Multiple sequence alignment - TraesCS6B01G288900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G288900 chr6B 100.000 3163 0 0 1 3163 520085068 520088230 0.000000e+00 5842.0
1 TraesCS6B01G288900 chr6B 78.117 393 61 16 38 425 593942602 593942974 3.170000e-55 226.0
2 TraesCS6B01G288900 chr6D 91.764 1627 93 18 1213 2835 344332934 344334523 0.000000e+00 2224.0
3 TraesCS6B01G288900 chr6D 87.463 670 42 16 569 1233 344332286 344332918 0.000000e+00 734.0
4 TraesCS6B01G288900 chr6D 90.549 328 25 3 2835 3157 344334556 344334882 2.250000e-116 429.0
5 TraesCS6B01G288900 chr6D 84.703 438 44 12 1 427 407199045 407198620 1.750000e-112 416.0
6 TraesCS6B01G288900 chr6D 96.970 33 1 0 2 34 431194593 431194625 4.410000e-04 56.5
7 TraesCS6B01G288900 chr6A 90.280 1574 78 30 1275 2832 484857727 484859241 0.000000e+00 1989.0
8 TraesCS6B01G288900 chr6A 88.350 824 42 21 430 1235 484856962 484857749 0.000000e+00 941.0
9 TraesCS6B01G288900 chr6A 91.845 233 16 1 2835 3067 484859278 484859507 3.940000e-84 322.0
10 TraesCS6B01G288900 chr6A 86.869 99 12 1 1 99 55320994 55321091 3.340000e-20 110.0
11 TraesCS6B01G288900 chr4B 86.834 319 30 7 110 427 609309631 609309938 2.340000e-91 346.0
12 TraesCS6B01G288900 chr4B 89.247 93 10 0 7 99 614775760 614775852 1.990000e-22 117.0
13 TraesCS6B01G288900 chr3B 82.284 429 39 12 1 427 21909416 21909023 1.410000e-88 337.0
14 TraesCS6B01G288900 chr3B 89.316 234 20 4 202 433 709500688 709500458 3.990000e-74 289.0
15 TraesCS6B01G288900 chr3B 92.500 80 6 0 1 80 709500739 709500660 7.170000e-22 115.0
16 TraesCS6B01G288900 chr7B 82.677 381 50 7 48 427 683460625 683460260 1.090000e-84 324.0
17 TraesCS6B01G288900 chr7B 84.112 321 38 10 108 427 630428905 630429213 6.630000e-77 298.0
18 TraesCS6B01G288900 chr5B 84.923 325 38 6 108 431 679306956 679307270 5.090000e-83 318.0
19 TraesCS6B01G288900 chr5B 94.949 99 5 0 1 99 109165869 109165771 4.220000e-34 156.0
20 TraesCS6B01G288900 chr3D 82.632 380 47 11 46 424 89937138 89937499 5.090000e-83 318.0
21 TraesCS6B01G288900 chr7D 80.374 428 63 14 2 427 138089977 138089569 3.960000e-79 305.0
22 TraesCS6B01G288900 chr2D 80.140 428 65 14 2 427 589911755 589911346 5.130000e-78 302.0
23 TraesCS6B01G288900 chr1B 86.154 260 31 5 171 427 308539378 308539635 3.110000e-70 276.0
24 TraesCS6B01G288900 chr3A 85.000 100 12 2 1 99 455231717 455231620 7.220000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G288900 chr6B 520085068 520088230 3162 False 5842 5842 100.000000 1 3163 1 chr6B.!!$F1 3162
1 TraesCS6B01G288900 chr6D 344332286 344334882 2596 False 1129 2224 89.925333 569 3157 3 chr6D.!!$F2 2588
2 TraesCS6B01G288900 chr6A 484856962 484859507 2545 False 1084 1989 90.158333 430 3067 3 chr6A.!!$F2 2637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.034059 CATCCTACTGCCACGGATCC 59.966 60.0 0.00 0.00 35.43 3.36 F
312 313 0.040058 TCCTGGCGGTAGGTTGTCTA 59.960 55.0 0.00 0.00 38.99 2.59 F
507 509 0.105778 AAACCACATTTGCAACGGGG 59.894 50.0 13.67 13.67 0.00 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1360 1422 0.880278 TGCAGACTGAACAGTTCGGC 60.880 55.0 20.42 13.53 42.66 5.54 R
1649 1714 1.062488 AGGCAACACAAGAGAGGGGT 61.062 55.0 0.00 0.00 41.41 4.95 R
2403 2478 0.684805 CAAGACCTACGAGGGAGCCT 60.685 60.0 5.54 0.00 40.58 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.641777 GTTTTCGAAAAGAAGCAAGCAAT 57.358 34.783 23.08 0.00 40.40 3.56
23 24 6.036246 GTTTTCGAAAAGAAGCAAGCAATT 57.964 33.333 23.08 0.00 40.40 2.32
24 25 7.160633 GTTTTCGAAAAGAAGCAAGCAATTA 57.839 32.000 23.08 0.00 40.40 1.40
25 26 7.617557 GTTTTCGAAAAGAAGCAAGCAATTAA 58.382 30.769 23.08 0.00 40.40 1.40
26 27 7.763172 TTTCGAAAAGAAGCAAGCAATTAAA 57.237 28.000 8.44 0.00 40.40 1.52
27 28 6.747659 TCGAAAAGAAGCAAGCAATTAAAC 57.252 33.333 0.00 0.00 0.00 2.01
28 29 6.503524 TCGAAAAGAAGCAAGCAATTAAACT 58.496 32.000 0.00 0.00 0.00 2.66
29 30 6.978080 TCGAAAAGAAGCAAGCAATTAAACTT 59.022 30.769 0.00 0.00 0.00 2.66
30 31 7.043458 TCGAAAAGAAGCAAGCAATTAAACTTG 60.043 33.333 10.36 10.36 44.88 3.16
31 32 7.043458 CGAAAAGAAGCAAGCAATTAAACTTGA 60.043 33.333 16.22 0.00 44.89 3.02
32 33 8.491331 AAAAGAAGCAAGCAATTAAACTTGAA 57.509 26.923 16.22 0.00 44.89 2.69
33 34 8.491331 AAAGAAGCAAGCAATTAAACTTGAAA 57.509 26.923 16.22 0.00 44.89 2.69
34 35 8.491331 AAGAAGCAAGCAATTAAACTTGAAAA 57.509 26.923 16.22 0.00 44.89 2.29
53 54 3.341270 TGGCAAACACAGGACCCT 58.659 55.556 0.00 0.00 0.00 4.34
54 55 2.545969 TGGCAAACACAGGACCCTA 58.454 52.632 0.00 0.00 0.00 3.53
55 56 0.109723 TGGCAAACACAGGACCCTAC 59.890 55.000 0.00 0.00 0.00 3.18
56 57 0.608308 GGCAAACACAGGACCCTACC 60.608 60.000 0.00 0.00 0.00 3.18
57 58 0.953960 GCAAACACAGGACCCTACCG 60.954 60.000 0.00 0.00 34.73 4.02
58 59 0.395312 CAAACACAGGACCCTACCGT 59.605 55.000 0.00 0.00 34.73 4.83
59 60 0.683412 AAACACAGGACCCTACCGTC 59.317 55.000 0.00 0.00 34.73 4.79
60 61 0.470456 AACACAGGACCCTACCGTCA 60.470 55.000 0.00 0.00 34.24 4.35
61 62 0.470456 ACACAGGACCCTACCGTCAA 60.470 55.000 0.00 0.00 34.24 3.18
62 63 0.246635 CACAGGACCCTACCGTCAAG 59.753 60.000 0.00 0.00 34.24 3.02
63 64 0.178941 ACAGGACCCTACCGTCAAGT 60.179 55.000 0.00 0.00 34.24 3.16
64 65 0.246635 CAGGACCCTACCGTCAAGTG 59.753 60.000 0.00 0.00 34.24 3.16
65 66 1.079336 GGACCCTACCGTCAAGTGC 60.079 63.158 0.00 0.00 34.24 4.40
66 67 1.079336 GACCCTACCGTCAAGTGCC 60.079 63.158 0.00 0.00 32.74 5.01
67 68 2.267961 CCCTACCGTCAAGTGCCC 59.732 66.667 0.00 0.00 0.00 5.36
68 69 2.291043 CCCTACCGTCAAGTGCCCT 61.291 63.158 0.00 0.00 0.00 5.19
69 70 1.079127 CCTACCGTCAAGTGCCCTG 60.079 63.158 0.00 0.00 0.00 4.45
70 71 1.079127 CTACCGTCAAGTGCCCTGG 60.079 63.158 0.00 0.00 0.00 4.45
71 72 3.248446 TACCGTCAAGTGCCCTGGC 62.248 63.158 0.00 0.00 42.35 4.85
74 75 4.643387 GTCAAGTGCCCTGGCGGT 62.643 66.667 3.32 0.00 45.51 5.68
75 76 2.925706 TCAAGTGCCCTGGCGGTA 60.926 61.111 3.32 0.00 45.51 4.02
76 77 2.436646 CAAGTGCCCTGGCGGTAG 60.437 66.667 3.32 0.00 45.51 3.18
77 78 3.717294 AAGTGCCCTGGCGGTAGG 61.717 66.667 3.32 0.00 45.51 3.18
83 84 2.363795 CCTGGCGGTAGGGTCAGA 60.364 66.667 0.00 0.00 42.20 3.27
84 85 2.722201 CCTGGCGGTAGGGTCAGAC 61.722 68.421 0.00 0.00 42.20 3.51
85 86 3.064987 CTGGCGGTAGGGTCAGACG 62.065 68.421 0.00 0.00 42.20 4.18
86 87 3.834799 GGCGGTAGGGTCAGACGG 61.835 72.222 0.00 0.00 0.00 4.79
87 88 4.509737 GCGGTAGGGTCAGACGGC 62.510 72.222 0.00 0.00 35.20 5.68
88 89 3.834799 CGGTAGGGTCAGACGGCC 61.835 72.222 0.00 0.00 0.00 6.13
89 90 2.363925 GGTAGGGTCAGACGGCCT 60.364 66.667 0.00 4.01 0.00 5.19
90 91 1.076485 GGTAGGGTCAGACGGCCTA 60.076 63.158 0.00 2.25 0.00 3.93
91 92 1.390383 GGTAGGGTCAGACGGCCTAC 61.390 65.000 20.32 20.32 34.35 3.18
92 93 1.076485 TAGGGTCAGACGGCCTACC 60.076 63.158 0.00 0.81 0.00 3.18
103 104 3.263941 GCCTACCGCCAACACAAG 58.736 61.111 0.00 0.00 0.00 3.16
104 105 1.302192 GCCTACCGCCAACACAAGA 60.302 57.895 0.00 0.00 0.00 3.02
105 106 1.574702 GCCTACCGCCAACACAAGAC 61.575 60.000 0.00 0.00 0.00 3.01
106 107 0.953960 CCTACCGCCAACACAAGACC 60.954 60.000 0.00 0.00 0.00 3.85
107 108 0.953960 CTACCGCCAACACAAGACCC 60.954 60.000 0.00 0.00 0.00 4.46
108 109 1.412453 TACCGCCAACACAAGACCCT 61.412 55.000 0.00 0.00 0.00 4.34
109 110 2.260869 CCGCCAACACAAGACCCTG 61.261 63.158 0.00 0.00 0.00 4.45
110 111 2.908073 CGCCAACACAAGACCCTGC 61.908 63.158 0.00 0.00 0.00 4.85
111 112 2.908073 GCCAACACAAGACCCTGCG 61.908 63.158 0.00 0.00 0.00 5.18
112 113 1.227823 CCAACACAAGACCCTGCGA 60.228 57.895 0.00 0.00 0.00 5.10
113 114 0.606401 CCAACACAAGACCCTGCGAT 60.606 55.000 0.00 0.00 0.00 4.58
114 115 1.238439 CAACACAAGACCCTGCGATT 58.762 50.000 0.00 0.00 0.00 3.34
115 116 1.608590 CAACACAAGACCCTGCGATTT 59.391 47.619 0.00 0.00 0.00 2.17
116 117 1.981256 ACACAAGACCCTGCGATTTT 58.019 45.000 0.00 0.00 0.00 1.82
117 118 2.306847 ACACAAGACCCTGCGATTTTT 58.693 42.857 0.00 0.00 0.00 1.94
118 119 2.293399 ACACAAGACCCTGCGATTTTTC 59.707 45.455 0.00 0.00 0.00 2.29
119 120 1.535462 ACAAGACCCTGCGATTTTTCG 59.465 47.619 0.00 0.00 0.00 3.46
120 121 1.535462 CAAGACCCTGCGATTTTTCGT 59.465 47.619 0.00 0.00 35.26 3.85
121 122 1.892209 AGACCCTGCGATTTTTCGTT 58.108 45.000 0.00 0.00 35.26 3.85
122 123 3.048337 AGACCCTGCGATTTTTCGTTA 57.952 42.857 0.00 0.00 35.26 3.18
123 124 2.740447 AGACCCTGCGATTTTTCGTTAC 59.260 45.455 0.00 0.00 35.26 2.50
124 125 2.481185 GACCCTGCGATTTTTCGTTACA 59.519 45.455 0.00 0.00 35.26 2.41
125 126 2.482721 ACCCTGCGATTTTTCGTTACAG 59.517 45.455 0.00 0.00 35.26 2.74
126 127 2.739913 CCCTGCGATTTTTCGTTACAGA 59.260 45.455 0.00 0.00 35.26 3.41
127 128 3.187637 CCCTGCGATTTTTCGTTACAGAA 59.812 43.478 0.00 0.00 35.26 3.02
128 129 4.394795 CCTGCGATTTTTCGTTACAGAAG 58.605 43.478 0.00 0.00 35.26 2.85
129 130 3.805823 TGCGATTTTTCGTTACAGAAGC 58.194 40.909 0.00 0.00 35.26 3.86
130 131 3.496884 TGCGATTTTTCGTTACAGAAGCT 59.503 39.130 0.00 0.00 35.26 3.74
131 132 4.024387 TGCGATTTTTCGTTACAGAAGCTT 60.024 37.500 0.00 0.00 35.26 3.74
132 133 4.909880 GCGATTTTTCGTTACAGAAGCTTT 59.090 37.500 0.00 0.00 35.26 3.51
133 134 5.058128 GCGATTTTTCGTTACAGAAGCTTTC 59.942 40.000 0.00 0.00 35.26 2.62
134 135 5.278367 CGATTTTTCGTTACAGAAGCTTTCG 59.722 40.000 0.00 0.00 34.02 3.46
135 136 4.461992 TTTTCGTTACAGAAGCTTTCGG 57.538 40.909 0.00 0.00 34.02 4.30
136 137 3.374220 TTCGTTACAGAAGCTTTCGGA 57.626 42.857 0.00 0.00 34.02 4.55
137 138 2.942710 TCGTTACAGAAGCTTTCGGAG 58.057 47.619 0.00 0.00 34.02 4.63
138 139 1.993370 CGTTACAGAAGCTTTCGGAGG 59.007 52.381 0.00 0.00 34.02 4.30
139 140 1.732809 GTTACAGAAGCTTTCGGAGGC 59.267 52.381 0.00 0.00 34.02 4.70
140 141 0.973632 TACAGAAGCTTTCGGAGGCA 59.026 50.000 0.00 0.00 34.02 4.75
141 142 0.108585 ACAGAAGCTTTCGGAGGCAA 59.891 50.000 0.00 0.00 34.02 4.52
142 143 1.238439 CAGAAGCTTTCGGAGGCAAA 58.762 50.000 0.00 0.00 34.02 3.68
143 144 1.608590 CAGAAGCTTTCGGAGGCAAAA 59.391 47.619 0.00 0.00 34.02 2.44
144 145 2.034558 CAGAAGCTTTCGGAGGCAAAAA 59.965 45.455 0.00 0.00 34.02 1.94
145 146 2.034685 AGAAGCTTTCGGAGGCAAAAAC 59.965 45.455 0.00 0.00 34.02 2.43
146 147 0.673985 AGCTTTCGGAGGCAAAAACC 59.326 50.000 0.00 0.00 0.00 3.27
147 148 0.319555 GCTTTCGGAGGCAAAAACCC 60.320 55.000 0.00 0.00 0.00 4.11
148 149 1.036707 CTTTCGGAGGCAAAAACCCA 58.963 50.000 0.00 0.00 0.00 4.51
149 150 1.410882 CTTTCGGAGGCAAAAACCCAA 59.589 47.619 0.00 0.00 0.00 4.12
150 151 1.036707 TTCGGAGGCAAAAACCCAAG 58.963 50.000 0.00 0.00 0.00 3.61
151 152 1.006220 CGGAGGCAAAAACCCAAGC 60.006 57.895 0.00 0.00 0.00 4.01
156 157 2.093306 GGCAAAAACCCAAGCCATAC 57.907 50.000 0.00 0.00 46.26 2.39
157 158 1.338674 GGCAAAAACCCAAGCCATACC 60.339 52.381 0.00 0.00 46.26 2.73
158 159 1.338674 GCAAAAACCCAAGCCATACCC 60.339 52.381 0.00 0.00 0.00 3.69
159 160 2.256306 CAAAAACCCAAGCCATACCCT 58.744 47.619 0.00 0.00 0.00 4.34
160 161 3.436243 CAAAAACCCAAGCCATACCCTA 58.564 45.455 0.00 0.00 0.00 3.53
161 162 4.030216 CAAAAACCCAAGCCATACCCTAT 58.970 43.478 0.00 0.00 0.00 2.57
162 163 3.595190 AAACCCAAGCCATACCCTATC 57.405 47.619 0.00 0.00 0.00 2.08
163 164 1.056660 ACCCAAGCCATACCCTATCG 58.943 55.000 0.00 0.00 0.00 2.92
164 165 1.056660 CCCAAGCCATACCCTATCGT 58.943 55.000 0.00 0.00 0.00 3.73
165 166 1.002087 CCCAAGCCATACCCTATCGTC 59.998 57.143 0.00 0.00 0.00 4.20
166 167 1.691976 CCAAGCCATACCCTATCGTCA 59.308 52.381 0.00 0.00 0.00 4.35
167 168 2.548067 CCAAGCCATACCCTATCGTCAC 60.548 54.545 0.00 0.00 0.00 3.67
168 169 2.365617 CAAGCCATACCCTATCGTCACT 59.634 50.000 0.00 0.00 0.00 3.41
169 170 2.679082 AGCCATACCCTATCGTCACTT 58.321 47.619 0.00 0.00 0.00 3.16
170 171 2.628657 AGCCATACCCTATCGTCACTTC 59.371 50.000 0.00 0.00 0.00 3.01
171 172 2.607282 GCCATACCCTATCGTCACTTCG 60.607 54.545 0.00 0.00 0.00 3.79
172 173 2.621998 CCATACCCTATCGTCACTTCGT 59.378 50.000 0.00 0.00 0.00 3.85
173 174 3.304525 CCATACCCTATCGTCACTTCGTC 60.305 52.174 0.00 0.00 0.00 4.20
174 175 1.830279 ACCCTATCGTCACTTCGTCA 58.170 50.000 0.00 0.00 0.00 4.35
175 176 1.743958 ACCCTATCGTCACTTCGTCAG 59.256 52.381 0.00 0.00 0.00 3.51
176 177 1.065701 CCCTATCGTCACTTCGTCAGG 59.934 57.143 0.00 0.00 34.91 3.86
177 178 1.065701 CCTATCGTCACTTCGTCAGGG 59.934 57.143 0.00 0.00 33.15 4.45
178 179 1.065701 CTATCGTCACTTCGTCAGGGG 59.934 57.143 0.00 0.00 0.00 4.79
179 180 0.898789 ATCGTCACTTCGTCAGGGGT 60.899 55.000 0.00 0.00 0.00 4.95
180 181 1.372997 CGTCACTTCGTCAGGGGTG 60.373 63.158 0.00 0.00 0.00 4.61
181 182 1.668151 GTCACTTCGTCAGGGGTGC 60.668 63.158 0.00 0.00 0.00 5.01
182 183 1.837051 TCACTTCGTCAGGGGTGCT 60.837 57.895 0.00 0.00 0.00 4.40
183 184 1.669115 CACTTCGTCAGGGGTGCTG 60.669 63.158 0.00 0.00 0.00 4.41
184 185 2.046892 CTTCGTCAGGGGTGCTGG 60.047 66.667 0.00 0.00 0.00 4.85
185 186 4.329545 TTCGTCAGGGGTGCTGGC 62.330 66.667 0.00 0.00 0.00 4.85
188 189 3.958860 GTCAGGGGTGCTGGCAGT 61.959 66.667 17.16 0.00 0.00 4.40
189 190 2.203922 TCAGGGGTGCTGGCAGTA 60.204 61.111 17.16 9.18 0.00 2.74
190 191 2.270205 CAGGGGTGCTGGCAGTAG 59.730 66.667 17.16 0.00 0.00 2.57
191 192 3.011517 AGGGGTGCTGGCAGTAGG 61.012 66.667 17.16 0.00 0.00 3.18
192 193 4.115199 GGGGTGCTGGCAGTAGGG 62.115 72.222 17.16 0.00 0.00 3.53
193 194 3.330720 GGGTGCTGGCAGTAGGGT 61.331 66.667 17.16 0.00 0.00 4.34
194 195 2.757077 GGTGCTGGCAGTAGGGTT 59.243 61.111 17.16 0.00 0.00 4.11
195 196 1.559065 GGGTGCTGGCAGTAGGGTTA 61.559 60.000 17.16 0.00 0.00 2.85
196 197 0.107654 GGTGCTGGCAGTAGGGTTAG 60.108 60.000 17.16 0.00 0.00 2.34
197 198 0.902531 GTGCTGGCAGTAGGGTTAGA 59.097 55.000 17.16 0.00 0.00 2.10
198 199 0.902531 TGCTGGCAGTAGGGTTAGAC 59.097 55.000 17.16 0.00 0.00 2.59
199 200 0.902531 GCTGGCAGTAGGGTTAGACA 59.097 55.000 17.16 0.00 0.00 3.41
200 201 1.134670 GCTGGCAGTAGGGTTAGACAG 60.135 57.143 17.16 0.00 0.00 3.51
201 202 0.902531 TGGCAGTAGGGTTAGACAGC 59.097 55.000 0.00 0.00 0.00 4.40
202 203 0.178301 GGCAGTAGGGTTAGACAGCC 59.822 60.000 0.00 0.00 44.40 4.85
215 216 2.586792 CAGCCTACTGCCAGGGTC 59.413 66.667 0.00 0.00 44.61 4.46
216 217 2.689034 AGCCTACTGCCAGGGTCC 60.689 66.667 0.00 0.00 42.86 4.46
217 218 2.689034 GCCTACTGCCAGGGTCCT 60.689 66.667 0.00 0.00 36.10 3.85
218 219 3.036429 GCCTACTGCCAGGGTCCTG 62.036 68.421 9.94 9.94 43.26 3.86
226 227 3.470888 CAGGGTCCTGGCGGTAGG 61.471 72.222 9.08 0.00 40.17 3.18
227 228 4.798682 AGGGTCCTGGCGGTAGGG 62.799 72.222 0.00 0.00 38.42 3.53
229 230 3.782443 GGTCCTGGCGGTAGGGTG 61.782 72.222 0.00 0.00 38.42 4.61
230 231 4.468689 GTCCTGGCGGTAGGGTGC 62.469 72.222 0.00 0.00 38.42 5.01
231 232 4.715130 TCCTGGCGGTAGGGTGCT 62.715 66.667 0.00 0.00 38.42 4.40
232 233 2.762459 CCTGGCGGTAGGGTGCTA 60.762 66.667 0.00 0.00 34.06 3.49
233 234 2.363975 CCTGGCGGTAGGGTGCTAA 61.364 63.158 0.00 0.00 34.06 3.09
234 235 1.696097 CCTGGCGGTAGGGTGCTAAT 61.696 60.000 0.00 0.00 34.06 1.73
235 236 0.249911 CTGGCGGTAGGGTGCTAATC 60.250 60.000 0.00 0.00 0.00 1.75
236 237 1.070957 GGCGGTAGGGTGCTAATCC 59.929 63.158 0.00 0.00 0.00 3.01
237 238 1.692173 GGCGGTAGGGTGCTAATCCA 61.692 60.000 0.00 0.00 0.00 3.41
238 239 0.532196 GCGGTAGGGTGCTAATCCAC 60.532 60.000 0.00 0.00 35.00 4.02
239 240 0.249322 CGGTAGGGTGCTAATCCACG 60.249 60.000 0.00 0.00 36.59 4.94
240 241 0.828677 GGTAGGGTGCTAATCCACGT 59.171 55.000 0.00 0.00 36.59 4.49
241 242 1.202498 GGTAGGGTGCTAATCCACGTC 60.202 57.143 0.00 0.00 36.59 4.34
242 243 1.479323 GTAGGGTGCTAATCCACGTCA 59.521 52.381 0.00 0.00 36.59 4.35
243 244 0.537188 AGGGTGCTAATCCACGTCAG 59.463 55.000 0.00 0.00 36.59 3.51
244 245 1.090052 GGGTGCTAATCCACGTCAGC 61.090 60.000 0.00 0.00 36.59 4.26
245 246 0.391130 GGTGCTAATCCACGTCAGCA 60.391 55.000 0.00 0.00 41.52 4.41
246 247 1.656652 GTGCTAATCCACGTCAGCAT 58.343 50.000 8.11 0.00 45.09 3.79
247 248 1.328680 GTGCTAATCCACGTCAGCATG 59.671 52.381 8.11 0.00 45.09 4.06
248 249 1.066215 TGCTAATCCACGTCAGCATGT 60.066 47.619 0.00 0.00 39.03 3.21
249 250 1.328680 GCTAATCCACGTCAGCATGTG 59.671 52.381 0.00 0.00 39.04 3.21
253 254 4.994744 CACGTCAGCATGTGGAGA 57.005 55.556 0.00 0.00 36.06 3.71
254 255 2.449548 CACGTCAGCATGTGGAGAC 58.550 57.895 0.00 0.00 36.06 3.36
255 256 3.772636 CGTCAGCATGTGGAGACG 58.227 61.111 13.71 13.71 46.12 4.18
256 257 4.192000 GTCAGCATGTGGAGACGG 57.808 61.111 0.00 0.00 37.40 4.79
257 258 2.103042 GTCAGCATGTGGAGACGGC 61.103 63.158 0.00 0.00 37.40 5.68
258 259 2.821366 CAGCATGTGGAGACGGCC 60.821 66.667 0.00 0.00 0.00 6.13
259 260 4.457496 AGCATGTGGAGACGGCCG 62.457 66.667 26.86 26.86 0.00 6.13
279 280 4.222847 GTCCCCCTCCGTCGCATC 62.223 72.222 0.00 0.00 0.00 3.91
282 283 2.520982 CCCCTCCGTCGCATCCTA 60.521 66.667 0.00 0.00 0.00 2.94
283 284 2.728817 CCCTCCGTCGCATCCTAC 59.271 66.667 0.00 0.00 0.00 3.18
284 285 1.828660 CCCTCCGTCGCATCCTACT 60.829 63.158 0.00 0.00 0.00 2.57
285 286 1.360551 CCTCCGTCGCATCCTACTG 59.639 63.158 0.00 0.00 0.00 2.74
286 287 1.299468 CTCCGTCGCATCCTACTGC 60.299 63.158 0.00 0.00 38.81 4.40
287 288 2.279517 CCGTCGCATCCTACTGCC 60.280 66.667 0.00 0.00 39.00 4.85
288 289 2.494445 CGTCGCATCCTACTGCCA 59.506 61.111 0.00 0.00 39.00 4.92
289 290 1.878522 CGTCGCATCCTACTGCCAC 60.879 63.158 0.00 0.00 39.00 5.01
290 291 1.878522 GTCGCATCCTACTGCCACG 60.879 63.158 0.00 0.00 39.00 4.94
291 292 2.586079 CGCATCCTACTGCCACGG 60.586 66.667 0.00 0.00 39.00 4.94
292 293 2.900273 GCATCCTACTGCCACGGA 59.100 61.111 0.00 0.00 36.10 4.69
293 294 1.447643 GCATCCTACTGCCACGGAT 59.552 57.895 0.00 0.00 38.03 4.18
294 295 0.601311 GCATCCTACTGCCACGGATC 60.601 60.000 0.00 0.00 35.43 3.36
295 296 0.034059 CATCCTACTGCCACGGATCC 59.966 60.000 0.00 0.00 35.43 3.36
296 297 0.105453 ATCCTACTGCCACGGATCCT 60.105 55.000 10.75 0.00 32.17 3.24
297 298 1.043116 TCCTACTGCCACGGATCCTG 61.043 60.000 10.75 7.18 0.00 3.86
298 299 1.443407 CTACTGCCACGGATCCTGG 59.557 63.158 20.19 20.19 0.00 4.45
303 304 3.151710 CCACGGATCCTGGCGGTA 61.152 66.667 10.75 0.00 0.00 4.02
304 305 2.417516 CACGGATCCTGGCGGTAG 59.582 66.667 10.75 0.00 0.00 3.18
305 306 2.838225 ACGGATCCTGGCGGTAGG 60.838 66.667 10.75 0.00 39.29 3.18
306 307 2.838225 CGGATCCTGGCGGTAGGT 60.838 66.667 10.75 0.00 38.99 3.08
307 308 2.432300 CGGATCCTGGCGGTAGGTT 61.432 63.158 10.75 0.00 38.99 3.50
308 309 1.146263 GGATCCTGGCGGTAGGTTG 59.854 63.158 3.84 0.00 38.99 3.77
309 310 1.623542 GGATCCTGGCGGTAGGTTGT 61.624 60.000 3.84 0.00 38.99 3.32
310 311 0.179081 GATCCTGGCGGTAGGTTGTC 60.179 60.000 0.00 0.00 38.99 3.18
311 312 0.617820 ATCCTGGCGGTAGGTTGTCT 60.618 55.000 0.00 0.00 38.99 3.41
312 313 0.040058 TCCTGGCGGTAGGTTGTCTA 59.960 55.000 0.00 0.00 38.99 2.59
313 314 0.899720 CCTGGCGGTAGGTTGTCTAA 59.100 55.000 0.00 0.00 32.99 2.10
314 315 1.405121 CCTGGCGGTAGGTTGTCTAAC 60.405 57.143 0.00 0.00 36.04 2.34
325 326 3.227810 GTTGTCTAACCCTACCGACAG 57.772 52.381 0.00 0.00 37.64 3.51
326 327 1.180029 TGTCTAACCCTACCGACAGC 58.820 55.000 0.00 0.00 33.01 4.40
327 328 1.180029 GTCTAACCCTACCGACAGCA 58.820 55.000 0.00 0.00 0.00 4.41
328 329 1.755380 GTCTAACCCTACCGACAGCAT 59.245 52.381 0.00 0.00 0.00 3.79
329 330 2.029623 TCTAACCCTACCGACAGCATC 58.970 52.381 0.00 0.00 0.00 3.91
330 331 1.068741 CTAACCCTACCGACAGCATCC 59.931 57.143 0.00 0.00 0.00 3.51
331 332 1.623542 AACCCTACCGACAGCATCCC 61.624 60.000 0.00 0.00 0.00 3.85
332 333 1.762460 CCCTACCGACAGCATCCCT 60.762 63.158 0.00 0.00 0.00 4.20
334 335 1.443407 CTACCGACAGCATCCCTGG 59.557 63.158 0.00 0.00 46.14 4.45
335 336 2.650813 CTACCGACAGCATCCCTGGC 62.651 65.000 0.00 0.00 46.71 4.85
338 339 4.101448 GACAGCATCCCTGGCGGT 62.101 66.667 0.00 0.00 46.14 5.68
339 340 2.687200 ACAGCATCCCTGGCGGTA 60.687 61.111 0.00 0.00 46.14 4.02
340 341 2.109799 CAGCATCCCTGGCGGTAG 59.890 66.667 0.00 0.00 37.93 3.18
341 342 3.866582 AGCATCCCTGGCGGTAGC 61.867 66.667 0.00 0.00 44.18 3.58
354 355 3.831715 GCGGTAGCAAAAGAGTCAAAT 57.168 42.857 0.00 0.00 44.35 2.32
355 356 3.748298 GCGGTAGCAAAAGAGTCAAATC 58.252 45.455 0.00 0.00 44.35 2.17
356 357 3.426292 GCGGTAGCAAAAGAGTCAAATCC 60.426 47.826 0.00 0.00 44.35 3.01
357 358 3.127030 CGGTAGCAAAAGAGTCAAATCCC 59.873 47.826 0.00 0.00 0.00 3.85
358 359 3.127030 GGTAGCAAAAGAGTCAAATCCCG 59.873 47.826 0.00 0.00 0.00 5.14
359 360 3.140325 AGCAAAAGAGTCAAATCCCGA 57.860 42.857 0.00 0.00 0.00 5.14
360 361 3.486383 AGCAAAAGAGTCAAATCCCGAA 58.514 40.909 0.00 0.00 0.00 4.30
361 362 3.888930 AGCAAAAGAGTCAAATCCCGAAA 59.111 39.130 0.00 0.00 0.00 3.46
362 363 4.340950 AGCAAAAGAGTCAAATCCCGAAAA 59.659 37.500 0.00 0.00 0.00 2.29
363 364 5.047188 GCAAAAGAGTCAAATCCCGAAAAA 58.953 37.500 0.00 0.00 0.00 1.94
382 383 2.089600 AAAAATTCCAACCGGGGTGA 57.910 45.000 15.19 0.00 37.22 4.02
383 384 1.627864 AAAATTCCAACCGGGGTGAG 58.372 50.000 15.19 3.75 37.22 3.51
384 385 0.774908 AAATTCCAACCGGGGTGAGA 59.225 50.000 15.19 6.39 37.22 3.27
385 386 0.999712 AATTCCAACCGGGGTGAGAT 59.000 50.000 15.19 3.88 37.22 2.75
386 387 0.546598 ATTCCAACCGGGGTGAGATC 59.453 55.000 15.19 0.00 37.22 2.75
387 388 1.559065 TTCCAACCGGGGTGAGATCC 61.559 60.000 15.19 0.00 37.22 3.36
388 389 1.995626 CCAACCGGGGTGAGATCCT 60.996 63.158 15.19 0.00 0.00 3.24
389 390 1.221840 CAACCGGGGTGAGATCCTG 59.778 63.158 6.08 0.00 0.00 3.86
390 391 1.080354 AACCGGGGTGAGATCCTGA 59.920 57.895 6.32 0.00 32.49 3.86
391 392 0.546747 AACCGGGGTGAGATCCTGAA 60.547 55.000 6.32 0.00 32.49 3.02
392 393 0.326618 ACCGGGGTGAGATCCTGAAT 60.327 55.000 6.32 0.00 32.49 2.57
393 394 0.839946 CCGGGGTGAGATCCTGAATT 59.160 55.000 0.00 0.00 32.49 2.17
394 395 1.475751 CCGGGGTGAGATCCTGAATTG 60.476 57.143 0.00 0.00 32.49 2.32
395 396 1.685148 GGGGTGAGATCCTGAATTGC 58.315 55.000 0.00 0.00 0.00 3.56
396 397 1.213926 GGGGTGAGATCCTGAATTGCT 59.786 52.381 0.00 0.00 0.00 3.91
397 398 2.439507 GGGGTGAGATCCTGAATTGCTA 59.560 50.000 0.00 0.00 0.00 3.49
398 399 3.073650 GGGGTGAGATCCTGAATTGCTAT 59.926 47.826 0.00 0.00 0.00 2.97
399 400 4.070716 GGGTGAGATCCTGAATTGCTATG 58.929 47.826 0.00 0.00 0.00 2.23
400 401 3.501445 GGTGAGATCCTGAATTGCTATGC 59.499 47.826 0.00 0.00 0.00 3.14
401 402 3.186001 GTGAGATCCTGAATTGCTATGCG 59.814 47.826 0.00 0.00 0.00 4.73
402 403 3.070015 TGAGATCCTGAATTGCTATGCGA 59.930 43.478 0.00 0.00 0.00 5.10
403 404 4.060900 GAGATCCTGAATTGCTATGCGAA 58.939 43.478 0.00 0.00 0.00 4.70
404 405 4.454678 AGATCCTGAATTGCTATGCGAAA 58.545 39.130 0.00 0.00 0.00 3.46
405 406 4.883585 AGATCCTGAATTGCTATGCGAAAA 59.116 37.500 0.00 0.00 0.00 2.29
406 407 4.621068 TCCTGAATTGCTATGCGAAAAG 57.379 40.909 0.00 0.00 0.00 2.27
407 408 3.378112 TCCTGAATTGCTATGCGAAAAGG 59.622 43.478 0.00 0.00 0.00 3.11
408 409 3.489738 CCTGAATTGCTATGCGAAAAGGG 60.490 47.826 0.00 0.00 0.00 3.95
409 410 3.088532 TGAATTGCTATGCGAAAAGGGT 58.911 40.909 0.00 0.00 0.00 4.34
410 411 3.128589 TGAATTGCTATGCGAAAAGGGTC 59.871 43.478 0.00 0.00 0.00 4.46
411 412 2.192664 TTGCTATGCGAAAAGGGTCA 57.807 45.000 0.00 0.00 0.00 4.02
412 413 2.192664 TGCTATGCGAAAAGGGTCAA 57.807 45.000 0.00 0.00 0.00 3.18
413 414 2.509569 TGCTATGCGAAAAGGGTCAAA 58.490 42.857 0.00 0.00 0.00 2.69
414 415 2.887783 TGCTATGCGAAAAGGGTCAAAA 59.112 40.909 0.00 0.00 0.00 2.44
415 416 3.242518 GCTATGCGAAAAGGGTCAAAAC 58.757 45.455 0.00 0.00 0.00 2.43
416 417 3.305064 GCTATGCGAAAAGGGTCAAAACA 60.305 43.478 0.00 0.00 0.00 2.83
417 418 2.570442 TGCGAAAAGGGTCAAAACAC 57.430 45.000 0.00 0.00 0.00 3.32
418 419 1.202200 TGCGAAAAGGGTCAAAACACG 60.202 47.619 0.00 0.00 32.44 4.49
419 420 1.064357 GCGAAAAGGGTCAAAACACGA 59.936 47.619 0.00 0.00 32.44 4.35
420 421 2.478200 GCGAAAAGGGTCAAAACACGAA 60.478 45.455 0.00 0.00 32.44 3.85
421 422 3.760537 CGAAAAGGGTCAAAACACGAAA 58.239 40.909 0.00 0.00 32.44 3.46
422 423 4.356289 CGAAAAGGGTCAAAACACGAAAT 58.644 39.130 0.00 0.00 32.44 2.17
423 424 4.801516 CGAAAAGGGTCAAAACACGAAATT 59.198 37.500 0.00 0.00 32.44 1.82
424 425 5.289917 CGAAAAGGGTCAAAACACGAAATTT 59.710 36.000 0.00 0.00 32.44 1.82
425 426 6.183360 CGAAAAGGGTCAAAACACGAAATTTT 60.183 34.615 0.00 0.00 32.44 1.82
426 427 6.415798 AAAGGGTCAAAACACGAAATTTTG 57.584 33.333 3.73 3.73 44.74 2.44
427 428 4.438148 AGGGTCAAAACACGAAATTTTGG 58.562 39.130 10.22 2.00 43.94 3.28
428 429 3.001838 GGGTCAAAACACGAAATTTTGGC 59.998 43.478 10.22 16.17 46.25 4.52
458 459 4.935630 CGGAAGGCGGAAACAAAC 57.064 55.556 0.00 0.00 0.00 2.93
459 460 1.284715 CGGAAGGCGGAAACAAACC 59.715 57.895 0.00 0.00 0.00 3.27
461 462 0.313987 GGAAGGCGGAAACAAACCAG 59.686 55.000 0.00 0.00 0.00 4.00
465 466 0.458260 GGCGGAAACAAACCAGTGTT 59.542 50.000 0.00 0.00 43.58 3.32
487 488 2.097733 CGTAAACGAAACTCGAAAGCGT 60.098 45.455 2.59 0.00 43.74 5.07
503 504 2.738135 AGCGTAAACCACATTTGCAAC 58.262 42.857 0.00 0.00 32.78 4.17
507 509 0.105778 AAACCACATTTGCAACGGGG 59.894 50.000 13.67 13.67 0.00 5.73
531 545 2.786495 CCTACGAGCGGCATGGAGT 61.786 63.158 1.45 0.00 0.00 3.85
565 579 0.807667 CGAACGGAGATGGAGCAAGG 60.808 60.000 0.00 0.00 0.00 3.61
644 658 4.819761 GCGATCTGCGTCTGGGCA 62.820 66.667 0.00 0.00 43.41 5.36
645 659 2.107750 CGATCTGCGTCTGGGCAT 59.892 61.111 0.00 0.00 42.99 4.40
647 661 1.890979 GATCTGCGTCTGGGCATGG 60.891 63.158 0.00 0.00 42.99 3.66
696 710 4.655527 CGAGGTGTCATATCGCCC 57.344 61.111 0.00 0.00 38.61 6.13
704 718 2.166664 GTGTCATATCGCCCCTCTATCC 59.833 54.545 0.00 0.00 0.00 2.59
839 853 0.259065 AGGTGCCCAGATCGTCTCTA 59.741 55.000 0.00 0.00 31.13 2.43
846 860 3.131400 GCCCAGATCGTCTCTACTTTCTT 59.869 47.826 0.00 0.00 31.13 2.52
920 934 1.002087 GCATCTATCTAACCACCGGGG 59.998 57.143 6.32 0.00 44.81 5.73
921 935 1.623811 CATCTATCTAACCACCGGGGG 59.376 57.143 25.15 25.15 42.91 5.40
993 1007 1.268283 CCTCACCCTCTTCCACTCCC 61.268 65.000 0.00 0.00 0.00 4.30
1001 1015 3.316573 CTTCCACTCCCCACCGCTC 62.317 68.421 0.00 0.00 0.00 5.03
1002 1016 4.631740 TCCACTCCCCACCGCTCA 62.632 66.667 0.00 0.00 0.00 4.26
1003 1017 4.394712 CCACTCCCCACCGCTCAC 62.395 72.222 0.00 0.00 0.00 3.51
1013 1030 2.126071 CCGCTCACCATCGTCGTT 60.126 61.111 0.00 0.00 0.00 3.85
1179 1201 7.707624 TCAAACTCCTCCGTTACTTCTTATA 57.292 36.000 0.00 0.00 0.00 0.98
1180 1202 8.302515 TCAAACTCCTCCGTTACTTCTTATAT 57.697 34.615 0.00 0.00 0.00 0.86
1208 1230 6.373216 GTCGACATCCTATTATCAGCTACTCT 59.627 42.308 11.55 0.00 0.00 3.24
1263 1323 2.376518 TGGCATCCTTCTTGGTTCTTCT 59.623 45.455 0.00 0.00 37.07 2.85
1269 1329 2.494059 CTTCTTGGTTCTTCTTCGGCA 58.506 47.619 0.00 0.00 0.00 5.69
1270 1330 2.169832 TCTTGGTTCTTCTTCGGCAG 57.830 50.000 0.00 0.00 0.00 4.85
1271 1331 1.416401 TCTTGGTTCTTCTTCGGCAGT 59.584 47.619 0.00 0.00 0.00 4.40
1272 1332 1.801178 CTTGGTTCTTCTTCGGCAGTC 59.199 52.381 0.00 0.00 0.00 3.51
1273 1333 0.756294 TGGTTCTTCTTCGGCAGTCA 59.244 50.000 0.00 0.00 0.00 3.41
1274 1334 1.140052 TGGTTCTTCTTCGGCAGTCAA 59.860 47.619 0.00 0.00 0.00 3.18
1275 1335 2.218603 GGTTCTTCTTCGGCAGTCAAA 58.781 47.619 0.00 0.00 0.00 2.69
1276 1336 2.616842 GGTTCTTCTTCGGCAGTCAAAA 59.383 45.455 0.00 0.00 0.00 2.44
1277 1337 3.066203 GGTTCTTCTTCGGCAGTCAAAAA 59.934 43.478 0.00 0.00 0.00 1.94
1294 1354 5.050295 GTCAAAAAGTCTCCGTTACTCCTTG 60.050 44.000 0.00 0.00 0.00 3.61
1322 1384 4.410099 TCATGGCATTTCCTGTTCTTCTT 58.590 39.130 0.00 0.00 35.26 2.52
1323 1385 4.219070 TCATGGCATTTCCTGTTCTTCTTG 59.781 41.667 0.00 0.00 35.26 3.02
1324 1386 3.565307 TGGCATTTCCTGTTCTTCTTGT 58.435 40.909 0.00 0.00 35.26 3.16
1325 1387 3.318839 TGGCATTTCCTGTTCTTCTTGTG 59.681 43.478 0.00 0.00 35.26 3.33
1345 1407 5.491070 TGTGTAGCATAATTCAGAGCTTGT 58.509 37.500 0.00 0.00 38.47 3.16
1360 1422 0.604578 CTTGTGGTGGCCTGAATTGG 59.395 55.000 3.32 0.00 0.00 3.16
1370 1432 1.247567 CCTGAATTGGCCGAACTGTT 58.752 50.000 0.00 0.00 0.00 3.16
1371 1433 1.200020 CCTGAATTGGCCGAACTGTTC 59.800 52.381 10.48 10.48 0.00 3.18
1436 1498 2.383527 CGCAAGCTGTTCGAGGACC 61.384 63.158 0.00 0.00 0.00 4.46
1548 1610 1.407979 CCGATACGGCCTGTAAGTTCT 59.592 52.381 0.00 0.00 41.17 3.01
1556 1618 3.211045 GGCCTGTAAGTTCTTCAACACA 58.789 45.455 0.00 0.00 34.60 3.72
1557 1619 3.821033 GGCCTGTAAGTTCTTCAACACAT 59.179 43.478 0.00 0.00 34.60 3.21
1558 1620 5.001232 GGCCTGTAAGTTCTTCAACACATA 58.999 41.667 0.00 0.00 34.60 2.29
1559 1621 5.106673 GGCCTGTAAGTTCTTCAACACATAC 60.107 44.000 0.00 0.00 34.60 2.39
1560 1622 5.701290 GCCTGTAAGTTCTTCAACACATACT 59.299 40.000 0.00 0.00 34.60 2.12
1561 1623 6.347725 GCCTGTAAGTTCTTCAACACATACTG 60.348 42.308 0.00 0.00 34.60 2.74
1574 1636 5.298197 ACACATACTGAGACTTCACTACG 57.702 43.478 0.00 0.00 0.00 3.51
1575 1637 4.099120 CACATACTGAGACTTCACTACGC 58.901 47.826 0.00 0.00 0.00 4.42
1579 1641 2.748532 ACTGAGACTTCACTACGCTACC 59.251 50.000 0.00 0.00 0.00 3.18
1620 1682 3.454375 ACGTGAGTGAGTTTTACAGGTG 58.546 45.455 0.00 0.00 46.97 4.00
1631 1696 4.069304 GTTTTACAGGTGGTATGTGAGCA 58.931 43.478 0.00 0.00 32.02 4.26
1642 1707 3.307059 GGTATGTGAGCAACTCTGAAGGT 60.307 47.826 0.00 0.00 0.00 3.50
1646 1711 3.181451 TGTGAGCAACTCTGAAGGTCATT 60.181 43.478 8.76 0.00 41.17 2.57
1694 1760 0.465705 GCGTCAGGATCATCAGGGAA 59.534 55.000 0.00 0.00 0.00 3.97
1766 1832 4.087892 AGCTGCGACGCCAAGGAT 62.088 61.111 18.69 0.59 0.00 3.24
1836 1902 0.252927 CCTCTTCTTCCTGGGGGACT 60.253 60.000 0.00 0.00 42.05 3.85
1890 1956 2.019951 GTGTGACCGCGTCGTTCAT 61.020 57.895 4.92 0.00 34.95 2.57
1891 1957 1.300311 TGTGACCGCGTCGTTCATT 60.300 52.632 4.92 0.00 34.95 2.57
2021 2090 6.529125 GTCGTATTCTTCGTCTGGAAATTACA 59.471 38.462 0.00 0.00 33.34 2.41
2022 2091 6.750501 TCGTATTCTTCGTCTGGAAATTACAG 59.249 38.462 0.00 0.00 33.34 2.74
2031 2100 5.446473 CGTCTGGAAATTACAGTTCAGATGC 60.446 44.000 4.97 0.00 37.25 3.91
2066 2135 1.408702 TCTTCTTGCAGTTGCCAAACC 59.591 47.619 1.06 0.00 41.18 3.27
2103 2172 7.201145 ACGATACAGTTATTCAGTCGCTTATT 58.799 34.615 0.00 0.00 0.00 1.40
2110 2179 8.869897 CAGTTATTCAGTCGCTTATTCTTGTAA 58.130 33.333 0.00 0.00 0.00 2.41
2111 2180 9.601217 AGTTATTCAGTCGCTTATTCTTGTAAT 57.399 29.630 0.00 0.00 0.00 1.89
2138 2207 3.312736 AATGAAACAGTGGTGAAGGGT 57.687 42.857 0.00 0.00 0.00 4.34
2154 2223 7.040062 TGGTGAAGGGTAACAAATTAATGAGTG 60.040 37.037 0.00 0.00 39.74 3.51
2158 2227 7.448748 AGGGTAACAAATTAATGAGTGTCAC 57.551 36.000 0.00 0.00 39.74 3.67
2206 2278 4.746535 TGTTCAGCCTCATACGGATAAA 57.253 40.909 0.00 0.00 0.00 1.40
2211 2283 7.441157 TGTTCAGCCTCATACGGATAAAATAAG 59.559 37.037 0.00 0.00 0.00 1.73
2252 2324 1.802365 GATGTTTTACGCCACGGAACT 59.198 47.619 0.00 0.00 25.49 3.01
2326 2401 4.337555 GCTGCATATGAACCTCAATCAGTT 59.662 41.667 6.97 0.00 0.00 3.16
2327 2402 5.528690 GCTGCATATGAACCTCAATCAGTTA 59.471 40.000 6.97 0.00 0.00 2.24
2357 2432 4.320275 GGGTAAGACTGTTTTACTGCTTGC 60.320 45.833 17.43 2.87 32.81 4.01
2366 2441 1.577328 TTACTGCTTGCTGCTTCGGC 61.577 55.000 0.00 0.69 43.37 5.54
2404 2479 2.649331 CAGCTCTTGCCATTTCCAAG 57.351 50.000 0.00 0.00 40.72 3.61
2503 2578 6.183360 CCTTGGACAGTTCATCATCTCTCATA 60.183 42.308 0.00 0.00 0.00 2.15
2616 2691 2.854522 GCAGTTATGCGGACCAAGT 58.145 52.632 0.00 0.00 43.87 3.16
2632 2707 6.483307 CGGACCAAGTCAACATATGTATGAAT 59.517 38.462 9.21 11.15 34.56 2.57
2667 2742 3.565307 AGAAACATGCCAGGAAGAAACA 58.435 40.909 0.00 0.00 0.00 2.83
2668 2743 3.571401 AGAAACATGCCAGGAAGAAACAG 59.429 43.478 0.00 0.00 0.00 3.16
2672 2747 1.691196 TGCCAGGAAGAAACAGGTTG 58.309 50.000 0.00 0.00 0.00 3.77
2673 2748 0.315251 GCCAGGAAGAAACAGGTTGC 59.685 55.000 0.00 0.00 0.00 4.17
2678 2753 3.096092 AGGAAGAAACAGGTTGCAACAA 58.904 40.909 29.55 0.00 0.00 2.83
2679 2754 3.119137 AGGAAGAAACAGGTTGCAACAAC 60.119 43.478 29.55 14.27 0.00 3.32
2696 2773 5.164109 GCAACAACAAAAACAAAAACATGCC 60.164 36.000 0.00 0.00 0.00 4.40
2713 2790 1.266718 TGCCAAGAAAGTTGATCGCAC 59.733 47.619 0.00 0.00 0.00 5.34
2714 2791 1.266718 GCCAAGAAAGTTGATCGCACA 59.733 47.619 0.00 0.00 0.00 4.57
2740 2817 2.331194 CTGCAAAACTGCCAGCATTAC 58.669 47.619 0.00 0.00 36.28 1.89
2749 2826 3.753272 ACTGCCAGCATTACTACAACTTG 59.247 43.478 0.00 0.00 0.00 3.16
2768 2845 5.133221 ACTTGAAAGCATTACACCACTTCT 58.867 37.500 0.00 0.00 0.00 2.85
2770 2847 5.689383 TGAAAGCATTACACCACTTCTTC 57.311 39.130 0.00 0.00 0.00 2.87
2775 2852 3.686726 GCATTACACCACTTCTTCTCCAG 59.313 47.826 0.00 0.00 0.00 3.86
2805 2883 5.854010 TTTTGGTGGTTACTATGCACAAA 57.146 34.783 0.00 0.00 0.00 2.83
2832 2910 4.396166 ACTCACACTGTCCAAAGAAAACTG 59.604 41.667 0.00 0.00 0.00 3.16
2833 2911 4.584874 TCACACTGTCCAAAGAAAACTGA 58.415 39.130 0.00 0.00 0.00 3.41
2880 2992 1.556911 AGCACATACTTGGTCAGAGGG 59.443 52.381 0.00 0.00 0.00 4.30
2897 3009 0.534873 GGGTCAGTCTTCAGCTCCTC 59.465 60.000 0.00 0.00 0.00 3.71
2910 3022 2.699846 CAGCTCCTCCTCTAGCTCAAAT 59.300 50.000 0.00 0.00 45.92 2.32
2960 3072 1.156736 GCGTTCAGGTTACATGCACT 58.843 50.000 0.00 0.00 0.00 4.40
2963 3075 2.778299 GTTCAGGTTACATGCACTGGA 58.222 47.619 0.00 0.00 0.00 3.86
2965 3077 2.778299 TCAGGTTACATGCACTGGAAC 58.222 47.619 12.99 12.99 46.47 3.62
2969 3081 3.821033 AGGTTACATGCACTGGAACTTTC 59.179 43.478 17.96 7.21 46.41 2.62
2996 3108 9.249457 AGTATTATCACATCACACTTCAATACG 57.751 33.333 0.00 0.00 33.62 3.06
2997 3109 9.031360 GTATTATCACATCACACTTCAATACGT 57.969 33.333 0.00 0.00 0.00 3.57
3007 3119 3.067106 ACTTCAATACGTCAGGCAGTTG 58.933 45.455 0.00 0.00 0.00 3.16
3017 3129 8.677148 ATACGTCAGGCAGTTGATAATTAAAT 57.323 30.769 0.00 0.00 0.00 1.40
3024 3136 9.241317 CAGGCAGTTGATAATTAAATAAAGCAG 57.759 33.333 0.00 0.00 0.00 4.24
3047 3159 9.196552 GCAGTTGCTGAAATAAGTTTAAAGAAT 57.803 29.630 0.00 0.00 38.21 2.40
3112 3229 0.249031 AACGGCAAGAAAGCAGCAAC 60.249 50.000 0.00 0.00 35.83 4.17
3117 3234 1.000060 GCAAGAAAGCAGCAACCATCA 60.000 47.619 0.00 0.00 0.00 3.07
3118 3235 2.925306 GCAAGAAAGCAGCAACCATCAG 60.925 50.000 0.00 0.00 0.00 2.90
3131 3248 1.052124 CCATCAGGGGCCGGTACTTA 61.052 60.000 1.90 0.00 0.00 2.24
3140 3257 1.488527 GCCGGTACTTAGAAGCATCG 58.511 55.000 1.90 0.00 0.00 3.84
3159 3276 7.011828 GCATCGGCTAAAGTTCTTATTAACA 57.988 36.000 0.00 0.00 36.96 2.41
3160 3277 7.126398 GCATCGGCTAAAGTTCTTATTAACAG 58.874 38.462 0.00 0.00 36.96 3.16
3161 3278 7.201617 GCATCGGCTAAAGTTCTTATTAACAGT 60.202 37.037 0.00 0.00 36.96 3.55
3162 3279 8.665685 CATCGGCTAAAGTTCTTATTAACAGTT 58.334 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.641777 ATTGCTTGCTTCTTTTCGAAAAC 57.358 34.783 19.08 10.20 0.00 2.43
1 2 7.763172 TTAATTGCTTGCTTCTTTTCGAAAA 57.237 28.000 21.35 21.35 0.00 2.29
2 3 7.491048 AGTTTAATTGCTTGCTTCTTTTCGAAA 59.509 29.630 6.47 6.47 0.00 3.46
3 4 6.978080 AGTTTAATTGCTTGCTTCTTTTCGAA 59.022 30.769 0.00 0.00 0.00 3.71
4 5 6.503524 AGTTTAATTGCTTGCTTCTTTTCGA 58.496 32.000 0.00 0.00 0.00 3.71
5 6 6.753897 AGTTTAATTGCTTGCTTCTTTTCG 57.246 33.333 0.00 0.00 0.00 3.46
6 7 8.130307 TCAAGTTTAATTGCTTGCTTCTTTTC 57.870 30.769 11.79 0.00 41.15 2.29
7 8 8.491331 TTCAAGTTTAATTGCTTGCTTCTTTT 57.509 26.923 11.79 0.00 41.15 2.27
8 9 8.491331 TTTCAAGTTTAATTGCTTGCTTCTTT 57.509 26.923 11.79 0.00 41.15 2.52
9 10 8.491331 TTTTCAAGTTTAATTGCTTGCTTCTT 57.509 26.923 11.79 0.00 41.15 2.52
10 11 7.765819 ACTTTTCAAGTTTAATTGCTTGCTTCT 59.234 29.630 11.79 0.00 39.04 2.85
11 12 7.847564 CACTTTTCAAGTTTAATTGCTTGCTTC 59.152 33.333 11.79 0.00 40.46 3.86
12 13 7.201635 CCACTTTTCAAGTTTAATTGCTTGCTT 60.202 33.333 11.79 0.00 40.46 3.91
13 14 6.258507 CCACTTTTCAAGTTTAATTGCTTGCT 59.741 34.615 11.79 0.00 40.46 3.91
14 15 6.421405 CCACTTTTCAAGTTTAATTGCTTGC 58.579 36.000 11.79 0.00 40.46 4.01
15 16 6.036953 TGCCACTTTTCAAGTTTAATTGCTTG 59.963 34.615 10.88 10.88 40.46 4.01
16 17 6.112058 TGCCACTTTTCAAGTTTAATTGCTT 58.888 32.000 0.00 0.00 40.46 3.91
17 18 5.669477 TGCCACTTTTCAAGTTTAATTGCT 58.331 33.333 0.00 0.00 40.46 3.91
18 19 5.982465 TGCCACTTTTCAAGTTTAATTGC 57.018 34.783 0.00 0.00 40.46 3.56
19 20 7.691877 GTGTTTGCCACTTTTCAAGTTTAATTG 59.308 33.333 0.00 0.00 40.46 2.32
20 21 7.389053 TGTGTTTGCCACTTTTCAAGTTTAATT 59.611 29.630 0.00 0.00 44.81 1.40
21 22 6.876257 TGTGTTTGCCACTTTTCAAGTTTAAT 59.124 30.769 0.00 0.00 44.81 1.40
22 23 6.223852 TGTGTTTGCCACTTTTCAAGTTTAA 58.776 32.000 0.00 0.00 44.81 1.52
23 24 5.784177 TGTGTTTGCCACTTTTCAAGTTTA 58.216 33.333 0.00 0.00 44.81 2.01
24 25 4.636249 TGTGTTTGCCACTTTTCAAGTTT 58.364 34.783 0.00 0.00 44.81 2.66
25 26 4.244862 CTGTGTTTGCCACTTTTCAAGTT 58.755 39.130 0.00 0.00 44.81 2.66
26 27 3.368323 CCTGTGTTTGCCACTTTTCAAGT 60.368 43.478 0.00 0.00 44.81 3.16
27 28 3.119173 TCCTGTGTTTGCCACTTTTCAAG 60.119 43.478 0.00 0.00 44.81 3.02
28 29 2.828520 TCCTGTGTTTGCCACTTTTCAA 59.171 40.909 0.00 0.00 44.81 2.69
29 30 2.165437 GTCCTGTGTTTGCCACTTTTCA 59.835 45.455 0.00 0.00 44.81 2.69
30 31 2.481276 GGTCCTGTGTTTGCCACTTTTC 60.481 50.000 0.00 0.00 44.81 2.29
31 32 1.480545 GGTCCTGTGTTTGCCACTTTT 59.519 47.619 0.00 0.00 44.81 2.27
32 33 1.111277 GGTCCTGTGTTTGCCACTTT 58.889 50.000 0.00 0.00 44.81 2.66
33 34 0.755327 GGGTCCTGTGTTTGCCACTT 60.755 55.000 0.00 0.00 44.81 3.16
34 35 1.152756 GGGTCCTGTGTTTGCCACT 60.153 57.895 0.00 0.00 44.81 4.00
35 36 0.109723 TAGGGTCCTGTGTTTGCCAC 59.890 55.000 0.00 0.00 44.78 5.01
36 37 0.109723 GTAGGGTCCTGTGTTTGCCA 59.890 55.000 0.00 0.00 0.00 4.92
37 38 0.608308 GGTAGGGTCCTGTGTTTGCC 60.608 60.000 0.00 0.00 0.00 4.52
38 39 0.953960 CGGTAGGGTCCTGTGTTTGC 60.954 60.000 0.00 0.00 0.00 3.68
39 40 0.395312 ACGGTAGGGTCCTGTGTTTG 59.605 55.000 0.00 0.00 0.00 2.93
40 41 0.683412 GACGGTAGGGTCCTGTGTTT 59.317 55.000 0.00 0.00 0.00 2.83
41 42 0.470456 TGACGGTAGGGTCCTGTGTT 60.470 55.000 0.00 0.00 36.07 3.32
42 43 0.470456 TTGACGGTAGGGTCCTGTGT 60.470 55.000 0.00 0.00 36.07 3.72
43 44 0.246635 CTTGACGGTAGGGTCCTGTG 59.753 60.000 0.00 0.00 36.07 3.66
44 45 0.178941 ACTTGACGGTAGGGTCCTGT 60.179 55.000 0.00 0.00 36.07 4.00
45 46 0.246635 CACTTGACGGTAGGGTCCTG 59.753 60.000 0.00 0.00 36.07 3.86
46 47 1.542187 GCACTTGACGGTAGGGTCCT 61.542 60.000 0.00 0.00 36.07 3.85
47 48 1.079336 GCACTTGACGGTAGGGTCC 60.079 63.158 0.00 0.00 36.07 4.46
48 49 1.079336 GGCACTTGACGGTAGGGTC 60.079 63.158 0.00 0.00 37.45 4.46
49 50 2.590114 GGGCACTTGACGGTAGGGT 61.590 63.158 0.00 0.00 0.00 4.34
50 51 2.267961 GGGCACTTGACGGTAGGG 59.732 66.667 0.00 0.00 0.00 3.53
51 52 1.079127 CAGGGCACTTGACGGTAGG 60.079 63.158 0.00 0.00 0.00 3.18
52 53 1.079127 CCAGGGCACTTGACGGTAG 60.079 63.158 0.00 0.00 0.00 3.18
53 54 3.065306 CCAGGGCACTTGACGGTA 58.935 61.111 0.00 0.00 0.00 4.02
54 55 4.643387 GCCAGGGCACTTGACGGT 62.643 66.667 5.20 0.00 41.49 4.83
57 58 3.248446 TACCGCCAGGGCACTTGAC 62.248 63.158 11.42 0.00 43.47 3.18
58 59 2.925706 TACCGCCAGGGCACTTGA 60.926 61.111 11.42 0.00 43.47 3.02
59 60 2.436646 CTACCGCCAGGGCACTTG 60.437 66.667 11.42 0.00 43.47 3.16
60 61 3.717294 CCTACCGCCAGGGCACTT 61.717 66.667 11.42 0.00 43.47 3.16
66 67 2.363795 TCTGACCCTACCGCCAGG 60.364 66.667 0.00 0.00 45.13 4.45
67 68 2.893398 GTCTGACCCTACCGCCAG 59.107 66.667 0.00 0.00 0.00 4.85
68 69 3.066190 CGTCTGACCCTACCGCCA 61.066 66.667 1.55 0.00 0.00 5.69
69 70 3.834799 CCGTCTGACCCTACCGCC 61.835 72.222 1.55 0.00 0.00 6.13
70 71 4.509737 GCCGTCTGACCCTACCGC 62.510 72.222 1.55 0.00 0.00 5.68
71 72 2.898920 TAGGCCGTCTGACCCTACCG 62.899 65.000 8.27 0.00 0.00 4.02
72 73 1.076485 TAGGCCGTCTGACCCTACC 60.076 63.158 8.27 2.76 0.00 3.18
73 74 1.390383 GGTAGGCCGTCTGACCCTAC 61.390 65.000 23.96 23.96 46.60 3.18
74 75 1.076485 GGTAGGCCGTCTGACCCTA 60.076 63.158 8.27 8.27 0.00 3.53
75 76 2.363925 GGTAGGCCGTCTGACCCT 60.364 66.667 9.98 9.98 0.00 4.34
86 87 1.302192 TCTTGTGTTGGCGGTAGGC 60.302 57.895 0.00 0.00 44.11 3.93
87 88 0.953960 GGTCTTGTGTTGGCGGTAGG 60.954 60.000 0.00 0.00 0.00 3.18
88 89 0.953960 GGGTCTTGTGTTGGCGGTAG 60.954 60.000 0.00 0.00 0.00 3.18
89 90 1.071814 GGGTCTTGTGTTGGCGGTA 59.928 57.895 0.00 0.00 0.00 4.02
90 91 2.203294 GGGTCTTGTGTTGGCGGT 60.203 61.111 0.00 0.00 0.00 5.68
91 92 2.113139 AGGGTCTTGTGTTGGCGG 59.887 61.111 0.00 0.00 0.00 6.13
92 93 2.908073 GCAGGGTCTTGTGTTGGCG 61.908 63.158 0.00 0.00 0.00 5.69
93 94 2.908073 CGCAGGGTCTTGTGTTGGC 61.908 63.158 0.00 0.00 0.00 4.52
94 95 0.606401 ATCGCAGGGTCTTGTGTTGG 60.606 55.000 0.00 0.00 0.00 3.77
95 96 1.238439 AATCGCAGGGTCTTGTGTTG 58.762 50.000 0.00 0.00 0.00 3.33
96 97 1.981256 AAATCGCAGGGTCTTGTGTT 58.019 45.000 0.00 0.00 0.00 3.32
97 98 1.981256 AAAATCGCAGGGTCTTGTGT 58.019 45.000 0.00 0.00 0.00 3.72
98 99 2.665519 CGAAAAATCGCAGGGTCTTGTG 60.666 50.000 0.00 0.00 0.00 3.33
99 100 1.535462 CGAAAAATCGCAGGGTCTTGT 59.465 47.619 0.00 0.00 0.00 3.16
100 101 1.535462 ACGAAAAATCGCAGGGTCTTG 59.465 47.619 0.00 0.00 36.44 3.02
101 102 1.892209 ACGAAAAATCGCAGGGTCTT 58.108 45.000 0.00 0.00 36.44 3.01
102 103 1.892209 AACGAAAAATCGCAGGGTCT 58.108 45.000 0.00 0.00 36.44 3.85
103 104 2.481185 TGTAACGAAAAATCGCAGGGTC 59.519 45.455 0.00 0.00 36.44 4.46
104 105 2.482721 CTGTAACGAAAAATCGCAGGGT 59.517 45.455 0.00 0.00 36.44 4.34
105 106 2.739913 TCTGTAACGAAAAATCGCAGGG 59.260 45.455 0.00 0.00 36.44 4.45
106 107 4.394795 CTTCTGTAACGAAAAATCGCAGG 58.605 43.478 0.00 0.00 36.44 4.85
107 108 3.840763 GCTTCTGTAACGAAAAATCGCAG 59.159 43.478 0.00 0.00 36.44 5.18
108 109 3.496884 AGCTTCTGTAACGAAAAATCGCA 59.503 39.130 0.00 0.00 36.44 5.10
109 110 4.066710 AGCTTCTGTAACGAAAAATCGC 57.933 40.909 0.00 0.00 36.44 4.58
110 111 5.278367 CGAAAGCTTCTGTAACGAAAAATCG 59.722 40.000 0.00 0.00 39.31 3.34
111 112 5.564127 CCGAAAGCTTCTGTAACGAAAAATC 59.436 40.000 0.00 0.00 0.00 2.17
112 113 5.237779 TCCGAAAGCTTCTGTAACGAAAAAT 59.762 36.000 0.00 0.00 0.00 1.82
113 114 4.571580 TCCGAAAGCTTCTGTAACGAAAAA 59.428 37.500 0.00 0.00 0.00 1.94
114 115 4.121317 TCCGAAAGCTTCTGTAACGAAAA 58.879 39.130 0.00 0.00 0.00 2.29
115 116 3.719924 TCCGAAAGCTTCTGTAACGAAA 58.280 40.909 0.00 0.00 0.00 3.46
116 117 3.314553 CTCCGAAAGCTTCTGTAACGAA 58.685 45.455 0.00 0.00 0.00 3.85
117 118 2.352421 CCTCCGAAAGCTTCTGTAACGA 60.352 50.000 0.00 0.00 0.00 3.85
118 119 1.993370 CCTCCGAAAGCTTCTGTAACG 59.007 52.381 0.00 0.00 0.00 3.18
119 120 1.732809 GCCTCCGAAAGCTTCTGTAAC 59.267 52.381 0.00 0.00 0.00 2.50
120 121 1.346395 TGCCTCCGAAAGCTTCTGTAA 59.654 47.619 0.00 0.00 0.00 2.41
121 122 0.973632 TGCCTCCGAAAGCTTCTGTA 59.026 50.000 0.00 0.00 0.00 2.74
122 123 0.108585 TTGCCTCCGAAAGCTTCTGT 59.891 50.000 0.00 0.00 0.00 3.41
123 124 1.238439 TTTGCCTCCGAAAGCTTCTG 58.762 50.000 0.00 0.00 0.00 3.02
124 125 1.981256 TTTTGCCTCCGAAAGCTTCT 58.019 45.000 0.00 0.00 0.00 2.85
125 126 2.394708 GTTTTTGCCTCCGAAAGCTTC 58.605 47.619 0.00 0.00 0.00 3.86
126 127 1.068588 GGTTTTTGCCTCCGAAAGCTT 59.931 47.619 0.00 0.00 0.00 3.74
127 128 0.673985 GGTTTTTGCCTCCGAAAGCT 59.326 50.000 0.00 0.00 0.00 3.74
128 129 0.319555 GGGTTTTTGCCTCCGAAAGC 60.320 55.000 0.00 0.00 0.00 3.51
129 130 1.036707 TGGGTTTTTGCCTCCGAAAG 58.963 50.000 0.00 0.00 0.00 2.62
130 131 1.410882 CTTGGGTTTTTGCCTCCGAAA 59.589 47.619 0.00 0.00 0.00 3.46
131 132 1.036707 CTTGGGTTTTTGCCTCCGAA 58.963 50.000 0.00 0.00 0.00 4.30
132 133 1.460273 GCTTGGGTTTTTGCCTCCGA 61.460 55.000 0.00 0.00 0.00 4.55
133 134 1.006220 GCTTGGGTTTTTGCCTCCG 60.006 57.895 0.00 0.00 0.00 4.63
134 135 1.371183 GGCTTGGGTTTTTGCCTCC 59.629 57.895 0.00 0.00 41.92 4.30
135 136 0.686789 ATGGCTTGGGTTTTTGCCTC 59.313 50.000 0.00 0.00 45.11 4.70
136 137 1.623311 GTATGGCTTGGGTTTTTGCCT 59.377 47.619 0.00 0.00 45.11 4.75
137 138 1.338674 GGTATGGCTTGGGTTTTTGCC 60.339 52.381 0.00 0.00 45.10 4.52
138 139 1.338674 GGGTATGGCTTGGGTTTTTGC 60.339 52.381 0.00 0.00 0.00 3.68
139 140 2.256306 AGGGTATGGCTTGGGTTTTTG 58.744 47.619 0.00 0.00 0.00 2.44
140 141 2.713828 AGGGTATGGCTTGGGTTTTT 57.286 45.000 0.00 0.00 0.00 1.94
141 142 3.687264 CGATAGGGTATGGCTTGGGTTTT 60.687 47.826 0.00 0.00 0.00 2.43
142 143 2.158667 CGATAGGGTATGGCTTGGGTTT 60.159 50.000 0.00 0.00 0.00 3.27
143 144 1.420138 CGATAGGGTATGGCTTGGGTT 59.580 52.381 0.00 0.00 0.00 4.11
144 145 1.056660 CGATAGGGTATGGCTTGGGT 58.943 55.000 0.00 0.00 0.00 4.51
145 146 1.002087 GACGATAGGGTATGGCTTGGG 59.998 57.143 0.00 0.00 43.77 4.12
146 147 1.691976 TGACGATAGGGTATGGCTTGG 59.308 52.381 0.00 0.00 43.77 3.61
147 148 2.365617 AGTGACGATAGGGTATGGCTTG 59.634 50.000 0.00 0.00 43.77 4.01
148 149 2.679082 AGTGACGATAGGGTATGGCTT 58.321 47.619 0.00 0.00 43.77 4.35
149 150 2.383442 AGTGACGATAGGGTATGGCT 57.617 50.000 0.00 0.00 43.77 4.75
150 151 2.607282 CGAAGTGACGATAGGGTATGGC 60.607 54.545 0.00 0.00 43.77 4.40
151 152 2.621998 ACGAAGTGACGATAGGGTATGG 59.378 50.000 0.00 0.00 42.51 2.74
152 153 3.984508 ACGAAGTGACGATAGGGTATG 57.015 47.619 0.00 0.00 42.51 2.39
167 168 2.046892 CCAGCACCCCTGACGAAG 60.047 66.667 0.00 0.00 44.64 3.79
168 169 4.329545 GCCAGCACCCCTGACGAA 62.330 66.667 0.00 0.00 44.64 3.85
171 172 2.527951 CTACTGCCAGCACCCCTGAC 62.528 65.000 0.00 0.00 44.64 3.51
172 173 2.203922 TACTGCCAGCACCCCTGA 60.204 61.111 0.00 0.00 44.64 3.86
173 174 2.270205 CTACTGCCAGCACCCCTG 59.730 66.667 0.00 0.00 41.41 4.45
174 175 3.011517 CCTACTGCCAGCACCCCT 61.012 66.667 0.00 0.00 0.00 4.79
175 176 4.115199 CCCTACTGCCAGCACCCC 62.115 72.222 0.00 0.00 0.00 4.95
176 177 1.559065 TAACCCTACTGCCAGCACCC 61.559 60.000 0.00 0.00 0.00 4.61
177 178 0.107654 CTAACCCTACTGCCAGCACC 60.108 60.000 0.00 0.00 0.00 5.01
178 179 0.902531 TCTAACCCTACTGCCAGCAC 59.097 55.000 0.00 0.00 0.00 4.40
179 180 0.902531 GTCTAACCCTACTGCCAGCA 59.097 55.000 0.00 0.00 0.00 4.41
180 181 0.902531 TGTCTAACCCTACTGCCAGC 59.097 55.000 0.00 0.00 0.00 4.85
181 182 1.134670 GCTGTCTAACCCTACTGCCAG 60.135 57.143 0.00 0.00 35.31 4.85
182 183 0.902531 GCTGTCTAACCCTACTGCCA 59.097 55.000 0.00 0.00 35.31 4.92
183 184 3.762674 GCTGTCTAACCCTACTGCC 57.237 57.895 0.00 0.00 35.31 4.85
184 185 1.196012 AGGCTGTCTAACCCTACTGC 58.804 55.000 0.00 0.00 39.15 4.40
188 189 2.385803 GCAGTAGGCTGTCTAACCCTA 58.614 52.381 0.00 0.00 44.32 3.53
189 190 1.196012 GCAGTAGGCTGTCTAACCCT 58.804 55.000 0.00 0.00 44.32 4.34
190 191 0.178301 GGCAGTAGGCTGTCTAACCC 59.822 60.000 0.00 0.00 43.60 4.11
191 192 0.902531 TGGCAGTAGGCTGTCTAACC 59.097 55.000 0.00 1.99 46.84 2.85
192 193 1.134670 CCTGGCAGTAGGCTGTCTAAC 60.135 57.143 14.43 0.00 46.84 2.34
193 194 1.195115 CCTGGCAGTAGGCTGTCTAA 58.805 55.000 14.43 0.00 46.84 2.10
194 195 0.687757 CCCTGGCAGTAGGCTGTCTA 60.688 60.000 14.43 0.00 46.84 2.59
195 196 1.992277 CCCTGGCAGTAGGCTGTCT 60.992 63.158 14.43 0.00 46.84 3.41
196 197 2.245438 GACCCTGGCAGTAGGCTGTC 62.245 65.000 14.43 6.31 46.90 3.51
197 198 2.203998 ACCCTGGCAGTAGGCTGT 60.204 61.111 14.43 0.00 44.32 4.40
198 199 2.586792 GACCCTGGCAGTAGGCTG 59.413 66.667 14.43 0.00 45.23 4.85
199 200 2.689034 GGACCCTGGCAGTAGGCT 60.689 66.667 14.43 0.00 44.01 4.58
200 201 2.689034 AGGACCCTGGCAGTAGGC 60.689 66.667 14.43 6.41 43.74 3.93
201 202 3.313874 CAGGACCCTGGCAGTAGG 58.686 66.667 14.43 10.97 40.17 3.18
209 210 3.470888 CCTACCGCCAGGACCCTG 61.471 72.222 9.06 9.06 43.26 4.45
210 211 4.798682 CCCTACCGCCAGGACCCT 62.799 72.222 0.00 0.00 41.02 4.34
212 213 3.782443 CACCCTACCGCCAGGACC 61.782 72.222 0.00 0.00 41.02 4.46
213 214 4.468689 GCACCCTACCGCCAGGAC 62.469 72.222 0.00 0.00 41.02 3.85
214 215 2.808761 TTAGCACCCTACCGCCAGGA 62.809 60.000 0.00 0.00 41.02 3.86
215 216 1.696097 ATTAGCACCCTACCGCCAGG 61.696 60.000 0.00 0.00 45.13 4.45
216 217 0.249911 GATTAGCACCCTACCGCCAG 60.250 60.000 0.00 0.00 0.00 4.85
217 218 1.692173 GGATTAGCACCCTACCGCCA 61.692 60.000 0.00 0.00 0.00 5.69
218 219 1.070957 GGATTAGCACCCTACCGCC 59.929 63.158 0.00 0.00 0.00 6.13
219 220 0.532196 GTGGATTAGCACCCTACCGC 60.532 60.000 0.00 0.00 0.00 5.68
220 221 0.249322 CGTGGATTAGCACCCTACCG 60.249 60.000 0.00 0.00 0.00 4.02
221 222 0.828677 ACGTGGATTAGCACCCTACC 59.171 55.000 0.00 0.00 0.00 3.18
222 223 1.479323 TGACGTGGATTAGCACCCTAC 59.521 52.381 0.00 0.00 0.00 3.18
223 224 1.754803 CTGACGTGGATTAGCACCCTA 59.245 52.381 0.00 0.00 0.00 3.53
224 225 0.537188 CTGACGTGGATTAGCACCCT 59.463 55.000 0.00 0.00 0.00 4.34
225 226 1.090052 GCTGACGTGGATTAGCACCC 61.090 60.000 0.00 0.00 36.24 4.61
226 227 0.391130 TGCTGACGTGGATTAGCACC 60.391 55.000 0.00 0.00 40.88 5.01
227 228 3.137484 TGCTGACGTGGATTAGCAC 57.863 52.632 0.00 0.00 40.88 4.40
229 230 1.328680 CACATGCTGACGTGGATTAGC 59.671 52.381 0.00 0.00 37.10 3.09
236 237 1.347097 CGTCTCCACATGCTGACGTG 61.347 60.000 16.70 0.00 44.65 4.49
237 238 1.080501 CGTCTCCACATGCTGACGT 60.081 57.895 16.70 0.00 44.65 4.34
238 239 3.772636 CGTCTCCACATGCTGACG 58.227 61.111 13.14 13.14 44.41 4.35
239 240 2.103042 GCCGTCTCCACATGCTGAC 61.103 63.158 0.00 0.00 0.00 3.51
240 241 2.265739 GCCGTCTCCACATGCTGA 59.734 61.111 0.00 0.00 0.00 4.26
241 242 2.821366 GGCCGTCTCCACATGCTG 60.821 66.667 0.00 0.00 0.00 4.41
242 243 4.457496 CGGCCGTCTCCACATGCT 62.457 66.667 19.50 0.00 0.00 3.79
262 263 4.222847 GATGCGACGGAGGGGGAC 62.223 72.222 0.00 0.00 0.00 4.46
265 266 2.520982 TAGGATGCGACGGAGGGG 60.521 66.667 0.00 0.00 0.00 4.79
266 267 1.828660 AGTAGGATGCGACGGAGGG 60.829 63.158 0.00 0.00 0.00 4.30
267 268 1.360551 CAGTAGGATGCGACGGAGG 59.639 63.158 0.00 0.00 0.00 4.30
268 269 1.299468 GCAGTAGGATGCGACGGAG 60.299 63.158 1.66 0.00 36.28 4.63
269 270 2.805546 GCAGTAGGATGCGACGGA 59.194 61.111 1.66 0.00 36.28 4.69
275 276 0.601311 GATCCGTGGCAGTAGGATGC 60.601 60.000 19.70 10.30 44.13 3.91
276 277 0.034059 GGATCCGTGGCAGTAGGATG 59.966 60.000 19.70 0.00 44.13 3.51
277 278 0.105453 AGGATCCGTGGCAGTAGGAT 60.105 55.000 16.10 16.10 46.51 3.24
278 279 1.043116 CAGGATCCGTGGCAGTAGGA 61.043 60.000 5.98 8.46 38.56 2.94
279 280 1.443407 CAGGATCCGTGGCAGTAGG 59.557 63.158 5.98 0.00 0.00 3.18
280 281 1.443407 CCAGGATCCGTGGCAGTAG 59.557 63.158 14.83 0.00 0.00 2.57
281 282 3.628989 CCAGGATCCGTGGCAGTA 58.371 61.111 14.83 0.00 0.00 2.74
286 287 3.151710 TACCGCCAGGATCCGTGG 61.152 66.667 20.19 20.19 41.02 4.94
287 288 2.417516 CTACCGCCAGGATCCGTG 59.582 66.667 5.98 5.19 41.02 4.94
288 289 2.838225 CCTACCGCCAGGATCCGT 60.838 66.667 5.98 0.00 41.02 4.69
289 290 2.432300 AACCTACCGCCAGGATCCG 61.432 63.158 5.98 1.07 41.02 4.18
290 291 1.146263 CAACCTACCGCCAGGATCC 59.854 63.158 2.48 2.48 41.02 3.36
291 292 0.179081 GACAACCTACCGCCAGGATC 60.179 60.000 7.47 0.00 41.02 3.36
292 293 0.617820 AGACAACCTACCGCCAGGAT 60.618 55.000 7.47 0.00 41.02 3.24
293 294 0.040058 TAGACAACCTACCGCCAGGA 59.960 55.000 7.47 0.00 41.02 3.86
294 295 0.899720 TTAGACAACCTACCGCCAGG 59.100 55.000 0.00 0.00 45.13 4.45
295 296 2.005971 GTTAGACAACCTACCGCCAG 57.994 55.000 0.00 0.00 0.00 4.85
305 306 2.673326 GCTGTCGGTAGGGTTAGACAAC 60.673 54.545 0.00 0.00 42.17 3.32
306 307 1.547372 GCTGTCGGTAGGGTTAGACAA 59.453 52.381 0.00 0.00 42.17 3.18
307 308 1.180029 GCTGTCGGTAGGGTTAGACA 58.820 55.000 0.00 0.00 40.77 3.41
308 309 1.180029 TGCTGTCGGTAGGGTTAGAC 58.820 55.000 0.00 0.00 0.00 2.59
309 310 2.029623 GATGCTGTCGGTAGGGTTAGA 58.970 52.381 0.00 0.00 0.00 2.10
310 311 1.068741 GGATGCTGTCGGTAGGGTTAG 59.931 57.143 0.00 0.00 0.00 2.34
311 312 1.117150 GGATGCTGTCGGTAGGGTTA 58.883 55.000 0.00 0.00 0.00 2.85
312 313 1.623542 GGGATGCTGTCGGTAGGGTT 61.624 60.000 0.00 0.00 0.00 4.11
313 314 2.064581 GGGATGCTGTCGGTAGGGT 61.065 63.158 0.00 0.00 0.00 4.34
314 315 1.762460 AGGGATGCTGTCGGTAGGG 60.762 63.158 0.00 0.00 0.00 3.53
315 316 1.443407 CAGGGATGCTGTCGGTAGG 59.557 63.158 0.00 0.00 0.00 3.18
316 317 1.443407 CCAGGGATGCTGTCGGTAG 59.557 63.158 0.00 0.00 0.00 3.18
317 318 2.731571 GCCAGGGATGCTGTCGGTA 61.732 63.158 0.00 0.00 0.00 4.02
318 319 4.101448 GCCAGGGATGCTGTCGGT 62.101 66.667 0.00 0.00 0.00 4.69
321 322 2.650813 CTACCGCCAGGGATGCTGTC 62.651 65.000 0.00 0.00 43.47 3.51
322 323 2.687200 TACCGCCAGGGATGCTGT 60.687 61.111 0.00 0.00 43.47 4.40
323 324 2.109799 CTACCGCCAGGGATGCTG 59.890 66.667 0.00 0.00 43.47 4.41
324 325 3.866582 GCTACCGCCAGGGATGCT 61.867 66.667 0.00 0.00 43.47 3.79
325 326 3.697439 TTGCTACCGCCAGGGATGC 62.697 63.158 0.00 0.00 43.47 3.91
326 327 0.679640 TTTTGCTACCGCCAGGGATG 60.680 55.000 0.00 0.00 43.47 3.51
327 328 0.394352 CTTTTGCTACCGCCAGGGAT 60.394 55.000 0.00 0.00 43.47 3.85
328 329 1.002624 CTTTTGCTACCGCCAGGGA 60.003 57.895 0.00 0.00 43.47 4.20
329 330 1.002624 TCTTTTGCTACCGCCAGGG 60.003 57.895 0.00 0.00 43.47 4.45
330 331 0.321653 ACTCTTTTGCTACCGCCAGG 60.322 55.000 0.00 0.00 45.13 4.45
331 332 1.079503 GACTCTTTTGCTACCGCCAG 58.920 55.000 0.00 0.00 34.43 4.85
332 333 0.394938 TGACTCTTTTGCTACCGCCA 59.605 50.000 0.00 0.00 34.43 5.69
333 334 1.519408 TTGACTCTTTTGCTACCGCC 58.481 50.000 0.00 0.00 34.43 6.13
334 335 3.426292 GGATTTGACTCTTTTGCTACCGC 60.426 47.826 0.00 0.00 0.00 5.68
335 336 3.127030 GGGATTTGACTCTTTTGCTACCG 59.873 47.826 0.00 0.00 0.00 4.02
336 337 3.127030 CGGGATTTGACTCTTTTGCTACC 59.873 47.826 0.00 0.00 0.00 3.18
337 338 4.000988 TCGGGATTTGACTCTTTTGCTAC 58.999 43.478 0.00 0.00 0.00 3.58
338 339 4.280436 TCGGGATTTGACTCTTTTGCTA 57.720 40.909 0.00 0.00 0.00 3.49
339 340 3.140325 TCGGGATTTGACTCTTTTGCT 57.860 42.857 0.00 0.00 0.00 3.91
340 341 3.915437 TTCGGGATTTGACTCTTTTGC 57.085 42.857 0.00 0.00 0.00 3.68
363 364 1.967779 CTCACCCCGGTTGGAATTTTT 59.032 47.619 0.00 0.00 37.49 1.94
364 365 1.146152 TCTCACCCCGGTTGGAATTTT 59.854 47.619 0.00 0.00 37.49 1.82
365 366 0.774908 TCTCACCCCGGTTGGAATTT 59.225 50.000 0.00 0.00 37.49 1.82
366 367 0.999712 ATCTCACCCCGGTTGGAATT 59.000 50.000 0.00 0.00 37.49 2.17
367 368 0.546598 GATCTCACCCCGGTTGGAAT 59.453 55.000 0.00 0.00 37.49 3.01
368 369 1.559065 GGATCTCACCCCGGTTGGAA 61.559 60.000 0.00 0.00 37.49 3.53
369 370 1.993391 GGATCTCACCCCGGTTGGA 60.993 63.158 0.00 0.00 37.49 3.53
370 371 1.995626 AGGATCTCACCCCGGTTGG 60.996 63.158 0.00 0.00 0.00 3.77
371 372 1.221840 CAGGATCTCACCCCGGTTG 59.778 63.158 0.00 0.00 0.00 3.77
372 373 0.546747 TTCAGGATCTCACCCCGGTT 60.547 55.000 0.00 0.00 0.00 4.44
373 374 0.326618 ATTCAGGATCTCACCCCGGT 60.327 55.000 0.00 0.00 0.00 5.28
374 375 0.839946 AATTCAGGATCTCACCCCGG 59.160 55.000 0.00 0.00 0.00 5.73
375 376 1.959042 CAATTCAGGATCTCACCCCG 58.041 55.000 0.00 0.00 0.00 5.73
376 377 1.213926 AGCAATTCAGGATCTCACCCC 59.786 52.381 0.00 0.00 0.00 4.95
377 378 2.725221 AGCAATTCAGGATCTCACCC 57.275 50.000 0.00 0.00 0.00 4.61
378 379 3.501445 GCATAGCAATTCAGGATCTCACC 59.499 47.826 0.00 0.00 0.00 4.02
379 380 3.186001 CGCATAGCAATTCAGGATCTCAC 59.814 47.826 0.00 0.00 0.00 3.51
380 381 3.070015 TCGCATAGCAATTCAGGATCTCA 59.930 43.478 0.00 0.00 0.00 3.27
381 382 3.657634 TCGCATAGCAATTCAGGATCTC 58.342 45.455 0.00 0.00 0.00 2.75
382 383 3.758755 TCGCATAGCAATTCAGGATCT 57.241 42.857 0.00 0.00 0.00 2.75
383 384 4.818534 TTTCGCATAGCAATTCAGGATC 57.181 40.909 0.00 0.00 0.00 3.36
384 385 4.037208 CCTTTTCGCATAGCAATTCAGGAT 59.963 41.667 0.00 0.00 0.00 3.24
385 386 3.378112 CCTTTTCGCATAGCAATTCAGGA 59.622 43.478 0.00 0.00 0.00 3.86
386 387 3.489738 CCCTTTTCGCATAGCAATTCAGG 60.490 47.826 0.00 0.00 0.00 3.86
387 388 3.129287 ACCCTTTTCGCATAGCAATTCAG 59.871 43.478 0.00 0.00 0.00 3.02
388 389 3.088532 ACCCTTTTCGCATAGCAATTCA 58.911 40.909 0.00 0.00 0.00 2.57
389 390 3.128589 TGACCCTTTTCGCATAGCAATTC 59.871 43.478 0.00 0.00 0.00 2.17
390 391 3.088532 TGACCCTTTTCGCATAGCAATT 58.911 40.909 0.00 0.00 0.00 2.32
391 392 2.722094 TGACCCTTTTCGCATAGCAAT 58.278 42.857 0.00 0.00 0.00 3.56
392 393 2.192664 TGACCCTTTTCGCATAGCAA 57.807 45.000 0.00 0.00 0.00 3.91
393 394 2.192664 TTGACCCTTTTCGCATAGCA 57.807 45.000 0.00 0.00 0.00 3.49
394 395 3.242518 GTTTTGACCCTTTTCGCATAGC 58.757 45.455 0.00 0.00 0.00 2.97
395 396 4.226761 GTGTTTTGACCCTTTTCGCATAG 58.773 43.478 0.00 0.00 0.00 2.23
396 397 3.304123 CGTGTTTTGACCCTTTTCGCATA 60.304 43.478 0.00 0.00 0.00 3.14
397 398 2.542824 CGTGTTTTGACCCTTTTCGCAT 60.543 45.455 0.00 0.00 0.00 4.73
398 399 1.202200 CGTGTTTTGACCCTTTTCGCA 60.202 47.619 0.00 0.00 0.00 5.10
399 400 1.064357 TCGTGTTTTGACCCTTTTCGC 59.936 47.619 0.00 0.00 0.00 4.70
400 401 3.408288 TTCGTGTTTTGACCCTTTTCG 57.592 42.857 0.00 0.00 0.00 3.46
401 402 6.656314 AAATTTCGTGTTTTGACCCTTTTC 57.344 33.333 0.00 0.00 0.00 2.29
402 403 6.128145 CCAAAATTTCGTGTTTTGACCCTTTT 60.128 34.615 17.64 0.00 45.02 2.27
403 404 5.352846 CCAAAATTTCGTGTTTTGACCCTTT 59.647 36.000 17.64 0.00 45.02 3.11
404 405 4.873259 CCAAAATTTCGTGTTTTGACCCTT 59.127 37.500 17.64 0.00 45.02 3.95
405 406 4.438148 CCAAAATTTCGTGTTTTGACCCT 58.562 39.130 17.64 0.00 45.02 4.34
406 407 3.001838 GCCAAAATTTCGTGTTTTGACCC 59.998 43.478 17.64 7.55 45.02 4.46
407 408 3.302156 CGCCAAAATTTCGTGTTTTGACC 60.302 43.478 17.64 10.72 45.02 4.02
408 409 3.839600 GCGCCAAAATTTCGTGTTTTGAC 60.840 43.478 17.64 9.83 45.02 3.18
409 410 2.282820 GCGCCAAAATTTCGTGTTTTGA 59.717 40.909 17.64 0.00 45.02 2.69
410 411 2.623705 GCGCCAAAATTTCGTGTTTTG 58.376 42.857 0.00 12.41 43.00 2.44
411 412 1.256635 CGCGCCAAAATTTCGTGTTTT 59.743 42.857 0.00 0.00 0.00 2.43
412 413 0.849579 CGCGCCAAAATTTCGTGTTT 59.150 45.000 0.00 0.00 0.00 2.83
413 414 1.544777 GCGCGCCAAAATTTCGTGTT 61.545 50.000 23.24 0.00 36.27 3.32
414 415 2.014018 GCGCGCCAAAATTTCGTGT 61.014 52.632 23.24 0.00 36.27 4.49
415 416 1.543941 TTGCGCGCCAAAATTTCGTG 61.544 50.000 30.77 6.88 36.87 4.35
416 417 1.299468 TTGCGCGCCAAAATTTCGT 60.299 47.368 30.77 0.00 0.00 3.85
417 418 1.127620 GTTGCGCGCCAAAATTTCG 59.872 52.632 30.77 0.00 34.68 3.46
418 419 1.127620 CGTTGCGCGCCAAAATTTC 59.872 52.632 30.77 9.31 34.68 2.17
419 420 2.306581 CCGTTGCGCGCCAAAATTT 61.307 52.632 30.77 0.00 39.71 1.82
420 421 2.732843 CCGTTGCGCGCCAAAATT 60.733 55.556 30.77 0.00 39.71 1.82
441 442 1.284715 GGTTTGTTTCCGCCTTCCG 59.715 57.895 0.00 0.00 0.00 4.30
454 455 3.929417 TCGTTTACGAACACTGGTTTG 57.071 42.857 1.95 0.00 46.30 2.93
465 466 2.151736 CGCTTTCGAGTTTCGTTTACGA 59.848 45.455 0.03 0.03 41.35 3.43
476 477 2.228138 TGTGGTTTACGCTTTCGAGT 57.772 45.000 0.00 0.00 39.41 4.18
487 488 1.341531 CCCCGTTGCAAATGTGGTTTA 59.658 47.619 0.00 0.00 0.00 2.01
537 551 0.246360 ATCTCCGTTCGACACATGCA 59.754 50.000 0.00 0.00 0.00 3.96
644 658 1.741327 GCGCATCTGGCAAATCCCAT 61.741 55.000 0.30 0.00 45.17 4.00
645 659 2.417257 GCGCATCTGGCAAATCCCA 61.417 57.895 0.30 0.00 45.17 4.37
647 661 2.025156 CGCGCATCTGGCAAATCC 59.975 61.111 8.75 0.00 45.17 3.01
696 710 0.747255 CTCGTGGTGGTGGATAGAGG 59.253 60.000 0.00 0.00 0.00 3.69
826 840 6.202516 AGAAAGAAAGTAGAGACGATCTGG 57.797 41.667 5.36 0.00 39.20 3.86
839 853 7.698130 CGACATTCACAAAAGAAGAAAGAAAGT 59.302 33.333 0.00 0.00 0.00 2.66
846 860 5.501736 CGTGTCGACATTCACAAAAGAAGAA 60.502 40.000 23.12 0.00 34.66 2.52
993 1007 2.509336 GACGATGGTGAGCGGTGG 60.509 66.667 0.00 0.00 34.48 4.61
1001 1015 2.769617 GCGACAACGACGATGGTG 59.230 61.111 10.02 2.63 42.66 4.17
1002 1016 2.803670 CGCGACAACGACGATGGT 60.804 61.111 0.00 0.46 42.66 3.55
1003 1017 4.191485 GCGCGACAACGACGATGG 62.191 66.667 12.10 0.00 42.66 3.51
1152 1173 4.527038 AGAAGTAACGGAGGAGTTTGATCA 59.473 41.667 0.00 0.00 35.70 2.92
1179 1201 7.652524 AGCTGATAATAGGATGTCGACATAT 57.347 36.000 30.04 22.73 36.57 1.78
1180 1202 7.829706 AGTAGCTGATAATAGGATGTCGACATA 59.170 37.037 30.04 16.10 36.57 2.29
1208 1230 1.418637 AGCAACGGAGGACTTTTGGTA 59.581 47.619 0.00 0.00 0.00 3.25
1263 1323 2.218603 GGAGACTTTTTGACTGCCGAA 58.781 47.619 0.00 0.00 0.00 4.30
1269 1329 4.344390 AGGAGTAACGGAGACTTTTTGACT 59.656 41.667 0.00 0.00 0.00 3.41
1270 1330 4.629092 AGGAGTAACGGAGACTTTTTGAC 58.371 43.478 0.00 0.00 0.00 3.18
1271 1331 4.950205 AGGAGTAACGGAGACTTTTTGA 57.050 40.909 0.00 0.00 0.00 2.69
1272 1332 4.814771 ACAAGGAGTAACGGAGACTTTTTG 59.185 41.667 0.00 0.00 31.83 2.44
1273 1333 4.814771 CACAAGGAGTAACGGAGACTTTTT 59.185 41.667 0.00 0.00 0.00 1.94
1274 1334 4.141779 ACACAAGGAGTAACGGAGACTTTT 60.142 41.667 0.00 0.00 0.00 2.27
1275 1335 3.387050 ACACAAGGAGTAACGGAGACTTT 59.613 43.478 0.00 0.00 0.00 2.66
1276 1336 2.963782 ACACAAGGAGTAACGGAGACTT 59.036 45.455 0.00 0.00 0.00 3.01
1277 1337 2.595238 ACACAAGGAGTAACGGAGACT 58.405 47.619 0.00 0.00 0.00 3.24
1294 1354 4.989279 ACAGGAAATGCCATGATAACAC 57.011 40.909 0.00 0.00 40.02 3.32
1322 1384 5.352293 CACAAGCTCTGAATTATGCTACACA 59.648 40.000 0.00 0.00 35.09 3.72
1323 1385 5.220739 CCACAAGCTCTGAATTATGCTACAC 60.221 44.000 0.00 0.00 35.09 2.90
1324 1386 4.877823 CCACAAGCTCTGAATTATGCTACA 59.122 41.667 0.00 0.00 35.09 2.74
1325 1387 4.878397 ACCACAAGCTCTGAATTATGCTAC 59.122 41.667 0.00 0.00 35.09 3.58
1360 1422 0.880278 TGCAGACTGAACAGTTCGGC 60.880 55.000 20.42 13.53 42.66 5.54
1370 1432 1.070758 GTTCCACTTCCTGCAGACTGA 59.929 52.381 17.39 0.20 0.00 3.41
1371 1433 1.517242 GTTCCACTTCCTGCAGACTG 58.483 55.000 17.39 6.77 0.00 3.51
1447 1509 2.678934 TAGAAGGCCGTGGCGTCT 60.679 61.111 16.86 16.86 46.54 4.18
1548 1610 6.161855 AGTGAAGTCTCAGTATGTGTTGAA 57.838 37.500 0.00 0.00 37.40 2.69
1556 1618 4.575645 GGTAGCGTAGTGAAGTCTCAGTAT 59.424 45.833 0.00 0.00 39.22 2.12
1557 1619 3.937706 GGTAGCGTAGTGAAGTCTCAGTA 59.062 47.826 0.00 0.00 36.58 2.74
1558 1620 2.748532 GGTAGCGTAGTGAAGTCTCAGT 59.251 50.000 0.00 0.00 38.78 3.41
1559 1621 3.011119 AGGTAGCGTAGTGAAGTCTCAG 58.989 50.000 0.00 0.00 30.14 3.35
1560 1622 3.008330 GAGGTAGCGTAGTGAAGTCTCA 58.992 50.000 0.00 0.00 0.00 3.27
1561 1623 3.008330 TGAGGTAGCGTAGTGAAGTCTC 58.992 50.000 0.00 0.00 0.00 3.36
1574 1636 2.977772 ATGCTGAACTCTGAGGTAGC 57.022 50.000 17.53 17.53 0.00 3.58
1575 1637 3.382865 TGCTATGCTGAACTCTGAGGTAG 59.617 47.826 9.85 5.32 0.00 3.18
1579 1641 3.980134 CGTATGCTATGCTGAACTCTGAG 59.020 47.826 2.45 2.45 0.00 3.35
1620 1682 3.265791 CCTTCAGAGTTGCTCACATACC 58.734 50.000 0.00 0.00 32.06 2.73
1631 1696 3.498661 GGGGTTGAATGACCTTCAGAGTT 60.499 47.826 0.00 0.00 44.48 3.01
1642 1707 2.711009 ACACAAGAGAGGGGTTGAATGA 59.289 45.455 0.00 0.00 0.00 2.57
1646 1711 1.476833 GCAACACAAGAGAGGGGTTGA 60.477 52.381 11.36 0.00 40.86 3.18
1649 1714 1.062488 AGGCAACACAAGAGAGGGGT 61.062 55.000 0.00 0.00 41.41 4.95
1694 1760 4.857679 AGATCAGGTAGTAGTCGTTTCCT 58.142 43.478 0.00 0.00 0.00 3.36
1781 1847 1.593787 CCTCTTCTCGGCTTCAGCA 59.406 57.895 0.30 0.00 44.36 4.41
1790 1856 3.057596 GGTCAGATATCTGCCTCTTCTCG 60.058 52.174 25.27 0.80 43.46 4.04
1872 1938 2.656007 TGAACGACGCGGTCACAC 60.656 61.111 12.47 0.00 46.95 3.82
1890 1956 7.598278 ACAGACATTTCAACAGTTTTGTGTAA 58.402 30.769 0.00 0.00 37.67 2.41
1891 1957 7.151999 ACAGACATTTCAACAGTTTTGTGTA 57.848 32.000 0.00 0.00 37.67 2.90
2021 2090 5.234466 AGTAAAAGGTGAGCATCTGAACT 57.766 39.130 0.00 0.00 34.92 3.01
2022 2091 7.550906 AGATTAGTAAAAGGTGAGCATCTGAAC 59.449 37.037 0.00 0.00 34.92 3.18
2031 2100 7.389053 ACTGCAAGAAGATTAGTAAAAGGTGAG 59.611 37.037 0.00 0.00 37.43 3.51
2066 2135 8.449085 AATAACTGTATCGTACATTATCTGCG 57.551 34.615 0.00 0.00 38.15 5.18
2103 2172 8.935844 CACTGTTTCATTACTGCTATTACAAGA 58.064 33.333 0.00 0.00 0.00 3.02
2110 2179 5.804639 TCACCACTGTTTCATTACTGCTAT 58.195 37.500 0.00 0.00 0.00 2.97
2111 2180 5.222079 TCACCACTGTTTCATTACTGCTA 57.778 39.130 0.00 0.00 0.00 3.49
2112 2181 4.085357 TCACCACTGTTTCATTACTGCT 57.915 40.909 0.00 0.00 0.00 4.24
2127 2196 7.039993 ACTCATTAATTTGTTACCCTTCACCAC 60.040 37.037 0.00 0.00 0.00 4.16
2138 2207 6.932400 AGACGGTGACACTCATTAATTTGTTA 59.068 34.615 5.39 0.00 0.00 2.41
2154 2223 8.197988 AGTTATATTTGATGAAAGACGGTGAC 57.802 34.615 0.00 0.00 0.00 3.67
2158 2227 9.751542 AGTAGAGTTATATTTGATGAAAGACGG 57.248 33.333 0.00 0.00 0.00 4.79
2252 2324 8.800370 TGACTAGTTGGCATTTGAATATGTAA 57.200 30.769 0.00 0.00 0.00 2.41
2326 2401 9.661563 CAGTAAAACAGTCTTACCCATGTTATA 57.338 33.333 0.00 0.00 34.92 0.98
2327 2402 7.120726 GCAGTAAAACAGTCTTACCCATGTTAT 59.879 37.037 0.00 0.00 34.92 1.89
2366 2441 3.490419 GCTGCCCTCAAATGCTAATTCAG 60.490 47.826 0.00 0.00 0.00 3.02
2403 2478 0.684805 CAAGACCTACGAGGGAGCCT 60.685 60.000 5.54 0.00 40.58 4.58
2404 2479 0.971447 ACAAGACCTACGAGGGAGCC 60.971 60.000 5.54 0.00 40.58 4.70
2503 2578 1.229658 CCCAGAGAAGTGGAGGGGT 60.230 63.158 0.00 0.00 40.44 4.95
2608 2683 7.807977 ATTCATACATATGTTGACTTGGTCC 57.192 36.000 14.77 0.00 35.26 4.46
2632 2707 5.048083 GGCATGTTTCTTGTTTCACCAGATA 60.048 40.000 0.00 0.00 0.00 1.98
2667 2742 5.757850 TTTTGTTTTTGTTGTTGCAACCT 57.242 30.435 26.14 0.00 0.00 3.50
2668 2743 5.743872 TGTTTTTGTTTTTGTTGTTGCAACC 59.256 32.000 26.14 12.64 0.00 3.77
2672 2747 5.164109 GGCATGTTTTTGTTTTTGTTGTTGC 60.164 36.000 0.00 0.00 0.00 4.17
2673 2748 5.916883 TGGCATGTTTTTGTTTTTGTTGTTG 59.083 32.000 0.00 0.00 0.00 3.33
2678 2753 6.566197 TTCTTGGCATGTTTTTGTTTTTGT 57.434 29.167 0.00 0.00 0.00 2.83
2679 2754 7.083230 ACTTTCTTGGCATGTTTTTGTTTTTG 58.917 30.769 0.00 0.00 0.00 2.44
2696 2773 2.225019 AGCTGTGCGATCAACTTTCTTG 59.775 45.455 0.00 0.00 0.00 3.02
2713 2790 4.647654 CAGTTTTGCAGCCAGCTG 57.352 55.556 15.34 15.34 45.94 4.24
2740 2817 6.017109 AGTGGTGTAATGCTTTCAAGTTGTAG 60.017 38.462 2.11 3.35 0.00 2.74
2749 2826 5.106515 GGAGAAGAAGTGGTGTAATGCTTTC 60.107 44.000 0.00 0.00 0.00 2.62
2768 2845 4.706476 CCACCAAAATGCTAATCTGGAGAA 59.294 41.667 0.00 0.00 0.00 2.87
2770 2847 4.019174 ACCACCAAAATGCTAATCTGGAG 58.981 43.478 0.00 0.00 0.00 3.86
2775 2852 6.918022 GCATAGTAACCACCAAAATGCTAATC 59.082 38.462 0.00 0.00 0.00 1.75
2805 2883 4.955811 TCTTTGGACAGTGTGAGTACAT 57.044 40.909 0.00 0.00 39.39 2.29
2832 2910 2.496070 GGTAAGAAATGTGGCCCCTTTC 59.504 50.000 0.00 6.98 0.00 2.62
2833 2911 2.111792 AGGTAAGAAATGTGGCCCCTTT 59.888 45.455 0.00 0.00 0.00 3.11
2880 2992 1.476488 GAGGAGGAGCTGAAGACTGAC 59.524 57.143 0.00 0.00 0.00 3.51
2897 3009 7.440856 GGAAACTTCATCTATTTGAGCTAGAGG 59.559 40.741 0.00 0.00 0.00 3.69
2910 3022 4.574674 ATGGCAGTGGAAACTTCATCTA 57.425 40.909 0.00 0.00 0.00 1.98
2965 3077 9.154847 TGAAGTGTGATGTGATAATACTGAAAG 57.845 33.333 0.00 0.00 42.29 2.62
2996 3108 9.237846 GCTTTATTTAATTATCAACTGCCTGAC 57.762 33.333 0.00 0.00 0.00 3.51
2997 3109 8.965819 TGCTTTATTTAATTATCAACTGCCTGA 58.034 29.630 0.00 0.00 0.00 3.86
3072 3184 7.307751 GCCGTTTGCATTAGCTATTCAATAGTA 60.308 37.037 6.29 0.00 42.74 1.82
3073 3185 6.513393 GCCGTTTGCATTAGCTATTCAATAGT 60.513 38.462 6.29 0.00 42.74 2.12
3074 3186 5.853282 GCCGTTTGCATTAGCTATTCAATAG 59.147 40.000 0.00 0.00 42.74 1.73
3094 3211 1.360192 GTTGCTGCTTTCTTGCCGT 59.640 52.632 0.00 0.00 0.00 5.68
3101 3218 0.529378 CCCTGATGGTTGCTGCTTTC 59.471 55.000 0.00 0.00 0.00 2.62
3112 3229 1.052124 TAAGTACCGGCCCCTGATGG 61.052 60.000 0.00 0.00 0.00 3.51
3117 3234 1.335882 GCTTCTAAGTACCGGCCCCT 61.336 60.000 0.00 0.00 0.00 4.79
3118 3235 1.145598 GCTTCTAAGTACCGGCCCC 59.854 63.158 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.