00 0.00 38.53 5.52
1566 1663 3.747099 AGGAAACATCGATTCAAAGCG 57.253 42.857 0.00 0.00 39.51 4.68
1567 1664 5.222631 ACAAAGGAAACATCGATTCAAAGC 58.777 37.500 0.00 0.00 0.00 3.51
1568 1665 8.970691 ATTACAAAGGAAACATCGATTCAAAG 57.029 30.769 0.00 0.00 0.00 2.77
1574 1671 8.345565 GCAGATTATTACAAAGGAAACATCGAT 58.654 33.333 0.00 0.00 0.00 3.59
1575 1672 7.335673 TGCAGATTATTACAAAGGAAACATCGA 59.664 33.333 0.00 0.00 0.00 3.59
1576 1673 7.471721 TGCAGATTATTACAAAGGAAACATCG 58.528 34.615 0.00 0.00 0.00 3.84
1577 1674 9.241317 CATGCAGATTATTACAAAGGAAACATC 57.759 33.333 0.00 0.00 0.00 3.06
1578 1675 7.707893 GCATGCAGATTATTACAAAGGAAACAT 59.292 33.333 14.21 0.00 0.00 2.71
1579 1676 7.035004 GCATGCAGATTATTACAAAGGAAACA 58.965 34.615 14.21 0.00 0.00 2.83
1580 1677 6.197096 CGCATGCAGATTATTACAAAGGAAAC 59.803 38.462 19.57 0.00 0.00 2.78
1581 1678 6.264832 CGCATGCAGATTATTACAAAGGAAA 58.735 36.000 19.57 0.00 0.00 3.13
1582 1679 5.733091 GCGCATGCAGATTATTACAAAGGAA 60.733 40.000 19.57 0.00 42.15 3.36
1583 1680 4.261155 GCGCATGCAGATTATTACAAAGGA 60.261 41.667 19.57 0.00 42.15 3.36
1584 1681 3.976942 GCGCATGCAGATTATTACAAAGG 59.023 43.478 19.57 0.00 42.15 3.11
1585 1682 3.660813 CGCGCATGCAGATTATTACAAAG 59.339 43.478 19.57 0.00 42.97 2.77
1586 1683 3.311048 TCGCGCATGCAGATTATTACAAA 59.689 39.130 19.57 0.00 42.97 2.83
1587 1684 2.869192 TCGCGCATGCAGATTATTACAA 59.131 40.909 19.57 0.00 42.97 2.41
1588 1685 2.478831 TCGCGCATGCAGATTATTACA 58.521 42.857 19.57 0.00 42.97 2.41
1589 1686 3.519908 TTCGCGCATGCAGATTATTAC 57.480 42.857 19.57 0.00 42.97 1.89
1590 1687 3.498018 ACATTCGCGCATGCAGATTATTA 59.502 39.130 18.70 1.37 42.97 0.98
1591 1688 2.291465 ACATTCGCGCATGCAGATTATT 59.709 40.909 18.70 0.00 42.97 1.40
1592 1689 1.875514 ACATTCGCGCATGCAGATTAT 59.124 42.857 18.70 5.13 42.97 1.28
1605 1702 1.468054 GGATTTGGCACTCACATTCGC 60.468 52.381 0.00 0.00 0.00 4.70
1626 1723 3.206150 GAGAGCACACAGGAAGAAACAA 58.794 45.455 0.00 0.00 0.00 2.83
1633 1730 1.837051 ACCGGAGAGCACACAGGAA 60.837 57.895 9.46 0.00 0.00 3.36
1635 1732 2.047844 CACCGGAGAGCACACAGG 60.048 66.667 9.46 0.00 0.00 4.00
1654 1751 2.096909 CACACACGTGCTAAGTGCTAAC 60.097 50.000 17.22 0.00 42.94 2.34
1664 1761 2.253758 GCATGACCACACACGTGCT 61.254 57.895 17.22 0.00 43.15 4.40
1689 1786 0.322546 TCCTACTCACTCAGCAGCGA 60.323 55.000 0.00 0.00 0.00 4.93
1691 1788 1.181786 ACTCCTACTCACTCAGCAGC 58.818 55.000 0.00 0.00 0.00 5.25
1700 1803 2.256306 TGCACATGGAACTCCTACTCA 58.744 47.619 0.00 0.00 36.82 3.41
1728 1831 3.671928 GCATCTTGCATGAGTGACAAAAC 59.328 43.478 8.40 0.00 44.26 2.43
1764 1867 0.981183 ACCTCTGGCCAAATACGTGA 59.019 50.000 7.01 0.00 0.00 4.35
1780 1883 3.230976 GGAAAACAGGGAATTCACACCT 58.769 45.455 11.02 3.06 34.19 4.00
1785 1888 3.556999 TGAACGGAAAACAGGGAATTCA 58.443 40.909 7.93 0.00 0.00 2.57
1790 1893 2.370519 TCAGATGAACGGAAAACAGGGA 59.629 45.455 0.00 0.00 0.00 4.20
1800 1903 2.185004 AAACCCTGTCAGATGAACGG 57.815 50.000 0.00 0.00 0.00 4.44
1838 1941 4.077300 TGGATGCATTAAGTCTAGCTGG 57.923 45.455 0.00 0.00 0.00 4.85
1961 2064 4.837860 TCCTGCAATTTACAATGGGAAAGT 59.162 37.500 0.00 0.00 0.00 2.66
1996 2099 1.155859 ATGGGCCAAGGAAACTGCA 59.844 52.632 11.89 0.00 42.68 4.41
2047 2150 0.975135 CCATCAACCACCATTGCCAA 59.025 50.000 0.00 0.00 0.00 4.52
2284 2387 4.074970 GTCCCAAGGCAATGTATATCAGG 58.925 47.826 0.00 0.00 0.00 3.86
2389 2492 3.741476 GCGTTGAAGGCCAGCTGG 61.741 66.667 29.34 29.34 38.53 4.85
2533 2636 4.608170 ACCCAATACATGATTCCCTTGT 57.392 40.909 0.00 0.00 37.06 3.16
2887 2990 1.271271 GGAATGATGGGCAGAGCTAGG 60.271 57.143 0.00 0.00 0.00 3.02
2896 2999 1.469767 GCGAAAACAGGAATGATGGGC 60.470 52.381 0.00 0.00 0.00 5.36
3099 3202 6.777213 AACTAGTACCTCATTGAGTACCAG 57.223 41.667 12.54 13.59 0.00 4.00
3209 3312 7.072202 AGTTCCCATGATGATACATCTCTTCTT 59.928 37.037 11.98 0.00 0.00 2.52
3210 3313 6.558014 AGTTCCCATGATGATACATCTCTTCT 59.442 38.462 11.98 1.57 0.00 2.85
3211 3314 6.649973 CAGTTCCCATGATGATACATCTCTTC 59.350 42.308 11.98 0.00 0.00 2.87
3234 3337 5.728637 ACTTTTGCCTTCTTATTTCCCAG 57.271 39.130 0.00 0.00 0.00 4.45
3305 3408 8.773033 AGCACATCCAGAATATTTAAGGAAAT 57.227 30.769 8.08 0.00 38.79 2.17
3338 3441 3.458118 ACCAACTAGCCCATTATGCAGTA 59.542 43.478 0.00 0.00 0.00 2.74
3545 3682 7.877003 TGACAACTAGAAACTGAACACAAAAA 58.123 30.769 0.00 0.00 0.00 1.94
3577 3714 4.574828 TGCTTCTTAAACAGTCAACACTCC 59.425 41.667 0.00 0.00 0.00 3.85
3583 3720 6.150307 TGTGTTCTTGCTTCTTAAACAGTCAA 59.850 34.615 0.00 0.00 31.04 3.18
3641 3778 4.141574 GGGTAGCCAATGTTATGGTCTGTA 60.142 45.833 5.96 0.00 42.75 2.74
3770 3911 9.624697 CGGTTTTGTATAAAATCATGGGATATG 57.375 33.333 8.44 0.00 36.84 1.78
3781 3922 8.470805 TGGATGTAATGCGGTTTTGTATAAAAT 58.529 29.630 0.43 0.00 37.56 1.82
3786 3927 5.499139 CTGGATGTAATGCGGTTTTGTAT 57.501 39.130 0.00 0.00 37.56 2.29
3971 4112 8.590204 AGGTTGACCTCTTTTCTTTTAAACAAA 58.410 29.630 0.00 0.00 44.77 2.83
3997 4138 3.839778 TCATACACATATGGACCTCGGA 58.160 45.455 7.80 0.00 39.04 4.55
3998 4139 4.021104 ACATCATACACATATGGACCTCGG 60.021 45.833 7.80 0.00 39.04 4.63
4036 4177 6.351711 CCATAGCCAGGTATTCTGATTCTAGG 60.352 46.154 0.00 0.00 46.18 3.02
4090 4231 0.738975 GCCCTCGAATTACCAAAGGC 59.261 55.000 0.00 0.00 0.00 4.35
4130 4271 7.894934 AAGCACTTCTTGTAAACAGAATGGTTG 60.895 37.037 0.00 0.00 39.31 3.77
4144 4285 2.037772 ACCTCATCGAAGCACTTCTTGT 59.962 45.455 8.65 0.00 37.44 3.16



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.