Multiple sequence alignment - TraesCS6B01G289500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G289500 chr6B 100.000 3679 0 0 1 3679 520849547 520845869 0.000000e+00 6794.0
1 TraesCS6B01G289500 chr6B 95.690 116 4 1 349 463 5734895 5735010 6.270000e-43 185.0
2 TraesCS6B01G289500 chr6B 94.118 119 5 2 345 462 684144924 684144807 2.920000e-41 180.0
3 TraesCS6B01G289500 chr6D 90.500 2400 81 45 627 2940 345047838 345045500 0.000000e+00 3033.0
4 TraesCS6B01G289500 chr6D 87.237 760 54 16 2934 3667 345045476 345044734 0.000000e+00 826.0
5 TraesCS6B01G289500 chr6D 86.022 186 3 5 457 642 345048015 345047853 1.050000e-40 178.0
6 TraesCS6B01G289500 chr6D 92.742 124 5 3 334 455 81674623 81674744 3.780000e-40 176.0
7 TraesCS6B01G289500 chr6D 86.885 61 6 2 10 69 345048852 345048793 2.370000e-07 67.6
8 TraesCS6B01G289500 chr6A 88.806 2537 97 68 457 2940 485379206 485376804 0.000000e+00 2939.0
9 TraesCS6B01G289500 chr6A 85.602 764 42 27 2932 3667 485376782 485376059 0.000000e+00 739.0
10 TraesCS6B01G289500 chr5A 97.345 113 3 0 346 458 706334494 706334606 3.750000e-45 193.0
11 TraesCS6B01G289500 chr3B 94.355 124 4 3 349 471 673098620 673098741 1.740000e-43 187.0
12 TraesCS6B01G289500 chr5D 96.429 112 4 0 345 456 564839092 564839203 6.270000e-43 185.0
13 TraesCS6B01G289500 chr3D 96.429 112 4 0 348 459 614541799 614541910 6.270000e-43 185.0
14 TraesCS6B01G289500 chr2A 95.690 116 4 1 348 462 3757517 3757402 6.270000e-43 185.0
15 TraesCS6B01G289500 chr1B 96.396 111 4 0 349 459 461239277 461239167 2.260000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G289500 chr6B 520845869 520849547 3678 True 6794.00 6794 100.000 1 3679 1 chr6B.!!$R1 3678
1 TraesCS6B01G289500 chr6D 345044734 345048852 4118 True 1026.15 3033 87.661 10 3667 4 chr6D.!!$R1 3657
2 TraesCS6B01G289500 chr6A 485376059 485379206 3147 True 1839.00 2939 87.204 457 3667 2 chr6A.!!$R1 3210


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 1403 0.672401 TTTTAAGGGGAGCGTGCGAG 60.672 55.0 0.0 0.0 0.0 5.03 F
1032 1597 0.105709 CCTCCTCCTCCTCCTCCTTC 60.106 65.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2654 3275 0.604780 CAGCACAGCACAGCCTTACT 60.605 55.0 0.0 0.0 0.0 2.24 R
2997 3676 0.473694 TGCCTCCCCACTCTTCTTCA 60.474 55.0 0.0 0.0 0.0 3.02 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.976511 TTCGATTATTGACTAAATAAGGATCGT 57.023 29.630 0.00 0.00 42.58 3.73
47 48 9.976511 TCGATTATTGACTAAATAAGGATCGTT 57.023 29.630 5.87 5.87 42.58 3.85
87 121 2.464865 CAGCTCGAAGGATCTAAACCG 58.535 52.381 0.00 0.00 0.00 4.44
94 447 5.585390 TCGAAGGATCTAAACCGTTGATAC 58.415 41.667 0.00 0.00 0.00 2.24
100 453 6.489361 AGGATCTAAACCGTTGATACGTAGAT 59.511 38.462 0.08 8.24 46.20 1.98
102 455 7.961827 GGATCTAAACCGTTGATACGTAGATAG 59.038 40.741 0.08 0.00 46.20 2.08
122 475 1.141858 GAGGTTGTGATCCCTCCATCC 59.858 57.143 4.78 0.00 41.22 3.51
124 477 1.496429 GGTTGTGATCCCTCCATCCAT 59.504 52.381 0.00 0.00 0.00 3.41
129 482 6.467194 GGTTGTGATCCCTCCATCCATAAATA 60.467 42.308 0.00 0.00 0.00 1.40
137 490 6.451340 TCCCTCCATCCATAAATATAAGGCAT 59.549 38.462 0.00 0.00 0.00 4.40
172 525 7.672983 TGAGATTTACTTTGACCATCACTTC 57.327 36.000 0.00 0.00 0.00 3.01
181 576 2.158914 TGACCATCACTTCATATGCGCT 60.159 45.455 9.73 0.00 0.00 5.92
187 582 6.127758 ACCATCACTTCATATGCGCTTTAAAA 60.128 34.615 9.73 0.00 0.00 1.52
197 592 4.603231 TGCGCTTTAAAAAGGTATACGG 57.397 40.909 9.73 0.00 36.53 4.02
200 595 4.780013 GCGCTTTAAAAAGGTATACGGACG 60.780 45.833 0.00 0.00 36.53 4.79
201 596 4.259930 CGCTTTAAAAAGGTATACGGACGG 60.260 45.833 4.71 0.00 36.53 4.79
206 601 5.349061 AAAAAGGTATACGGACGGATTCT 57.651 39.130 0.00 0.00 0.00 2.40
215 610 7.115947 GGTATACGGACGGATTCTTATTTGAAG 59.884 40.741 0.00 0.00 0.00 3.02
217 612 3.560068 CGGACGGATTCTTATTTGAAGGG 59.440 47.826 0.00 0.00 0.00 3.95
222 617 5.880887 ACGGATTCTTATTTGAAGGGAGTTC 59.119 40.000 0.00 0.00 35.48 3.01
289 684 8.965986 TCTTATCGTGGTCAATATAAATCTCG 57.034 34.615 0.00 0.00 0.00 4.04
290 685 8.789762 TCTTATCGTGGTCAATATAAATCTCGA 58.210 33.333 0.00 0.00 0.00 4.04
291 686 9.406828 CTTATCGTGGTCAATATAAATCTCGAA 57.593 33.333 0.00 0.00 0.00 3.71
292 687 9.752961 TTATCGTGGTCAATATAAATCTCGAAA 57.247 29.630 0.00 0.00 0.00 3.46
293 688 8.657074 ATCGTGGTCAATATAAATCTCGAAAA 57.343 30.769 0.00 0.00 0.00 2.29
294 689 8.657074 TCGTGGTCAATATAAATCTCGAAAAT 57.343 30.769 0.00 0.00 0.00 1.82
295 690 9.752961 TCGTGGTCAATATAAATCTCGAAAATA 57.247 29.630 0.00 0.00 0.00 1.40
296 691 9.793245 CGTGGTCAATATAAATCTCGAAAATAC 57.207 33.333 0.00 0.00 0.00 1.89
297 692 9.793245 GTGGTCAATATAAATCTCGAAAATACG 57.207 33.333 0.00 0.00 0.00 3.06
298 693 8.492748 TGGTCAATATAAATCTCGAAAATACGC 58.507 33.333 0.00 0.00 0.00 4.42
299 694 8.492748 GGTCAATATAAATCTCGAAAATACGCA 58.507 33.333 0.00 0.00 0.00 5.24
300 695 9.858247 GTCAATATAAATCTCGAAAATACGCAA 57.142 29.630 0.00 0.00 0.00 4.85
306 701 7.534085 AAATCTCGAAAATACGCAATAGACA 57.466 32.000 0.00 0.00 0.00 3.41
307 702 5.944049 TCTCGAAAATACGCAATAGACAC 57.056 39.130 0.00 0.00 0.00 3.67
308 703 5.647589 TCTCGAAAATACGCAATAGACACT 58.352 37.500 0.00 0.00 0.00 3.55
309 704 6.788243 TCTCGAAAATACGCAATAGACACTA 58.212 36.000 0.00 0.00 0.00 2.74
310 705 6.690098 TCTCGAAAATACGCAATAGACACTAC 59.310 38.462 0.00 0.00 0.00 2.73
311 706 6.324042 TCGAAAATACGCAATAGACACTACA 58.676 36.000 0.00 0.00 0.00 2.74
312 707 6.976349 TCGAAAATACGCAATAGACACTACAT 59.024 34.615 0.00 0.00 0.00 2.29
313 708 7.490079 TCGAAAATACGCAATAGACACTACATT 59.510 33.333 0.00 0.00 0.00 2.71
314 709 7.787935 CGAAAATACGCAATAGACACTACATTC 59.212 37.037 0.00 0.00 0.00 2.67
315 710 8.487313 AAAATACGCAATAGACACTACATTCA 57.513 30.769 0.00 0.00 0.00 2.57
316 711 8.662781 AAATACGCAATAGACACTACATTCAT 57.337 30.769 0.00 0.00 0.00 2.57
317 712 5.973651 ACGCAATAGACACTACATTCATG 57.026 39.130 0.00 0.00 0.00 3.07
318 713 4.811024 ACGCAATAGACACTACATTCATGG 59.189 41.667 0.00 0.00 0.00 3.66
319 714 5.049828 CGCAATAGACACTACATTCATGGA 58.950 41.667 0.00 0.00 0.00 3.41
320 715 5.698089 CGCAATAGACACTACATTCATGGAT 59.302 40.000 0.00 0.00 0.00 3.41
321 716 6.868339 CGCAATAGACACTACATTCATGGATA 59.132 38.462 0.00 0.00 0.00 2.59
322 717 7.062722 CGCAATAGACACTACATTCATGGATAG 59.937 40.741 0.00 0.00 0.00 2.08
323 718 8.090831 GCAATAGACACTACATTCATGGATAGA 58.909 37.037 0.00 0.00 0.00 1.98
324 719 9.636879 CAATAGACACTACATTCATGGATAGAG 57.363 37.037 0.00 0.00 0.00 2.43
325 720 8.948401 ATAGACACTACATTCATGGATAGAGT 57.052 34.615 0.00 0.00 0.00 3.24
326 721 7.048629 AGACACTACATTCATGGATAGAGTG 57.951 40.000 19.29 19.29 39.14 3.51
327 722 6.836007 AGACACTACATTCATGGATAGAGTGA 59.164 38.462 24.52 0.00 37.18 3.41
328 723 7.014134 AGACACTACATTCATGGATAGAGTGAG 59.986 40.741 24.52 8.15 37.18 3.51
329 724 6.609212 ACACTACATTCATGGATAGAGTGAGT 59.391 38.462 24.52 8.67 37.18 3.41
330 725 7.780271 ACACTACATTCATGGATAGAGTGAGTA 59.220 37.037 24.52 6.28 37.18 2.59
331 726 8.633561 CACTACATTCATGGATAGAGTGAGTAA 58.366 37.037 17.25 0.00 36.07 2.24
332 727 9.373450 ACTACATTCATGGATAGAGTGAGTAAT 57.627 33.333 0.00 0.00 0.00 1.89
333 728 9.853555 CTACATTCATGGATAGAGTGAGTAATC 57.146 37.037 0.00 0.00 0.00 1.75
334 729 8.489676 ACATTCATGGATAGAGTGAGTAATCT 57.510 34.615 0.00 0.00 35.14 2.40
335 730 8.932610 ACATTCATGGATAGAGTGAGTAATCTT 58.067 33.333 0.00 0.00 32.72 2.40
336 731 9.775854 CATTCATGGATAGAGTGAGTAATCTTT 57.224 33.333 0.00 0.00 32.72 2.52
338 733 9.605275 TTCATGGATAGAGTGAGTAATCTTTTG 57.395 33.333 0.00 0.00 32.72 2.44
339 734 8.981659 TCATGGATAGAGTGAGTAATCTTTTGA 58.018 33.333 0.00 0.00 32.72 2.69
340 735 9.775854 CATGGATAGAGTGAGTAATCTTTTGAT 57.224 33.333 0.00 0.00 41.73 2.57
347 742 9.220767 AGAGTGAGTAATCTTTTGATAAACACC 57.779 33.333 0.00 0.00 38.40 4.16
360 755 1.725803 AAACACCTACTCCCTCCGTT 58.274 50.000 0.00 0.00 0.00 4.44
362 757 0.964358 ACACCTACTCCCTCCGTTCG 60.964 60.000 0.00 0.00 0.00 3.95
363 758 1.379576 ACCTACTCCCTCCGTTCGG 60.380 63.158 4.74 4.74 0.00 4.30
369 764 1.755380 ACTCCCTCCGTTCGGAATTAG 59.245 52.381 14.79 13.09 33.41 1.73
371 766 2.167900 CTCCCTCCGTTCGGAATTAGTT 59.832 50.000 14.79 0.00 33.41 2.24
377 772 1.722464 CGTTCGGAATTAGTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
387 782 4.944962 TTAGTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
396 791 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
397 792 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
400 795 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
401 796 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
470 961 6.822170 GGAGGGAGTAGTAACAAATACCAAAG 59.178 42.308 0.00 0.00 34.89 2.77
500 991 3.869065 TGGACGAGTAATCCATCCAAAC 58.131 45.455 8.06 0.00 41.47 2.93
501 992 3.517901 TGGACGAGTAATCCATCCAAACT 59.482 43.478 8.06 0.00 41.47 2.66
504 995 5.414765 GGACGAGTAATCCATCCAAACTTTT 59.585 40.000 3.80 0.00 36.15 2.27
641 1162 3.845109 ACCACCACCCCATTTTAATCT 57.155 42.857 0.00 0.00 0.00 2.40
751 1287 3.615224 AACCCCGCGAGTAATTTTAGA 57.385 42.857 8.23 0.00 0.00 2.10
752 1288 3.832615 ACCCCGCGAGTAATTTTAGAT 57.167 42.857 8.23 0.00 0.00 1.98
754 1290 5.280654 ACCCCGCGAGTAATTTTAGATTA 57.719 39.130 8.23 0.00 0.00 1.75
804 1354 4.003788 CCCCGTCTGCGTCCTGTT 62.004 66.667 0.00 0.00 36.15 3.16
805 1355 2.432628 CCCGTCTGCGTCCTGTTC 60.433 66.667 0.00 0.00 36.15 3.18
806 1356 2.432628 CCGTCTGCGTCCTGTTCC 60.433 66.667 0.00 0.00 36.15 3.62
807 1357 2.432628 CGTCTGCGTCCTGTTCCC 60.433 66.667 0.00 0.00 0.00 3.97
846 1403 0.672401 TTTTAAGGGGAGCGTGCGAG 60.672 55.000 0.00 0.00 0.00 5.03
878 1435 2.172483 AATTGGACTCGGCTCACGCT 62.172 55.000 0.00 0.00 43.86 5.07
911 1468 4.567385 GCTCGCGCTGAGGAGGAG 62.567 72.222 23.77 14.45 45.38 3.69
912 1469 3.898509 CTCGCGCTGAGGAGGAGG 61.899 72.222 17.74 0.00 41.29 4.30
913 1470 4.426313 TCGCGCTGAGGAGGAGGA 62.426 66.667 5.56 0.00 0.00 3.71
914 1471 4.200283 CGCGCTGAGGAGGAGGAC 62.200 72.222 5.56 0.00 0.00 3.85
915 1472 4.200283 GCGCTGAGGAGGAGGACG 62.200 72.222 0.00 0.00 0.00 4.79
916 1473 2.438614 CGCTGAGGAGGAGGACGA 60.439 66.667 0.00 0.00 0.00 4.20
917 1474 1.826054 CGCTGAGGAGGAGGACGAT 60.826 63.158 0.00 0.00 0.00 3.73
918 1475 1.739049 GCTGAGGAGGAGGACGATG 59.261 63.158 0.00 0.00 0.00 3.84
919 1476 1.739049 CTGAGGAGGAGGACGATGC 59.261 63.158 0.00 0.00 0.00 3.91
920 1477 1.743321 CTGAGGAGGAGGACGATGCC 61.743 65.000 0.00 0.00 0.00 4.40
921 1478 2.444895 AGGAGGAGGACGATGCCC 60.445 66.667 0.00 0.00 0.00 5.36
922 1479 2.444895 GGAGGAGGACGATGCCCT 60.445 66.667 0.00 0.00 36.57 5.19
926 1483 3.635510 GAGGACGATGCCCTCCTT 58.364 61.111 0.00 0.00 43.37 3.36
1005 1562 2.084681 CCCGTCGTCCGTTTCTTCG 61.085 63.158 0.00 0.00 33.66 3.79
1006 1563 1.370900 CCGTCGTCCGTTTCTTCGT 60.371 57.895 0.00 0.00 33.66 3.85
1009 1566 1.763634 GTCGTCCGTTTCTTCGTTCT 58.236 50.000 0.00 0.00 0.00 3.01
1015 1572 2.626743 TCCGTTTCTTCGTTCTTCTCCT 59.373 45.455 0.00 0.00 0.00 3.69
1025 1590 2.384828 GTTCTTCTCCTCCTCCTCCTC 58.615 57.143 0.00 0.00 0.00 3.71
1026 1591 0.930726 TCTTCTCCTCCTCCTCCTCC 59.069 60.000 0.00 0.00 0.00 4.30
1027 1592 0.933700 CTTCTCCTCCTCCTCCTCCT 59.066 60.000 0.00 0.00 0.00 3.69
1028 1593 0.930726 TTCTCCTCCTCCTCCTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
1029 1594 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
1030 1595 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1031 1596 0.556380 TCCTCCTCCTCCTCCTCCTT 60.556 60.000 0.00 0.00 0.00 3.36
1032 1597 0.105709 CCTCCTCCTCCTCCTCCTTC 60.106 65.000 0.00 0.00 0.00 3.46
1033 1598 0.933700 CTCCTCCTCCTCCTCCTTCT 59.066 60.000 0.00 0.00 0.00 2.85
1198 1782 2.239439 AGAGGTGACCCGGAGAGGA 61.239 63.158 0.73 0.00 45.00 3.71
1230 1826 3.749064 CCCAAGCAGCAGCAGCAG 61.749 66.667 12.92 3.98 45.49 4.24
1239 1835 2.962569 CAGCAGCAGCAGCAACAT 59.037 55.556 12.92 0.00 45.49 2.71
1240 1836 1.154016 CAGCAGCAGCAGCAACATC 60.154 57.895 12.92 0.00 45.49 3.06
1241 1837 1.602605 AGCAGCAGCAGCAACATCA 60.603 52.632 12.92 0.00 45.49 3.07
1337 1933 1.820906 GCGCCTGATTGCCTGATGA 60.821 57.895 0.00 0.00 0.00 2.92
1393 1992 2.040947 TGGATTGTGACATGGCTTGGTA 59.959 45.455 0.00 0.00 0.00 3.25
1401 2000 0.808755 CATGGCTTGGTACGGTTTCC 59.191 55.000 0.00 0.00 0.00 3.13
1612 2217 0.612453 TGGCATTGGATGAGCAGCAA 60.612 50.000 0.00 0.00 0.00 3.91
1630 2235 5.122869 GCAGCAACAGAGACAGATTAATTCA 59.877 40.000 0.00 0.00 0.00 2.57
1651 2256 1.213799 GTGTTACCCGTCCTCGTCC 59.786 63.158 0.00 0.00 35.01 4.79
1747 2352 2.969950 CCGGGACCAGGTAATTCATCTA 59.030 50.000 1.83 0.00 0.00 1.98
1775 2380 1.577328 CCATGCCACGACAGTCCAAC 61.577 60.000 0.00 0.00 0.00 3.77
1902 2507 2.594303 CTGGTGGCGGCAGACAAA 60.594 61.111 13.91 0.00 36.97 2.83
2148 2753 2.202623 GCCGAATCGTGCTCGTCT 60.203 61.111 8.17 0.00 38.33 4.18
2367 2972 4.154347 CAGAGCTGTCCTCGGGGC 62.154 72.222 0.00 0.00 45.54 5.80
2371 2976 4.554036 GCTGTCCTCGGGGCCATC 62.554 72.222 4.39 0.00 0.00 3.51
2372 2977 3.866582 CTGTCCTCGGGGCCATCC 61.867 72.222 4.39 0.00 0.00 3.51
2397 3006 4.082523 CCATCCCGTGCCGTGAGT 62.083 66.667 0.00 0.00 0.00 3.41
2436 3045 1.266989 GGCGCCATAGCTTATTCCAAC 59.733 52.381 24.80 0.00 36.60 3.77
2652 3273 5.103000 CGTTCTTTCTCCGATCATTACTGT 58.897 41.667 0.00 0.00 0.00 3.55
2654 3275 6.750501 CGTTCTTTCTCCGATCATTACTGTTA 59.249 38.462 0.00 0.00 0.00 2.41
2659 3280 9.239002 CTTTCTCCGATCATTACTGTTAGTAAG 57.761 37.037 7.41 1.46 43.17 2.34
2666 3287 5.175859 TCATTACTGTTAGTAAGGCTGTGC 58.824 41.667 8.13 0.00 43.17 4.57
2667 3288 4.884668 TTACTGTTAGTAAGGCTGTGCT 57.115 40.909 0.00 0.00 35.89 4.40
2668 3289 3.045601 ACTGTTAGTAAGGCTGTGCTG 57.954 47.619 0.00 0.00 0.00 4.41
2669 3290 2.368875 ACTGTTAGTAAGGCTGTGCTGT 59.631 45.455 0.00 0.00 0.00 4.40
2670 3291 2.738846 CTGTTAGTAAGGCTGTGCTGTG 59.261 50.000 0.00 0.00 0.00 3.66
2671 3292 1.464997 GTTAGTAAGGCTGTGCTGTGC 59.535 52.381 0.00 0.00 0.00 4.57
2672 3293 0.976641 TAGTAAGGCTGTGCTGTGCT 59.023 50.000 0.00 0.00 0.00 4.40
2675 3296 0.684535 TAAGGCTGTGCTGTGCTGTA 59.315 50.000 0.00 0.00 0.00 2.74
2686 3307 3.509967 TGCTGTGCTGTACTGTACTGTAT 59.490 43.478 21.03 0.00 0.00 2.29
2712 3333 3.565482 GGTTGCTTGTGATGTTCTCTTCA 59.435 43.478 0.00 0.00 0.00 3.02
2741 3365 5.854866 CGAAATGACGAATTAGCGGAGTATA 59.145 40.000 0.00 0.00 35.12 1.47
2747 3371 5.759963 ACGAATTAGCGGAGTATAAGACTG 58.240 41.667 0.00 0.00 34.75 3.51
2756 3380 5.333513 CGGAGTATAAGACTGGATAATCGC 58.666 45.833 0.00 0.00 39.06 4.58
2785 3409 1.229428 CAAGTGATCGCAACCACTGT 58.771 50.000 9.33 0.00 42.25 3.55
2793 3417 2.912624 GCAACCACTGTGCTGCTCC 61.913 63.158 19.70 0.00 0.00 4.70
2794 3418 2.281070 AACCACTGTGCTGCTCCG 60.281 61.111 1.29 0.00 0.00 4.63
2795 3419 3.106986 AACCACTGTGCTGCTCCGT 62.107 57.895 1.29 0.00 0.00 4.69
2796 3420 1.754380 AACCACTGTGCTGCTCCGTA 61.754 55.000 1.29 0.00 0.00 4.02
2804 3433 2.808315 CTGCTCCGTATGGCGTCT 59.192 61.111 0.00 0.00 39.32 4.18
2813 3442 3.069016 TCCGTATGGCGTCTATTTGATGT 59.931 43.478 0.00 0.00 39.32 3.06
2916 3565 2.972505 CGTCCTGTGCCGTGCTTT 60.973 61.111 0.00 0.00 0.00 3.51
3010 3689 1.277557 CAGGGTCTGAAGAAGAGTGGG 59.722 57.143 0.00 0.00 34.84 4.61
3043 3727 4.827087 ATGGCAGCGGCGTCAGAG 62.827 66.667 9.37 0.00 42.47 3.35
3211 3899 2.330393 GCGTAGTGATAGCCGCGA 59.670 61.111 8.23 0.00 36.53 5.87
3216 3904 0.750546 TAGTGATAGCCGCGAGTGGT 60.751 55.000 8.23 0.00 0.00 4.16
3364 4061 0.243636 CGCCCCTTTTACTTTGGCAG 59.756 55.000 0.00 0.00 42.27 4.85
3387 4089 0.034896 AGGAAAGCCATCGTCGTTGT 59.965 50.000 2.82 0.00 36.29 3.32
3413 4115 1.264557 CGGCGATCTTCACGTATCTCT 59.735 52.381 0.00 0.00 0.00 3.10
3414 4116 2.663334 CGGCGATCTTCACGTATCTCTC 60.663 54.545 0.00 0.00 0.00 3.20
3415 4117 2.290916 GGCGATCTTCACGTATCTCTCA 59.709 50.000 0.00 0.00 0.00 3.27
3430 4135 3.784338 TCTCTCACGTTGTTTTACGGTT 58.216 40.909 0.00 0.00 45.44 4.44
3461 4166 2.276201 CGCTTTATGTCCCACGATTGA 58.724 47.619 0.00 0.00 0.00 2.57
3462 4167 2.872245 CGCTTTATGTCCCACGATTGAT 59.128 45.455 0.00 0.00 0.00 2.57
3526 4245 1.145377 ATAAATTCGCGCCCGGAGT 59.855 52.632 0.73 0.00 34.56 3.85
3605 4329 4.298261 TCGACACCGGTACCCCCA 62.298 66.667 6.87 0.00 36.24 4.96
3629 4357 2.488820 GACGAGTACCACTCCGGC 59.511 66.667 0.00 0.00 42.12 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.817296 TCGAATGTGAATATTAGCTTGCACT 59.183 36.000 0.00 0.00 0.00 4.40
1 2 6.048073 TCGAATGTGAATATTAGCTTGCAC 57.952 37.500 0.00 0.00 0.00 4.57
2 3 6.866010 ATCGAATGTGAATATTAGCTTGCA 57.134 33.333 0.00 0.00 0.00 4.08
3 4 9.831737 AATAATCGAATGTGAATATTAGCTTGC 57.168 29.630 0.00 0.00 0.00 4.01
52 53 6.587608 CCTTCGAGCTGCAATTTAGAAAAATT 59.412 34.615 1.02 0.00 44.35 1.82
53 54 6.071952 TCCTTCGAGCTGCAATTTAGAAAAAT 60.072 34.615 1.02 0.00 36.87 1.82
54 55 5.240623 TCCTTCGAGCTGCAATTTAGAAAAA 59.759 36.000 1.02 0.00 0.00 1.94
59 93 4.125703 AGATCCTTCGAGCTGCAATTTAG 58.874 43.478 1.02 0.00 32.16 1.85
62 96 2.706339 AGATCCTTCGAGCTGCAATT 57.294 45.000 1.02 0.00 32.16 2.32
72 106 4.440103 CGTATCAACGGTTTAGATCCTTCG 59.560 45.833 0.00 0.00 45.50 3.79
87 121 7.024340 TCACAACCTCTATCTACGTATCAAC 57.976 40.000 0.00 0.00 0.00 3.18
94 447 4.145807 AGGGATCACAACCTCTATCTACG 58.854 47.826 0.00 0.00 28.88 3.51
144 497 8.352942 AGTGATGGTCAAAGTAAATCTCAAAAC 58.647 33.333 0.00 0.00 0.00 2.43
161 514 2.487934 AGCGCATATGAAGTGATGGTC 58.512 47.619 11.47 0.00 0.00 4.02
172 525 6.795114 CCGTATACCTTTTTAAAGCGCATATG 59.205 38.462 11.47 0.00 34.69 1.78
181 576 7.330262 AGAATCCGTCCGTATACCTTTTTAAA 58.670 34.615 0.00 0.00 0.00 1.52
187 582 6.661304 AATAAGAATCCGTCCGTATACCTT 57.339 37.500 0.00 0.00 0.00 3.50
197 592 5.429130 ACTCCCTTCAAATAAGAATCCGTC 58.571 41.667 0.00 0.00 0.00 4.79
200 595 6.427441 AGGAACTCCCTTCAAATAAGAATCC 58.573 40.000 0.00 0.00 44.85 3.01
263 658 9.574458 CGAGATTTATATTGACCACGATAAGAT 57.426 33.333 0.00 0.00 0.00 2.40
264 659 8.789762 TCGAGATTTATATTGACCACGATAAGA 58.210 33.333 0.00 0.00 0.00 2.10
265 660 8.965986 TCGAGATTTATATTGACCACGATAAG 57.034 34.615 0.00 0.00 0.00 1.73
266 661 9.752961 TTTCGAGATTTATATTGACCACGATAA 57.247 29.630 0.00 0.00 0.00 1.75
267 662 9.752961 TTTTCGAGATTTATATTGACCACGATA 57.247 29.630 0.00 0.00 0.00 2.92
268 663 8.657074 TTTTCGAGATTTATATTGACCACGAT 57.343 30.769 0.00 0.00 0.00 3.73
269 664 8.657074 ATTTTCGAGATTTATATTGACCACGA 57.343 30.769 0.00 0.00 0.00 4.35
270 665 9.793245 GTATTTTCGAGATTTATATTGACCACG 57.207 33.333 0.00 0.00 0.00 4.94
271 666 9.793245 CGTATTTTCGAGATTTATATTGACCAC 57.207 33.333 0.00 0.00 0.00 4.16
272 667 8.492748 GCGTATTTTCGAGATTTATATTGACCA 58.507 33.333 0.00 0.00 0.00 4.02
273 668 8.492748 TGCGTATTTTCGAGATTTATATTGACC 58.507 33.333 0.00 0.00 0.00 4.02
274 669 9.858247 TTGCGTATTTTCGAGATTTATATTGAC 57.142 29.630 0.00 0.00 0.00 3.18
280 675 9.256477 TGTCTATTGCGTATTTTCGAGATTTAT 57.744 29.630 0.00 0.00 0.00 1.40
281 676 8.537223 GTGTCTATTGCGTATTTTCGAGATTTA 58.463 33.333 0.00 0.00 0.00 1.40
282 677 7.277981 AGTGTCTATTGCGTATTTTCGAGATTT 59.722 33.333 0.00 0.00 0.00 2.17
283 678 6.757010 AGTGTCTATTGCGTATTTTCGAGATT 59.243 34.615 0.00 0.00 0.00 2.40
284 679 6.273825 AGTGTCTATTGCGTATTTTCGAGAT 58.726 36.000 0.00 0.00 0.00 2.75
285 680 5.647589 AGTGTCTATTGCGTATTTTCGAGA 58.352 37.500 0.00 0.00 0.00 4.04
286 681 5.950965 AGTGTCTATTGCGTATTTTCGAG 57.049 39.130 0.00 0.00 0.00 4.04
287 682 6.324042 TGTAGTGTCTATTGCGTATTTTCGA 58.676 36.000 0.00 0.00 0.00 3.71
288 683 6.563398 TGTAGTGTCTATTGCGTATTTTCG 57.437 37.500 0.00 0.00 0.00 3.46
289 684 8.600625 TGAATGTAGTGTCTATTGCGTATTTTC 58.399 33.333 0.00 0.00 0.00 2.29
290 685 8.487313 TGAATGTAGTGTCTATTGCGTATTTT 57.513 30.769 0.00 0.00 0.00 1.82
291 686 8.551205 CATGAATGTAGTGTCTATTGCGTATTT 58.449 33.333 0.00 0.00 0.00 1.40
292 687 7.171508 CCATGAATGTAGTGTCTATTGCGTATT 59.828 37.037 0.00 0.00 0.00 1.89
293 688 6.646653 CCATGAATGTAGTGTCTATTGCGTAT 59.353 38.462 0.00 0.00 0.00 3.06
294 689 5.983118 CCATGAATGTAGTGTCTATTGCGTA 59.017 40.000 0.00 0.00 0.00 4.42
295 690 4.811024 CCATGAATGTAGTGTCTATTGCGT 59.189 41.667 0.00 0.00 0.00 5.24
296 691 5.049828 TCCATGAATGTAGTGTCTATTGCG 58.950 41.667 0.00 0.00 0.00 4.85
297 692 8.090831 TCTATCCATGAATGTAGTGTCTATTGC 58.909 37.037 0.00 0.00 0.00 3.56
298 693 9.636879 CTCTATCCATGAATGTAGTGTCTATTG 57.363 37.037 0.00 0.00 0.00 1.90
299 694 9.373450 ACTCTATCCATGAATGTAGTGTCTATT 57.627 33.333 0.00 0.00 0.00 1.73
300 695 8.801299 CACTCTATCCATGAATGTAGTGTCTAT 58.199 37.037 0.00 0.00 0.00 1.98
301 696 7.998964 TCACTCTATCCATGAATGTAGTGTCTA 59.001 37.037 13.53 0.00 35.68 2.59
302 697 6.836007 TCACTCTATCCATGAATGTAGTGTCT 59.164 38.462 13.53 0.00 35.68 3.41
303 698 7.043961 TCACTCTATCCATGAATGTAGTGTC 57.956 40.000 13.53 0.00 35.68 3.67
304 699 6.609212 ACTCACTCTATCCATGAATGTAGTGT 59.391 38.462 13.53 6.50 35.68 3.55
305 700 7.048629 ACTCACTCTATCCATGAATGTAGTG 57.951 40.000 0.00 2.80 35.54 2.74
306 701 8.768501 TTACTCACTCTATCCATGAATGTAGT 57.231 34.615 0.00 0.00 0.00 2.73
307 702 9.853555 GATTACTCACTCTATCCATGAATGTAG 57.146 37.037 0.00 0.00 0.00 2.74
308 703 9.593565 AGATTACTCACTCTATCCATGAATGTA 57.406 33.333 0.00 0.00 0.00 2.29
309 704 8.489676 AGATTACTCACTCTATCCATGAATGT 57.510 34.615 0.00 0.00 0.00 2.71
310 705 9.775854 AAAGATTACTCACTCTATCCATGAATG 57.224 33.333 0.00 0.00 0.00 2.67
312 707 9.605275 CAAAAGATTACTCACTCTATCCATGAA 57.395 33.333 0.00 0.00 0.00 2.57
313 708 8.981659 TCAAAAGATTACTCACTCTATCCATGA 58.018 33.333 0.00 0.00 0.00 3.07
314 709 9.775854 ATCAAAAGATTACTCACTCTATCCATG 57.224 33.333 0.00 0.00 0.00 3.66
321 716 9.220767 GGTGTTTATCAAAAGATTACTCACTCT 57.779 33.333 0.00 0.00 0.00 3.24
322 717 9.220767 AGGTGTTTATCAAAAGATTACTCACTC 57.779 33.333 0.00 0.00 0.00 3.51
327 722 9.668497 GGAGTAGGTGTTTATCAAAAGATTACT 57.332 33.333 0.00 0.00 30.61 2.24
328 723 8.890718 GGGAGTAGGTGTTTATCAAAAGATTAC 58.109 37.037 0.00 0.00 0.00 1.89
329 724 8.832735 AGGGAGTAGGTGTTTATCAAAAGATTA 58.167 33.333 0.00 0.00 0.00 1.75
330 725 7.699878 AGGGAGTAGGTGTTTATCAAAAGATT 58.300 34.615 0.00 0.00 0.00 2.40
331 726 7.272144 AGGGAGTAGGTGTTTATCAAAAGAT 57.728 36.000 0.00 0.00 0.00 2.40
332 727 6.296259 GGAGGGAGTAGGTGTTTATCAAAAGA 60.296 42.308 0.00 0.00 0.00 2.52
333 728 5.880887 GGAGGGAGTAGGTGTTTATCAAAAG 59.119 44.000 0.00 0.00 0.00 2.27
334 729 5.570034 CGGAGGGAGTAGGTGTTTATCAAAA 60.570 44.000 0.00 0.00 0.00 2.44
335 730 4.081309 CGGAGGGAGTAGGTGTTTATCAAA 60.081 45.833 0.00 0.00 0.00 2.69
336 731 3.449737 CGGAGGGAGTAGGTGTTTATCAA 59.550 47.826 0.00 0.00 0.00 2.57
337 732 3.028850 CGGAGGGAGTAGGTGTTTATCA 58.971 50.000 0.00 0.00 0.00 2.15
338 733 3.029570 ACGGAGGGAGTAGGTGTTTATC 58.970 50.000 0.00 0.00 0.00 1.75
339 734 3.111741 ACGGAGGGAGTAGGTGTTTAT 57.888 47.619 0.00 0.00 0.00 1.40
340 735 2.610438 ACGGAGGGAGTAGGTGTTTA 57.390 50.000 0.00 0.00 0.00 2.01
341 736 1.622312 GAACGGAGGGAGTAGGTGTTT 59.378 52.381 0.00 0.00 0.00 2.83
347 742 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
360 755 3.306917 TTCTGCGACAACTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
362 757 4.394920 TCCATTTCTGCGACAACTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
363 758 5.545658 TCCATTTCTGCGACAACTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
369 764 4.572389 AGATACATCCATTTCTGCGACAAC 59.428 41.667 0.00 0.00 0.00 3.32
371 766 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
405 800 8.455682 TGTCTCGGAAATGGATGTATTTAAAAC 58.544 33.333 0.00 0.00 30.78 2.43
406 801 8.568676 TGTCTCGGAAATGGATGTATTTAAAA 57.431 30.769 0.00 0.00 30.78 1.52
408 803 7.827236 ACTTGTCTCGGAAATGGATGTATTTAA 59.173 33.333 0.00 0.00 30.78 1.52
411 806 5.745227 ACTTGTCTCGGAAATGGATGTATT 58.255 37.500 0.00 0.00 0.00 1.89
415 810 6.510157 CGAATTACTTGTCTCGGAAATGGATG 60.510 42.308 0.00 0.00 0.00 3.51
425 820 2.597305 CCGTTCCGAATTACTTGTCTCG 59.403 50.000 0.00 0.00 0.00 4.04
427 822 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
455 850 5.293560 TGCTTTGGCTTTGGTATTTGTTAC 58.706 37.500 0.00 0.00 39.59 2.50
470 961 1.448985 TTACTCGTCCATGCTTTGGC 58.551 50.000 1.73 0.00 46.01 4.52
497 988 5.841810 TCGCATCCAATCTTTCAAAAGTTT 58.158 33.333 2.63 0.00 37.31 2.66
498 989 5.452078 TCGCATCCAATCTTTCAAAAGTT 57.548 34.783 2.63 0.00 37.31 2.66
499 990 5.452078 TTCGCATCCAATCTTTCAAAAGT 57.548 34.783 2.63 0.00 37.31 2.66
500 991 4.325472 GCTTCGCATCCAATCTTTCAAAAG 59.675 41.667 0.00 0.00 37.36 2.27
501 992 4.022068 AGCTTCGCATCCAATCTTTCAAAA 60.022 37.500 0.00 0.00 0.00 2.44
504 995 2.715046 AGCTTCGCATCCAATCTTTCA 58.285 42.857 0.00 0.00 0.00 2.69
641 1162 2.542020 TTCTTGACGTCAATGCAGGA 57.458 45.000 29.79 20.10 35.02 3.86
682 1204 3.098377 GGGCGGTTAAAATTAGGGGAAA 58.902 45.455 0.00 0.00 0.00 3.13
794 1334 2.747686 GGAAGGGAACAGGACGCA 59.252 61.111 0.00 0.00 0.00 5.24
801 1351 0.768622 ACATGGAACGGAAGGGAACA 59.231 50.000 0.00 0.00 0.00 3.18
803 1353 1.003118 CTCACATGGAACGGAAGGGAA 59.997 52.381 0.00 0.00 0.00 3.97
804 1354 0.613260 CTCACATGGAACGGAAGGGA 59.387 55.000 0.00 0.00 0.00 4.20
805 1355 0.613260 TCTCACATGGAACGGAAGGG 59.387 55.000 0.00 0.00 0.00 3.95
806 1356 1.406069 CCTCTCACATGGAACGGAAGG 60.406 57.143 0.00 0.00 0.00 3.46
807 1357 1.276421 ACCTCTCACATGGAACGGAAG 59.724 52.381 0.00 0.00 0.00 3.46
846 1403 4.114997 CAATTCCGCGCACCCACC 62.115 66.667 8.75 0.00 0.00 4.61
898 1455 4.200283 CGTCCTCCTCCTCAGCGC 62.200 72.222 0.00 0.00 0.00 5.92
903 1460 2.503382 GGGCATCGTCCTCCTCCTC 61.503 68.421 0.00 0.00 0.00 3.71
911 1468 1.343069 ATAGAAGGAGGGCATCGTCC 58.657 55.000 0.00 0.00 45.60 4.79
912 1469 4.602340 TTAATAGAAGGAGGGCATCGTC 57.398 45.455 0.00 0.00 0.00 4.20
913 1470 5.123936 GTTTTAATAGAAGGAGGGCATCGT 58.876 41.667 0.00 0.00 0.00 3.73
914 1471 4.515567 GGTTTTAATAGAAGGAGGGCATCG 59.484 45.833 0.00 0.00 0.00 3.84
915 1472 5.299531 GTGGTTTTAATAGAAGGAGGGCATC 59.700 44.000 0.00 0.00 0.00 3.91
916 1473 5.201243 GTGGTTTTAATAGAAGGAGGGCAT 58.799 41.667 0.00 0.00 0.00 4.40
917 1474 4.595986 GTGGTTTTAATAGAAGGAGGGCA 58.404 43.478 0.00 0.00 0.00 5.36
918 1475 3.626217 CGTGGTTTTAATAGAAGGAGGGC 59.374 47.826 0.00 0.00 0.00 5.19
919 1476 5.093849 TCGTGGTTTTAATAGAAGGAGGG 57.906 43.478 0.00 0.00 0.00 4.30
920 1477 5.581085 CACTCGTGGTTTTAATAGAAGGAGG 59.419 44.000 0.00 0.00 0.00 4.30
921 1478 5.581085 CCACTCGTGGTTTTAATAGAAGGAG 59.419 44.000 7.93 0.00 45.53 3.69
922 1479 5.484715 CCACTCGTGGTTTTAATAGAAGGA 58.515 41.667 7.93 0.00 45.53 3.36
923 1480 5.796350 CCACTCGTGGTTTTAATAGAAGG 57.204 43.478 7.93 0.00 45.53 3.46
1005 1562 2.384828 GAGGAGGAGGAGGAGAAGAAC 58.615 57.143 0.00 0.00 0.00 3.01
1006 1563 1.289530 GGAGGAGGAGGAGGAGAAGAA 59.710 57.143 0.00 0.00 0.00 2.52
1009 1566 0.930726 GAGGAGGAGGAGGAGGAGAA 59.069 60.000 0.00 0.00 0.00 2.87
1015 1572 1.398799 AAGAAGGAGGAGGAGGAGGA 58.601 55.000 0.00 0.00 0.00 3.71
1025 1590 5.888161 AGCCATTGTTATGTTAAGAAGGAGG 59.112 40.000 0.00 0.00 0.00 4.30
1026 1591 6.375455 ACAGCCATTGTTATGTTAAGAAGGAG 59.625 38.462 0.00 0.00 36.31 3.69
1027 1592 6.150976 CACAGCCATTGTTATGTTAAGAAGGA 59.849 38.462 0.00 0.00 38.16 3.36
1028 1593 6.324819 CACAGCCATTGTTATGTTAAGAAGG 58.675 40.000 0.00 0.00 38.16 3.46
1029 1594 5.801947 GCACAGCCATTGTTATGTTAAGAAG 59.198 40.000 0.00 0.00 38.16 2.85
1030 1595 5.242615 TGCACAGCCATTGTTATGTTAAGAA 59.757 36.000 0.00 0.00 38.16 2.52
1031 1596 4.764308 TGCACAGCCATTGTTATGTTAAGA 59.236 37.500 0.00 0.00 38.16 2.10
1032 1597 5.058149 TGCACAGCCATTGTTATGTTAAG 57.942 39.130 0.00 0.00 38.16 1.85
1033 1598 4.082300 CCTGCACAGCCATTGTTATGTTAA 60.082 41.667 0.00 0.00 38.16 2.01
1198 1782 3.083997 GGGCAGGTCCATCTCCGT 61.084 66.667 0.00 0.00 36.21 4.69
1203 1787 2.356278 TGCTTGGGCAGGTCCATC 59.644 61.111 0.00 0.00 44.28 3.51
1231 1827 0.100682 GGATGCTGCTGATGTTGCTG 59.899 55.000 0.00 0.00 0.00 4.41
1232 1828 1.374343 CGGATGCTGCTGATGTTGCT 61.374 55.000 0.00 0.00 0.00 3.91
1233 1829 1.063649 CGGATGCTGCTGATGTTGC 59.936 57.895 0.00 0.00 0.00 4.17
1234 1830 1.063649 GCGGATGCTGCTGATGTTG 59.936 57.895 0.00 0.00 38.39 3.33
1235 1831 1.374343 CTGCGGATGCTGCTGATGTT 61.374 55.000 0.00 0.00 43.34 2.71
1236 1832 1.818363 CTGCGGATGCTGCTGATGT 60.818 57.895 0.00 0.00 43.34 3.06
1237 1833 3.023118 CTGCGGATGCTGCTGATG 58.977 61.111 0.00 0.00 43.34 3.07
1372 1971 1.203038 ACCAAGCCATGTCACAATCCA 60.203 47.619 0.00 0.00 0.00 3.41
1393 1992 2.281761 CTGGCTGCAGGAAACCGT 60.282 61.111 17.12 0.00 0.00 4.83
1401 2000 2.110967 CGATTCCCACTGGCTGCAG 61.111 63.158 10.11 10.11 0.00 4.41
1612 2217 8.627208 AACACAATGAATTAATCTGTCTCTGT 57.373 30.769 0.00 0.00 0.00 3.41
1630 2235 0.971386 ACGAGGACGGGTAACACAAT 59.029 50.000 0.00 0.00 44.46 2.71
1896 2501 2.509336 CGCGAGGCCGATTTGTCT 60.509 61.111 0.00 0.00 38.22 3.41
2025 2630 3.386237 GTGGCCTGCTCCGAGAGT 61.386 66.667 3.32 0.00 31.39 3.24
2148 2753 2.753966 GCGAGGGTCTACGTACGCA 61.754 63.158 16.72 0.23 44.29 5.24
2367 2972 2.421739 GATGGACGACCGGGATGG 59.578 66.667 6.32 0.00 46.41 3.51
2368 2973 2.421739 GGATGGACGACCGGGATG 59.578 66.667 6.32 0.00 39.42 3.51
2369 2974 2.842936 GGGATGGACGACCGGGAT 60.843 66.667 6.32 0.00 39.42 3.85
2374 2979 4.832608 GGCACGGGATGGACGACC 62.833 72.222 0.00 0.00 34.93 4.79
2412 3021 2.623416 GGAATAAGCTATGGCGCCTTTT 59.377 45.455 29.70 14.99 44.37 2.27
2436 3045 8.345565 CCATTTTAGGACTATTTTCTCCATTCG 58.654 37.037 0.00 0.00 0.00 3.34
2652 3273 1.347707 AGCACAGCACAGCCTTACTAA 59.652 47.619 0.00 0.00 0.00 2.24
2654 3275 0.604780 CAGCACAGCACAGCCTTACT 60.605 55.000 0.00 0.00 0.00 2.24
2659 3280 1.302033 AGTACAGCACAGCACAGCC 60.302 57.895 0.00 0.00 0.00 4.85
2666 3287 5.310720 TCATACAGTACAGTACAGCACAG 57.689 43.478 13.37 0.00 0.00 3.66
2667 3288 4.157840 CCTCATACAGTACAGTACAGCACA 59.842 45.833 13.37 0.00 0.00 4.57
2668 3289 4.440250 CCCTCATACAGTACAGTACAGCAC 60.440 50.000 13.37 0.00 0.00 4.40
2669 3290 3.699538 CCCTCATACAGTACAGTACAGCA 59.300 47.826 13.37 0.00 0.00 4.41
2670 3291 3.700038 ACCCTCATACAGTACAGTACAGC 59.300 47.826 13.37 0.00 0.00 4.40
2671 3292 5.651530 CAACCCTCATACAGTACAGTACAG 58.348 45.833 13.37 7.52 0.00 2.74
2672 3293 4.081862 GCAACCCTCATACAGTACAGTACA 60.082 45.833 13.37 0.00 0.00 2.90
2675 3296 3.173965 AGCAACCCTCATACAGTACAGT 58.826 45.455 0.00 0.00 0.00 3.55
2686 3307 2.158623 AGAACATCACAAGCAACCCTCA 60.159 45.455 0.00 0.00 0.00 3.86
2712 3333 4.399978 CGCTAATTCGTCATTTCGGTTTT 58.600 39.130 0.00 0.00 0.00 2.43
2741 3365 3.627395 TTGGTGCGATTATCCAGTCTT 57.373 42.857 0.00 0.00 32.63 3.01
2747 3371 2.475200 GCAGTTTGGTGCGATTATCC 57.525 50.000 0.00 0.00 32.74 2.59
2756 3380 1.664016 GCGATCACTTGCAGTTTGGTG 60.664 52.381 0.00 0.00 0.00 4.17
2794 3418 4.449068 CCTCACATCAAATAGACGCCATAC 59.551 45.833 0.00 0.00 0.00 2.39
2795 3419 4.631131 CCTCACATCAAATAGACGCCATA 58.369 43.478 0.00 0.00 0.00 2.74
2796 3420 3.470709 CCTCACATCAAATAGACGCCAT 58.529 45.455 0.00 0.00 0.00 4.40
2804 3433 1.378531 GCCACGCCTCACATCAAATA 58.621 50.000 0.00 0.00 0.00 1.40
2886 3515 2.508663 GGACGCGCACTCCTAACC 60.509 66.667 5.73 0.00 0.00 2.85
2888 3517 2.273179 ACAGGACGCGCACTCCTAA 61.273 57.895 20.45 0.00 35.83 2.69
2889 3518 2.675423 ACAGGACGCGCACTCCTA 60.675 61.111 20.45 0.00 35.83 2.94
2916 3565 2.980562 CCGAAACGGCCGAATCATA 58.019 52.632 35.90 0.00 41.17 2.15
2997 3676 0.473694 TGCCTCCCCACTCTTCTTCA 60.474 55.000 0.00 0.00 0.00 3.02
3026 3705 4.827087 CTCTGACGCCGCTGCCAT 62.827 66.667 0.00 0.00 0.00 4.40
3211 3899 4.599500 ACAGGAGGGCCCACCACT 62.599 66.667 36.40 19.94 43.89 4.00
3276 3964 2.290745 GGGGGTAGGAGGCTGGAT 59.709 66.667 0.00 0.00 0.00 3.41
3334 4028 1.777941 AAAGGGGCGGTAAACAAACA 58.222 45.000 0.00 0.00 0.00 2.83
3364 4061 1.804748 ACGACGATGGCTTTCCTTTTC 59.195 47.619 0.00 0.00 0.00 2.29
3387 4089 0.031585 CGTGAAGATCGCCGGGATAA 59.968 55.000 2.18 0.00 34.82 1.75
3413 4115 3.311048 GGGTTAACCGTAAAACAACGTGA 59.689 43.478 18.39 0.00 41.27 4.35
3414 4116 3.547813 GGGGTTAACCGTAAAACAACGTG 60.548 47.826 18.39 0.00 41.27 4.49
3415 4117 2.616376 GGGGTTAACCGTAAAACAACGT 59.384 45.455 18.39 0.00 41.27 3.99
3430 4135 2.376987 ATAAAGCGGGCGGGGGTTA 61.377 57.895 0.00 0.00 0.00 2.85
3461 4166 0.171903 GCATCAGCTTTGTTCGCCAT 59.828 50.000 0.00 0.00 37.91 4.40
3462 4167 1.580942 GCATCAGCTTTGTTCGCCA 59.419 52.632 0.00 0.00 37.91 5.69
3493 4212 3.845781 ATTTATGTCATGACGCTCCCT 57.154 42.857 20.54 1.44 0.00 4.20
3495 4214 3.604772 GCGAATTTATGTCATGACGCTCC 60.605 47.826 20.54 5.53 41.25 4.70
3497 4216 2.033747 CGCGAATTTATGTCATGACGCT 60.034 45.455 20.54 12.87 42.06 5.07
3501 4220 1.601903 GGGCGCGAATTTATGTCATGA 59.398 47.619 12.10 0.00 0.00 3.07
3503 4222 0.586319 CGGGCGCGAATTTATGTCAT 59.414 50.000 19.65 0.00 0.00 3.06
3526 4245 2.826337 CCGATCAGGGATCCACTCA 58.174 57.895 15.23 0.00 35.83 3.41
3605 4329 2.617532 GGAGTGGTACTCGTCCTGTACT 60.618 54.545 3.17 0.00 45.96 2.73
3614 4338 3.834799 GGGCCGGAGTGGTACTCG 61.835 72.222 5.05 0.00 45.96 4.18
3629 4357 2.246739 TACGTACTCGATCGCCGGG 61.247 63.158 11.09 3.07 46.23 5.73



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.