Multiple sequence alignment - TraesCS6B01G288400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G288400 chr6B 100.000 8114 0 0 1 8114 519396056 519404169 0.000000e+00 14984.0
1 TraesCS6B01G288400 chr6B 94.857 175 8 1 618 791 156930671 156930497 1.040000e-68 272.0
2 TraesCS6B01G288400 chr6B 94.681 94 4 1 1539 1632 472612057 472612149 2.360000e-30 145.0
3 TraesCS6B01G288400 chr6B 95.506 89 4 0 1542 1630 359864634 359864722 8.490000e-30 143.0
4 TraesCS6B01G288400 chr6B 92.857 56 0 3 3487 3539 80083497 80083551 2.430000e-10 78.7
5 TraesCS6B01G288400 chr6B 89.130 46 3 2 3553 3598 114517959 114517916 1.000000e-03 56.5
6 TraesCS6B01G288400 chr6D 95.995 3645 91 8 3628 7263 344172661 344176259 0.000000e+00 5871.0
7 TraesCS6B01G288400 chr6D 93.199 2779 114 35 788 3529 344169815 344172555 0.000000e+00 4015.0
8 TraesCS6B01G288400 chr6D 94.862 759 20 12 7366 8114 344176267 344177016 0.000000e+00 1168.0
9 TraesCS6B01G288400 chr6D 95.105 429 13 5 43 471 344157897 344158317 0.000000e+00 669.0
10 TraesCS6B01G288400 chr6D 94.382 178 8 2 615 791 389700529 389700705 1.040000e-68 272.0
11 TraesCS6B01G288400 chr6D 89.286 168 4 3 462 629 344169665 344169818 1.790000e-46 198.0
12 TraesCS6B01G288400 chr6D 95.522 67 3 0 3565 3631 344172559 344172625 3.100000e-19 108.0
13 TraesCS6B01G288400 chr6D 100.000 41 0 0 3488 3528 306143548 306143588 8.730000e-10 76.8
14 TraesCS6B01G288400 chr6D 95.745 47 2 0 3487 3533 344172601 344172555 8.730000e-10 76.8
15 TraesCS6B01G288400 chr6D 95.833 48 0 2 3487 3533 441898382 441898336 8.730000e-10 76.8
16 TraesCS6B01G288400 chr6D 94.118 51 2 1 3484 3533 473415739 473415689 8.730000e-10 76.8
17 TraesCS6B01G288400 chr6D 94.000 50 2 1 3487 3535 9669751 9669800 3.140000e-09 75.0
18 TraesCS6B01G288400 chr6D 94.000 50 2 1 3487 3535 298384567 298384616 3.140000e-09 75.0
19 TraesCS6B01G288400 chr6D 91.667 48 3 1 3445 3492 402342344 402342298 1.890000e-06 65.8
20 TraesCS6B01G288400 chr6A 96.636 2170 63 2 3628 5787 484563413 484565582 0.000000e+00 3594.0
21 TraesCS6B01G288400 chr6A 94.083 1859 70 19 1625 3450 484561433 484563284 0.000000e+00 2787.0
22 TraesCS6B01G288400 chr6A 94.641 1157 53 5 5789 6943 484565646 484566795 0.000000e+00 1784.0
23 TraesCS6B01G288400 chr6A 91.598 1095 40 15 7051 8114 484566953 484568026 0.000000e+00 1465.0
24 TraesCS6B01G288400 chr6A 90.692 795 36 16 788 1545 484560643 484561436 0.000000e+00 1024.0
25 TraesCS6B01G288400 chr6A 89.278 457 24 10 195 629 484560193 484560646 4.280000e-152 549.0
26 TraesCS6B01G288400 chr6A 92.523 214 14 1 1 212 484559467 484559680 1.020000e-78 305.0
27 TraesCS6B01G288400 chr6A 91.071 56 3 2 3487 3541 570471247 570471301 3.140000e-09 75.0
28 TraesCS6B01G288400 chr6A 90.909 55 3 1 3487 3539 224611072 224611018 1.130000e-08 73.1
29 TraesCS6B01G288400 chr5B 91.150 1322 87 18 2097 3399 27378141 27379451 0.000000e+00 1766.0
30 TraesCS6B01G288400 chr5B 91.219 1321 83 16 2103 3400 27403938 27405248 0.000000e+00 1766.0
31 TraesCS6B01G288400 chr5B 93.506 154 5 2 6752 6902 665744468 665744619 2.950000e-54 224.0
32 TraesCS6B01G288400 chr3B 92.982 627 32 7 2785 3400 608259197 608259822 0.000000e+00 904.0
33 TraesCS6B01G288400 chr3B 94.286 35 2 0 3466 3500 472398595 472398629 4.000000e-03 54.7
34 TraesCS6B01G288400 chr7D 92.663 627 33 8 2785 3400 232339081 232339705 0.000000e+00 891.0
35 TraesCS6B01G288400 chrUn 100.000 417 0 0 3661 4077 477117611 477117195 0.000000e+00 771.0
36 TraesCS6B01G288400 chrUn 95.833 48 0 2 3487 3533 24170485 24170531 8.730000e-10 76.8
37 TraesCS6B01G288400 chrUn 95.745 47 0 2 3487 3532 257220258 257220213 3.140000e-09 75.0
38 TraesCS6B01G288400 chrUn 95.745 47 0 2 3487 3532 257230709 257230664 3.140000e-09 75.0
39 TraesCS6B01G288400 chr3A 98.171 164 3 0 628 791 411083902 411083739 3.710000e-73 287.0
40 TraesCS6B01G288400 chr3A 96.364 165 5 1 628 791 70479209 70479045 3.730000e-68 270.0
41 TraesCS6B01G288400 chr4B 96.450 169 4 1 623 791 82416862 82416696 2.230000e-70 278.0
42 TraesCS6B01G288400 chr4B 90.798 163 12 1 6749 6908 106227405 106227567 1.770000e-51 215.0
43 TraesCS6B01G288400 chr4B 94.595 37 1 1 3554 3590 492761098 492761133 1.000000e-03 56.5
44 TraesCS6B01G288400 chr4D 95.349 172 7 1 628 798 477898795 477898966 1.040000e-68 272.0
45 TraesCS6B01G288400 chr4D 93.514 185 7 4 612 795 403412897 403413077 3.730000e-68 270.0
46 TraesCS6B01G288400 chr4D 92.727 165 7 3 6750 6909 74079347 74079511 4.900000e-57 233.0
47 TraesCS6B01G288400 chr4D 96.629 89 3 0 1542 1630 363923926 363924014 1.820000e-31 148.0
48 TraesCS6B01G288400 chr4D 93.750 96 5 1 1533 1627 18692607 18692702 8.490000e-30 143.0
49 TraesCS6B01G288400 chr4D 90.909 55 2 2 3487 3538 20437789 20437843 4.060000e-08 71.3
50 TraesCS6B01G288400 chr4D 89.286 56 2 3 3487 3539 35624794 35624740 5.260000e-07 67.6
51 TraesCS6B01G288400 chr2A 94.798 173 8 1 627 798 746756989 746757161 1.340000e-67 268.0
52 TraesCS6B01G288400 chr2A 96.078 51 0 2 3487 3536 716168842 716168793 1.880000e-11 82.4
53 TraesCS6B01G288400 chr2A 95.918 49 0 2 3486 3533 196322935 196322982 2.430000e-10 78.7
54 TraesCS6B01G288400 chr2A 95.918 49 0 2 3486 3533 196345031 196345078 2.430000e-10 78.7
55 TraesCS6B01G288400 chr2A 95.918 49 0 2 3486 3533 196355318 196355365 2.430000e-10 78.7
56 TraesCS6B01G288400 chr2A 95.918 49 0 2 3486 3533 196359580 196359627 2.430000e-10 78.7
57 TraesCS6B01G288400 chr2A 86.538 52 7 0 3449 3500 71628253 71628304 3.160000e-04 58.4
58 TraesCS6B01G288400 chr4A 93.333 180 11 1 622 800 620939872 620940051 1.740000e-66 265.0
59 TraesCS6B01G288400 chr4A 92.079 101 8 0 1543 1643 712603262 712603162 8.490000e-30 143.0
60 TraesCS6B01G288400 chr4A 94.118 51 1 2 3487 3536 2776847 2776896 8.730000e-10 76.8
61 TraesCS6B01G288400 chr4A 100.000 28 0 0 3563 3590 56716268 56716295 1.500000e-02 52.8
62 TraesCS6B01G288400 chr5D 94.156 154 4 2 6752 6902 528717277 528717428 6.330000e-56 230.0
63 TraesCS6B01G288400 chr5D 94.231 52 1 2 3483 3533 351004124 351004174 2.430000e-10 78.7
64 TraesCS6B01G288400 chr5D 95.745 47 2 0 3487 3533 272146028 272145982 8.730000e-10 76.8
65 TraesCS6B01G288400 chr5D 95.833 48 0 2 3487 3533 551542104 551542058 8.730000e-10 76.8
66 TraesCS6B01G288400 chr5A 94.156 154 4 2 6752 6902 656872284 656872435 6.330000e-56 230.0
67 TraesCS6B01G288400 chr5A 94.118 51 1 2 3487 3536 307710893 307710844 8.730000e-10 76.8
68 TraesCS6B01G288400 chr2D 93.464 153 7 1 6753 6902 79056167 79056319 2.950000e-54 224.0
69 TraesCS6B01G288400 chr7B 91.358 162 9 3 6753 6911 44939554 44939713 4.930000e-52 217.0
70 TraesCS6B01G288400 chr7B 92.308 52 4 0 3482 3533 332818933 332818882 3.140000e-09 75.0
71 TraesCS6B01G288400 chr1A 93.684 95 6 0 1543 1637 533694061 533693967 8.490000e-30 143.0
72 TraesCS6B01G288400 chr1A 95.833 48 0 2 3487 3533 426017696 426017742 8.730000e-10 76.8
73 TraesCS6B01G288400 chr1A 87.273 55 6 1 3554 3608 29161421 29161474 2.450000e-05 62.1
74 TraesCS6B01G288400 chr1A 96.875 32 1 0 3469 3500 321668071 321668040 4.000000e-03 54.7
75 TraesCS6B01G288400 chr3D 91.919 99 7 1 1531 1629 436676995 436676898 3.950000e-28 137.0
76 TraesCS6B01G288400 chr2B 91.089 101 6 3 1543 1641 70878898 70878997 5.110000e-27 134.0
77 TraesCS6B01G288400 chr2B 92.500 40 2 1 3550 3588 671209438 671209399 1.000000e-03 56.5
78 TraesCS6B01G288400 chr1D 94.000 50 2 1 3487 3535 28358597 28358646 3.140000e-09 75.0
79 TraesCS6B01G288400 chr1D 94.000 50 2 1 3487 3535 49707614 49707663 3.140000e-09 75.0
80 TraesCS6B01G288400 chr1D 78.333 120 19 4 3486 3605 22785297 22785185 4.060000e-08 71.3
81 TraesCS6B01G288400 chr1D 93.750 48 1 2 3487 3533 279946253 279946299 4.060000e-08 71.3
82 TraesCS6B01G288400 chr1D 93.617 47 3 0 3487 3533 348120860 348120814 4.060000e-08 71.3
83 TraesCS6B01G288400 chr1D 95.455 44 2 0 3486 3529 358222550 358222593 4.060000e-08 71.3
84 TraesCS6B01G288400 chr1D 95.455 44 0 2 3487 3529 19257148 19257190 1.460000e-07 69.4
85 TraesCS6B01G288400 chr1D 95.349 43 2 0 3487 3529 200826069 200826027 1.460000e-07 69.4
86 TraesCS6B01G288400 chr1D 95.349 43 2 0 3487 3529 339102034 339102076 1.460000e-07 69.4
87 TraesCS6B01G288400 chr1D 90.385 52 5 0 3487 3538 364725453 364725402 1.460000e-07 69.4
88 TraesCS6B01G288400 chr1D 88.679 53 5 1 3477 3529 474446552 474446501 6.800000e-06 63.9
89 TraesCS6B01G288400 chr1D 94.595 37 2 0 3563 3599 394488506 394488542 3.160000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G288400 chr6B 519396056 519404169 8113 False 14984 14984 100.000000 1 8114 1 chr6B.!!$F4 8113
1 TraesCS6B01G288400 chr6D 344169665 344177016 7351 False 2272 5871 93.772800 462 8114 5 chr6D.!!$F6 7652
2 TraesCS6B01G288400 chr6A 484559467 484568026 8559 False 1644 3594 92.778714 1 8114 7 chr6A.!!$F2 8113
3 TraesCS6B01G288400 chr5B 27378141 27379451 1310 False 1766 1766 91.150000 2097 3399 1 chr5B.!!$F1 1302
4 TraesCS6B01G288400 chr5B 27403938 27405248 1310 False 1766 1766 91.219000 2103 3400 1 chr5B.!!$F2 1297
5 TraesCS6B01G288400 chr3B 608259197 608259822 625 False 904 904 92.982000 2785 3400 1 chr3B.!!$F2 615
6 TraesCS6B01G288400 chr7D 232339081 232339705 624 False 891 891 92.663000 2785 3400 1 chr7D.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.179234 TGCGGACGAGAGAGAGAGAT 59.821 55.000 0.00 0.00 0.00 2.75 F
1038 1607 0.039764 TTCGCTTCCTCTCTCCCTCA 59.960 55.000 0.00 0.00 0.00 3.86 F
1498 2092 0.040067 CTCGAAACAGCTTGGGTTGC 60.040 55.000 0.00 0.00 0.00 4.17 F
2320 2926 0.460987 CCCGTCTTGTCATGCTCCTC 60.461 60.000 0.00 0.00 0.00 3.71 F
3486 4123 1.044790 GGTAATTCCGGACGGAGGGA 61.045 60.000 13.64 0.00 46.06 4.20 F
5268 5953 2.356695 GAGCAAAAGGTACCGTGTTTGT 59.643 45.455 26.11 18.25 34.24 2.83 F
6283 7031 0.179702 GAGCAGCATCAGGGATCACA 59.820 55.000 0.00 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 2327 0.108186 CGCACTTGAGTAGATGGGCA 60.108 55.000 0.00 0.00 0.00 5.36 R
2320 2926 0.602638 TCAGCAGTAACAAGGCGTGG 60.603 55.000 5.22 0.00 0.00 4.94 R
3467 4104 1.044790 TCCCTCCGTCCGGAATTACC 61.045 60.000 5.23 0.00 44.66 2.85 R
4077 4762 2.189594 CATGTTTCTCTCCACAGGCA 57.810 50.000 0.00 0.00 0.00 4.75 R
5324 6009 1.000731 CCTCCTTCTGGATCGCTGATC 59.999 57.143 9.24 9.24 42.29 2.92 R
6635 7385 0.168128 CGTTCGCTTCCCACCATTTC 59.832 55.000 0.00 0.00 0.00 2.17 R
7240 8047 0.238553 GAGCTTCAAAACCAGCCGTC 59.761 55.000 0.00 0.00 36.62 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.171940 GTTCGCTCGTTGCAGCAG 59.828 61.111 0.24 0.00 43.06 4.24
78 79 1.079819 CGTCCAAGGCGACATCACT 60.080 57.895 0.00 0.00 32.74 3.41
80 81 1.078759 GTCCAAGGCGACATCACTCG 61.079 60.000 0.00 0.00 36.70 4.18
82 83 0.670546 CCAAGGCGACATCACTCGTT 60.671 55.000 0.00 0.00 35.99 3.85
100 101 0.805614 TTTGCGGACGAGAGAGAGAG 59.194 55.000 0.00 0.00 0.00 3.20
102 103 0.179234 TGCGGACGAGAGAGAGAGAT 59.821 55.000 0.00 0.00 0.00 2.75
103 104 0.586319 GCGGACGAGAGAGAGAGATG 59.414 60.000 0.00 0.00 0.00 2.90
104 105 1.225855 CGGACGAGAGAGAGAGATGG 58.774 60.000 0.00 0.00 0.00 3.51
167 170 4.436998 GCCTACGCTGCGTGGTCT 62.437 66.667 35.11 12.61 41.39 3.85
181 184 0.764271 TGGTCTTCTCCACATGTGCA 59.236 50.000 20.81 4.45 31.96 4.57
204 207 0.248498 ACACGCACGATCATCCTACG 60.248 55.000 0.00 0.00 0.00 3.51
206 209 1.008424 CGCACGATCATCCTACGCT 60.008 57.895 0.00 0.00 0.00 5.07
214 747 0.760567 TCATCCTACGCTGGGCTGAT 60.761 55.000 0.00 0.00 0.00 2.90
219 752 0.602106 CTACGCTGGGCTGATGATGG 60.602 60.000 0.00 0.00 0.00 3.51
229 762 0.302890 CTGATGATGGCTTCGCGTTC 59.697 55.000 5.77 0.00 0.00 3.95
232 765 4.223964 GATGGCTTCGCGTTCGCC 62.224 66.667 22.51 22.51 44.02 5.54
249 782 2.370445 CCGGGATGCTGAAGAGGGT 61.370 63.158 0.00 0.00 0.00 4.34
250 783 1.153289 CGGGATGCTGAAGAGGGTG 60.153 63.158 0.00 0.00 0.00 4.61
251 784 1.617018 CGGGATGCTGAAGAGGGTGA 61.617 60.000 0.00 0.00 0.00 4.02
252 785 0.842635 GGGATGCTGAAGAGGGTGAT 59.157 55.000 0.00 0.00 0.00 3.06
253 786 1.476471 GGGATGCTGAAGAGGGTGATG 60.476 57.143 0.00 0.00 0.00 3.07
254 787 1.487976 GGATGCTGAAGAGGGTGATGA 59.512 52.381 0.00 0.00 0.00 2.92
255 788 2.485124 GGATGCTGAAGAGGGTGATGAG 60.485 54.545 0.00 0.00 0.00 2.90
262 797 2.770164 AGAGGGTGATGAGAAAACGG 57.230 50.000 0.00 0.00 0.00 4.44
271 806 4.455877 GTGATGAGAAAACGGAAATCAGGT 59.544 41.667 0.00 0.00 0.00 4.00
280 815 2.094675 CGGAAATCAGGTGCCAGATTT 58.905 47.619 17.64 17.64 42.23 2.17
283 818 3.259123 GGAAATCAGGTGCCAGATTTTGT 59.741 43.478 18.34 2.06 40.54 2.83
297 832 2.937469 TTTTGTGCTAATCCATGGCG 57.063 45.000 6.96 0.00 0.00 5.69
400 935 8.827832 TTGACAGGAAATGAATCCAAGATTAT 57.172 30.769 0.00 0.00 42.27 1.28
408 943 8.529424 AAATGAATCCAAGATTATGAAGCAGA 57.471 30.769 0.00 0.00 0.00 4.26
409 944 7.747155 ATGAATCCAAGATTATGAAGCAGAG 57.253 36.000 0.00 0.00 0.00 3.35
410 945 6.060136 TGAATCCAAGATTATGAAGCAGAGG 58.940 40.000 0.00 0.00 0.00 3.69
411 946 3.813443 TCCAAGATTATGAAGCAGAGGC 58.187 45.455 0.00 0.00 41.61 4.70
503 1046 0.603975 AAACAGCCGCTTCCTCTCAC 60.604 55.000 0.00 0.00 0.00 3.51
518 1061 1.988846 TCTCACAGTCTCCCTCTCTCA 59.011 52.381 0.00 0.00 0.00 3.27
587 1138 1.532868 GCCGCATGCTAAATGGAGTAG 59.467 52.381 17.13 0.00 36.87 2.57
629 1183 8.269424 CAGATTCGACATTGTAGCAATAAGTAC 58.731 37.037 0.00 0.00 0.00 2.73
630 1184 8.198109 AGATTCGACATTGTAGCAATAAGTACT 58.802 33.333 0.00 0.00 0.00 2.73
632 1186 7.751047 TCGACATTGTAGCAATAAGTACTTC 57.249 36.000 12.39 0.00 0.00 3.01
633 1187 6.755141 TCGACATTGTAGCAATAAGTACTTCC 59.245 38.462 12.39 0.00 0.00 3.46
634 1188 6.757010 CGACATTGTAGCAATAAGTACTTCCT 59.243 38.462 12.39 7.24 0.00 3.36
635 1189 7.043325 CGACATTGTAGCAATAAGTACTTCCTC 60.043 40.741 12.39 0.38 0.00 3.71
636 1190 7.048512 ACATTGTAGCAATAAGTACTTCCTCC 58.951 38.462 12.39 0.00 0.00 4.30
637 1191 5.258456 TGTAGCAATAAGTACTTCCTCCG 57.742 43.478 12.39 0.00 0.00 4.63
638 1192 4.708421 TGTAGCAATAAGTACTTCCTCCGT 59.292 41.667 12.39 0.00 0.00 4.69
639 1193 4.820894 AGCAATAAGTACTTCCTCCGTT 57.179 40.909 12.39 0.00 0.00 4.44
640 1194 4.756502 AGCAATAAGTACTTCCTCCGTTC 58.243 43.478 12.39 0.00 0.00 3.95
641 1195 3.869832 GCAATAAGTACTTCCTCCGTTCC 59.130 47.826 12.39 0.00 0.00 3.62
642 1196 4.382793 GCAATAAGTACTTCCTCCGTTCCT 60.383 45.833 12.39 0.00 0.00 3.36
643 1197 5.163478 GCAATAAGTACTTCCTCCGTTCCTA 60.163 44.000 12.39 0.00 0.00 2.94
644 1198 6.628844 GCAATAAGTACTTCCTCCGTTCCTAA 60.629 42.308 12.39 0.00 0.00 2.69
645 1199 7.325694 CAATAAGTACTTCCTCCGTTCCTAAA 58.674 38.462 12.39 0.00 0.00 1.85
646 1200 7.672122 ATAAGTACTTCCTCCGTTCCTAAAT 57.328 36.000 12.39 0.00 0.00 1.40
647 1201 8.773033 ATAAGTACTTCCTCCGTTCCTAAATA 57.227 34.615 12.39 0.00 0.00 1.40
648 1202 7.672122 AAGTACTTCCTCCGTTCCTAAATAT 57.328 36.000 1.12 0.00 0.00 1.28
649 1203 7.672122 AGTACTTCCTCCGTTCCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
650 1204 8.087303 AGTACTTCCTCCGTTCCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
651 1205 7.985752 AGTACTTCCTCCGTTCCTAAATATTTG 59.014 37.037 11.05 1.40 0.00 2.32
652 1206 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
653 1207 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
654 1208 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
655 1209 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
656 1210 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
657 1211 7.886446 TCCTCCGTTCCTAAATATTTGTCTTTT 59.114 33.333 11.05 0.00 0.00 2.27
658 1212 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
689 1243 7.884816 TTTAACAAGTGACTACATACAGAGC 57.115 36.000 0.00 0.00 0.00 4.09
690 1244 5.468540 AACAAGTGACTACATACAGAGCA 57.531 39.130 0.00 0.00 0.00 4.26
691 1245 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
692 1246 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
693 1247 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
694 1248 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
695 1249 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
696 1250 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
697 1251 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
698 1252 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
699 1253 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
700 1254 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
701 1255 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
702 1256 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
703 1257 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
704 1258 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
705 1259 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
706 1260 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
707 1261 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
708 1262 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
721 1275 8.764524 AGTGAATCTACACTCTAAAATGTGTC 57.235 34.615 1.91 0.00 46.36 3.67
722 1276 8.589338 AGTGAATCTACACTCTAAAATGTGTCT 58.411 33.333 1.91 0.00 46.36 3.41
723 1277 9.856488 GTGAATCTACACTCTAAAATGTGTCTA 57.144 33.333 1.91 0.00 44.94 2.59
739 1293 9.639601 AAATGTGTCTATATACATCCGTATGTG 57.360 33.333 3.56 0.00 45.99 3.21
740 1294 7.153217 TGTGTCTATATACATCCGTATGTGG 57.847 40.000 3.56 0.00 45.99 4.17
741 1295 6.717997 TGTGTCTATATACATCCGTATGTGGT 59.282 38.462 3.56 0.00 45.99 4.16
742 1296 7.884354 TGTGTCTATATACATCCGTATGTGGTA 59.116 37.037 3.56 0.00 45.99 3.25
743 1297 8.396390 GTGTCTATATACATCCGTATGTGGTAG 58.604 40.741 3.56 3.93 45.99 3.18
744 1298 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
745 1299 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
746 1300 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
747 1301 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
748 1302 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
749 1303 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
750 1304 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
751 1305 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
752 1306 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
753 1307 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
754 1308 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
755 1309 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
756 1310 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
757 1311 6.238374 CGTATGTGGTAGTCCATTTGAAATCC 60.238 42.308 0.00 0.00 46.20 3.01
758 1312 5.255397 TGTGGTAGTCCATTTGAAATCCT 57.745 39.130 0.00 0.00 46.20 3.24
759 1313 6.381498 TGTGGTAGTCCATTTGAAATCCTA 57.619 37.500 0.00 0.00 46.20 2.94
760 1314 6.785076 TGTGGTAGTCCATTTGAAATCCTAA 58.215 36.000 0.00 0.00 46.20 2.69
761 1315 7.235079 TGTGGTAGTCCATTTGAAATCCTAAA 58.765 34.615 0.00 0.00 46.20 1.85
762 1316 7.726291 TGTGGTAGTCCATTTGAAATCCTAAAA 59.274 33.333 0.00 0.00 46.20 1.52
763 1317 8.581578 GTGGTAGTCCATTTGAAATCCTAAAAA 58.418 33.333 0.00 0.00 46.20 1.94
764 1318 8.802267 TGGTAGTCCATTTGAAATCCTAAAAAG 58.198 33.333 0.00 0.00 39.03 2.27
765 1319 9.020731 GGTAGTCCATTTGAAATCCTAAAAAGA 57.979 33.333 0.00 0.00 0.00 2.52
766 1320 9.841880 GTAGTCCATTTGAAATCCTAAAAAGAC 57.158 33.333 0.00 0.00 0.00 3.01
767 1321 8.477419 AGTCCATTTGAAATCCTAAAAAGACA 57.523 30.769 0.00 0.00 30.54 3.41
768 1322 8.923270 AGTCCATTTGAAATCCTAAAAAGACAA 58.077 29.630 0.00 0.00 30.54 3.18
769 1323 9.541143 GTCCATTTGAAATCCTAAAAAGACAAA 57.459 29.630 0.00 0.00 0.00 2.83
785 1339 9.908152 AAAAAGACAAATATTTAGGAACGGAAG 57.092 29.630 0.00 0.00 0.00 3.46
786 1340 7.625828 AAGACAAATATTTAGGAACGGAAGG 57.374 36.000 0.00 0.00 0.00 3.46
787 1341 6.954232 AGACAAATATTTAGGAACGGAAGGA 58.046 36.000 0.00 0.00 0.00 3.36
788 1342 7.048512 AGACAAATATTTAGGAACGGAAGGAG 58.951 38.462 0.00 0.00 0.00 3.69
789 1343 6.718294 ACAAATATTTAGGAACGGAAGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
790 1344 7.854337 ACAAATATTTAGGAACGGAAGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
791 1345 7.985752 ACAAATATTTAGGAACGGAAGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
792 1346 6.667558 ATATTTAGGAACGGAAGGAGTAGG 57.332 41.667 0.00 0.00 0.00 3.18
793 1347 3.463048 TTAGGAACGGAAGGAGTAGGT 57.537 47.619 0.00 0.00 0.00 3.08
794 1348 2.322339 AGGAACGGAAGGAGTAGGTT 57.678 50.000 0.00 0.00 0.00 3.50
1030 1599 1.552792 CCTTCTTCCTTCGCTTCCTCT 59.447 52.381 0.00 0.00 0.00 3.69
1038 1607 0.039764 TTCGCTTCCTCTCTCCCTCA 59.960 55.000 0.00 0.00 0.00 3.86
1065 1642 0.987294 CTGCCCCCTCTTCTTTCTCA 59.013 55.000 0.00 0.00 0.00 3.27
1079 1656 4.130118 TCTTTCTCACTTGCTTTCTGTCC 58.870 43.478 0.00 0.00 0.00 4.02
1080 1657 3.845781 TTCTCACTTGCTTTCTGTCCT 57.154 42.857 0.00 0.00 0.00 3.85
1178 1764 3.496331 TCTTTTGCCCGATCTTTTTCCT 58.504 40.909 0.00 0.00 0.00 3.36
1244 1834 2.048503 GCCGAGCAGGTACGTTGT 60.049 61.111 0.00 0.00 43.70 3.32
1263 1854 3.013219 TGTAGCAAGCAACAAGTGTTCA 58.987 40.909 0.00 0.00 35.83 3.18
1273 1864 3.698029 ACAAGTGTTCACATCTTGCAC 57.302 42.857 16.00 0.00 37.92 4.57
1292 1883 3.181456 GCACCCTCTTCTGATTATCTGCT 60.181 47.826 0.00 0.00 0.00 4.24
1349 1940 1.480954 ACTCGTAATTCACCGCATCCT 59.519 47.619 0.00 0.00 0.00 3.24
1369 1960 4.278669 TCCTTGTTAGCATAGACGGATCTC 59.721 45.833 0.00 0.00 36.29 2.75
1383 1974 5.357032 AGACGGATCTCTTCTTCTTCTTCTC 59.643 44.000 0.00 0.00 0.00 2.87
1498 2092 0.040067 CTCGAAACAGCTTGGGTTGC 60.040 55.000 0.00 0.00 0.00 4.17
1601 2196 8.191534 ATCACTAAAGTAGTGGTCTAAACACT 57.808 34.615 13.91 2.82 46.78 3.55
1622 2217 6.096564 ACACTCTTATACTTCTTTACGGAGGG 59.903 42.308 0.00 0.00 0.00 4.30
1661 2256 1.460504 ATGCTGCAGAAGACACATGG 58.539 50.000 20.43 0.00 0.00 3.66
1732 2327 3.571401 CCATTGTTGCTCTCAAGAAAGGT 59.429 43.478 2.35 0.00 38.64 3.50
1867 2464 4.525411 AAACGTTGTTTCACTACCTTCG 57.475 40.909 0.00 0.00 0.00 3.79
1908 2505 8.893563 AAACCTGTATAATTCCCTCAAAATGA 57.106 30.769 0.00 0.00 0.00 2.57
1959 2559 1.005037 CTGAGGTGCGGTGCTACAA 60.005 57.895 0.00 0.00 0.00 2.41
1973 2573 4.082026 GGTGCTACAAATTTCTGATGGCTT 60.082 41.667 0.00 0.00 0.00 4.35
1998 2598 6.039270 TGACGTATGGGAAATTTGATCAATCC 59.961 38.462 15.49 15.49 0.00 3.01
1999 2599 5.890985 ACGTATGGGAAATTTGATCAATCCA 59.109 36.000 22.25 17.64 31.63 3.41
2021 2621 6.042143 CCAGTTAAACTCAACAGTGCAAAAT 58.958 36.000 0.00 0.00 31.06 1.82
2026 2626 9.848172 GTTAAACTCAACAGTGCAAAATATTTG 57.152 29.630 0.39 0.00 31.06 2.32
2044 2644 7.792374 ATATTTGTACACAATGCACTAGAGG 57.208 36.000 0.00 0.00 35.55 3.69
2304 2906 1.002430 CCATCAGTCCATATGGTCCCG 59.998 57.143 21.28 10.15 38.28 5.14
2309 2915 1.762957 AGTCCATATGGTCCCGTCTTG 59.237 52.381 21.28 0.00 36.34 3.02
2320 2926 0.460987 CCCGTCTTGTCATGCTCCTC 60.461 60.000 0.00 0.00 0.00 3.71
2545 3156 8.515414 GCCTATCAAAATATCCCAACATAACTC 58.485 37.037 0.00 0.00 0.00 3.01
2557 3168 5.106673 CCCAACATAACTCTTTCTTTCGGTC 60.107 44.000 0.00 0.00 0.00 4.79
2739 3352 6.946340 TCTTAGAATGTCTGTATTTGCAGGA 58.054 36.000 0.00 0.00 37.12 3.86
2806 3419 6.925610 TTGTCAGTCATATACAAGAATGGC 57.074 37.500 0.00 0.00 35.27 4.40
3299 3935 8.702163 AATTAATAACCAACATGTTAAGCAGC 57.298 30.769 11.53 0.00 34.59 5.25
3386 4023 5.934402 AGGTAACACCCAGACTAATGTAG 57.066 43.478 0.00 0.00 39.75 2.74
3408 4045 6.313519 AGTGTCAAGTGGGTAATGATACAT 57.686 37.500 5.02 0.00 37.57 2.29
3463 4100 2.094390 CCTCCGTACATCCGTTTGAGAA 60.094 50.000 0.00 0.00 0.00 2.87
3480 4117 3.181479 TGAGAATCAGGTAATTCCGGACG 60.181 47.826 1.83 0.00 42.56 4.79
3485 4122 1.047034 AGGTAATTCCGGACGGAGGG 61.047 60.000 13.64 0.00 46.06 4.30
3486 4123 1.044790 GGTAATTCCGGACGGAGGGA 61.045 60.000 13.64 0.00 46.06 4.20
3631 4268 5.921962 ATAAGCCGATACATCTGATAGCA 57.078 39.130 0.00 0.00 0.00 3.49
3636 4312 6.000219 AGCCGATACATCTGATAGCATTTTT 59.000 36.000 0.00 0.00 0.00 1.94
4220 4905 9.179909 GATTATCGAATCTCTTACCTCTATCCA 57.820 37.037 0.00 0.00 38.78 3.41
4239 4924 8.771286 TCTATCCATATGAAGGCTATTGCATTA 58.229 33.333 3.65 0.00 43.63 1.90
5043 5728 4.583871 AGTCCTTGGAAGATAAGCAAGTG 58.416 43.478 0.00 0.00 0.00 3.16
5055 5740 5.600484 AGATAAGCAAGTGGACAGTATAGCT 59.400 40.000 0.00 0.00 0.00 3.32
5091 5776 3.064271 TCACTCTTGCGGTTTGTTTACAC 59.936 43.478 0.00 0.00 0.00 2.90
5116 5801 4.376146 GTCTATCTCAGGCAAGGATCAAC 58.624 47.826 0.00 0.00 0.00 3.18
5268 5953 2.356695 GAGCAAAAGGTACCGTGTTTGT 59.643 45.455 26.11 18.25 34.24 2.83
5272 5957 4.023878 GCAAAAGGTACCGTGTTTGTGATA 60.024 41.667 26.11 0.00 34.24 2.15
5337 6022 1.202348 AGTTCACGATCAGCGATCCAG 60.202 52.381 11.29 6.02 44.57 3.86
5445 6130 0.528901 TGACAACGTCACAGGGTTCG 60.529 55.000 0.00 0.00 37.67 3.95
5471 6156 2.641815 AGAGAAATCAGGACTTGGCTGT 59.358 45.455 0.00 0.00 0.00 4.40
5472 6157 2.746362 GAGAAATCAGGACTTGGCTGTG 59.254 50.000 0.00 0.00 0.00 3.66
5583 6268 6.370442 CCATACCAAATAAACAGACAGTCGAA 59.630 38.462 0.00 0.00 0.00 3.71
5593 6278 4.612943 ACAGACAGTCGAAGTTTCTCTTC 58.387 43.478 0.00 0.00 46.39 2.87
5666 6351 6.372659 CCAGAAGCAGCTACTAATTTGAAAGA 59.627 38.462 0.00 0.00 0.00 2.52
5744 6429 8.082852 AGCACAGGTAATTCATAGAGTATAACG 58.917 37.037 0.00 0.00 0.00 3.18
5757 6442 5.390613 AGAGTATAACGTTGTTTGCAATGC 58.609 37.500 11.99 0.00 43.49 3.56
5977 6725 5.352643 TGATTATCATGAATGAAGCAGCG 57.647 39.130 0.00 0.00 40.69 5.18
6066 6814 5.182001 CAGTTCCCAACCTATTCAGAAACTG 59.818 44.000 0.00 0.00 0.00 3.16
6067 6815 4.993705 TCCCAACCTATTCAGAAACTGT 57.006 40.909 0.00 0.00 32.61 3.55
6068 6816 4.651778 TCCCAACCTATTCAGAAACTGTG 58.348 43.478 0.00 0.00 32.61 3.66
6069 6817 3.191371 CCCAACCTATTCAGAAACTGTGC 59.809 47.826 0.00 0.00 32.61 4.57
6079 6827 6.462073 TTCAGAAACTGTGCGAGTATTTAC 57.538 37.500 0.00 0.00 33.09 2.01
6149 6897 6.942005 TCAAAGAAGATTGATTTAGCTGGTGA 59.058 34.615 0.00 0.00 34.50 4.02
6177 6925 9.996554 CAATCATACAACTCCATAACTATACCA 57.003 33.333 0.00 0.00 0.00 3.25
6234 6982 1.348064 TACCAGACCCACCAGACAAG 58.652 55.000 0.00 0.00 0.00 3.16
6283 7031 0.179702 GAGCAGCATCAGGGATCACA 59.820 55.000 0.00 0.00 0.00 3.58
6358 7106 5.557576 AGGCTCAGTCATGCATAGAAATA 57.442 39.130 0.00 0.00 0.00 1.40
6486 7234 1.125093 TGACCGTTGTCACATCCCCT 61.125 55.000 0.00 0.00 46.40 4.79
6635 7385 0.401738 TTGGGGAGAAGGAAGCACAG 59.598 55.000 0.00 0.00 0.00 3.66
6725 7475 1.069765 AGCTGTGACAACCGACTGG 59.930 57.895 0.00 0.00 42.84 4.00
6761 7511 5.699143 CAATGGATTCCAAATACTCCCTCT 58.301 41.667 9.98 0.00 36.95 3.69
6773 7523 7.148239 CCAAATACTCCCTCTGTTCACAAATAC 60.148 40.741 0.00 0.00 0.00 1.89
6787 7537 9.114952 TGTTCACAAATACAAGATGTTCTAACA 57.885 29.630 0.00 0.00 44.06 2.41
6862 7612 6.971726 TTTCAGTCCGTATGTAGTCCATAT 57.028 37.500 0.00 0.00 38.29 1.78
6919 7669 7.838884 AGGGAGTAGTAAATACACTGAAAGAC 58.161 38.462 0.00 0.00 36.79 3.01
6962 7712 6.040166 ACAATAGATGGAATGATGGAAGCAAC 59.960 38.462 0.00 0.00 33.49 4.17
6970 7720 1.066502 TGATGGAAGCAACGGAATCGA 60.067 47.619 0.00 0.00 40.11 3.59
7047 7797 5.023551 GCACTTGCTTTGTACTAGTTGAG 57.976 43.478 0.00 0.00 38.21 3.02
7048 7798 4.611581 GCACTTGCTTTGTACTAGTTGAGC 60.612 45.833 0.00 6.61 38.21 4.26
7049 7799 3.741344 ACTTGCTTTGTACTAGTTGAGCG 59.259 43.478 0.00 0.00 33.03 5.03
7057 7857 1.765230 ACTAGTTGAGCGGGAGTAGG 58.235 55.000 0.00 0.00 0.00 3.18
7083 7883 5.734140 CCCCATGGTTAACCCCTATATGATA 59.266 44.000 21.97 0.00 34.29 2.15
7119 7919 5.338381 GGTCTGAGTTGAGTTGGATTATGGA 60.338 44.000 0.00 0.00 0.00 3.41
7152 7959 5.140454 TCCTCTTGAGTGATCCGATCATTA 58.860 41.667 14.15 1.85 42.04 1.90
7240 8047 0.458025 GAGAGCAAAGACGTACCGGG 60.458 60.000 6.32 0.00 0.00 5.73
7263 8070 0.540597 GCTGGTTTTGAAGCTCCCCT 60.541 55.000 0.00 0.00 0.00 4.79
7264 8071 1.251251 CTGGTTTTGAAGCTCCCCTG 58.749 55.000 0.00 0.00 0.00 4.45
7265 8072 0.555769 TGGTTTTGAAGCTCCCCTGT 59.444 50.000 0.00 0.00 0.00 4.00
7266 8073 1.777878 TGGTTTTGAAGCTCCCCTGTA 59.222 47.619 0.00 0.00 0.00 2.74
7267 8074 2.378547 TGGTTTTGAAGCTCCCCTGTAT 59.621 45.455 0.00 0.00 0.00 2.29
7268 8075 2.755103 GGTTTTGAAGCTCCCCTGTATG 59.245 50.000 0.00 0.00 0.00 2.39
7272 8079 0.179034 GAAGCTCCCCTGTATGGCTG 60.179 60.000 0.00 0.00 33.30 4.85
7273 8080 0.916358 AAGCTCCCCTGTATGGCTGT 60.916 55.000 0.00 0.00 33.30 4.40
7274 8081 0.031111 AGCTCCCCTGTATGGCTGTA 60.031 55.000 0.00 0.00 31.68 2.74
7334 8141 1.605712 GGTTCTCACTGAAGGTGTCCG 60.606 57.143 0.00 0.00 45.50 4.79
7365 8172 2.047179 GACCCGCCTCAGTTGTCC 60.047 66.667 0.00 0.00 0.00 4.02
7366 8173 2.526873 ACCCGCCTCAGTTGTCCT 60.527 61.111 0.00 0.00 0.00 3.85
7367 8174 1.229082 ACCCGCCTCAGTTGTCCTA 60.229 57.895 0.00 0.00 0.00 2.94
7377 8184 0.790993 AGTTGTCCTACTCCTCCCCA 59.209 55.000 0.00 0.00 0.00 4.96
7412 8221 3.228017 GGCTACGCCTCCCTCTCC 61.228 72.222 0.00 0.00 46.69 3.71
7413 8222 3.597728 GCTACGCCTCCCTCTCCG 61.598 72.222 0.00 0.00 0.00 4.63
7415 8224 2.124403 TACGCCTCCCTCTCCGTC 60.124 66.667 0.00 0.00 35.36 4.79
7607 8442 8.934825 TGCAATTTATCTAAAAACATTTCCTGC 58.065 29.630 0.00 0.00 0.00 4.85
7647 8482 5.013183 GCAGACCCAAGTCCAGGTATATTAT 59.987 44.000 0.00 0.00 44.72 1.28
7648 8483 6.467677 CAGACCCAAGTCCAGGTATATTATG 58.532 44.000 0.00 0.00 44.72 1.90
7649 8484 6.043243 CAGACCCAAGTCCAGGTATATTATGT 59.957 42.308 0.00 0.00 44.72 2.29
7705 8542 1.667724 GTTCGTCTTCTGCCCATCATG 59.332 52.381 0.00 0.00 0.00 3.07
7733 8570 4.185467 ACAGAATGCAGACTACAGAGTG 57.815 45.455 0.00 0.00 42.53 3.51
7874 8714 5.176590 GCAGACACTCTGTAGAGAACAAAAG 59.823 44.000 15.40 0.00 45.94 2.27
7888 8728 6.820656 AGAGAACAAAAGCATGGATACTACAG 59.179 38.462 0.00 0.00 37.61 2.74
7897 8740 5.367937 AGCATGGATACTACAGATTCCAACT 59.632 40.000 0.00 6.95 41.36 3.16
7898 8741 6.554982 AGCATGGATACTACAGATTCCAACTA 59.445 38.462 0.00 0.00 41.36 2.24
8001 8844 0.108945 GCAAAACCAGCAGGATGAGC 60.109 55.000 0.35 0.00 39.69 4.26
8084 8927 2.996621 ACATCTAAACTGTGAAGAGCGC 59.003 45.455 0.00 0.00 0.00 5.92
8096 8939 0.171455 AAGAGCGCGTCGAATCTTCT 59.829 50.000 8.43 0.00 32.08 2.85
8097 8940 0.248296 AGAGCGCGTCGAATCTTCTC 60.248 55.000 8.43 1.87 0.00 2.87
8098 8941 0.523546 GAGCGCGTCGAATCTTCTCA 60.524 55.000 8.43 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.298859 GATGTCGCCTTGGACGCTTT 61.299 55.000 0.00 0.00 39.83 3.51
80 81 0.522180 TCTCTCTCTCGTCCGCAAAC 59.478 55.000 0.00 0.00 0.00 2.93
82 83 0.036294 TCTCTCTCTCTCGTCCGCAA 60.036 55.000 0.00 0.00 0.00 4.85
181 184 1.141881 GATGATCGTGCGTGTCCCT 59.858 57.895 0.00 0.00 0.00 4.20
204 207 1.453762 GAAGCCATCATCAGCCCAGC 61.454 60.000 0.00 0.00 0.00 4.85
206 209 1.153107 CGAAGCCATCATCAGCCCA 60.153 57.895 0.00 0.00 0.00 5.36
229 762 2.587194 CTCTTCAGCATCCCGGCG 60.587 66.667 0.00 0.00 39.27 6.46
232 765 1.153289 CACCCTCTTCAGCATCCCG 60.153 63.158 0.00 0.00 0.00 5.14
249 782 4.455533 CACCTGATTTCCGTTTTCTCATCA 59.544 41.667 0.00 0.00 0.00 3.07
250 783 4.672801 GCACCTGATTTCCGTTTTCTCATC 60.673 45.833 0.00 0.00 0.00 2.92
251 784 3.191371 GCACCTGATTTCCGTTTTCTCAT 59.809 43.478 0.00 0.00 0.00 2.90
252 785 2.552315 GCACCTGATTTCCGTTTTCTCA 59.448 45.455 0.00 0.00 0.00 3.27
253 786 2.095212 GGCACCTGATTTCCGTTTTCTC 60.095 50.000 0.00 0.00 0.00 2.87
254 787 1.886542 GGCACCTGATTTCCGTTTTCT 59.113 47.619 0.00 0.00 0.00 2.52
255 788 1.611491 TGGCACCTGATTTCCGTTTTC 59.389 47.619 0.00 0.00 0.00 2.29
262 797 4.240096 CACAAAATCTGGCACCTGATTTC 58.760 43.478 25.56 0.00 46.44 2.17
271 806 3.429492 TGGATTAGCACAAAATCTGGCA 58.571 40.909 0.00 0.00 34.43 4.92
280 815 0.034574 ACCGCCATGGATTAGCACAA 60.035 50.000 18.40 0.00 42.00 3.33
283 818 1.152984 CCACCGCCATGGATTAGCA 60.153 57.895 18.40 0.00 43.02 3.49
297 832 4.760047 ATCTGACGGCGCACCACC 62.760 66.667 10.83 0.00 34.57 4.61
331 866 2.007608 CTACTACAAGGCCCGAAAAGC 58.992 52.381 0.00 0.00 0.00 3.51
386 921 6.060136 CCTCTGCTTCATAATCTTGGATTCA 58.940 40.000 0.00 0.00 0.00 2.57
388 923 4.826183 GCCTCTGCTTCATAATCTTGGATT 59.174 41.667 0.00 0.00 33.53 3.01
446 981 4.646492 ACATCTGTTGCTGTTTTCTCCTTT 59.354 37.500 0.00 0.00 0.00 3.11
503 1046 0.667993 GCGATGAGAGAGGGAGACTG 59.332 60.000 0.00 0.00 0.00 3.51
518 1061 2.108514 CCATCTGTTGGCGTGCGAT 61.109 57.895 0.00 0.00 39.09 4.58
575 1126 8.997621 TGCTTGTAGTTTACTACTCCATTTAG 57.002 34.615 18.06 7.61 46.74 1.85
587 1138 6.790825 GTCGAATCTGTTTGCTTGTAGTTTAC 59.209 38.462 0.00 0.00 0.00 2.01
629 1183 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
630 1184 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
632 1186 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
663 1217 8.936864 GCTCTGTATGTAGTCACTTGTTAAAAT 58.063 33.333 0.00 0.00 0.00 1.82
664 1218 7.929245 TGCTCTGTATGTAGTCACTTGTTAAAA 59.071 33.333 0.00 0.00 0.00 1.52
665 1219 7.438564 TGCTCTGTATGTAGTCACTTGTTAAA 58.561 34.615 0.00 0.00 0.00 1.52
666 1220 6.988522 TGCTCTGTATGTAGTCACTTGTTAA 58.011 36.000 0.00 0.00 0.00 2.01
667 1221 6.584185 TGCTCTGTATGTAGTCACTTGTTA 57.416 37.500 0.00 0.00 0.00 2.41
668 1222 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
669 1223 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
670 1224 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
671 1225 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
672 1226 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
673 1227 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
674 1228 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
675 1229 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
676 1230 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
677 1231 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
678 1232 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
679 1233 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
680 1234 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
681 1235 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
682 1236 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
683 1237 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
684 1238 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
685 1239 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
686 1240 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
713 1267 9.639601 CACATACGGATGTATATAGACACATTT 57.360 33.333 14.23 0.00 44.82 2.32
714 1268 8.251026 CCACATACGGATGTATATAGACACATT 58.749 37.037 14.23 0.00 44.82 2.71
715 1269 7.396339 ACCACATACGGATGTATATAGACACAT 59.604 37.037 14.23 0.00 44.82 3.21
716 1270 6.717997 ACCACATACGGATGTATATAGACACA 59.282 38.462 14.23 0.00 44.82 3.72
717 1271 7.154435 ACCACATACGGATGTATATAGACAC 57.846 40.000 14.23 0.00 44.82 3.67
718 1272 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
719 1273 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
720 1274 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
721 1275 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
722 1276 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
723 1277 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
724 1278 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
725 1279 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
726 1280 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
739 1293 9.020731 TCTTTTTAGGATTTCAAATGGACTACC 57.979 33.333 0.00 0.00 0.00 3.18
740 1294 9.841880 GTCTTTTTAGGATTTCAAATGGACTAC 57.158 33.333 0.00 0.00 0.00 2.73
741 1295 9.581289 TGTCTTTTTAGGATTTCAAATGGACTA 57.419 29.630 0.00 0.00 0.00 2.59
742 1296 8.477419 TGTCTTTTTAGGATTTCAAATGGACT 57.523 30.769 0.00 0.00 0.00 3.85
743 1297 9.541143 TTTGTCTTTTTAGGATTTCAAATGGAC 57.459 29.630 0.00 0.00 0.00 4.02
756 1310 9.783256 CCGTTCCTAAATATTTGTCTTTTTAGG 57.217 33.333 11.05 12.11 46.30 2.69
759 1313 9.908152 CTTCCGTTCCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
760 1314 8.520351 CCTTCCGTTCCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
761 1315 7.886446 TCCTTCCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
762 1316 7.399634 TCCTTCCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
763 1317 6.954232 TCCTTCCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
764 1318 6.822170 ACTCCTTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
765 1319 6.718294 ACTCCTTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
766 1320 7.441458 CCTACTCCTTCCGTTCCTAAATATTTG 59.559 40.741 11.05 1.40 0.00 2.32
767 1321 7.126879 ACCTACTCCTTCCGTTCCTAAATATTT 59.873 37.037 5.89 5.89 0.00 1.40
768 1322 6.614496 ACCTACTCCTTCCGTTCCTAAATATT 59.386 38.462 0.00 0.00 0.00 1.28
769 1323 6.141790 ACCTACTCCTTCCGTTCCTAAATAT 58.858 40.000 0.00 0.00 0.00 1.28
770 1324 5.522641 ACCTACTCCTTCCGTTCCTAAATA 58.477 41.667 0.00 0.00 0.00 1.40
771 1325 4.359996 ACCTACTCCTTCCGTTCCTAAAT 58.640 43.478 0.00 0.00 0.00 1.40
772 1326 3.782992 ACCTACTCCTTCCGTTCCTAAA 58.217 45.455 0.00 0.00 0.00 1.85
773 1327 3.463048 ACCTACTCCTTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
774 1328 3.094572 CAACCTACTCCTTCCGTTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
775 1329 1.900486 CAACCTACTCCTTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
776 1330 1.675116 GCAACCTACTCCTTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
777 1331 1.001633 TGCAACCTACTCCTTCCGTTC 59.998 52.381 0.00 0.00 0.00 3.95
778 1332 1.002087 CTGCAACCTACTCCTTCCGTT 59.998 52.381 0.00 0.00 0.00 4.44
779 1333 0.608640 CTGCAACCTACTCCTTCCGT 59.391 55.000 0.00 0.00 0.00 4.69
780 1334 0.108138 CCTGCAACCTACTCCTTCCG 60.108 60.000 0.00 0.00 0.00 4.30
781 1335 0.253327 CCCTGCAACCTACTCCTTCC 59.747 60.000 0.00 0.00 0.00 3.46
782 1336 0.393132 GCCCTGCAACCTACTCCTTC 60.393 60.000 0.00 0.00 0.00 3.46
783 1337 1.685820 GCCCTGCAACCTACTCCTT 59.314 57.895 0.00 0.00 0.00 3.36
784 1338 2.660064 CGCCCTGCAACCTACTCCT 61.660 63.158 0.00 0.00 0.00 3.69
785 1339 2.125106 CGCCCTGCAACCTACTCC 60.125 66.667 0.00 0.00 0.00 3.85
786 1340 1.741770 CACGCCCTGCAACCTACTC 60.742 63.158 0.00 0.00 0.00 2.59
787 1341 2.347490 CACGCCCTGCAACCTACT 59.653 61.111 0.00 0.00 0.00 2.57
788 1342 3.431725 GCACGCCCTGCAACCTAC 61.432 66.667 0.00 0.00 46.29 3.18
811 1365 8.542926 TCCTATTCATTCATTTCTCTCTGTTGA 58.457 33.333 0.00 0.00 0.00 3.18
835 1389 1.737793 CACGGTTGCAGAGGTAAATCC 59.262 52.381 0.00 0.00 0.00 3.01
1030 1599 1.548357 GCAGAGCTTGGTGAGGGAGA 61.548 60.000 0.00 0.00 0.00 3.71
1038 1607 3.334054 GAGGGGGCAGAGCTTGGT 61.334 66.667 0.00 0.00 0.00 3.67
1065 1642 2.576615 GTGGAAGGACAGAAAGCAAGT 58.423 47.619 0.00 0.00 0.00 3.16
1079 1656 1.982073 GCGAAAGATGGCGGTGGAAG 61.982 60.000 0.00 0.00 0.00 3.46
1080 1657 2.038269 GCGAAAGATGGCGGTGGAA 61.038 57.895 0.00 0.00 0.00 3.53
1218 1804 3.847602 CTGCTCGGCTCCTCTGGG 61.848 72.222 0.00 0.00 0.00 4.45
1244 1834 3.013219 TGTGAACACTTGTTGCTTGCTA 58.987 40.909 0.00 0.00 38.56 3.49
1263 1854 1.980765 TCAGAAGAGGGTGCAAGATGT 59.019 47.619 0.00 0.00 0.00 3.06
1273 1864 5.237048 GCTTAGCAGATAATCAGAAGAGGG 58.763 45.833 0.00 0.00 0.00 4.30
1292 1883 1.909302 CTTGAGAAGGTCTGGGGCTTA 59.091 52.381 0.00 0.00 0.00 3.09
1349 1940 5.594725 AGAAGAGATCCGTCTATGCTAACAA 59.405 40.000 0.00 0.00 29.53 2.83
1369 1960 3.007831 ACAGCAGGGAGAAGAAGAAGAAG 59.992 47.826 0.00 0.00 0.00 2.85
1383 1974 1.007387 GTCGCCAAAAACAGCAGGG 60.007 57.895 0.00 0.00 0.00 4.45
1498 2092 5.278660 CCAGGGAAGAAAACTGTGAAATGAG 60.279 44.000 0.00 0.00 0.00 2.90
1601 2196 6.430007 ACTCCCTCCGTAAAGAAGTATAAGA 58.570 40.000 0.00 0.00 0.00 2.10
1608 2203 4.946157 TGTAGTACTCCCTCCGTAAAGAAG 59.054 45.833 0.00 0.00 0.00 2.85
1616 2211 3.354467 ACTTCTTGTAGTACTCCCTCCG 58.646 50.000 0.00 0.00 0.00 4.63
1661 2256 2.223340 CCATGTAAGCGGAAACTCATGC 60.223 50.000 0.00 0.00 33.63 4.06
1732 2327 0.108186 CGCACTTGAGTAGATGGGCA 60.108 55.000 0.00 0.00 0.00 5.36
1839 2436 9.642327 AAGGTAGTGAAACAACGTTTAAATTTT 57.358 25.926 0.00 0.00 41.43 1.82
1843 2440 6.091986 ACGAAGGTAGTGAAACAACGTTTAAA 59.908 34.615 0.00 0.00 41.43 1.52
1847 2444 3.524541 ACGAAGGTAGTGAAACAACGTT 58.475 40.909 0.00 0.00 41.43 3.99
1853 2450 5.119743 GGTGATTGTACGAAGGTAGTGAAAC 59.880 44.000 0.00 0.00 0.00 2.78
1867 2464 5.548406 ACAGGTTTCTAGTGGTGATTGTAC 58.452 41.667 0.00 0.00 0.00 2.90
1959 2559 4.336433 CCATACGTCAAGCCATCAGAAATT 59.664 41.667 0.00 0.00 0.00 1.82
1973 2573 6.039270 GGATTGATCAAATTTCCCATACGTCA 59.961 38.462 13.09 0.00 0.00 4.35
1998 2598 8.801715 ATATTTTGCACTGTTGAGTTTAACTG 57.198 30.769 0.93 0.00 36.12 3.16
1999 2599 9.816354 AAATATTTTGCACTGTTGAGTTTAACT 57.184 25.926 0.00 0.00 0.00 2.24
2021 2621 6.816640 GTCCTCTAGTGCATTGTGTACAAATA 59.183 38.462 0.00 0.00 39.55 1.40
2026 2626 4.188247 TGTCCTCTAGTGCATTGTGTAC 57.812 45.455 0.00 0.00 32.95 2.90
2137 2737 3.751518 AGTTTCACGTGGGCTTATTTCT 58.248 40.909 17.00 0.00 0.00 2.52
2304 2906 1.731720 GTGGAGGAGCATGACAAGAC 58.268 55.000 0.00 0.00 0.00 3.01
2309 2915 2.512515 GGCGTGGAGGAGCATGAC 60.513 66.667 0.00 0.00 34.54 3.06
2320 2926 0.602638 TCAGCAGTAACAAGGCGTGG 60.603 55.000 5.22 0.00 0.00 4.94
2384 2995 8.150945 ACATTTGGAGTTATCTATTCATAGCGT 58.849 33.333 0.00 0.00 0.00 5.07
2532 3143 5.001232 CCGAAAGAAAGAGTTATGTTGGGA 58.999 41.667 0.00 0.00 0.00 4.37
2545 3156 2.169832 TCCTGCAGACCGAAAGAAAG 57.830 50.000 17.39 0.00 0.00 2.62
2549 3160 2.099141 TTCATCCTGCAGACCGAAAG 57.901 50.000 17.39 1.86 0.00 2.62
2806 3419 1.081892 CCAAGTCCAGTGAGCATTCG 58.918 55.000 0.00 0.00 0.00 3.34
2924 3537 1.615392 GCTTGGTCCTTGTCTTTGCAT 59.385 47.619 0.00 0.00 0.00 3.96
3299 3935 4.804108 TCAAAATGGCCAGAATTGTAACG 58.196 39.130 13.05 0.00 0.00 3.18
3386 4023 7.391148 AAATGTATCATTACCCACTTGACAC 57.609 36.000 0.00 0.00 0.00 3.67
3463 4100 1.687123 CTCCGTCCGGAATTACCTGAT 59.313 52.381 5.23 0.00 44.66 2.90
3467 4104 1.044790 TCCCTCCGTCCGGAATTACC 61.045 60.000 5.23 0.00 44.66 2.85
3476 4113 4.256462 GGAGTACTCCCTCCGTCC 57.744 66.667 28.87 4.17 43.94 4.79
3589 4226 7.419172 GGCTTATTTAGTACTCCCTCTGTGATT 60.419 40.741 0.00 0.00 0.00 2.57
3590 4227 6.042208 GGCTTATTTAGTACTCCCTCTGTGAT 59.958 42.308 0.00 0.00 0.00 3.06
3592 4229 5.602628 GGCTTATTTAGTACTCCCTCTGTG 58.397 45.833 0.00 0.00 0.00 3.66
4077 4762 2.189594 CATGTTTCTCTCCACAGGCA 57.810 50.000 0.00 0.00 0.00 4.75
4220 4905 5.513233 CCCCTAATGCAATAGCCTTCATAT 58.487 41.667 3.05 0.00 41.13 1.78
4239 4924 2.203538 CAGGTGTGCTTTGCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
5043 5728 2.202566 GAACCGCAAGCTATACTGTCC 58.797 52.381 0.00 0.00 0.00 4.02
5055 5740 2.582052 AGAGTGAAATTGGAACCGCAA 58.418 42.857 0.00 0.00 0.00 4.85
5091 5776 2.392662 TCCTTGCCTGAGATAGACCTG 58.607 52.381 0.00 0.00 0.00 4.00
5116 5801 1.736126 CTGACAACTGCTGCATACAGG 59.264 52.381 18.16 6.69 44.63 4.00
5268 5953 5.062528 TGCAGTTGAGTGAAACACATATCA 58.937 37.500 4.75 0.00 37.25 2.15
5272 5957 3.544684 TCTGCAGTTGAGTGAAACACAT 58.455 40.909 14.67 0.00 37.25 3.21
5324 6009 1.000731 CCTCCTTCTGGATCGCTGATC 59.999 57.143 9.24 9.24 42.29 2.92
5337 6022 2.095461 GTTGGAAATGCCTCCTCCTTC 58.905 52.381 0.00 0.00 36.35 3.46
5434 6119 2.525368 TCTCTGATTCGAACCCTGTGA 58.475 47.619 0.00 3.76 0.00 3.58
5445 6130 4.335037 GCCAAGTCCTGATTTCTCTGATTC 59.665 45.833 0.00 0.00 0.00 2.52
5471 6156 1.133407 GTGTTTTCAGTTGAACCGGCA 59.867 47.619 0.00 0.00 33.13 5.69
5472 6157 1.133407 TGTGTTTTCAGTTGAACCGGC 59.867 47.619 0.00 0.00 33.13 6.13
5593 6278 1.271543 TGGTTCAGGCATTCTCTGTGG 60.272 52.381 0.00 0.00 34.15 4.17
5744 6429 4.816786 AAAATCTGGCATTGCAAACAAC 57.183 36.364 11.39 0.00 38.99 3.32
5977 6725 2.813061 TCTTTTGCAGCTTTGCACTTC 58.187 42.857 0.00 0.00 45.32 3.01
6044 6792 5.048713 CACAGTTTCTGAATAGGTTGGGAAC 60.049 44.000 3.70 0.00 35.18 3.62
6066 6814 9.191376 CAACTTATTTTACGTAAATACTCGCAC 57.809 33.333 20.72 0.00 38.19 5.34
6067 6815 8.924691 ACAACTTATTTTACGTAAATACTCGCA 58.075 29.630 20.72 5.27 38.19 5.10
6068 6816 9.401445 GACAACTTATTTTACGTAAATACTCGC 57.599 33.333 20.72 3.29 38.19 5.03
6079 6827 3.120477 TGCGCCAGACAACTTATTTTACG 60.120 43.478 4.18 0.00 0.00 3.18
6149 6897 9.712305 GTATAGTTATGGAGTTGTATGATTGCT 57.288 33.333 0.00 0.00 0.00 3.91
6177 6925 1.078497 TCCATCGTTGATGCGGCTT 60.078 52.632 0.00 0.00 38.59 4.35
6234 6982 0.893727 ATTTGCCGGTGACAGGGTTC 60.894 55.000 1.90 0.00 0.00 3.62
6283 7031 1.067295 TCCCTGTCCACTTGCTGATT 58.933 50.000 0.00 0.00 0.00 2.57
6347 7095 4.813161 GTGCTCTTCTGCTATTTCTATGCA 59.187 41.667 0.00 0.00 35.30 3.96
6358 7106 1.002544 GTTACTGGGTGCTCTTCTGCT 59.997 52.381 0.00 0.00 0.00 4.24
6486 7234 0.394488 TGACGCCTTTGTTTCCACCA 60.394 50.000 0.00 0.00 0.00 4.17
6537 7285 6.867519 TCTAGGGAATGTGTGTATCAAAGA 57.132 37.500 0.00 0.00 0.00 2.52
6620 7370 2.751806 CCATTTCTGTGCTTCCTTCTCC 59.248 50.000 0.00 0.00 0.00 3.71
6635 7385 0.168128 CGTTCGCTTCCCACCATTTC 59.832 55.000 0.00 0.00 0.00 2.17
6761 7511 9.114952 TGTTAGAACATCTTGTATTTGTGAACA 57.885 29.630 0.00 0.00 33.17 3.18
6787 7537 8.612619 GTCTGTATACATCCGATTCACAAAAAT 58.387 33.333 5.91 0.00 0.00 1.82
6809 7559 4.965062 ACAAACACACTAAAACGTGTCTG 58.035 39.130 0.00 0.00 45.74 3.51
6919 7669 7.255569 TCTATTGTCATTACTGAACAGTACCG 58.744 38.462 13.25 8.33 43.02 4.02
6962 7712 4.024893 CCAAATAATGGTGTCTCGATTCCG 60.025 45.833 0.00 0.00 44.85 4.30
7006 7756 7.328249 GCAAGTGCTAATGTTGCAATTTAGTTA 59.672 33.333 22.67 14.70 44.57 2.24
7025 7775 4.611581 GCTCAACTAGTACAAAGCAAGTGC 60.612 45.833 0.00 0.00 42.49 4.40
7033 7783 2.895404 ACTCCCGCTCAACTAGTACAAA 59.105 45.455 0.00 0.00 0.00 2.83
7042 7792 1.516423 GGACCTACTCCCGCTCAAC 59.484 63.158 0.00 0.00 31.83 3.18
7043 7793 4.029472 GGACCTACTCCCGCTCAA 57.971 61.111 0.00 0.00 31.83 3.02
7057 7857 1.598869 TAGGGGTTAACCATGGGGAC 58.401 55.000 25.71 11.04 42.91 4.46
7083 7883 4.017407 TCAACTCAGACCTACCCTCTGTAT 60.017 45.833 0.00 0.00 37.12 2.29
7152 7959 6.645415 CACTACAAACTTACATCCGAGTTCTT 59.355 38.462 0.00 0.00 35.17 2.52
7200 8007 3.443681 TCGCACTATGTGACTCAGATCAA 59.556 43.478 1.52 0.00 35.23 2.57
7240 8047 0.238553 GAGCTTCAAAACCAGCCGTC 59.761 55.000 0.00 0.00 36.62 4.79
7272 8079 4.752101 CCATTTCTACCTGTGCTAGCATAC 59.248 45.833 22.51 9.70 0.00 2.39
7273 8080 4.743651 GCCATTTCTACCTGTGCTAGCATA 60.744 45.833 22.51 17.95 0.00 3.14
7274 8081 3.813443 CCATTTCTACCTGTGCTAGCAT 58.187 45.455 22.51 7.30 0.00 3.79
7365 8172 1.677637 GCCGAAGTGGGGAGGAGTAG 61.678 65.000 0.00 0.00 38.63 2.57
7366 8173 1.684734 GCCGAAGTGGGGAGGAGTA 60.685 63.158 0.00 0.00 38.63 2.59
7367 8174 3.003763 GCCGAAGTGGGGAGGAGT 61.004 66.667 0.00 0.00 38.63 3.85
7530 8341 6.073222 CCAGTTATGACGAGCTACTTGTTTTT 60.073 38.462 0.00 0.00 0.00 1.94
7607 8442 3.423571 GTCTGCGCATTCATCTTCTTTG 58.576 45.455 12.24 0.00 0.00 2.77
7705 8542 6.423905 TCTGTAGTCTGCATTCTGTAAAACAC 59.576 38.462 0.00 0.00 0.00 3.32
7733 8570 0.761802 AGCTAGGCAGGCTTGTATCC 59.238 55.000 0.00 0.00 36.56 2.59
7874 8714 5.615289 AGTTGGAATCTGTAGTATCCATGC 58.385 41.667 8.47 6.21 41.36 4.06
7898 8741 9.809096 CTGGTTCTTGCTCGTGAATATATATAT 57.191 33.333 0.00 0.00 0.00 0.86
8001 8844 1.738099 CAGTGGGAAGAAGCGACCG 60.738 63.158 0.00 0.00 0.00 4.79
8084 8927 2.181205 GACAGCTGAGAAGATTCGACG 58.819 52.381 23.35 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.