Multiple sequence alignment - TraesCS6B01G289900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G289900 | chr6B | 100.000 | 4266 | 0 | 0 | 1 | 4266 | 521512740 | 521517005 | 0.000000e+00 | 7878 |
1 | TraesCS6B01G289900 | chr6A | 96.513 | 1950 | 49 | 7 | 1568 | 3506 | 486005741 | 486007682 | 0.000000e+00 | 3206 |
2 | TraesCS6B01G289900 | chr6A | 88.548 | 1109 | 70 | 19 | 483 | 1538 | 486004641 | 486005745 | 0.000000e+00 | 1291 |
3 | TraesCS6B01G289900 | chr6A | 95.132 | 760 | 31 | 3 | 3507 | 4266 | 486007712 | 486008465 | 0.000000e+00 | 1194 |
4 | TraesCS6B01G289900 | chr6A | 82.464 | 211 | 17 | 6 | 1 | 200 | 394638285 | 394638486 | 2.640000e-37 | 167 |
5 | TraesCS6B01G289900 | chr6A | 81.347 | 193 | 23 | 8 | 13 | 193 | 145658760 | 145658569 | 1.240000e-30 | 145 |
6 | TraesCS6B01G289900 | chr6D | 97.806 | 1641 | 27 | 3 | 1871 | 3506 | 345389896 | 345391532 | 0.000000e+00 | 2822 |
7 | TraesCS6B01G289900 | chr6D | 88.294 | 1307 | 97 | 27 | 215 | 1493 | 345388596 | 345389874 | 0.000000e+00 | 1515 |
8 | TraesCS6B01G289900 | chr6D | 91.603 | 786 | 39 | 3 | 3507 | 4266 | 345391562 | 345392346 | 0.000000e+00 | 1061 |
9 | TraesCS6B01G289900 | chr3D | 91.244 | 217 | 13 | 1 | 2168 | 2384 | 32190912 | 32190702 | 1.500000e-74 | 291 |
10 | TraesCS6B01G289900 | chr7B | 86.175 | 217 | 24 | 1 | 2168 | 2384 | 603666891 | 603666681 | 3.320000e-56 | 230 |
11 | TraesCS6B01G289900 | chr7D | 86.385 | 213 | 16 | 5 | 1 | 200 | 98997857 | 98997645 | 2.000000e-53 | 220 |
12 | TraesCS6B01G289900 | chr7D | 81.905 | 210 | 25 | 7 | 303 | 500 | 569501659 | 569501451 | 9.490000e-37 | 165 |
13 | TraesCS6B01G289900 | chr4A | 86.190 | 210 | 17 | 6 | 1 | 200 | 733630370 | 733630577 | 2.580000e-52 | 217 |
14 | TraesCS6B01G289900 | chr4A | 85.981 | 214 | 15 | 6 | 1 | 200 | 620474679 | 620474891 | 9.290000e-52 | 215 |
15 | TraesCS6B01G289900 | chr4A | 83.412 | 211 | 15 | 8 | 1 | 200 | 574771621 | 574771420 | 1.220000e-40 | 178 |
16 | TraesCS6B01G289900 | chr3A | 83.886 | 211 | 14 | 8 | 1 | 200 | 224963184 | 224963385 | 2.620000e-42 | 183 |
17 | TraesCS6B01G289900 | chr2D | 81.900 | 221 | 19 | 8 | 1 | 200 | 119841107 | 119841327 | 2.640000e-37 | 167 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G289900 | chr6B | 521512740 | 521517005 | 4265 | False | 7878.000000 | 7878 | 100.000000 | 1 | 4266 | 1 | chr6B.!!$F1 | 4265 |
1 | TraesCS6B01G289900 | chr6A | 486004641 | 486008465 | 3824 | False | 1897.000000 | 3206 | 93.397667 | 483 | 4266 | 3 | chr6A.!!$F2 | 3783 |
2 | TraesCS6B01G289900 | chr6D | 345388596 | 345392346 | 3750 | False | 1799.333333 | 2822 | 92.567667 | 215 | 4266 | 3 | chr6D.!!$F1 | 4051 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
303 | 309 | 0.253044 | ATTGGCTTCAAGCTCCGCTA | 59.747 | 50.0 | 9.83 | 0.0 | 41.99 | 4.26 | F |
1503 | 1600 | 0.108329 | ATGCTGGCAGTACGGTGTAC | 60.108 | 55.0 | 17.16 | 0.0 | 0.00 | 2.90 | F |
1968 | 2071 | 0.036671 | CCTGTCGGTACCACTTTCCC | 60.037 | 60.0 | 13.54 | 0.0 | 0.00 | 3.97 | F |
2047 | 2150 | 0.676782 | AAAGCGCTCCGGTTAAGCAT | 60.677 | 50.0 | 12.06 | 0.0 | 46.74 | 3.79 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1689 | 1786 | 0.322546 | TCCTACTCACTCAGCAGCGA | 60.323 | 55.000 | 0.0 | 0.0 | 0.0 | 4.93 | R |
2887 | 2990 | 1.271271 | GGAATGATGGGCAGAGCTAGG | 60.271 | 57.143 | 0.0 | 0.0 | 0.0 | 3.02 | R |
2896 | 2999 | 1.469767 | GCGAAAACAGGAATGATGGGC | 60.470 | 52.381 | 0.0 | 0.0 | 0.0 | 5.36 | R |
3338 | 3441 | 3.458118 | ACCAACTAGCCCATTATGCAGTA | 59.542 | 43.478 | 0.0 | 0.0 | 0.0 | 2.74 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
30 | 31 | 8.261522 | AGGAGAGAATAGAGTTTGAAATACACC | 58.738 | 37.037 | 0.00 | 0.00 | 0.00 | 4.16 |
31 | 32 | 8.261522 | GGAGAGAATAGAGTTTGAAATACACCT | 58.738 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
32 | 33 | 9.308318 | GAGAGAATAGAGTTTGAAATACACCTC | 57.692 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
33 | 34 | 8.816894 | AGAGAATAGAGTTTGAAATACACCTCA | 58.183 | 33.333 | 0.00 | 0.00 | 32.45 | 3.86 |
34 | 35 | 9.606631 | GAGAATAGAGTTTGAAATACACCTCAT | 57.393 | 33.333 | 0.00 | 0.00 | 32.45 | 2.90 |
39 | 40 | 8.553459 | AGAGTTTGAAATACACCTCATAACTG | 57.447 | 34.615 | 0.00 | 0.00 | 32.45 | 3.16 |
40 | 41 | 8.375506 | AGAGTTTGAAATACACCTCATAACTGA | 58.624 | 33.333 | 0.00 | 0.00 | 32.45 | 3.41 |
41 | 42 | 8.918202 | AGTTTGAAATACACCTCATAACTGAA | 57.082 | 30.769 | 0.00 | 0.00 | 29.63 | 3.02 |
42 | 43 | 9.349713 | AGTTTGAAATACACCTCATAACTGAAA | 57.650 | 29.630 | 0.00 | 0.00 | 29.63 | 2.69 |
43 | 44 | 9.612620 | GTTTGAAATACACCTCATAACTGAAAG | 57.387 | 33.333 | 0.00 | 0.00 | 42.29 | 2.62 |
44 | 45 | 9.567776 | TTTGAAATACACCTCATAACTGAAAGA | 57.432 | 29.630 | 0.00 | 0.00 | 37.43 | 2.52 |
45 | 46 | 8.547967 | TGAAATACACCTCATAACTGAAAGAC | 57.452 | 34.615 | 0.00 | 0.00 | 37.43 | 3.01 |
46 | 47 | 8.154203 | TGAAATACACCTCATAACTGAAAGACA | 58.846 | 33.333 | 0.00 | 0.00 | 37.43 | 3.41 |
47 | 48 | 8.918202 | AAATACACCTCATAACTGAAAGACAA | 57.082 | 30.769 | 0.00 | 0.00 | 37.43 | 3.18 |
48 | 49 | 8.918202 | AATACACCTCATAACTGAAAGACAAA | 57.082 | 30.769 | 0.00 | 0.00 | 37.43 | 2.83 |
49 | 50 | 8.918202 | ATACACCTCATAACTGAAAGACAAAA | 57.082 | 30.769 | 0.00 | 0.00 | 37.43 | 2.44 |
50 | 51 | 7.264373 | ACACCTCATAACTGAAAGACAAAAG | 57.736 | 36.000 | 0.00 | 0.00 | 37.43 | 2.27 |
51 | 52 | 7.054124 | ACACCTCATAACTGAAAGACAAAAGA | 58.946 | 34.615 | 0.00 | 0.00 | 37.43 | 2.52 |
52 | 53 | 7.227512 | ACACCTCATAACTGAAAGACAAAAGAG | 59.772 | 37.037 | 0.00 | 0.00 | 37.43 | 2.85 |
53 | 54 | 7.227512 | CACCTCATAACTGAAAGACAAAAGAGT | 59.772 | 37.037 | 0.00 | 0.00 | 37.43 | 3.24 |
54 | 55 | 7.227512 | ACCTCATAACTGAAAGACAAAAGAGTG | 59.772 | 37.037 | 0.00 | 0.00 | 37.43 | 3.51 |
55 | 56 | 7.227512 | CCTCATAACTGAAAGACAAAAGAGTGT | 59.772 | 37.037 | 0.00 | 0.00 | 37.43 | 3.55 |
56 | 57 | 8.506168 | TCATAACTGAAAGACAAAAGAGTGTT | 57.494 | 30.769 | 0.00 | 0.00 | 37.43 | 3.32 |
57 | 58 | 9.607988 | TCATAACTGAAAGACAAAAGAGTGTTA | 57.392 | 29.630 | 0.00 | 0.00 | 37.43 | 2.41 |
58 | 59 | 9.651718 | CATAACTGAAAGACAAAAGAGTGTTAC | 57.348 | 33.333 | 0.00 | 0.00 | 37.43 | 2.50 |
59 | 60 | 7.923414 | AACTGAAAGACAAAAGAGTGTTACT | 57.077 | 32.000 | 0.00 | 0.00 | 37.43 | 2.24 |
60 | 61 | 7.541122 | ACTGAAAGACAAAAGAGTGTTACTC | 57.459 | 36.000 | 0.79 | 0.79 | 40.94 | 2.59 |
62 | 63 | 7.492994 | ACTGAAAGACAAAAGAGTGTTACTCTC | 59.507 | 37.037 | 11.52 | 6.34 | 46.53 | 3.20 |
63 | 64 | 7.042389 | CTGAAAGACAAAAGAGTGTTACTCTCC | 60.042 | 40.741 | 11.52 | 1.17 | 46.70 | 3.71 |
73 | 74 | 5.837437 | GAGTGTTACTCTCCCAGTATGATG | 58.163 | 45.833 | 3.30 | 0.00 | 41.88 | 3.07 |
74 | 75 | 5.273208 | AGTGTTACTCTCCCAGTATGATGT | 58.727 | 41.667 | 0.00 | 0.00 | 39.69 | 3.06 |
75 | 76 | 5.721960 | AGTGTTACTCTCCCAGTATGATGTT | 59.278 | 40.000 | 0.00 | 0.00 | 39.69 | 2.71 |
76 | 77 | 5.812642 | GTGTTACTCTCCCAGTATGATGTTG | 59.187 | 44.000 | 0.00 | 0.00 | 39.69 | 3.33 |
77 | 78 | 3.550437 | ACTCTCCCAGTATGATGTTGC | 57.450 | 47.619 | 0.00 | 0.00 | 39.69 | 4.17 |
78 | 79 | 2.171448 | ACTCTCCCAGTATGATGTTGCC | 59.829 | 50.000 | 0.00 | 0.00 | 39.69 | 4.52 |
79 | 80 | 1.490490 | TCTCCCAGTATGATGTTGCCC | 59.510 | 52.381 | 0.00 | 0.00 | 39.69 | 5.36 |
80 | 81 | 1.212688 | CTCCCAGTATGATGTTGCCCA | 59.787 | 52.381 | 0.00 | 0.00 | 39.69 | 5.36 |
81 | 82 | 1.638070 | TCCCAGTATGATGTTGCCCAA | 59.362 | 47.619 | 0.00 | 0.00 | 39.69 | 4.12 |
82 | 83 | 2.244510 | TCCCAGTATGATGTTGCCCAAT | 59.755 | 45.455 | 0.00 | 0.00 | 39.69 | 3.16 |
83 | 84 | 3.033184 | CCCAGTATGATGTTGCCCAATT | 58.967 | 45.455 | 0.00 | 0.00 | 39.69 | 2.32 |
84 | 85 | 3.451902 | CCCAGTATGATGTTGCCCAATTT | 59.548 | 43.478 | 0.00 | 0.00 | 39.69 | 1.82 |
85 | 86 | 4.441913 | CCCAGTATGATGTTGCCCAATTTC | 60.442 | 45.833 | 0.00 | 0.00 | 39.69 | 2.17 |
86 | 87 | 4.403432 | CCAGTATGATGTTGCCCAATTTCT | 59.597 | 41.667 | 0.00 | 0.00 | 39.69 | 2.52 |
87 | 88 | 5.105228 | CCAGTATGATGTTGCCCAATTTCTT | 60.105 | 40.000 | 0.00 | 0.00 | 39.69 | 2.52 |
88 | 89 | 6.038356 | CAGTATGATGTTGCCCAATTTCTTC | 58.962 | 40.000 | 0.00 | 0.00 | 39.69 | 2.87 |
89 | 90 | 3.574284 | TGATGTTGCCCAATTTCTTCG | 57.426 | 42.857 | 0.00 | 0.00 | 0.00 | 3.79 |
90 | 91 | 2.262211 | GATGTTGCCCAATTTCTTCGC | 58.738 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
91 | 92 | 0.316841 | TGTTGCCCAATTTCTTCGCC | 59.683 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
92 | 93 | 0.389817 | GTTGCCCAATTTCTTCGCCC | 60.390 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
93 | 94 | 1.540435 | TTGCCCAATTTCTTCGCCCC | 61.540 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
94 | 95 | 2.721167 | GCCCAATTTCTTCGCCCCC | 61.721 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
95 | 96 | 1.304879 | CCCAATTTCTTCGCCCCCA | 60.305 | 57.895 | 0.00 | 0.00 | 0.00 | 4.96 |
96 | 97 | 0.902516 | CCCAATTTCTTCGCCCCCAA | 60.903 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
97 | 98 | 0.972883 | CCAATTTCTTCGCCCCCAAA | 59.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
98 | 99 | 1.346068 | CCAATTTCTTCGCCCCCAAAA | 59.654 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
99 | 100 | 2.612721 | CCAATTTCTTCGCCCCCAAAAG | 60.613 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
100 | 101 | 2.298729 | CAATTTCTTCGCCCCCAAAAGA | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
101 | 102 | 2.302587 | TTTCTTCGCCCCCAAAAGAT | 57.697 | 45.000 | 0.00 | 0.00 | 0.00 | 2.40 |
102 | 103 | 1.544724 | TTCTTCGCCCCCAAAAGATG | 58.455 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
115 | 116 | 5.772825 | CCAAAAGATGGTTTCACTCTTGA | 57.227 | 39.130 | 0.00 | 0.00 | 44.85 | 3.02 |
116 | 117 | 6.336842 | CCAAAAGATGGTTTCACTCTTGAT | 57.663 | 37.500 | 0.00 | 0.00 | 44.85 | 2.57 |
117 | 118 | 6.154445 | CCAAAAGATGGTTTCACTCTTGATG | 58.846 | 40.000 | 0.00 | 0.00 | 44.85 | 3.07 |
118 | 119 | 6.239120 | CCAAAAGATGGTTTCACTCTTGATGT | 60.239 | 38.462 | 0.00 | 0.00 | 44.85 | 3.06 |
119 | 120 | 6.966534 | AAAGATGGTTTCACTCTTGATGTT | 57.033 | 33.333 | 0.00 | 0.00 | 29.96 | 2.71 |
120 | 121 | 5.954296 | AGATGGTTTCACTCTTGATGTTG | 57.046 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
121 | 122 | 5.380043 | AGATGGTTTCACTCTTGATGTTGT | 58.620 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
122 | 123 | 5.829924 | AGATGGTTTCACTCTTGATGTTGTT | 59.170 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
123 | 124 | 5.247507 | TGGTTTCACTCTTGATGTTGTTG | 57.752 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
124 | 125 | 4.946772 | TGGTTTCACTCTTGATGTTGTTGA | 59.053 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
125 | 126 | 5.066375 | TGGTTTCACTCTTGATGTTGTTGAG | 59.934 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
126 | 127 | 4.818534 | TTCACTCTTGATGTTGTTGAGC | 57.181 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
127 | 128 | 3.807553 | TCACTCTTGATGTTGTTGAGCA | 58.192 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
128 | 129 | 4.198530 | TCACTCTTGATGTTGTTGAGCAA | 58.801 | 39.130 | 0.00 | 0.00 | 34.16 | 3.91 |
129 | 130 | 4.639755 | TCACTCTTGATGTTGTTGAGCAAA | 59.360 | 37.500 | 0.00 | 0.00 | 39.03 | 3.68 |
130 | 131 | 5.125257 | TCACTCTTGATGTTGTTGAGCAAAA | 59.875 | 36.000 | 0.00 | 0.00 | 39.03 | 2.44 |
131 | 132 | 5.230726 | CACTCTTGATGTTGTTGAGCAAAAC | 59.769 | 40.000 | 0.00 | 0.00 | 39.03 | 2.43 |
132 | 133 | 4.681744 | TCTTGATGTTGTTGAGCAAAACC | 58.318 | 39.130 | 0.00 | 0.00 | 39.03 | 3.27 |
133 | 134 | 3.077229 | TGATGTTGTTGAGCAAAACCG | 57.923 | 42.857 | 0.00 | 0.00 | 39.03 | 4.44 |
134 | 135 | 2.425312 | TGATGTTGTTGAGCAAAACCGT | 59.575 | 40.909 | 0.00 | 0.00 | 39.03 | 4.83 |
135 | 136 | 3.119316 | TGATGTTGTTGAGCAAAACCGTT | 60.119 | 39.130 | 0.00 | 0.00 | 39.03 | 4.44 |
136 | 137 | 2.600731 | TGTTGTTGAGCAAAACCGTTG | 58.399 | 42.857 | 0.00 | 0.00 | 39.03 | 4.10 |
137 | 138 | 1.923864 | GTTGTTGAGCAAAACCGTTGG | 59.076 | 47.619 | 0.00 | 0.00 | 39.03 | 3.77 |
138 | 139 | 1.464734 | TGTTGAGCAAAACCGTTGGA | 58.535 | 45.000 | 0.00 | 0.00 | 0.00 | 3.53 |
139 | 140 | 1.403679 | TGTTGAGCAAAACCGTTGGAG | 59.596 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
140 | 141 | 1.028905 | TTGAGCAAAACCGTTGGAGG | 58.971 | 50.000 | 0.00 | 0.00 | 37.30 | 4.30 |
141 | 142 | 1.285950 | GAGCAAAACCGTTGGAGGC | 59.714 | 57.895 | 0.00 | 0.00 | 33.69 | 4.70 |
142 | 143 | 1.452145 | GAGCAAAACCGTTGGAGGCA | 61.452 | 55.000 | 0.00 | 0.00 | 33.69 | 4.75 |
143 | 144 | 0.827507 | AGCAAAACCGTTGGAGGCAT | 60.828 | 50.000 | 0.00 | 0.00 | 33.69 | 4.40 |
144 | 145 | 0.667184 | GCAAAACCGTTGGAGGCATG | 60.667 | 55.000 | 0.00 | 0.00 | 33.69 | 4.06 |
145 | 146 | 0.667184 | CAAAACCGTTGGAGGCATGC | 60.667 | 55.000 | 9.90 | 9.90 | 33.69 | 4.06 |
146 | 147 | 0.827507 | AAAACCGTTGGAGGCATGCT | 60.828 | 50.000 | 18.92 | 3.20 | 33.69 | 3.79 |
147 | 148 | 1.244019 | AAACCGTTGGAGGCATGCTC | 61.244 | 55.000 | 18.92 | 12.66 | 33.69 | 4.26 |
148 | 149 | 2.129555 | AACCGTTGGAGGCATGCTCT | 62.130 | 55.000 | 18.92 | 13.04 | 33.69 | 4.09 |
149 | 150 | 1.377725 | CCGTTGGAGGCATGCTCTT | 60.378 | 57.895 | 18.92 | 3.44 | 0.00 | 2.85 |
150 | 151 | 0.962356 | CCGTTGGAGGCATGCTCTTT | 60.962 | 55.000 | 18.92 | 0.65 | 0.00 | 2.52 |
151 | 152 | 0.883833 | CGTTGGAGGCATGCTCTTTT | 59.116 | 50.000 | 18.92 | 0.00 | 0.00 | 2.27 |
152 | 153 | 1.401931 | CGTTGGAGGCATGCTCTTTTG | 60.402 | 52.381 | 18.92 | 0.00 | 0.00 | 2.44 |
153 | 154 | 1.615392 | GTTGGAGGCATGCTCTTTTGT | 59.385 | 47.619 | 18.92 | 0.00 | 0.00 | 2.83 |
154 | 155 | 1.538047 | TGGAGGCATGCTCTTTTGTC | 58.462 | 50.000 | 18.92 | 0.00 | 0.00 | 3.18 |
155 | 156 | 0.449388 | GGAGGCATGCTCTTTTGTCG | 59.551 | 55.000 | 18.92 | 0.00 | 0.00 | 4.35 |
156 | 157 | 1.442769 | GAGGCATGCTCTTTTGTCGA | 58.557 | 50.000 | 18.92 | 0.00 | 0.00 | 4.20 |
157 | 158 | 1.806542 | GAGGCATGCTCTTTTGTCGAA | 59.193 | 47.619 | 18.92 | 0.00 | 0.00 | 3.71 |
158 | 159 | 2.226437 | GAGGCATGCTCTTTTGTCGAAA | 59.774 | 45.455 | 18.92 | 0.00 | 0.00 | 3.46 |
159 | 160 | 2.622942 | AGGCATGCTCTTTTGTCGAAAA | 59.377 | 40.909 | 18.92 | 0.00 | 0.00 | 2.29 |
160 | 161 | 3.068024 | AGGCATGCTCTTTTGTCGAAAAA | 59.932 | 39.130 | 18.92 | 0.00 | 30.58 | 1.94 |
161 | 162 | 3.989817 | GGCATGCTCTTTTGTCGAAAAAT | 59.010 | 39.130 | 18.92 | 0.00 | 30.58 | 1.82 |
162 | 163 | 4.090498 | GGCATGCTCTTTTGTCGAAAAATC | 59.910 | 41.667 | 18.92 | 0.00 | 30.58 | 2.17 |
163 | 164 | 4.090498 | GCATGCTCTTTTGTCGAAAAATCC | 59.910 | 41.667 | 11.37 | 0.00 | 30.58 | 3.01 |
164 | 165 | 3.884169 | TGCTCTTTTGTCGAAAAATCCG | 58.116 | 40.909 | 0.61 | 0.00 | 30.58 | 4.18 |
165 | 166 | 3.234386 | GCTCTTTTGTCGAAAAATCCGG | 58.766 | 45.455 | 0.61 | 0.00 | 30.58 | 5.14 |
166 | 167 | 3.821841 | CTCTTTTGTCGAAAAATCCGGG | 58.178 | 45.455 | 0.00 | 0.00 | 30.58 | 5.73 |
167 | 168 | 2.030628 | TCTTTTGTCGAAAAATCCGGGC | 60.031 | 45.455 | 0.00 | 0.00 | 30.58 | 6.13 |
168 | 169 | 1.319541 | TTTGTCGAAAAATCCGGGCA | 58.680 | 45.000 | 0.00 | 0.00 | 0.00 | 5.36 |
169 | 170 | 1.540267 | TTGTCGAAAAATCCGGGCAT | 58.460 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
170 | 171 | 1.540267 | TGTCGAAAAATCCGGGCATT | 58.460 | 45.000 | 0.00 | 0.00 | 0.00 | 3.56 |
171 | 172 | 1.470890 | TGTCGAAAAATCCGGGCATTC | 59.529 | 47.619 | 0.00 | 0.74 | 0.00 | 2.67 |
172 | 173 | 1.099689 | TCGAAAAATCCGGGCATTCC | 58.900 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
181 | 182 | 3.184206 | GGGCATTCCGTTCGTTCC | 58.816 | 61.111 | 0.00 | 0.00 | 0.00 | 3.62 |
182 | 183 | 1.673009 | GGGCATTCCGTTCGTTCCA | 60.673 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
183 | 184 | 1.238625 | GGGCATTCCGTTCGTTCCAA | 61.239 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
184 | 185 | 0.594110 | GGCATTCCGTTCGTTCCAAA | 59.406 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
185 | 186 | 1.201414 | GGCATTCCGTTCGTTCCAAAT | 59.799 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
186 | 187 | 2.250188 | GCATTCCGTTCGTTCCAAATG | 58.750 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
187 | 188 | 2.862512 | CATTCCGTTCGTTCCAAATGG | 58.137 | 47.619 | 0.00 | 0.00 | 34.64 | 3.16 |
188 | 189 | 1.970092 | TTCCGTTCGTTCCAAATGGT | 58.030 | 45.000 | 0.00 | 0.00 | 34.87 | 3.55 |
189 | 190 | 1.515081 | TCCGTTCGTTCCAAATGGTC | 58.485 | 50.000 | 0.00 | 0.00 | 34.87 | 4.02 |
190 | 191 | 0.519961 | CCGTTCGTTCCAAATGGTCC | 59.480 | 55.000 | 0.00 | 0.00 | 36.34 | 4.46 |
191 | 192 | 1.231221 | CGTTCGTTCCAAATGGTCCA | 58.769 | 50.000 | 0.00 | 0.00 | 36.34 | 4.02 |
192 | 193 | 1.810151 | CGTTCGTTCCAAATGGTCCAT | 59.190 | 47.619 | 0.00 | 0.00 | 36.34 | 3.41 |
193 | 194 | 2.227865 | CGTTCGTTCCAAATGGTCCATT | 59.772 | 45.455 | 11.59 | 11.59 | 35.39 | 3.16 |
194 | 195 | 3.669557 | CGTTCGTTCCAAATGGTCCATTC | 60.670 | 47.826 | 17.60 | 4.03 | 32.43 | 2.67 |
195 | 196 | 3.433306 | TCGTTCCAAATGGTCCATTCT | 57.567 | 42.857 | 17.60 | 5.63 | 32.43 | 2.40 |
196 | 197 | 4.561500 | TCGTTCCAAATGGTCCATTCTA | 57.438 | 40.909 | 17.60 | 3.72 | 32.43 | 2.10 |
197 | 198 | 4.912586 | TCGTTCCAAATGGTCCATTCTAA | 58.087 | 39.130 | 17.60 | 9.35 | 32.43 | 2.10 |
198 | 199 | 5.505780 | TCGTTCCAAATGGTCCATTCTAAT | 58.494 | 37.500 | 17.60 | 0.00 | 32.43 | 1.73 |
199 | 200 | 6.654959 | TCGTTCCAAATGGTCCATTCTAATA | 58.345 | 36.000 | 17.60 | 0.58 | 32.43 | 0.98 |
200 | 201 | 7.287061 | TCGTTCCAAATGGTCCATTCTAATAT | 58.713 | 34.615 | 17.60 | 0.00 | 32.43 | 1.28 |
201 | 202 | 7.777910 | TCGTTCCAAATGGTCCATTCTAATATT | 59.222 | 33.333 | 17.60 | 0.00 | 32.43 | 1.28 |
202 | 203 | 8.413229 | CGTTCCAAATGGTCCATTCTAATATTT | 58.587 | 33.333 | 17.60 | 0.00 | 32.43 | 1.40 |
244 | 250 | 4.758674 | CCATCCTAATAGCATGAACACCAG | 59.241 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
247 | 253 | 2.814805 | AATAGCATGAACACCAGCCT | 57.185 | 45.000 | 0.00 | 0.00 | 0.00 | 4.58 |
249 | 255 | 4.443978 | AATAGCATGAACACCAGCCTAT | 57.556 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
251 | 257 | 3.931907 | AGCATGAACACCAGCCTATAA | 57.068 | 42.857 | 0.00 | 0.00 | 0.00 | 0.98 |
260 | 266 | 6.889722 | TGAACACCAGCCTATAAGCTATTTTT | 59.110 | 34.615 | 0.00 | 0.00 | 42.61 | 1.94 |
261 | 267 | 6.699575 | ACACCAGCCTATAAGCTATTTTTG | 57.300 | 37.500 | 0.00 | 0.00 | 42.61 | 2.44 |
262 | 268 | 6.187682 | ACACCAGCCTATAAGCTATTTTTGT | 58.812 | 36.000 | 0.00 | 0.00 | 42.61 | 2.83 |
274 | 280 | 6.130298 | AGCTATTTTTGTTTTGTTTTGGCC | 57.870 | 33.333 | 0.00 | 0.00 | 0.00 | 5.36 |
300 | 306 | 0.883833 | ACAATTGGCTTCAAGCTCCG | 59.116 | 50.000 | 9.83 | 0.00 | 41.99 | 4.63 |
301 | 307 | 0.457337 | CAATTGGCTTCAAGCTCCGC | 60.457 | 55.000 | 9.83 | 0.00 | 41.99 | 5.54 |
302 | 308 | 0.610232 | AATTGGCTTCAAGCTCCGCT | 60.610 | 50.000 | 9.83 | 0.00 | 41.99 | 5.52 |
303 | 309 | 0.253044 | ATTGGCTTCAAGCTCCGCTA | 59.747 | 50.000 | 9.83 | 0.00 | 41.99 | 4.26 |
327 | 333 | 1.962321 | TAGCGCGTCCCTTTATGGCA | 61.962 | 55.000 | 8.43 | 0.00 | 0.00 | 4.92 |
331 | 337 | 1.219664 | CGTCCCTTTATGGCACGGA | 59.780 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
332 | 338 | 0.810031 | CGTCCCTTTATGGCACGGAG | 60.810 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
341 | 347 | 5.530915 | CCTTTATGGCACGGAGATTAATGAA | 59.469 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
350 | 356 | 7.226720 | GGCACGGAGATTAATGAAATTAGAGAA | 59.773 | 37.037 | 0.00 | 0.00 | 40.40 | 2.87 |
400 | 406 | 7.672983 | TCATTAGTCATGAGTTTTGAACCTC | 57.327 | 36.000 | 8.68 | 0.00 | 36.94 | 3.85 |
405 | 411 | 9.567776 | TTAGTCATGAGTTTTGAACCTCAAATA | 57.432 | 29.630 | 8.68 | 0.00 | 44.75 | 1.40 |
422 | 428 | 6.140303 | TCAAATATTGAGGCTTGCAATCTC | 57.860 | 37.500 | 17.84 | 17.84 | 37.22 | 2.75 |
423 | 429 | 5.653330 | TCAAATATTGAGGCTTGCAATCTCA | 59.347 | 36.000 | 21.41 | 21.41 | 37.22 | 3.27 |
428 | 434 | 2.294233 | TGAGGCTTGCAATCTCACAAAC | 59.706 | 45.455 | 21.41 | 3.90 | 33.21 | 2.93 |
436 | 442 | 3.384146 | TGCAATCTCACAAACACATGGTT | 59.616 | 39.130 | 0.00 | 0.00 | 42.98 | 3.67 |
472 | 478 | 2.640989 | GCGACCAACCCGAAAACC | 59.359 | 61.111 | 0.00 | 0.00 | 0.00 | 3.27 |
481 | 487 | 4.650131 | ACCAACCCGAAAACCTTATTTTCA | 59.350 | 37.500 | 11.50 | 0.00 | 38.07 | 2.69 |
600 | 611 | 1.066573 | CGACCAGGACTGCAGAGAATT | 60.067 | 52.381 | 23.35 | 0.00 | 0.00 | 2.17 |
603 | 614 | 4.681781 | CGACCAGGACTGCAGAGAATTTAT | 60.682 | 45.833 | 23.35 | 0.00 | 0.00 | 1.40 |
604 | 615 | 5.451937 | CGACCAGGACTGCAGAGAATTTATA | 60.452 | 44.000 | 23.35 | 0.00 | 0.00 | 0.98 |
647 | 658 | 3.049674 | CCCATCGCTGTTGCACGT | 61.050 | 61.111 | 0.00 | 0.00 | 39.64 | 4.49 |
679 | 690 | 4.455877 | AGGACATCAAAACATCTTTCGTCC | 59.544 | 41.667 | 0.00 | 0.00 | 40.55 | 4.79 |
744 | 760 | 2.288961 | TCGGGAGAATTACGCAACTC | 57.711 | 50.000 | 0.00 | 0.00 | 34.75 | 3.01 |
745 | 761 | 1.822990 | TCGGGAGAATTACGCAACTCT | 59.177 | 47.619 | 0.00 | 0.00 | 34.75 | 3.24 |
748 | 764 | 2.603560 | GGGAGAATTACGCAACTCTTCG | 59.396 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
775 | 799 | 4.453480 | TTTCTTTGGTCAATCCTGGAGT | 57.547 | 40.909 | 1.52 | 0.00 | 37.07 | 3.85 |
867 | 891 | 4.081030 | CCGATGCGATGCGATGCC | 62.081 | 66.667 | 0.00 | 0.00 | 0.00 | 4.40 |
868 | 892 | 4.081030 | CGATGCGATGCGATGCCC | 62.081 | 66.667 | 0.00 | 0.00 | 0.00 | 5.36 |
869 | 893 | 2.974148 | GATGCGATGCGATGCCCA | 60.974 | 61.111 | 0.00 | 0.00 | 0.00 | 5.36 |
914 | 938 | 1.880894 | CGGCTAGTCTTCCGTCACA | 59.119 | 57.895 | 0.00 | 0.00 | 40.72 | 3.58 |
915 | 939 | 0.456312 | CGGCTAGTCTTCCGTCACAC | 60.456 | 60.000 | 0.00 | 0.00 | 40.72 | 3.82 |
917 | 941 | 0.520404 | GCTAGTCTTCCGTCACACGA | 59.480 | 55.000 | 0.00 | 0.00 | 46.05 | 4.35 |
1035 | 1073 | 0.588252 | CACAGTGCCTCTTTTCCACG | 59.412 | 55.000 | 0.00 | 0.00 | 34.79 | 4.94 |
1319 | 1400 | 3.991367 | GGATACGTGGAAACCCTGATAG | 58.009 | 50.000 | 0.00 | 0.00 | 0.00 | 2.08 |
1324 | 1405 | 3.028850 | CGTGGAAACCCTGATAGGTAGA | 58.971 | 50.000 | 0.00 | 0.00 | 40.05 | 2.59 |
1335 | 1416 | 4.407296 | CCTGATAGGTAGAAGCTCACCTTT | 59.593 | 45.833 | 17.08 | 11.05 | 42.68 | 3.11 |
1336 | 1417 | 5.344743 | TGATAGGTAGAAGCTCACCTTTG | 57.655 | 43.478 | 17.08 | 0.00 | 42.68 | 2.77 |
1350 | 1431 | 0.948623 | CCTTTGTGATGTGGTCGCGA | 60.949 | 55.000 | 3.71 | 3.71 | 40.28 | 5.87 |
1357 | 1442 | 1.403972 | GATGTGGTCGCGACGTCTTC | 61.404 | 60.000 | 30.99 | 25.40 | 0.00 | 2.87 |
1401 | 1494 | 7.414540 | CCCATAGACAAAACTGCTGTTTATCTC | 60.415 | 40.741 | 25.90 | 18.33 | 44.70 | 2.75 |
1413 | 1506 | 4.092771 | TGTTTATCTCAGTTCGTCTCCG | 57.907 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
1422 | 1515 | 3.760151 | TCAGTTCGTCTCCGAGGAATTTA | 59.240 | 43.478 | 0.00 | 0.00 | 45.24 | 1.40 |
1435 | 1532 | 1.471287 | GGAATTTAGTGGTCCGTTGGC | 59.529 | 52.381 | 0.00 | 0.00 | 0.00 | 4.52 |
1486 | 1583 | 2.607180 | TCGATGAATTGTGTACGGCATG | 59.393 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
1487 | 1584 | 2.719798 | GATGAATTGTGTACGGCATGC | 58.280 | 47.619 | 9.90 | 9.90 | 0.00 | 4.06 |
1496 | 1593 | 1.153449 | TACGGCATGCTGGCAGTAC | 60.153 | 57.895 | 29.43 | 3.83 | 43.94 | 2.73 |
1498 | 1595 | 3.204827 | GGCATGCTGGCAGTACGG | 61.205 | 66.667 | 18.92 | 8.95 | 43.14 | 4.02 |
1499 | 1596 | 2.436646 | GCATGCTGGCAGTACGGT | 60.437 | 61.111 | 17.16 | 0.00 | 0.00 | 4.83 |
1503 | 1600 | 0.108329 | ATGCTGGCAGTACGGTGTAC | 60.108 | 55.000 | 17.16 | 0.00 | 0.00 | 2.90 |
1524 | 1621 | 4.501071 | ACCGAGTTTATTTACGAGCATGT | 58.499 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
1526 | 1623 | 4.565166 | CCGAGTTTATTTACGAGCATGTCA | 59.435 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
1538 | 1635 | 3.189287 | CGAGCATGTCAAACTAGGCTTTT | 59.811 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
1539 | 1636 | 4.670221 | CGAGCATGTCAAACTAGGCTTTTC | 60.670 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
1540 | 1637 | 3.507622 | AGCATGTCAAACTAGGCTTTTCC | 59.492 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
1541 | 1638 | 3.255642 | GCATGTCAAACTAGGCTTTTCCA | 59.744 | 43.478 | 0.00 | 0.00 | 37.29 | 3.53 |
1542 | 1639 | 4.261994 | GCATGTCAAACTAGGCTTTTCCAA | 60.262 | 41.667 | 0.00 | 0.00 | 37.29 | 3.53 |
1543 | 1640 | 4.911514 | TGTCAAACTAGGCTTTTCCAAC | 57.088 | 40.909 | 0.00 | 0.00 | 37.29 | 3.77 |
1544 | 1641 | 3.634910 | TGTCAAACTAGGCTTTTCCAACC | 59.365 | 43.478 | 0.00 | 0.00 | 37.29 | 3.77 |
1545 | 1642 | 2.882137 | TCAAACTAGGCTTTTCCAACCG | 59.118 | 45.455 | 0.00 | 0.00 | 37.29 | 4.44 |
1546 | 1643 | 2.882137 | CAAACTAGGCTTTTCCAACCGA | 59.118 | 45.455 | 0.00 | 0.00 | 37.29 | 4.69 |
1547 | 1644 | 2.943036 | ACTAGGCTTTTCCAACCGAA | 57.057 | 45.000 | 0.00 | 0.00 | 37.29 | 4.30 |
1548 | 1645 | 3.217681 | ACTAGGCTTTTCCAACCGAAA | 57.782 | 42.857 | 0.00 | 0.00 | 38.74 | 3.46 |
1549 | 1646 | 3.558033 | ACTAGGCTTTTCCAACCGAAAA | 58.442 | 40.909 | 0.00 | 0.00 | 46.01 | 2.29 |
1558 | 1655 | 6.713792 | TTTTCCAACCGAAAAAGTCTTTTG | 57.286 | 33.333 | 11.30 | 2.26 | 45.38 | 2.44 |
1559 | 1656 | 3.776340 | TCCAACCGAAAAAGTCTTTTGC | 58.224 | 40.909 | 11.30 | 8.58 | 34.83 | 3.68 |
1560 | 1657 | 2.863740 | CCAACCGAAAAAGTCTTTTGCC | 59.136 | 45.455 | 11.30 | 6.09 | 34.83 | 4.52 |
1561 | 1658 | 3.430236 | CCAACCGAAAAAGTCTTTTGCCT | 60.430 | 43.478 | 11.30 | 0.00 | 34.83 | 4.75 |
1562 | 1659 | 3.436700 | ACCGAAAAAGTCTTTTGCCTG | 57.563 | 42.857 | 11.30 | 5.23 | 34.83 | 4.85 |
1563 | 1660 | 2.127251 | CCGAAAAAGTCTTTTGCCTGC | 58.873 | 47.619 | 11.30 | 0.00 | 34.83 | 4.85 |
1564 | 1661 | 2.127251 | CGAAAAAGTCTTTTGCCTGCC | 58.873 | 47.619 | 11.30 | 0.00 | 34.83 | 4.85 |
1565 | 1662 | 2.483876 | GAAAAAGTCTTTTGCCTGCCC | 58.516 | 47.619 | 11.30 | 0.00 | 34.83 | 5.36 |
1566 | 1663 | 0.758734 | AAAAGTCTTTTGCCTGCCCC | 59.241 | 50.000 | 9.80 | 0.00 | 0.00 | 5.80 |
1567 | 1664 | 1.463553 | AAAGTCTTTTGCCTGCCCCG | 61.464 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
1568 | 1665 | 4.056125 | GTCTTTTGCCTGCCCCGC | 62.056 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1569 | 1666 | 4.284550 | TCTTTTGCCTGCCCCGCT | 62.285 | 61.111 | 0.00 | 0.00 | 0.00 | 5.52 |
1570 | 1667 | 3.305516 | CTTTTGCCTGCCCCGCTT | 61.306 | 61.111 | 0.00 | 0.00 | 0.00 | 4.68 |
1571 | 1668 | 2.841988 | TTTTGCCTGCCCCGCTTT | 60.842 | 55.556 | 0.00 | 0.00 | 0.00 | 3.51 |
1572 | 1669 | 3.162505 | TTTTGCCTGCCCCGCTTTG | 62.163 | 57.895 | 0.00 | 0.00 | 0.00 | 2.77 |
1573 | 1670 | 4.594854 | TTGCCTGCCCCGCTTTGA | 62.595 | 61.111 | 0.00 | 0.00 | 0.00 | 2.69 |
1574 | 1671 | 4.594854 | TGCCTGCCCCGCTTTGAA | 62.595 | 61.111 | 0.00 | 0.00 | 0.00 | 2.69 |
1575 | 1672 | 3.070576 | GCCTGCCCCGCTTTGAAT | 61.071 | 61.111 | 0.00 | 0.00 | 0.00 | 2.57 |
1576 | 1673 | 3.068729 | GCCTGCCCCGCTTTGAATC | 62.069 | 63.158 | 0.00 | 0.00 | 0.00 | 2.52 |
1577 | 1674 | 2.764314 | CCTGCCCCGCTTTGAATCG | 61.764 | 63.158 | 0.00 | 0.00 | 0.00 | 3.34 |
1578 | 1675 | 1.745115 | CTGCCCCGCTTTGAATCGA | 60.745 | 57.895 | 0.00 | 0.00 | 0.00 | 3.59 |
1579 | 1676 | 1.077787 | TGCCCCGCTTTGAATCGAT | 60.078 | 52.632 | 0.00 | 0.00 | 0.00 | 3.59 |
1580 | 1677 | 1.356624 | GCCCCGCTTTGAATCGATG | 59.643 | 57.895 | 0.00 | 0.00 | 0.00 | 3.84 |
1581 | 1678 | 1.376609 | GCCCCGCTTTGAATCGATGT | 61.377 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1582 | 1679 | 1.094785 | CCCCGCTTTGAATCGATGTT | 58.905 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1583 | 1680 | 1.472480 | CCCCGCTTTGAATCGATGTTT | 59.528 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
1584 | 1681 | 2.477863 | CCCCGCTTTGAATCGATGTTTC | 60.478 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1585 | 1682 | 2.477863 | CCCGCTTTGAATCGATGTTTCC | 60.478 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
1586 | 1683 | 2.420022 | CCGCTTTGAATCGATGTTTCCT | 59.580 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
1587 | 1684 | 3.119849 | CCGCTTTGAATCGATGTTTCCTT | 60.120 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
1588 | 1685 | 4.475944 | CGCTTTGAATCGATGTTTCCTTT | 58.524 | 39.130 | 0.00 | 0.00 | 0.00 | 3.11 |
1589 | 1686 | 4.321745 | CGCTTTGAATCGATGTTTCCTTTG | 59.678 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
1590 | 1687 | 5.222631 | GCTTTGAATCGATGTTTCCTTTGT | 58.777 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
1591 | 1688 | 6.378582 | GCTTTGAATCGATGTTTCCTTTGTA | 58.621 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1592 | 1689 | 6.861055 | GCTTTGAATCGATGTTTCCTTTGTAA | 59.139 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
1605 | 1702 | 5.422666 | TCCTTTGTAATAATCTGCATGCG | 57.577 | 39.130 | 14.09 | 8.20 | 0.00 | 4.73 |
1626 | 1723 | 2.086869 | CGAATGTGAGTGCCAAATCCT | 58.913 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
1633 | 1730 | 3.319122 | GTGAGTGCCAAATCCTTGTTTCT | 59.681 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
1635 | 1732 | 4.037923 | TGAGTGCCAAATCCTTGTTTCTTC | 59.962 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
1654 | 1751 | 3.596066 | CTGTGTGCTCTCCGGTGGG | 62.596 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
1664 | 1761 | 0.899720 | CTCCGGTGGGTTAGCACTTA | 59.100 | 55.000 | 0.00 | 0.00 | 33.83 | 2.24 |
1691 | 1788 | 2.271821 | TGGTCATGCCACCCATCG | 59.728 | 61.111 | 4.93 | 0.00 | 43.61 | 3.84 |
1700 | 1803 | 2.267006 | CACCCATCGCTGCTGAGT | 59.733 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
1728 | 1831 | 3.366679 | GGAGTTCCATGTGCATTCAAGTG | 60.367 | 47.826 | 0.00 | 0.00 | 35.64 | 3.16 |
1737 | 1840 | 4.172505 | TGTGCATTCAAGTGTTTTGTCAC | 58.827 | 39.130 | 0.00 | 0.00 | 38.46 | 3.67 |
1780 | 1883 | 1.742831 | GCATTCACGTATTTGGCCAGA | 59.257 | 47.619 | 5.11 | 0.08 | 0.00 | 3.86 |
1785 | 1888 | 0.690762 | ACGTATTTGGCCAGAGGTGT | 59.309 | 50.000 | 5.11 | 0.21 | 0.00 | 4.16 |
1790 | 1893 | 2.380064 | TTTGGCCAGAGGTGTGAATT | 57.620 | 45.000 | 5.11 | 0.00 | 0.00 | 2.17 |
1800 | 1903 | 4.022849 | CAGAGGTGTGAATTCCCTGTTTTC | 60.023 | 45.833 | 6.48 | 0.00 | 0.00 | 2.29 |
1825 | 1928 | 5.313712 | GTTCATCTGACAGGGTTTTAAGGA | 58.686 | 41.667 | 1.81 | 0.00 | 0.00 | 3.36 |
1838 | 1941 | 4.393371 | GGTTTTAAGGACTGATGAGAGCAC | 59.607 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
1961 | 2064 | 4.620589 | TTGATTTAACCTGTCGGTACCA | 57.379 | 40.909 | 13.54 | 0.00 | 44.73 | 3.25 |
1968 | 2071 | 0.036671 | CCTGTCGGTACCACTTTCCC | 60.037 | 60.000 | 13.54 | 0.00 | 0.00 | 3.97 |
1996 | 2099 | 1.075601 | TTGCAGGATCCTCCAAACCT | 58.924 | 50.000 | 16.10 | 0.00 | 39.61 | 3.50 |
2047 | 2150 | 0.676782 | AAAGCGCTCCGGTTAAGCAT | 60.677 | 50.000 | 12.06 | 0.00 | 46.74 | 3.79 |
2167 | 2270 | 3.056607 | GCAATAGCAAATGGTTGTCCACT | 60.057 | 43.478 | 0.00 | 0.00 | 43.16 | 4.00 |
2220 | 2323 | 6.595682 | TGTTTATTGCCCAATTTCTTTTCCA | 58.404 | 32.000 | 0.00 | 0.00 | 32.50 | 3.53 |
2222 | 2325 | 7.174599 | TGTTTATTGCCCAATTTCTTTTCCATG | 59.825 | 33.333 | 0.00 | 0.00 | 32.50 | 3.66 |
2284 | 2387 | 5.415701 | TGAAGCTTCTATCACCAAAATCACC | 59.584 | 40.000 | 26.09 | 0.00 | 0.00 | 4.02 |
2389 | 2492 | 2.409948 | ACTCCCTCATTTGTGCTAGC | 57.590 | 50.000 | 8.10 | 8.10 | 0.00 | 3.42 |
2533 | 2636 | 4.068599 | CTCCGAGCAGTAGTGATATCTCA | 58.931 | 47.826 | 0.42 | 0.00 | 0.00 | 3.27 |
2896 | 2999 | 2.432146 | TGTGATAAGCACCCTAGCTCTG | 59.568 | 50.000 | 0.00 | 0.00 | 45.89 | 3.35 |
3099 | 3202 | 6.928492 | TGCATTGTTTTCCAGACTTAATTTCC | 59.072 | 34.615 | 0.00 | 0.00 | 0.00 | 3.13 |
3211 | 3314 | 9.734984 | TTAGTTTCTTCCCTTTTCCTATGTAAG | 57.265 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
3234 | 3337 | 6.767456 | AGAAGAGATGTATCATCATGGGAAC | 58.233 | 40.000 | 11.47 | 0.00 | 0.00 | 3.62 |
3407 | 3515 | 6.072673 | GGGTAGTGAAAACTACTGATTTGGTG | 60.073 | 42.308 | 13.97 | 0.00 | 41.57 | 4.17 |
3545 | 3682 | 4.656112 | TCTGGAGGAGTTTCTTGTTCTTCT | 59.344 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
3577 | 3714 | 7.011389 | TGTTCAGTTTCTAGTTGTCATCTTGTG | 59.989 | 37.037 | 0.00 | 0.00 | 0.00 | 3.33 |
3583 | 3720 | 3.845781 | AGTTGTCATCTTGTGGAGTGT | 57.154 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
3614 | 3751 | 6.707440 | TTAAGAAGCAAGAACACATGGAAA | 57.293 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
3781 | 3922 | 3.949586 | TTTGTGCTCCATATCCCATGA | 57.050 | 42.857 | 0.00 | 0.00 | 0.00 | 3.07 |
3786 | 3927 | 5.951204 | TGTGCTCCATATCCCATGATTTTA | 58.049 | 37.500 | 0.00 | 0.00 | 32.18 | 1.52 |
3811 | 3952 | 4.947388 | ACAAAACCGCATTACATCCAGTAT | 59.053 | 37.500 | 0.00 | 0.00 | 31.53 | 2.12 |
4144 | 4285 | 3.701542 | TGGCAACACAACCATTCTGTTTA | 59.298 | 39.130 | 0.00 | 0.00 | 46.17 | 2.01 |
4218 | 4381 | 7.194607 | TGACATTGACTGAAAGAATCTTCAC | 57.805 | 36.000 | 0.00 | 0.00 | 37.43 | 3.18 |
4235 | 4398 | 1.678635 | ACCGTGTTGCCCCATCATG | 60.679 | 57.895 | 0.00 | 0.00 | 0.00 | 3.07 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 8.261522 | GGTGTATTTCAAACTCTATTCTCTCCT | 58.738 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
5 | 6 | 8.261522 | AGGTGTATTTCAAACTCTATTCTCTCC | 58.738 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
6 | 7 | 9.308318 | GAGGTGTATTTCAAACTCTATTCTCTC | 57.692 | 37.037 | 0.00 | 0.00 | 32.86 | 3.20 |
7 | 8 | 8.816894 | TGAGGTGTATTTCAAACTCTATTCTCT | 58.183 | 33.333 | 0.00 | 0.00 | 35.06 | 3.10 |
8 | 9 | 9.606631 | ATGAGGTGTATTTCAAACTCTATTCTC | 57.393 | 33.333 | 0.00 | 0.00 | 35.06 | 2.87 |
13 | 14 | 9.653287 | CAGTTATGAGGTGTATTTCAAACTCTA | 57.347 | 33.333 | 0.00 | 0.00 | 35.06 | 2.43 |
14 | 15 | 8.375506 | TCAGTTATGAGGTGTATTTCAAACTCT | 58.624 | 33.333 | 0.00 | 0.00 | 35.06 | 3.24 |
15 | 16 | 8.547967 | TCAGTTATGAGGTGTATTTCAAACTC | 57.452 | 34.615 | 0.00 | 0.00 | 34.78 | 3.01 |
16 | 17 | 8.918202 | TTCAGTTATGAGGTGTATTTCAAACT | 57.082 | 30.769 | 0.00 | 0.00 | 36.61 | 2.66 |
17 | 18 | 9.612620 | CTTTCAGTTATGAGGTGTATTTCAAAC | 57.387 | 33.333 | 0.00 | 0.00 | 36.61 | 2.93 |
18 | 19 | 9.567776 | TCTTTCAGTTATGAGGTGTATTTCAAA | 57.432 | 29.630 | 0.00 | 0.00 | 36.61 | 2.69 |
19 | 20 | 8.999431 | GTCTTTCAGTTATGAGGTGTATTTCAA | 58.001 | 33.333 | 0.00 | 0.00 | 36.61 | 2.69 |
20 | 21 | 8.154203 | TGTCTTTCAGTTATGAGGTGTATTTCA | 58.846 | 33.333 | 0.00 | 0.00 | 36.61 | 2.69 |
21 | 22 | 8.547967 | TGTCTTTCAGTTATGAGGTGTATTTC | 57.452 | 34.615 | 0.00 | 0.00 | 36.61 | 2.17 |
22 | 23 | 8.918202 | TTGTCTTTCAGTTATGAGGTGTATTT | 57.082 | 30.769 | 0.00 | 0.00 | 36.61 | 1.40 |
23 | 24 | 8.918202 | TTTGTCTTTCAGTTATGAGGTGTATT | 57.082 | 30.769 | 0.00 | 0.00 | 36.61 | 1.89 |
24 | 25 | 8.918202 | TTTTGTCTTTCAGTTATGAGGTGTAT | 57.082 | 30.769 | 0.00 | 0.00 | 36.61 | 2.29 |
25 | 26 | 8.208224 | TCTTTTGTCTTTCAGTTATGAGGTGTA | 58.792 | 33.333 | 0.00 | 0.00 | 36.61 | 2.90 |
26 | 27 | 7.054124 | TCTTTTGTCTTTCAGTTATGAGGTGT | 58.946 | 34.615 | 0.00 | 0.00 | 36.61 | 4.16 |
27 | 28 | 7.227512 | ACTCTTTTGTCTTTCAGTTATGAGGTG | 59.772 | 37.037 | 0.00 | 0.00 | 36.61 | 4.00 |
28 | 29 | 7.227512 | CACTCTTTTGTCTTTCAGTTATGAGGT | 59.772 | 37.037 | 0.00 | 0.00 | 36.61 | 3.85 |
29 | 30 | 7.227512 | ACACTCTTTTGTCTTTCAGTTATGAGG | 59.772 | 37.037 | 0.00 | 0.00 | 36.61 | 3.86 |
30 | 31 | 8.147642 | ACACTCTTTTGTCTTTCAGTTATGAG | 57.852 | 34.615 | 0.00 | 0.00 | 36.61 | 2.90 |
31 | 32 | 8.506168 | AACACTCTTTTGTCTTTCAGTTATGA | 57.494 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
32 | 33 | 9.651718 | GTAACACTCTTTTGTCTTTCAGTTATG | 57.348 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
33 | 34 | 9.614792 | AGTAACACTCTTTTGTCTTTCAGTTAT | 57.385 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
34 | 35 | 9.095065 | GAGTAACACTCTTTTGTCTTTCAGTTA | 57.905 | 33.333 | 0.00 | 0.00 | 41.88 | 2.24 |
35 | 36 | 7.923414 | AGTAACACTCTTTTGTCTTTCAGTT | 57.077 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
36 | 37 | 7.541122 | GAGTAACACTCTTTTGTCTTTCAGT | 57.459 | 36.000 | 0.00 | 0.00 | 41.88 | 3.41 |
50 | 51 | 5.361285 | ACATCATACTGGGAGAGTAACACTC | 59.639 | 44.000 | 0.00 | 0.00 | 45.38 | 3.51 |
51 | 52 | 5.273208 | ACATCATACTGGGAGAGTAACACT | 58.727 | 41.667 | 0.00 | 0.00 | 40.67 | 3.55 |
52 | 53 | 5.599999 | ACATCATACTGGGAGAGTAACAC | 57.400 | 43.478 | 0.00 | 0.00 | 40.67 | 3.32 |
53 | 54 | 5.626809 | GCAACATCATACTGGGAGAGTAACA | 60.627 | 44.000 | 0.00 | 0.00 | 40.67 | 2.41 |
54 | 55 | 4.811557 | GCAACATCATACTGGGAGAGTAAC | 59.188 | 45.833 | 0.00 | 0.00 | 40.67 | 2.50 |
55 | 56 | 4.141711 | GGCAACATCATACTGGGAGAGTAA | 60.142 | 45.833 | 0.00 | 0.00 | 40.67 | 2.24 |
56 | 57 | 3.388024 | GGCAACATCATACTGGGAGAGTA | 59.612 | 47.826 | 0.00 | 0.00 | 41.57 | 2.59 |
57 | 58 | 2.171448 | GGCAACATCATACTGGGAGAGT | 59.829 | 50.000 | 0.00 | 0.00 | 38.88 | 3.24 |
58 | 59 | 2.486191 | GGGCAACATCATACTGGGAGAG | 60.486 | 54.545 | 0.00 | 0.00 | 39.74 | 3.20 |
59 | 60 | 1.490490 | GGGCAACATCATACTGGGAGA | 59.510 | 52.381 | 0.00 | 0.00 | 39.74 | 3.71 |
60 | 61 | 1.212688 | TGGGCAACATCATACTGGGAG | 59.787 | 52.381 | 0.00 | 0.00 | 39.74 | 4.30 |
61 | 62 | 1.294041 | TGGGCAACATCATACTGGGA | 58.706 | 50.000 | 0.00 | 0.00 | 39.74 | 4.37 |
62 | 63 | 2.142356 | TTGGGCAACATCATACTGGG | 57.858 | 50.000 | 0.00 | 0.00 | 39.74 | 4.45 |
63 | 64 | 4.403432 | AGAAATTGGGCAACATCATACTGG | 59.597 | 41.667 | 0.00 | 0.00 | 39.74 | 4.00 |
64 | 65 | 5.587388 | AGAAATTGGGCAACATCATACTG | 57.413 | 39.130 | 0.00 | 0.00 | 39.74 | 2.74 |
65 | 66 | 5.163622 | CGAAGAAATTGGGCAACATCATACT | 60.164 | 40.000 | 0.00 | 0.00 | 39.74 | 2.12 |
66 | 67 | 5.036737 | CGAAGAAATTGGGCAACATCATAC | 58.963 | 41.667 | 0.00 | 0.00 | 39.74 | 2.39 |
67 | 68 | 4.439974 | GCGAAGAAATTGGGCAACATCATA | 60.440 | 41.667 | 0.00 | 0.00 | 39.74 | 2.15 |
68 | 69 | 3.676873 | GCGAAGAAATTGGGCAACATCAT | 60.677 | 43.478 | 0.00 | 0.00 | 39.74 | 2.45 |
69 | 70 | 2.352617 | GCGAAGAAATTGGGCAACATCA | 60.353 | 45.455 | 0.00 | 0.00 | 39.74 | 3.07 |
70 | 71 | 2.262211 | GCGAAGAAATTGGGCAACATC | 58.738 | 47.619 | 0.00 | 0.00 | 39.74 | 3.06 |
71 | 72 | 1.066929 | GGCGAAGAAATTGGGCAACAT | 60.067 | 47.619 | 0.00 | 0.00 | 39.74 | 2.71 |
72 | 73 | 0.316841 | GGCGAAGAAATTGGGCAACA | 59.683 | 50.000 | 0.00 | 0.00 | 39.74 | 3.33 |
73 | 74 | 0.389817 | GGGCGAAGAAATTGGGCAAC | 60.390 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
74 | 75 | 1.540435 | GGGGCGAAGAAATTGGGCAA | 61.540 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
75 | 76 | 1.981853 | GGGGCGAAGAAATTGGGCA | 60.982 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
76 | 77 | 2.721167 | GGGGGCGAAGAAATTGGGC | 61.721 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
77 | 78 | 0.902516 | TTGGGGGCGAAGAAATTGGG | 60.903 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
78 | 79 | 0.972883 | TTTGGGGGCGAAGAAATTGG | 59.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
79 | 80 | 2.298729 | TCTTTTGGGGGCGAAGAAATTG | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
80 | 81 | 2.604139 | TCTTTTGGGGGCGAAGAAATT | 58.396 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
81 | 82 | 2.302587 | TCTTTTGGGGGCGAAGAAAT | 57.697 | 45.000 | 0.00 | 0.00 | 0.00 | 2.17 |
82 | 83 | 1.892474 | CATCTTTTGGGGGCGAAGAAA | 59.108 | 47.619 | 0.00 | 0.00 | 33.56 | 2.52 |
83 | 84 | 1.544724 | CATCTTTTGGGGGCGAAGAA | 58.455 | 50.000 | 0.00 | 0.00 | 33.56 | 2.52 |
84 | 85 | 0.323360 | CCATCTTTTGGGGGCGAAGA | 60.323 | 55.000 | 0.00 | 0.00 | 42.33 | 2.87 |
85 | 86 | 2.192605 | CCATCTTTTGGGGGCGAAG | 58.807 | 57.895 | 0.00 | 0.00 | 42.33 | 3.79 |
86 | 87 | 4.432601 | CCATCTTTTGGGGGCGAA | 57.567 | 55.556 | 0.00 | 0.00 | 42.33 | 4.70 |
91 | 92 | 7.702348 | ATCAAGAGTGAAACCATCTTTTGGGG | 61.702 | 42.308 | 0.00 | 0.00 | 43.15 | 4.96 |
92 | 93 | 5.244626 | ATCAAGAGTGAAACCATCTTTTGGG | 59.755 | 40.000 | 0.00 | 0.00 | 43.15 | 4.12 |
93 | 94 | 6.154445 | CATCAAGAGTGAAACCATCTTTTGG | 58.846 | 40.000 | 0.00 | 0.00 | 43.91 | 3.28 |
94 | 95 | 6.742109 | ACATCAAGAGTGAAACCATCTTTTG | 58.258 | 36.000 | 0.00 | 0.00 | 37.80 | 2.44 |
95 | 96 | 6.966534 | ACATCAAGAGTGAAACCATCTTTT | 57.033 | 33.333 | 0.00 | 0.00 | 37.80 | 2.27 |
96 | 97 | 6.322201 | ACAACATCAAGAGTGAAACCATCTTT | 59.678 | 34.615 | 0.00 | 0.00 | 37.80 | 2.52 |
97 | 98 | 5.829924 | ACAACATCAAGAGTGAAACCATCTT | 59.170 | 36.000 | 0.00 | 0.00 | 37.80 | 2.40 |
98 | 99 | 5.380043 | ACAACATCAAGAGTGAAACCATCT | 58.620 | 37.500 | 0.00 | 0.00 | 37.80 | 2.90 |
99 | 100 | 5.695851 | ACAACATCAAGAGTGAAACCATC | 57.304 | 39.130 | 0.00 | 0.00 | 37.80 | 3.51 |
100 | 101 | 5.593909 | TCAACAACATCAAGAGTGAAACCAT | 59.406 | 36.000 | 0.00 | 0.00 | 37.80 | 3.55 |
101 | 102 | 4.946772 | TCAACAACATCAAGAGTGAAACCA | 59.053 | 37.500 | 0.00 | 0.00 | 37.80 | 3.67 |
102 | 103 | 5.499139 | TCAACAACATCAAGAGTGAAACC | 57.501 | 39.130 | 0.00 | 0.00 | 37.80 | 3.27 |
103 | 104 | 4.972440 | GCTCAACAACATCAAGAGTGAAAC | 59.028 | 41.667 | 0.00 | 0.00 | 37.30 | 2.78 |
104 | 105 | 4.639755 | TGCTCAACAACATCAAGAGTGAAA | 59.360 | 37.500 | 0.00 | 0.00 | 37.30 | 2.69 |
105 | 106 | 4.198530 | TGCTCAACAACATCAAGAGTGAA | 58.801 | 39.130 | 0.00 | 0.00 | 37.30 | 3.18 |
106 | 107 | 3.807553 | TGCTCAACAACATCAAGAGTGA | 58.192 | 40.909 | 0.00 | 0.00 | 38.41 | 3.41 |
107 | 108 | 4.556942 | TTGCTCAACAACATCAAGAGTG | 57.443 | 40.909 | 0.00 | 0.00 | 31.73 | 3.51 |
108 | 109 | 5.343249 | GTTTTGCTCAACAACATCAAGAGT | 58.657 | 37.500 | 0.00 | 0.00 | 38.23 | 3.24 |
109 | 110 | 4.741676 | GGTTTTGCTCAACAACATCAAGAG | 59.258 | 41.667 | 1.71 | 0.00 | 38.23 | 2.85 |
110 | 111 | 4.681744 | GGTTTTGCTCAACAACATCAAGA | 58.318 | 39.130 | 1.71 | 0.00 | 38.23 | 3.02 |
111 | 112 | 3.486841 | CGGTTTTGCTCAACAACATCAAG | 59.513 | 43.478 | 1.71 | 0.00 | 38.23 | 3.02 |
112 | 113 | 3.119316 | ACGGTTTTGCTCAACAACATCAA | 60.119 | 39.130 | 0.00 | 0.00 | 38.23 | 2.57 |
113 | 114 | 2.425312 | ACGGTTTTGCTCAACAACATCA | 59.575 | 40.909 | 0.00 | 0.00 | 38.23 | 3.07 |
114 | 115 | 3.078594 | ACGGTTTTGCTCAACAACATC | 57.921 | 42.857 | 0.00 | 0.00 | 38.23 | 3.06 |
115 | 116 | 3.186119 | CAACGGTTTTGCTCAACAACAT | 58.814 | 40.909 | 0.00 | 0.00 | 38.23 | 2.71 |
116 | 117 | 2.600731 | CAACGGTTTTGCTCAACAACA | 58.399 | 42.857 | 0.00 | 0.00 | 38.23 | 3.33 |
117 | 118 | 1.923864 | CCAACGGTTTTGCTCAACAAC | 59.076 | 47.619 | 0.00 | 0.00 | 38.23 | 3.32 |
118 | 119 | 1.819288 | TCCAACGGTTTTGCTCAACAA | 59.181 | 42.857 | 0.00 | 0.00 | 36.13 | 2.83 |
119 | 120 | 1.403679 | CTCCAACGGTTTTGCTCAACA | 59.596 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
120 | 121 | 1.269051 | CCTCCAACGGTTTTGCTCAAC | 60.269 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
121 | 122 | 1.028905 | CCTCCAACGGTTTTGCTCAA | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
122 | 123 | 1.452145 | GCCTCCAACGGTTTTGCTCA | 61.452 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
123 | 124 | 1.285950 | GCCTCCAACGGTTTTGCTC | 59.714 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
124 | 125 | 0.827507 | ATGCCTCCAACGGTTTTGCT | 60.828 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
125 | 126 | 0.667184 | CATGCCTCCAACGGTTTTGC | 60.667 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
126 | 127 | 0.667184 | GCATGCCTCCAACGGTTTTG | 60.667 | 55.000 | 6.36 | 0.00 | 0.00 | 2.44 |
127 | 128 | 0.827507 | AGCATGCCTCCAACGGTTTT | 60.828 | 50.000 | 15.66 | 0.00 | 0.00 | 2.43 |
128 | 129 | 1.228552 | AGCATGCCTCCAACGGTTT | 60.229 | 52.632 | 15.66 | 0.00 | 0.00 | 3.27 |
129 | 130 | 1.675641 | GAGCATGCCTCCAACGGTT | 60.676 | 57.895 | 15.66 | 0.00 | 34.35 | 4.44 |
130 | 131 | 2.045926 | GAGCATGCCTCCAACGGT | 60.046 | 61.111 | 15.66 | 0.00 | 34.35 | 4.83 |
131 | 132 | 0.962356 | AAAGAGCATGCCTCCAACGG | 60.962 | 55.000 | 15.66 | 0.00 | 41.74 | 4.44 |
132 | 133 | 0.883833 | AAAAGAGCATGCCTCCAACG | 59.116 | 50.000 | 15.66 | 0.00 | 41.74 | 4.10 |
133 | 134 | 1.615392 | ACAAAAGAGCATGCCTCCAAC | 59.385 | 47.619 | 15.66 | 0.00 | 41.74 | 3.77 |
134 | 135 | 1.888512 | GACAAAAGAGCATGCCTCCAA | 59.111 | 47.619 | 15.66 | 0.00 | 41.74 | 3.53 |
135 | 136 | 1.538047 | GACAAAAGAGCATGCCTCCA | 58.462 | 50.000 | 15.66 | 0.00 | 41.74 | 3.86 |
136 | 137 | 0.449388 | CGACAAAAGAGCATGCCTCC | 59.551 | 55.000 | 15.66 | 3.99 | 41.74 | 4.30 |
137 | 138 | 1.442769 | TCGACAAAAGAGCATGCCTC | 58.557 | 50.000 | 15.66 | 11.38 | 41.07 | 4.70 |
138 | 139 | 1.896220 | TTCGACAAAAGAGCATGCCT | 58.104 | 45.000 | 15.66 | 8.56 | 0.00 | 4.75 |
139 | 140 | 2.704725 | TTTCGACAAAAGAGCATGCC | 57.295 | 45.000 | 15.66 | 6.03 | 0.00 | 4.40 |
140 | 141 | 4.090498 | GGATTTTTCGACAAAAGAGCATGC | 59.910 | 41.667 | 10.51 | 10.51 | 32.96 | 4.06 |
141 | 142 | 4.321745 | CGGATTTTTCGACAAAAGAGCATG | 59.678 | 41.667 | 0.11 | 0.00 | 32.96 | 4.06 |
142 | 143 | 4.475944 | CGGATTTTTCGACAAAAGAGCAT | 58.524 | 39.130 | 0.11 | 0.00 | 32.96 | 3.79 |
143 | 144 | 3.304391 | CCGGATTTTTCGACAAAAGAGCA | 60.304 | 43.478 | 0.00 | 0.00 | 32.96 | 4.26 |
144 | 145 | 3.234386 | CCGGATTTTTCGACAAAAGAGC | 58.766 | 45.455 | 0.00 | 0.00 | 32.96 | 4.09 |
145 | 146 | 3.821841 | CCCGGATTTTTCGACAAAAGAG | 58.178 | 45.455 | 0.73 | 0.00 | 32.96 | 2.85 |
146 | 147 | 2.030628 | GCCCGGATTTTTCGACAAAAGA | 60.031 | 45.455 | 0.73 | 0.00 | 32.96 | 2.52 |
147 | 148 | 2.287909 | TGCCCGGATTTTTCGACAAAAG | 60.288 | 45.455 | 0.73 | 0.00 | 32.96 | 2.27 |
148 | 149 | 1.681793 | TGCCCGGATTTTTCGACAAAA | 59.318 | 42.857 | 0.73 | 4.66 | 0.00 | 2.44 |
149 | 150 | 1.319541 | TGCCCGGATTTTTCGACAAA | 58.680 | 45.000 | 0.73 | 0.00 | 0.00 | 2.83 |
150 | 151 | 1.540267 | ATGCCCGGATTTTTCGACAA | 58.460 | 45.000 | 0.73 | 0.00 | 0.00 | 3.18 |
151 | 152 | 1.470890 | GAATGCCCGGATTTTTCGACA | 59.529 | 47.619 | 0.73 | 0.00 | 0.00 | 4.35 |
152 | 153 | 1.202256 | GGAATGCCCGGATTTTTCGAC | 60.202 | 52.381 | 0.73 | 0.00 | 0.00 | 4.20 |
153 | 154 | 1.099689 | GGAATGCCCGGATTTTTCGA | 58.900 | 50.000 | 0.73 | 0.00 | 0.00 | 3.71 |
154 | 155 | 3.641031 | GGAATGCCCGGATTTTTCG | 57.359 | 52.632 | 0.73 | 0.00 | 0.00 | 3.46 |
164 | 165 | 1.238625 | TTGGAACGAACGGAATGCCC | 61.239 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
165 | 166 | 0.594110 | TTTGGAACGAACGGAATGCC | 59.406 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
166 | 167 | 2.250188 | CATTTGGAACGAACGGAATGC | 58.750 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
167 | 168 | 2.227865 | ACCATTTGGAACGAACGGAATG | 59.772 | 45.455 | 3.01 | 0.00 | 38.94 | 2.67 |
168 | 169 | 2.486592 | GACCATTTGGAACGAACGGAAT | 59.513 | 45.455 | 3.01 | 0.00 | 38.94 | 3.01 |
169 | 170 | 1.874872 | GACCATTTGGAACGAACGGAA | 59.125 | 47.619 | 3.01 | 0.00 | 38.94 | 4.30 |
170 | 171 | 1.515081 | GACCATTTGGAACGAACGGA | 58.485 | 50.000 | 3.01 | 0.00 | 38.94 | 4.69 |
171 | 172 | 0.519961 | GGACCATTTGGAACGAACGG | 59.480 | 55.000 | 3.01 | 0.00 | 38.94 | 4.44 |
172 | 173 | 1.231221 | TGGACCATTTGGAACGAACG | 58.769 | 50.000 | 3.01 | 0.00 | 38.94 | 3.95 |
173 | 174 | 3.506067 | AGAATGGACCATTTGGAACGAAC | 59.494 | 43.478 | 20.71 | 5.05 | 33.90 | 3.95 |
174 | 175 | 3.761897 | AGAATGGACCATTTGGAACGAA | 58.238 | 40.909 | 20.71 | 0.00 | 33.90 | 3.85 |
175 | 176 | 3.433306 | AGAATGGACCATTTGGAACGA | 57.567 | 42.857 | 20.71 | 0.00 | 33.90 | 3.85 |
176 | 177 | 5.835113 | ATTAGAATGGACCATTTGGAACG | 57.165 | 39.130 | 20.71 | 0.00 | 33.90 | 3.95 |
202 | 203 | 8.028652 | AGGATGGACCATTTTTGTCTTAAAAA | 57.971 | 30.769 | 8.78 | 0.00 | 42.04 | 1.94 |
203 | 204 | 7.610580 | AGGATGGACCATTTTTGTCTTAAAA | 57.389 | 32.000 | 8.78 | 0.00 | 42.04 | 1.52 |
204 | 205 | 8.713708 | TTAGGATGGACCATTTTTGTCTTAAA | 57.286 | 30.769 | 8.78 | 0.00 | 42.04 | 1.52 |
205 | 206 | 8.893563 | ATTAGGATGGACCATTTTTGTCTTAA | 57.106 | 30.769 | 8.78 | 3.17 | 42.04 | 1.85 |
206 | 207 | 9.627123 | CTATTAGGATGGACCATTTTTGTCTTA | 57.373 | 33.333 | 8.78 | 0.00 | 42.04 | 2.10 |
207 | 208 | 7.068716 | GCTATTAGGATGGACCATTTTTGTCTT | 59.931 | 37.037 | 8.78 | 0.00 | 42.04 | 3.01 |
208 | 209 | 6.547510 | GCTATTAGGATGGACCATTTTTGTCT | 59.452 | 38.462 | 8.78 | 3.12 | 42.04 | 3.41 |
209 | 210 | 6.321181 | TGCTATTAGGATGGACCATTTTTGTC | 59.679 | 38.462 | 8.78 | 0.00 | 42.04 | 3.18 |
210 | 211 | 6.194235 | TGCTATTAGGATGGACCATTTTTGT | 58.806 | 36.000 | 8.78 | 0.00 | 42.04 | 2.83 |
211 | 212 | 6.713762 | TGCTATTAGGATGGACCATTTTTG | 57.286 | 37.500 | 8.78 | 0.00 | 42.04 | 2.44 |
212 | 213 | 7.068702 | TCATGCTATTAGGATGGACCATTTTT | 58.931 | 34.615 | 20.87 | 0.13 | 43.25 | 1.94 |
213 | 214 | 6.613699 | TCATGCTATTAGGATGGACCATTTT | 58.386 | 36.000 | 20.87 | 2.71 | 43.25 | 1.82 |
249 | 255 | 7.201741 | GGGCCAAAACAAAACAAAAATAGCTTA | 60.202 | 33.333 | 4.39 | 0.00 | 0.00 | 3.09 |
251 | 257 | 5.067153 | GGGCCAAAACAAAACAAAAATAGCT | 59.933 | 36.000 | 4.39 | 0.00 | 0.00 | 3.32 |
260 | 266 | 1.153349 | GGCGGGCCAAAACAAAACA | 60.153 | 52.632 | 4.39 | 0.00 | 35.81 | 2.83 |
261 | 267 | 1.890041 | GGGCGGGCCAAAACAAAAC | 60.890 | 57.895 | 16.76 | 0.00 | 37.98 | 2.43 |
262 | 268 | 1.910580 | TTGGGCGGGCCAAAACAAAA | 61.911 | 50.000 | 31.10 | 9.19 | 37.98 | 2.44 |
321 | 327 | 8.154203 | TCTAATTTCATTAATCTCCGTGCCATA | 58.846 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
327 | 333 | 9.838339 | ATGTTCTCTAATTTCATTAATCTCCGT | 57.162 | 29.630 | 0.00 | 0.00 | 0.00 | 4.69 |
400 | 406 | 5.747197 | GTGAGATTGCAAGCCTCAATATTTG | 59.253 | 40.000 | 26.17 | 0.00 | 38.49 | 2.32 |
405 | 411 | 2.799017 | TGTGAGATTGCAAGCCTCAAT | 58.201 | 42.857 | 26.17 | 4.69 | 38.49 | 2.57 |
411 | 417 | 3.082698 | TGTGTTTGTGAGATTGCAAGC | 57.917 | 42.857 | 6.58 | 6.58 | 0.00 | 4.01 |
414 | 420 | 2.957680 | ACCATGTGTTTGTGAGATTGCA | 59.042 | 40.909 | 0.00 | 0.00 | 0.00 | 4.08 |
415 | 421 | 3.648339 | ACCATGTGTTTGTGAGATTGC | 57.352 | 42.857 | 0.00 | 0.00 | 0.00 | 3.56 |
428 | 434 | 2.941415 | GCCCCTAGAGTCAAACCATGTG | 60.941 | 54.545 | 0.00 | 0.00 | 0.00 | 3.21 |
436 | 442 | 1.995626 | GGCCAGCCCCTAGAGTCAA | 60.996 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
457 | 463 | 4.859304 | AAATAAGGTTTTCGGGTTGGTC | 57.141 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
578 | 585 | 3.655810 | CTCTGCAGTCCTGGTCGCC | 62.656 | 68.421 | 14.67 | 0.00 | 0.00 | 5.54 |
581 | 588 | 2.777832 | AATTCTCTGCAGTCCTGGTC | 57.222 | 50.000 | 14.67 | 0.00 | 0.00 | 4.02 |
585 | 596 | 6.040955 | TCGATGTATAAATTCTCTGCAGTCCT | 59.959 | 38.462 | 14.67 | 0.00 | 0.00 | 3.85 |
590 | 601 | 7.661040 | TGATCTCGATGTATAAATTCTCTGCA | 58.339 | 34.615 | 0.00 | 0.00 | 0.00 | 4.41 |
647 | 658 | 7.118723 | AGATGTTTTGATGTCCTGCCTTTATA | 58.881 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
679 | 690 | 0.745845 | CCCGAACTGGAGCAGATTGG | 60.746 | 60.000 | 0.00 | 0.00 | 42.00 | 3.16 |
744 | 760 | 4.488126 | TGACCAAAGAAAATGAGCGAAG | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 3.79 |
745 | 761 | 4.909696 | TTGACCAAAGAAAATGAGCGAA | 57.090 | 36.364 | 0.00 | 0.00 | 0.00 | 4.70 |
748 | 764 | 5.166398 | CAGGATTGACCAAAGAAAATGAGC | 58.834 | 41.667 | 0.00 | 0.00 | 42.04 | 4.26 |
775 | 799 | 1.210722 | TGTGGACTTGTGGTTGCAGTA | 59.789 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
868 | 892 | 4.081030 | CTTGTGACGCTGCCGCTG | 62.081 | 66.667 | 0.00 | 0.00 | 38.22 | 5.18 |
869 | 893 | 4.609018 | ACTTGTGACGCTGCCGCT | 62.609 | 61.111 | 0.00 | 0.00 | 38.22 | 5.52 |
872 | 896 | 2.029844 | GAGGACTTGTGACGCTGCC | 61.030 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
873 | 897 | 2.375766 | CGAGGACTTGTGACGCTGC | 61.376 | 63.158 | 0.00 | 0.00 | 0.00 | 5.25 |
874 | 898 | 2.375766 | GCGAGGACTTGTGACGCTG | 61.376 | 63.158 | 0.00 | 0.00 | 44.67 | 5.18 |
875 | 899 | 2.049063 | GCGAGGACTTGTGACGCT | 60.049 | 61.111 | 0.00 | 0.00 | 44.67 | 5.07 |
877 | 901 | 0.798771 | GCTAGCGAGGACTTGTGACG | 60.799 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
914 | 938 | 1.206072 | GCCGTCGCTATCGTATCGT | 59.794 | 57.895 | 0.00 | 0.00 | 36.96 | 3.73 |
915 | 939 | 1.857853 | CGCCGTCGCTATCGTATCG | 60.858 | 63.158 | 0.00 | 0.00 | 36.96 | 2.92 |
917 | 941 | 0.308684 | TTTCGCCGTCGCTATCGTAT | 59.691 | 50.000 | 0.00 | 0.00 | 36.96 | 3.06 |
958 | 982 | 1.660264 | CCTTTTTGTTCCGTGCCGC | 60.660 | 57.895 | 0.00 | 0.00 | 0.00 | 6.53 |
1209 | 1254 | 3.300388 | TGCGATTTCTATCTGGACCTCT | 58.700 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
1335 | 1416 | 2.430075 | CGTCGCGACCACATCACA | 60.430 | 61.111 | 31.84 | 0.00 | 0.00 | 3.58 |
1336 | 1417 | 2.430244 | ACGTCGCGACCACATCAC | 60.430 | 61.111 | 31.84 | 6.96 | 0.00 | 3.06 |
1413 | 1506 | 3.007635 | CCAACGGACCACTAAATTCCTC | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1486 | 1583 | 1.447314 | GGTACACCGTACTGCCAGC | 60.447 | 63.158 | 4.43 | 0.00 | 0.00 | 4.85 |
1487 | 1584 | 4.904466 | GGTACACCGTACTGCCAG | 57.096 | 61.111 | 4.43 | 0.00 | 0.00 | 4.85 |
1498 | 1595 | 4.858692 | TGCTCGTAAATAAACTCGGTACAC | 59.141 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
1499 | 1596 | 5.058149 | TGCTCGTAAATAAACTCGGTACA | 57.942 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
1503 | 1600 | 4.565166 | TGACATGCTCGTAAATAAACTCGG | 59.435 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
1506 | 1603 | 7.435068 | AGTTTGACATGCTCGTAAATAAACT | 57.565 | 32.000 | 0.00 | 0.00 | 32.75 | 2.66 |
1514 | 1611 | 2.496070 | AGCCTAGTTTGACATGCTCGTA | 59.504 | 45.455 | 0.00 | 0.00 | 0.00 | 3.43 |
1524 | 1621 | 2.882137 | CGGTTGGAAAAGCCTAGTTTGA | 59.118 | 45.455 | 0.00 | 0.00 | 37.63 | 2.69 |
1526 | 1623 | 3.217681 | TCGGTTGGAAAAGCCTAGTTT | 57.782 | 42.857 | 0.00 | 0.00 | 37.63 | 2.66 |
1538 | 1635 | 3.429684 | GGCAAAAGACTTTTTCGGTTGGA | 60.430 | 43.478 | 10.52 | 0.00 | 34.34 | 3.53 |
1539 | 1636 | 2.863740 | GGCAAAAGACTTTTTCGGTTGG | 59.136 | 45.455 | 10.52 | 0.00 | 34.34 | 3.77 |
1540 | 1637 | 3.551485 | CAGGCAAAAGACTTTTTCGGTTG | 59.449 | 43.478 | 10.52 | 0.89 | 34.34 | 3.77 |
1541 | 1638 | 3.780902 | CAGGCAAAAGACTTTTTCGGTT | 58.219 | 40.909 | 10.52 | 0.00 | 34.34 | 4.44 |
1542 | 1639 | 2.481276 | GCAGGCAAAAGACTTTTTCGGT | 60.481 | 45.455 | 10.52 | 0.00 | 34.34 | 4.69 |
1543 | 1640 | 2.127251 | GCAGGCAAAAGACTTTTTCGG | 58.873 | 47.619 | 10.52 | 8.12 | 34.34 | 4.30 |
1544 | 1641 | 2.127251 | GGCAGGCAAAAGACTTTTTCG | 58.873 | 47.619 | 10.52 | 2.37 | 34.34 | 3.46 |
1545 | 1642 | 2.483876 | GGGCAGGCAAAAGACTTTTTC | 58.516 | 47.619 | 10.52 | 6.12 | 34.34 | 2.29 |
1546 | 1643 | 1.140852 | GGGGCAGGCAAAAGACTTTTT | 59.859 | 47.619 | 10.52 | 0.00 | 36.97 | 1.94 |
1547 | 1644 | 0.758734 | GGGGCAGGCAAAAGACTTTT | 59.241 | 50.000 | 7.38 | 7.38 | 0.00 | 2.27 |
1548 | 1645 | 1.463553 | CGGGGCAGGCAAAAGACTTT | 61.464 | 55.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1549 | 1646 | 1.903404 | CGGGGCAGGCAAAAGACTT | 60.903 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
1550 | 1647 | 2.282462 | CGGGGCAGGCAAAAGACT | 60.282 | 61.111 | 0.00 | 0.00 | 0.00 | 3.24 |
1551 | 1648 | 4.056125 | GCGGGGCAGGCAAAAGAC | 62.056 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1552 | 1649 | 3.808218 | AAGCGGGGCAGGCAAAAGA | 62.808 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
1553 | 1650 | 2.871253 | AAAGCGGGGCAGGCAAAAG | 61.871 | 57.895 | 0.00 | 0.00 | 0.00 | 2.27 |
1555 | 1652 | 3.614698 | CAAAGCGGGGCAGGCAAA | 61.615 | 61.111 | 0.00 | 0.00 | 0.00 | 3.68 |
1556 | 1653 | 4.594854 | TCAAAGCGGGGCAGGCAA | 62.595 | 61.111 | 0.00 | 0.00 | 0.00 | 4.52 |
1557 | 1654 | 3.884704 | ATTCAAAGCGGGGCAGGCA | 62.885 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
1558 | 1655 | 3.068729 | GATTCAAAGCGGGGCAGGC | 62.069 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
1559 | 1656 | 2.764314 | CGATTCAAAGCGGGGCAGG | 61.764 | 63.158 | 0.00 | 0.00 | 33.58 | 4.85 |
1560 | 1657 | 1.097547 | ATCGATTCAAAGCGGGGCAG | 61.098 | 55.000 | 0.17 | 0.00 | 38.53 | 4.85 |
1561 | 1658 | 1.077787 | ATCGATTCAAAGCGGGGCA | 60.078 | 52.632 | 0.17 | 0.00 | 38.53 | 5.36 |
1562 | 1659 | 1.356624 | CATCGATTCAAAGCGGGGC | 59.643 | 57.895 | 0.00 | 0.00 | 38.53 | 5.80 |
1563 | 1660 | 1.094785 | AACATCGATTCAAAGCGGGG | 58.905 | 50.000 | 0.00 | 0.00 | 38.53 | 5.73 |
1564 | 1661 | 2.477863 | GGAAACATCGATTCAAAGCGGG | 60.478 | 50.000 | 0.00 | 0.00 | 38.53 | 6.13 |
1565 | 1662 | 2.420022 | AGGAAACATCGATTCAAAGCGG | 59.580 | 45.455 | 0.00 | 0.00 | 38.53 | 5.52 |
1566 | 1663 | 3.747099 | AGGAAACATCGATTCAAAGCG | 57.253 | 42.857 | 0.00 | 0.00 | 39.51 | 4.68 |
1567 | 1664 | 5.222631 | ACAAAGGAAACATCGATTCAAAGC | 58.777 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
1568 | 1665 | 8.970691 | ATTACAAAGGAAACATCGATTCAAAG | 57.029 | 30.769 | 0.00 | 0.00 | 0.00 | 2.77 |
1574 | 1671 | 8.345565 | GCAGATTATTACAAAGGAAACATCGAT | 58.654 | 33.333 | 0.00 | 0.00 | 0.00 | 3.59 |
1575 | 1672 | 7.335673 | TGCAGATTATTACAAAGGAAACATCGA | 59.664 | 33.333 | 0.00 | 0.00 | 0.00 | 3.59 |
1576 | 1673 | 7.471721 | TGCAGATTATTACAAAGGAAACATCG | 58.528 | 34.615 | 0.00 | 0.00 | 0.00 | 3.84 |
1577 | 1674 | 9.241317 | CATGCAGATTATTACAAAGGAAACATC | 57.759 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
1578 | 1675 | 7.707893 | GCATGCAGATTATTACAAAGGAAACAT | 59.292 | 33.333 | 14.21 | 0.00 | 0.00 | 2.71 |
1579 | 1676 | 7.035004 | GCATGCAGATTATTACAAAGGAAACA | 58.965 | 34.615 | 14.21 | 0.00 | 0.00 | 2.83 |
1580 | 1677 | 6.197096 | CGCATGCAGATTATTACAAAGGAAAC | 59.803 | 38.462 | 19.57 | 0.00 | 0.00 | 2.78 |
1581 | 1678 | 6.264832 | CGCATGCAGATTATTACAAAGGAAA | 58.735 | 36.000 | 19.57 | 0.00 | 0.00 | 3.13 |
1582 | 1679 | 5.733091 | GCGCATGCAGATTATTACAAAGGAA | 60.733 | 40.000 | 19.57 | 0.00 | 42.15 | 3.36 |
1583 | 1680 | 4.261155 | GCGCATGCAGATTATTACAAAGGA | 60.261 | 41.667 | 19.57 | 0.00 | 42.15 | 3.36 |
1584 | 1681 | 3.976942 | GCGCATGCAGATTATTACAAAGG | 59.023 | 43.478 | 19.57 | 0.00 | 42.15 | 3.11 |
1585 | 1682 | 3.660813 | CGCGCATGCAGATTATTACAAAG | 59.339 | 43.478 | 19.57 | 0.00 | 42.97 | 2.77 |
1586 | 1683 | 3.311048 | TCGCGCATGCAGATTATTACAAA | 59.689 | 39.130 | 19.57 | 0.00 | 42.97 | 2.83 |
1587 | 1684 | 2.869192 | TCGCGCATGCAGATTATTACAA | 59.131 | 40.909 | 19.57 | 0.00 | 42.97 | 2.41 |
1588 | 1685 | 2.478831 | TCGCGCATGCAGATTATTACA | 58.521 | 42.857 | 19.57 | 0.00 | 42.97 | 2.41 |
1589 | 1686 | 3.519908 | TTCGCGCATGCAGATTATTAC | 57.480 | 42.857 | 19.57 | 0.00 | 42.97 | 1.89 |
1590 | 1687 | 3.498018 | ACATTCGCGCATGCAGATTATTA | 59.502 | 39.130 | 18.70 | 1.37 | 42.97 | 0.98 |
1591 | 1688 | 2.291465 | ACATTCGCGCATGCAGATTATT | 59.709 | 40.909 | 18.70 | 0.00 | 42.97 | 1.40 |
1592 | 1689 | 1.875514 | ACATTCGCGCATGCAGATTAT | 59.124 | 42.857 | 18.70 | 5.13 | 42.97 | 1.28 |
1605 | 1702 | 1.468054 | GGATTTGGCACTCACATTCGC | 60.468 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
1626 | 1723 | 3.206150 | GAGAGCACACAGGAAGAAACAA | 58.794 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
1633 | 1730 | 1.837051 | ACCGGAGAGCACACAGGAA | 60.837 | 57.895 | 9.46 | 0.00 | 0.00 | 3.36 |
1635 | 1732 | 2.047844 | CACCGGAGAGCACACAGG | 60.048 | 66.667 | 9.46 | 0.00 | 0.00 | 4.00 |
1654 | 1751 | 2.096909 | CACACACGTGCTAAGTGCTAAC | 60.097 | 50.000 | 17.22 | 0.00 | 42.94 | 2.34 |
1664 | 1761 | 2.253758 | GCATGACCACACACGTGCT | 61.254 | 57.895 | 17.22 | 0.00 | 43.15 | 4.40 |
1689 | 1786 | 0.322546 | TCCTACTCACTCAGCAGCGA | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
1691 | 1788 | 1.181786 | ACTCCTACTCACTCAGCAGC | 58.818 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
1700 | 1803 | 2.256306 | TGCACATGGAACTCCTACTCA | 58.744 | 47.619 | 0.00 | 0.00 | 36.82 | 3.41 |
1728 | 1831 | 3.671928 | GCATCTTGCATGAGTGACAAAAC | 59.328 | 43.478 | 8.40 | 0.00 | 44.26 | 2.43 |
1764 | 1867 | 0.981183 | ACCTCTGGCCAAATACGTGA | 59.019 | 50.000 | 7.01 | 0.00 | 0.00 | 4.35 |
1780 | 1883 | 3.230976 | GGAAAACAGGGAATTCACACCT | 58.769 | 45.455 | 11.02 | 3.06 | 34.19 | 4.00 |
1785 | 1888 | 3.556999 | TGAACGGAAAACAGGGAATTCA | 58.443 | 40.909 | 7.93 | 0.00 | 0.00 | 2.57 |
1790 | 1893 | 2.370519 | TCAGATGAACGGAAAACAGGGA | 59.629 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
1800 | 1903 | 2.185004 | AAACCCTGTCAGATGAACGG | 57.815 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1838 | 1941 | 4.077300 | TGGATGCATTAAGTCTAGCTGG | 57.923 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
1961 | 2064 | 4.837860 | TCCTGCAATTTACAATGGGAAAGT | 59.162 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
1996 | 2099 | 1.155859 | ATGGGCCAAGGAAACTGCA | 59.844 | 52.632 | 11.89 | 0.00 | 42.68 | 4.41 |
2047 | 2150 | 0.975135 | CCATCAACCACCATTGCCAA | 59.025 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2284 | 2387 | 4.074970 | GTCCCAAGGCAATGTATATCAGG | 58.925 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
2389 | 2492 | 3.741476 | GCGTTGAAGGCCAGCTGG | 61.741 | 66.667 | 29.34 | 29.34 | 38.53 | 4.85 |
2533 | 2636 | 4.608170 | ACCCAATACATGATTCCCTTGT | 57.392 | 40.909 | 0.00 | 0.00 | 37.06 | 3.16 |
2887 | 2990 | 1.271271 | GGAATGATGGGCAGAGCTAGG | 60.271 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
2896 | 2999 | 1.469767 | GCGAAAACAGGAATGATGGGC | 60.470 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
3099 | 3202 | 6.777213 | AACTAGTACCTCATTGAGTACCAG | 57.223 | 41.667 | 12.54 | 13.59 | 0.00 | 4.00 |
3209 | 3312 | 7.072202 | AGTTCCCATGATGATACATCTCTTCTT | 59.928 | 37.037 | 11.98 | 0.00 | 0.00 | 2.52 |
3210 | 3313 | 6.558014 | AGTTCCCATGATGATACATCTCTTCT | 59.442 | 38.462 | 11.98 | 1.57 | 0.00 | 2.85 |
3211 | 3314 | 6.649973 | CAGTTCCCATGATGATACATCTCTTC | 59.350 | 42.308 | 11.98 | 0.00 | 0.00 | 2.87 |
3234 | 3337 | 5.728637 | ACTTTTGCCTTCTTATTTCCCAG | 57.271 | 39.130 | 0.00 | 0.00 | 0.00 | 4.45 |
3305 | 3408 | 8.773033 | AGCACATCCAGAATATTTAAGGAAAT | 57.227 | 30.769 | 8.08 | 0.00 | 38.79 | 2.17 |
3338 | 3441 | 3.458118 | ACCAACTAGCCCATTATGCAGTA | 59.542 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
3545 | 3682 | 7.877003 | TGACAACTAGAAACTGAACACAAAAA | 58.123 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
3577 | 3714 | 4.574828 | TGCTTCTTAAACAGTCAACACTCC | 59.425 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
3583 | 3720 | 6.150307 | TGTGTTCTTGCTTCTTAAACAGTCAA | 59.850 | 34.615 | 0.00 | 0.00 | 31.04 | 3.18 |
3641 | 3778 | 4.141574 | GGGTAGCCAATGTTATGGTCTGTA | 60.142 | 45.833 | 5.96 | 0.00 | 42.75 | 2.74 |
3770 | 3911 | 9.624697 | CGGTTTTGTATAAAATCATGGGATATG | 57.375 | 33.333 | 8.44 | 0.00 | 36.84 | 1.78 |
3781 | 3922 | 8.470805 | TGGATGTAATGCGGTTTTGTATAAAAT | 58.529 | 29.630 | 0.43 | 0.00 | 37.56 | 1.82 |
3786 | 3927 | 5.499139 | CTGGATGTAATGCGGTTTTGTAT | 57.501 | 39.130 | 0.00 | 0.00 | 37.56 | 2.29 |
3971 | 4112 | 8.590204 | AGGTTGACCTCTTTTCTTTTAAACAAA | 58.410 | 29.630 | 0.00 | 0.00 | 44.77 | 2.83 |
3997 | 4138 | 3.839778 | TCATACACATATGGACCTCGGA | 58.160 | 45.455 | 7.80 | 0.00 | 39.04 | 4.55 |
3998 | 4139 | 4.021104 | ACATCATACACATATGGACCTCGG | 60.021 | 45.833 | 7.80 | 0.00 | 39.04 | 4.63 |
4036 | 4177 | 6.351711 | CCATAGCCAGGTATTCTGATTCTAGG | 60.352 | 46.154 | 0.00 | 0.00 | 46.18 | 3.02 |
4090 | 4231 | 0.738975 | GCCCTCGAATTACCAAAGGC | 59.261 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4130 | 4271 | 7.894934 | AAGCACTTCTTGTAAACAGAATGGTTG | 60.895 | 37.037 | 0.00 | 0.00 | 39.31 | 3.77 |
4144 | 4285 | 2.037772 | ACCTCATCGAAGCACTTCTTGT | 59.962 | 45.455 | 8.65 | 0.00 | 37.44 | 3.16 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.