Multiple sequence alignment - TraesCS6B01G287900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G287900 chr6B 100.000 4467 0 0 1 4467 518605075 518600609 0.000000e+00 8250.0
1 TraesCS6B01G287900 chr6B 81.833 611 97 11 3833 4435 563288693 563289297 6.670000e-138 501.0
2 TraesCS6B01G287900 chr6B 86.992 123 14 2 2298 2419 36133756 36133877 2.170000e-28 137.0
3 TraesCS6B01G287900 chr6B 82.540 63 10 1 2013 2074 343781233 343781171 2.000000e-03 54.7
4 TraesCS6B01G287900 chr6D 90.369 1464 60 29 2412 3833 343637266 343635842 0.000000e+00 1847.0
5 TraesCS6B01G287900 chr6D 92.093 1037 47 13 589 1599 343638922 343637895 0.000000e+00 1428.0
6 TraesCS6B01G287900 chr6D 90.263 380 20 7 1592 1957 343637873 343637497 8.690000e-132 481.0
7 TraesCS6B01G287900 chr6D 91.597 238 17 2 2067 2301 343637499 343637262 4.310000e-85 326.0
8 TraesCS6B01G287900 chr6D 92.500 40 3 0 2035 2074 238502979 238503018 1.740000e-04 58.4
9 TraesCS6B01G287900 chr6A 91.308 1231 56 14 2412 3608 484066366 484065153 0.000000e+00 1633.0
10 TraesCS6B01G287900 chr6A 88.946 1167 64 22 810 1957 484067717 484066597 0.000000e+00 1380.0
11 TraesCS6B01G287900 chr6A 79.846 650 95 28 3835 4467 418537768 418538398 4.100000e-120 442.0
12 TraesCS6B01G287900 chr6A 91.057 123 9 2 3634 3755 484065158 484065037 9.940000e-37 165.0
13 TraesCS6B01G287900 chr6A 85.714 77 7 2 1955 2031 507116916 507116988 1.330000e-10 78.7
14 TraesCS6B01G287900 chr4D 85.804 634 70 13 3836 4467 110810310 110809695 0.000000e+00 654.0
15 TraesCS6B01G287900 chr4D 81.591 641 102 15 3835 4467 70980780 70981412 2.380000e-142 516.0
16 TraesCS6B01G287900 chr4D 87.402 127 12 4 2291 2415 3754292 3754416 4.660000e-30 143.0
17 TraesCS6B01G287900 chr7D 86.190 601 61 13 1 584 47386718 47386123 8.150000e-177 630.0
18 TraesCS6B01G287900 chr7D 85.714 77 7 3 1955 2031 253159667 253159595 1.330000e-10 78.7
19 TraesCS6B01G287900 chr7D 92.157 51 2 2 1947 1996 321247689 321247738 2.230000e-08 71.3
20 TraesCS6B01G287900 chr1D 87.978 549 46 11 1 532 376279762 376280307 8.150000e-177 630.0
21 TraesCS6B01G287900 chr1D 83.500 600 77 14 1 585 439713877 439714469 1.410000e-149 540.0
22 TraesCS6B01G287900 chr5A 85.927 604 54 15 1 587 535274988 535274399 2.280000e-172 616.0
23 TraesCS6B01G287900 chr5D 85.479 606 62 16 1 587 421673204 421672606 3.820000e-170 608.0
24 TraesCS6B01G287900 chr5D 85.596 604 60 16 1 585 439738243 439738838 3.820000e-170 608.0
25 TraesCS6B01G287900 chr5D 89.916 119 10 2 2298 2415 450942839 450942956 7.740000e-33 152.0
26 TraesCS6B01G287900 chr3D 85.033 608 66 12 1 587 537593667 537593064 2.970000e-166 595.0
27 TraesCS6B01G287900 chr2D 84.094 635 79 15 3836 4467 446266539 446265924 1.070000e-165 593.0
28 TraesCS6B01G287900 chr2D 87.805 123 13 2 2296 2417 602636326 602636447 4.660000e-30 143.0
29 TraesCS6B01G287900 chr2D 79.464 112 17 6 1955 2062 9340457 9340566 1.720000e-09 75.0
30 TraesCS6B01G287900 chr2A 84.843 607 65 13 1 588 203667977 203667379 1.790000e-163 586.0
31 TraesCS6B01G287900 chr2A 81.818 88 11 3 1944 2031 235675441 235675523 8.020000e-08 69.4
32 TraesCS6B01G287900 chr4A 84.551 602 70 12 1 583 38677686 38677089 3.880000e-160 575.0
33 TraesCS6B01G287900 chr4A 90.551 127 9 3 2290 2415 692965459 692965583 9.940000e-37 165.0
34 TraesCS6B01G287900 chr4A 87.302 126 14 2 2294 2418 714067238 714067114 4.660000e-30 143.0
35 TraesCS6B01G287900 chr4A 88.333 120 10 4 2299 2416 7163877 7163994 1.680000e-29 141.0
36 TraesCS6B01G287900 chr3A 84.317 593 73 13 3877 4467 621831682 621831108 3.020000e-156 562.0
37 TraesCS6B01G287900 chr3A 84.524 84 7 5 1949 2031 11682897 11682819 1.330000e-10 78.7
38 TraesCS6B01G287900 chr3A 84.524 84 7 5 1949 2031 11708279 11708201 1.330000e-10 78.7
39 TraesCS6B01G287900 chr3A 83.333 78 11 2 1950 2026 12868657 12868733 2.230000e-08 71.3
40 TraesCS6B01G287900 chr2B 84.655 580 69 13 3890 4467 356594099 356593538 1.090000e-155 560.0
41 TraesCS6B01G287900 chr2B 81.377 639 92 21 3842 4467 247917447 247916823 3.100000e-136 496.0
42 TraesCS6B01G287900 chr3B 81.903 641 103 10 3833 4467 542896087 542895454 3.060000e-146 529.0
43 TraesCS6B01G287900 chr3B 88.525 122 10 4 2297 2416 475383740 475383859 1.300000e-30 145.0
44 TraesCS6B01G287900 chr1B 81.269 646 97 16 3829 4467 62084139 62084767 6.670000e-138 501.0
45 TraesCS6B01G287900 chr7B 89.076 119 9 4 2299 2415 62482893 62482777 1.300000e-30 145.0
46 TraesCS6B01G287900 chr4B 81.915 94 11 6 1945 2036 570345792 570345703 1.720000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G287900 chr6B 518600609 518605075 4466 True 8250.000000 8250 100.0000 1 4467 1 chr6B.!!$R2 4466
1 TraesCS6B01G287900 chr6B 563288693 563289297 604 False 501.000000 501 81.8330 3833 4435 1 chr6B.!!$F2 602
2 TraesCS6B01G287900 chr6D 343635842 343638922 3080 True 1020.500000 1847 91.0805 589 3833 4 chr6D.!!$R1 3244
3 TraesCS6B01G287900 chr6A 484065037 484067717 2680 True 1059.333333 1633 90.4370 810 3755 3 chr6A.!!$R1 2945
4 TraesCS6B01G287900 chr6A 418537768 418538398 630 False 442.000000 442 79.8460 3835 4467 1 chr6A.!!$F1 632
5 TraesCS6B01G287900 chr4D 110809695 110810310 615 True 654.000000 654 85.8040 3836 4467 1 chr4D.!!$R1 631
6 TraesCS6B01G287900 chr4D 70980780 70981412 632 False 516.000000 516 81.5910 3835 4467 1 chr4D.!!$F2 632
7 TraesCS6B01G287900 chr7D 47386123 47386718 595 True 630.000000 630 86.1900 1 584 1 chr7D.!!$R1 583
8 TraesCS6B01G287900 chr1D 376279762 376280307 545 False 630.000000 630 87.9780 1 532 1 chr1D.!!$F1 531
9 TraesCS6B01G287900 chr1D 439713877 439714469 592 False 540.000000 540 83.5000 1 585 1 chr1D.!!$F2 584
10 TraesCS6B01G287900 chr5A 535274399 535274988 589 True 616.000000 616 85.9270 1 587 1 chr5A.!!$R1 586
11 TraesCS6B01G287900 chr5D 421672606 421673204 598 True 608.000000 608 85.4790 1 587 1 chr5D.!!$R1 586
12 TraesCS6B01G287900 chr5D 439738243 439738838 595 False 608.000000 608 85.5960 1 585 1 chr5D.!!$F1 584
13 TraesCS6B01G287900 chr3D 537593064 537593667 603 True 595.000000 595 85.0330 1 587 1 chr3D.!!$R1 586
14 TraesCS6B01G287900 chr2D 446265924 446266539 615 True 593.000000 593 84.0940 3836 4467 1 chr2D.!!$R1 631
15 TraesCS6B01G287900 chr2A 203667379 203667977 598 True 586.000000 586 84.8430 1 588 1 chr2A.!!$R1 587
16 TraesCS6B01G287900 chr4A 38677089 38677686 597 True 575.000000 575 84.5510 1 583 1 chr4A.!!$R1 582
17 TraesCS6B01G287900 chr3A 621831108 621831682 574 True 562.000000 562 84.3170 3877 4467 1 chr3A.!!$R3 590
18 TraesCS6B01G287900 chr2B 356593538 356594099 561 True 560.000000 560 84.6550 3890 4467 1 chr2B.!!$R2 577
19 TraesCS6B01G287900 chr2B 247916823 247917447 624 True 496.000000 496 81.3770 3842 4467 1 chr2B.!!$R1 625
20 TraesCS6B01G287900 chr3B 542895454 542896087 633 True 529.000000 529 81.9030 3833 4467 1 chr3B.!!$R1 634
21 TraesCS6B01G287900 chr1B 62084139 62084767 628 False 501.000000 501 81.2690 3829 4467 1 chr1B.!!$F1 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 631 0.250234 TTGCCGCTGTAGATGCTCTT 59.750 50.0 0.0 0.0 0.00 2.85 F
1349 1395 0.243907 TTCTCCGTCCTCGAAGCTTG 59.756 55.0 2.1 0.0 39.71 4.01 F
2315 2429 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.0 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2296 2410 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.0 0.0 0.0 0.00 2.73 R
3163 3291 0.596082 GCAACAGGTTTATGCCGTGT 59.404 50.0 0.0 0.0 34.03 4.49 R
3959 4147 0.173708 TTTGTTTGGTCGTTGGTGGC 59.826 50.0 0.0 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 176 9.309516 TCACATATTTCTAGTGAAATCGGTTAC 57.690 33.333 7.20 0.00 46.50 2.50
279 293 5.570234 AGTTTTAAAGTTCTTGACGCCAA 57.430 34.783 0.00 0.00 0.00 4.52
296 316 5.310451 ACGCCAAGAGTCCAATAAAAGTTA 58.690 37.500 0.00 0.00 0.00 2.24
399 427 1.206610 GAGAGGAGAGTCTTGCATGCA 59.793 52.381 18.46 18.46 0.00 3.96
434 462 0.399075 AAGGTGTACTTTGGGGTCCG 59.601 55.000 0.00 0.00 35.35 4.79
444 472 1.847798 TTGGGGTCCGTTATGCTGCT 61.848 55.000 0.00 0.00 0.00 4.24
559 588 1.534595 GGCCTCGTATCTACTGGTACG 59.465 57.143 0.00 2.85 43.61 3.67
602 631 0.250234 TTGCCGCTGTAGATGCTCTT 59.750 50.000 0.00 0.00 0.00 2.85
603 632 0.250234 TGCCGCTGTAGATGCTCTTT 59.750 50.000 0.00 0.00 0.00 2.52
604 633 1.480545 TGCCGCTGTAGATGCTCTTTA 59.519 47.619 0.00 0.00 0.00 1.85
605 634 2.103094 TGCCGCTGTAGATGCTCTTTAT 59.897 45.455 0.00 0.00 0.00 1.40
606 635 2.478134 GCCGCTGTAGATGCTCTTTATG 59.522 50.000 0.00 0.00 0.00 1.90
607 636 2.478134 CCGCTGTAGATGCTCTTTATGC 59.522 50.000 0.00 0.00 0.00 3.14
608 637 2.154580 CGCTGTAGATGCTCTTTATGCG 59.845 50.000 0.00 0.00 0.00 4.73
609 638 2.096516 GCTGTAGATGCTCTTTATGCGC 60.097 50.000 0.00 0.00 0.00 6.09
610 639 2.478134 CTGTAGATGCTCTTTATGCGCC 59.522 50.000 4.18 0.00 0.00 6.53
641 670 2.993899 CCTCTACTGGCTTGTTTGTACG 59.006 50.000 0.00 0.00 0.00 3.67
691 720 1.685765 CCATCGGGAGGACAGACCA 60.686 63.158 0.00 0.00 42.04 4.02
755 784 5.121221 TCTTTTCCCGAGAAATTCAAAGC 57.879 39.130 0.00 0.00 41.55 3.51
769 798 9.171877 AGAAATTCAAAGCAAGATTAGTAGAGG 57.828 33.333 0.00 0.00 0.00 3.69
770 799 9.167311 GAAATTCAAAGCAAGATTAGTAGAGGA 57.833 33.333 0.00 0.00 0.00 3.71
771 800 8.499403 AATTCAAAGCAAGATTAGTAGAGGAC 57.501 34.615 0.00 0.00 0.00 3.85
772 801 6.859112 TCAAAGCAAGATTAGTAGAGGACT 57.141 37.500 0.00 0.00 42.69 3.85
773 802 7.956328 TCAAAGCAAGATTAGTAGAGGACTA 57.044 36.000 0.00 0.00 39.81 2.59
774 803 8.001881 TCAAAGCAAGATTAGTAGAGGACTAG 57.998 38.462 0.00 0.00 41.75 2.57
775 804 7.834681 TCAAAGCAAGATTAGTAGAGGACTAGA 59.165 37.037 0.00 0.00 41.75 2.43
882 912 4.041917 CAGCCGCAACGCACCATT 62.042 61.111 0.00 0.00 0.00 3.16
985 1019 1.136500 CCCTGGTTTCTAGTACCTCGC 59.864 57.143 14.85 0.00 36.60 5.03
1331 1377 1.005394 CCGACTGCCCAAGTACGTT 60.005 57.895 0.00 0.00 40.07 3.99
1336 1382 0.736325 CTGCCCAAGTACGTTCTCCG 60.736 60.000 0.00 0.00 44.03 4.63
1348 1394 0.244178 GTTCTCCGTCCTCGAAGCTT 59.756 55.000 0.00 0.00 39.71 3.74
1349 1395 0.243907 TTCTCCGTCCTCGAAGCTTG 59.756 55.000 2.10 0.00 39.71 4.01
1357 1403 2.103373 TCCTCGAAGCTTGAGCACTAT 58.897 47.619 2.10 0.00 45.16 2.12
1358 1404 2.497675 TCCTCGAAGCTTGAGCACTATT 59.502 45.455 2.10 0.00 45.16 1.73
1359 1405 3.055819 TCCTCGAAGCTTGAGCACTATTT 60.056 43.478 2.10 0.00 45.16 1.40
1360 1406 3.308323 CCTCGAAGCTTGAGCACTATTTC 59.692 47.826 2.10 0.00 45.16 2.17
1361 1407 4.180057 CTCGAAGCTTGAGCACTATTTCT 58.820 43.478 2.10 0.00 45.16 2.52
1362 1408 5.324784 TCGAAGCTTGAGCACTATTTCTA 57.675 39.130 2.10 0.00 45.16 2.10
1363 1409 5.103000 TCGAAGCTTGAGCACTATTTCTAC 58.897 41.667 2.10 0.00 45.16 2.59
1364 1410 5.105716 TCGAAGCTTGAGCACTATTTCTACT 60.106 40.000 2.10 0.00 45.16 2.57
1365 1411 5.005203 CGAAGCTTGAGCACTATTTCTACTG 59.995 44.000 2.10 0.00 45.16 2.74
1366 1412 5.413309 AGCTTGAGCACTATTTCTACTGT 57.587 39.130 5.70 0.00 45.16 3.55
1367 1413 6.531503 AGCTTGAGCACTATTTCTACTGTA 57.468 37.500 5.70 0.00 45.16 2.74
1368 1414 6.568869 AGCTTGAGCACTATTTCTACTGTAG 58.431 40.000 8.55 8.55 45.16 2.74
1414 1464 3.133691 TCGCATCATATGGCAAGAGAAC 58.866 45.455 2.13 0.00 0.00 3.01
1417 1467 4.751600 CGCATCATATGGCAAGAGAACTAA 59.248 41.667 2.13 0.00 0.00 2.24
1425 1475 2.878406 GGCAAGAGAACTAACAACTGCA 59.122 45.455 0.00 0.00 0.00 4.41
1494 1544 5.250982 TCATGATGATGTGCTTCAGTTTCT 58.749 37.500 0.00 0.00 34.58 2.52
1540 1606 4.823989 GCACCCACATAAGAGATATGCTTT 59.176 41.667 0.00 0.00 44.46 3.51
1598 1666 2.157668 GGTAGCAACGTGTCAGAACATG 59.842 50.000 0.00 0.00 46.07 3.21
1599 1667 1.229428 AGCAACGTGTCAGAACATGG 58.771 50.000 0.00 0.00 45.11 3.66
1669 1768 8.694540 CCAAATGGGATCACAAACAAGATATAA 58.305 33.333 0.00 0.00 40.01 0.98
1676 1775 9.071276 GGATCACAAACAAGATATAACCATGAT 57.929 33.333 0.00 0.00 0.00 2.45
1706 1805 2.043227 AGCCGGGGAATTAGAAGAGAG 58.957 52.381 2.18 0.00 0.00 3.20
1714 1813 6.227522 GGGGAATTAGAAGAGAGATTAGCAC 58.772 44.000 0.00 0.00 0.00 4.40
1715 1814 5.923684 GGGAATTAGAAGAGAGATTAGCACG 59.076 44.000 0.00 0.00 0.00 5.34
1738 1837 0.462047 ACGATGCCGGATTTCTCACC 60.462 55.000 5.05 0.00 40.78 4.02
1924 2038 3.795101 CGACGGGTATTGTGTAGCTTAAG 59.205 47.826 0.00 0.00 0.00 1.85
1925 2039 4.117685 GACGGGTATTGTGTAGCTTAAGG 58.882 47.826 4.29 0.00 0.00 2.69
1941 2055 5.009210 AGCTTAAGGAAAAACAATGCGTACA 59.991 36.000 4.29 0.00 0.00 2.90
1954 2068 7.372451 ACAATGCGTACACTAATAAACACAT 57.628 32.000 0.00 0.00 0.00 3.21
1955 2069 8.481974 ACAATGCGTACACTAATAAACACATA 57.518 30.769 0.00 0.00 0.00 2.29
1956 2070 8.385111 ACAATGCGTACACTAATAAACACATAC 58.615 33.333 0.00 0.00 0.00 2.39
1957 2071 8.600625 CAATGCGTACACTAATAAACACATACT 58.399 33.333 0.00 0.00 0.00 2.12
1958 2072 8.712285 ATGCGTACACTAATAAACACATACTT 57.288 30.769 0.00 0.00 0.00 2.24
1959 2073 8.176814 TGCGTACACTAATAAACACATACTTC 57.823 34.615 0.00 0.00 0.00 3.01
1960 2074 7.276218 TGCGTACACTAATAAACACATACTTCC 59.724 37.037 0.00 0.00 0.00 3.46
1961 2075 7.490402 GCGTACACTAATAAACACATACTTCCT 59.510 37.037 0.00 0.00 0.00 3.36
1962 2076 9.017669 CGTACACTAATAAACACATACTTCCTC 57.982 37.037 0.00 0.00 0.00 3.71
1963 2077 9.310716 GTACACTAATAAACACATACTTCCTCC 57.689 37.037 0.00 0.00 0.00 4.30
1964 2078 7.039882 ACACTAATAAACACATACTTCCTCCG 58.960 38.462 0.00 0.00 0.00 4.63
1965 2079 7.039882 CACTAATAAACACATACTTCCTCCGT 58.960 38.462 0.00 0.00 0.00 4.69
1966 2080 7.222224 CACTAATAAACACATACTTCCTCCGTC 59.778 40.741 0.00 0.00 0.00 4.79
1967 2081 3.329929 AAACACATACTTCCTCCGTCC 57.670 47.619 0.00 0.00 0.00 4.79
1968 2082 1.192428 ACACATACTTCCTCCGTCCC 58.808 55.000 0.00 0.00 0.00 4.46
1969 2083 1.191535 CACATACTTCCTCCGTCCCA 58.808 55.000 0.00 0.00 0.00 4.37
1970 2084 1.553248 CACATACTTCCTCCGTCCCAA 59.447 52.381 0.00 0.00 0.00 4.12
1971 2085 2.027561 CACATACTTCCTCCGTCCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
1972 2086 2.640826 ACATACTTCCTCCGTCCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
1973 2087 3.265995 ACATACTTCCTCCGTCCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
1974 2088 4.472108 ACATACTTCCTCCGTCCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
1975 2089 5.045432 ACATACTTCCTCCGTCCCAAAATAA 60.045 40.000 0.00 0.00 0.00 1.40
1976 2090 3.951663 ACTTCCTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
1977 2091 3.329814 ACTTCCTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
1978 2092 3.343941 TCCTCCGTCCCAAAATAAGTG 57.656 47.619 0.00 0.00 0.00 3.16
1979 2093 2.907696 TCCTCCGTCCCAAAATAAGTGA 59.092 45.455 0.00 0.00 0.00 3.41
1980 2094 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
1981 2095 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
1982 2096 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
1983 2097 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
1984 2098 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1985 2099 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1986 2100 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1987 2101 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1988 2102 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
1989 2103 7.041644 CGTCCCAAAATAAGTGACTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
1990 2104 8.290325 GTCCCAAAATAAGTGACTCAACTTTAG 58.710 37.037 0.00 0.00 40.77 1.85
1991 2105 7.996644 TCCCAAAATAAGTGACTCAACTTTAGT 59.003 33.333 0.00 0.00 40.77 2.24
1992 2106 9.280174 CCCAAAATAAGTGACTCAACTTTAGTA 57.720 33.333 0.00 0.00 40.77 1.82
2048 2162 6.834168 TGAGTCTTTTTGAGTCACCTTTTT 57.166 33.333 0.00 0.00 46.77 1.94
2063 2177 2.547171 TTTTTGGGACGGAGGGAGT 58.453 52.632 0.00 0.00 0.00 3.85
2064 2178 1.732117 TTTTTGGGACGGAGGGAGTA 58.268 50.000 0.00 0.00 0.00 2.59
2065 2179 1.272807 TTTTGGGACGGAGGGAGTAG 58.727 55.000 0.00 0.00 0.00 2.57
2089 2203 8.712228 AGTACATATACTCATCCTGATGAACA 57.288 34.615 10.78 2.77 46.10 3.18
2099 2213 5.472137 TCATCCTGATGAACATACATGCATG 59.528 40.000 25.09 25.09 44.14 4.06
2104 2218 5.435291 TGATGAACATACATGCATGTACCA 58.565 37.500 35.53 28.34 45.11 3.25
2107 2221 6.134040 TGAACATACATGCATGTACCATTG 57.866 37.500 35.53 30.10 45.11 2.82
2110 2224 5.439721 ACATACATGCATGTACCATTGTCT 58.560 37.500 35.53 18.32 45.11 3.41
2123 2237 8.023021 TGTACCATTGTCTCTATAAGCATCTT 57.977 34.615 0.00 0.00 0.00 2.40
2125 2239 7.129457 ACCATTGTCTCTATAAGCATCTTCA 57.871 36.000 0.00 0.00 0.00 3.02
2131 2245 8.298729 TGTCTCTATAAGCATCTTCAAGAGAA 57.701 34.615 16.01 8.83 39.57 2.87
2142 2256 3.507622 TCTTCAAGAGAATGAGCTGACGA 59.492 43.478 0.00 0.00 32.31 4.20
2150 2264 3.256879 AGAATGAGCTGACGAGTCTTGAA 59.743 43.478 0.00 0.00 0.00 2.69
2169 2283 1.795768 AATTGACGCATCACAGACGT 58.204 45.000 0.00 0.00 43.83 4.34
2178 2292 3.732169 CGCATCACAGACGTCTCACTATT 60.732 47.826 16.96 0.00 0.00 1.73
2262 2376 6.127366 TGAGTATAGTTGAGATGCATGTGTCA 60.127 38.462 2.46 0.83 0.00 3.58
2286 2400 2.178912 TTGTAACCCCGCAAGAAGAG 57.821 50.000 0.00 0.00 43.02 2.85
2287 2401 1.344065 TGTAACCCCGCAAGAAGAGA 58.656 50.000 0.00 0.00 43.02 3.10
2290 2404 2.586648 AACCCCGCAAGAAGAGAAAT 57.413 45.000 0.00 0.00 43.02 2.17
2291 2405 2.586648 ACCCCGCAAGAAGAGAAATT 57.413 45.000 0.00 0.00 43.02 1.82
2295 2409 3.005791 CCCCGCAAGAAGAGAAATTGTTT 59.994 43.478 0.00 0.00 43.02 2.83
2296 2410 4.217550 CCCCGCAAGAAGAGAAATTGTTTA 59.782 41.667 0.00 0.00 43.02 2.01
2297 2411 5.393962 CCCGCAAGAAGAGAAATTGTTTAG 58.606 41.667 0.00 0.00 43.02 1.85
2299 2413 6.148811 CCCGCAAGAAGAGAAATTGTTTAGTA 59.851 38.462 0.00 0.00 43.02 1.82
2300 2414 7.015877 CCGCAAGAAGAGAAATTGTTTAGTAC 58.984 38.462 0.00 0.00 43.02 2.73
2301 2415 7.095187 CCGCAAGAAGAGAAATTGTTTAGTACT 60.095 37.037 0.00 0.00 43.02 2.73
2302 2416 7.952637 CGCAAGAAGAGAAATTGTTTAGTACTC 59.047 37.037 0.00 0.00 43.02 2.59
2303 2417 8.231161 GCAAGAAGAGAAATTGTTTAGTACTCC 58.769 37.037 0.00 0.00 0.00 3.85
2304 2418 8.722394 CAAGAAGAGAAATTGTTTAGTACTCCC 58.278 37.037 0.00 0.00 0.00 4.30
2305 2419 8.208575 AGAAGAGAAATTGTTTAGTACTCCCT 57.791 34.615 0.00 0.00 0.00 4.20
2306 2420 8.315482 AGAAGAGAAATTGTTTAGTACTCCCTC 58.685 37.037 0.00 0.00 0.00 4.30
2307 2421 6.948589 AGAGAAATTGTTTAGTACTCCCTCC 58.051 40.000 0.00 0.00 0.00 4.30
2308 2422 5.731591 AGAAATTGTTTAGTACTCCCTCCG 58.268 41.667 0.00 0.00 0.00 4.63
2309 2423 5.247792 AGAAATTGTTTAGTACTCCCTCCGT 59.752 40.000 0.00 0.00 0.00 4.69
2310 2424 4.732672 ATTGTTTAGTACTCCCTCCGTC 57.267 45.455 0.00 0.00 0.00 4.79
2311 2425 2.450476 TGTTTAGTACTCCCTCCGTCC 58.550 52.381 0.00 0.00 0.00 4.79
2312 2426 1.403323 GTTTAGTACTCCCTCCGTCCG 59.597 57.143 0.00 0.00 0.00 4.79
2313 2427 0.911769 TTAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
2314 2428 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
2315 2429 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2316 2430 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2317 2431 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2318 2432 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2319 2433 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2320 2434 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2321 2435 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2322 2436 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2323 2437 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2324 2438 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2325 2439 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2326 2440 3.581755 TCCGTCCGAAAATACTTGTCAG 58.418 45.455 0.00 0.00 0.00 3.51
2327 2441 3.256383 TCCGTCCGAAAATACTTGTCAGA 59.744 43.478 0.00 0.00 0.00 3.27
2328 2442 3.612860 CCGTCCGAAAATACTTGTCAGAG 59.387 47.826 0.00 0.00 0.00 3.35
2329 2443 3.612860 CGTCCGAAAATACTTGTCAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
2330 2444 4.617530 CGTCCGAAAATACTTGTCAGAGGA 60.618 45.833 0.00 0.00 0.00 3.71
2331 2445 5.235516 GTCCGAAAATACTTGTCAGAGGAA 58.764 41.667 0.00 0.00 0.00 3.36
2332 2446 5.875359 GTCCGAAAATACTTGTCAGAGGAAT 59.125 40.000 0.00 0.00 0.00 3.01
2333 2447 5.874810 TCCGAAAATACTTGTCAGAGGAATG 59.125 40.000 0.00 0.00 0.00 2.67
2334 2448 5.874810 CCGAAAATACTTGTCAGAGGAATGA 59.125 40.000 0.00 0.00 0.00 2.57
2335 2449 6.371548 CCGAAAATACTTGTCAGAGGAATGAA 59.628 38.462 0.00 0.00 0.00 2.57
2336 2450 7.066284 CCGAAAATACTTGTCAGAGGAATGAAT 59.934 37.037 0.00 0.00 0.00 2.57
2337 2451 7.907045 CGAAAATACTTGTCAGAGGAATGAATG 59.093 37.037 0.00 0.00 0.00 2.67
2338 2452 8.641498 AAAATACTTGTCAGAGGAATGAATGT 57.359 30.769 0.00 0.00 0.00 2.71
2339 2453 9.739276 AAAATACTTGTCAGAGGAATGAATGTA 57.261 29.630 0.00 0.00 0.00 2.29
2340 2454 9.911788 AAATACTTGTCAGAGGAATGAATGTAT 57.088 29.630 0.00 0.00 0.00 2.29
2341 2455 9.553064 AATACTTGTCAGAGGAATGAATGTATC 57.447 33.333 0.00 0.00 0.00 2.24
2342 2456 7.192852 ACTTGTCAGAGGAATGAATGTATCT 57.807 36.000 0.00 0.00 0.00 1.98
2343 2457 8.311395 ACTTGTCAGAGGAATGAATGTATCTA 57.689 34.615 0.00 0.00 0.00 1.98
2344 2458 8.762645 ACTTGTCAGAGGAATGAATGTATCTAA 58.237 33.333 0.00 0.00 0.00 2.10
2345 2459 9.258826 CTTGTCAGAGGAATGAATGTATCTAAG 57.741 37.037 0.00 0.00 0.00 2.18
2346 2460 8.539117 TGTCAGAGGAATGAATGTATCTAAGA 57.461 34.615 0.00 0.00 0.00 2.10
2347 2461 8.417106 TGTCAGAGGAATGAATGTATCTAAGAC 58.583 37.037 0.00 0.00 0.00 3.01
2348 2462 8.637986 GTCAGAGGAATGAATGTATCTAAGACT 58.362 37.037 0.00 0.00 0.00 3.24
2349 2463 9.868160 TCAGAGGAATGAATGTATCTAAGACTA 57.132 33.333 0.00 0.00 0.00 2.59
2386 2500 9.322773 AGATGCATCTATTTATATCCATTCGTG 57.677 33.333 27.73 0.00 34.85 4.35
2387 2501 9.102757 GATGCATCTATTTATATCCATTCGTGT 57.897 33.333 19.70 0.00 0.00 4.49
2388 2502 8.255394 TGCATCTATTTATATCCATTCGTGTG 57.745 34.615 0.00 0.00 0.00 3.82
2389 2503 8.093927 TGCATCTATTTATATCCATTCGTGTGA 58.906 33.333 0.00 0.00 0.00 3.58
2390 2504 8.383619 GCATCTATTTATATCCATTCGTGTGAC 58.616 37.037 0.00 0.00 0.00 3.67
2391 2505 9.423061 CATCTATTTATATCCATTCGTGTGACA 57.577 33.333 0.00 0.00 0.00 3.58
2392 2506 9.996554 ATCTATTTATATCCATTCGTGTGACAA 57.003 29.630 0.00 0.00 0.00 3.18
2393 2507 9.476202 TCTATTTATATCCATTCGTGTGACAAG 57.524 33.333 0.00 0.00 0.00 3.16
2394 2508 9.261180 CTATTTATATCCATTCGTGTGACAAGT 57.739 33.333 0.00 0.00 0.00 3.16
2396 2510 9.778741 ATTTATATCCATTCGTGTGACAAGTAT 57.221 29.630 0.00 0.00 0.00 2.12
2397 2511 9.607988 TTTATATCCATTCGTGTGACAAGTATT 57.392 29.630 0.00 0.00 0.00 1.89
2398 2512 9.607988 TTATATCCATTCGTGTGACAAGTATTT 57.392 29.630 0.00 0.00 0.00 1.40
2399 2513 5.856126 TCCATTCGTGTGACAAGTATTTC 57.144 39.130 0.00 0.00 0.00 2.17
2400 2514 4.693566 TCCATTCGTGTGACAAGTATTTCC 59.306 41.667 0.00 0.00 0.00 3.13
2401 2515 4.435518 CCATTCGTGTGACAAGTATTTCCG 60.436 45.833 0.00 0.00 0.00 4.30
2402 2516 2.679450 TCGTGTGACAAGTATTTCCGG 58.321 47.619 0.00 0.00 0.00 5.14
2403 2517 2.296752 TCGTGTGACAAGTATTTCCGGA 59.703 45.455 0.00 0.00 0.00 5.14
2404 2518 3.056393 TCGTGTGACAAGTATTTCCGGAT 60.056 43.478 4.15 0.00 0.00 4.18
2405 2519 3.062099 CGTGTGACAAGTATTTCCGGATG 59.938 47.826 4.15 0.97 0.00 3.51
2406 2520 3.374058 GTGTGACAAGTATTTCCGGATGG 59.626 47.826 4.15 0.00 0.00 3.51
2407 2521 3.262151 TGTGACAAGTATTTCCGGATGGA 59.738 43.478 4.15 0.00 44.61 3.41
2442 2556 1.003851 ATGATCACCGGTTAAACGCG 58.996 50.000 2.97 3.53 0.00 6.01
2475 2589 0.943673 TTGCAGTCGTTGACATGTGG 59.056 50.000 1.15 0.00 34.60 4.17
2542 2657 9.007494 TGATAACCTTTACTACTAGGACTAGGA 57.993 37.037 10.81 1.27 37.49 2.94
2557 2672 7.104974 AGGACTAGGAGTAGGATTTATAGCA 57.895 40.000 0.00 0.00 0.00 3.49
2595 2710 4.243007 AGCTCATTTTGTTTGCTGGTAC 57.757 40.909 0.00 0.00 32.32 3.34
2915 3035 3.249799 CGAGTCGATCAGCTGAGACTTAT 59.750 47.826 29.18 14.96 43.17 1.73
2943 3063 6.673154 TGTGAAGTGATTGATGCAGATTAG 57.327 37.500 0.00 0.00 0.00 1.73
3020 3140 1.004560 GCTACTGGACAGCAGTGCA 60.005 57.895 19.20 2.96 44.30 4.57
3145 3273 4.442472 GCAATCTAGCATGCCTCCAAAAAT 60.442 41.667 15.66 0.00 36.56 1.82
3220 3348 6.060136 AGATCGGCATAACACACTACTAGTA 58.940 40.000 1.89 1.89 0.00 1.82
3221 3349 6.715718 AGATCGGCATAACACACTACTAGTAT 59.284 38.462 2.33 0.00 0.00 2.12
3222 3350 7.881751 AGATCGGCATAACACACTACTAGTATA 59.118 37.037 2.33 0.00 0.00 1.47
3277 3420 3.004315 TGACGGTTTGCTCTTTGGAATTC 59.996 43.478 0.00 0.00 0.00 2.17
3395 3538 3.897122 GGTGGTTGGGAGTGGGCA 61.897 66.667 0.00 0.00 0.00 5.36
3458 3601 0.239347 CGTGCCTTTCTTGCTCCTTG 59.761 55.000 0.00 0.00 0.00 3.61
3520 3669 0.530744 TGTACATGGACCGAGAGTGC 59.469 55.000 5.38 0.00 37.33 4.40
3533 3682 2.420642 GAGAGTGCTTGATGAGTGCAA 58.579 47.619 0.00 0.00 38.50 4.08
3559 3714 3.425713 CATGCGTGCGCCTGAGTT 61.426 61.111 14.84 0.00 38.70 3.01
3560 3715 2.669569 ATGCGTGCGCCTGAGTTT 60.670 55.556 14.16 0.00 41.09 2.66
3580 3738 9.337396 TGAGTTTGTGTGTGTTATCTCTTAATT 57.663 29.630 0.00 0.00 0.00 1.40
3593 3751 9.176181 GTTATCTCTTAATTTGCGTGTGAAAAA 57.824 29.630 0.00 0.00 0.00 1.94
3616 3774 4.142902 ACTGAACCGATATGCAACGAAAAG 60.143 41.667 11.69 7.07 0.00 2.27
3620 3778 2.031683 CCGATATGCAACGAAAAGGGTC 59.968 50.000 11.69 0.00 0.00 4.46
3623 3781 2.568623 ATGCAACGAAAAGGGTCTCT 57.431 45.000 0.00 0.00 0.00 3.10
3625 3783 2.762745 TGCAACGAAAAGGGTCTCTAC 58.237 47.619 0.00 0.00 0.00 2.59
3628 3786 3.925299 GCAACGAAAAGGGTCTCTACTAC 59.075 47.826 0.00 0.00 0.00 2.73
3639 3797 6.432581 AGGGTCTCTACTACATACATGTTGA 58.567 40.000 2.30 0.00 41.97 3.18
3642 3800 6.037940 GGTCTCTACTACATACATGTTGACGA 59.962 42.308 2.30 5.61 41.97 4.20
3655 3813 3.815809 TGTTGACGACTGGGATTTCTTT 58.184 40.909 0.00 0.00 0.00 2.52
3656 3814 3.813166 TGTTGACGACTGGGATTTCTTTC 59.187 43.478 0.00 0.00 0.00 2.62
3666 3824 3.010808 TGGGATTTCTTTCCGGGTTATGT 59.989 43.478 0.00 0.00 36.58 2.29
3759 3928 6.396829 TCATGTCACTGATCAATCTATCGT 57.603 37.500 0.00 0.00 0.00 3.73
3760 3929 6.211515 TCATGTCACTGATCAATCTATCGTG 58.788 40.000 0.00 0.00 34.56 4.35
3761 3930 4.363138 TGTCACTGATCAATCTATCGTGC 58.637 43.478 0.00 0.00 33.92 5.34
3762 3931 3.738282 GTCACTGATCAATCTATCGTGCC 59.262 47.826 0.00 0.00 33.92 5.01
3763 3932 2.728318 CACTGATCAATCTATCGTGCCG 59.272 50.000 0.00 0.00 0.00 5.69
3785 3954 4.270008 GCCATTTCTAAGGCCAACTCTAA 58.730 43.478 5.01 0.00 45.18 2.10
3795 3964 3.039011 GGCCAACTCTAACAGATCCCTA 58.961 50.000 0.00 0.00 0.00 3.53
3796 3965 3.454812 GGCCAACTCTAACAGATCCCTAA 59.545 47.826 0.00 0.00 0.00 2.69
3797 3966 4.443621 GCCAACTCTAACAGATCCCTAAC 58.556 47.826 0.00 0.00 0.00 2.34
3798 3967 4.081087 GCCAACTCTAACAGATCCCTAACA 60.081 45.833 0.00 0.00 0.00 2.41
3799 3968 5.570844 GCCAACTCTAACAGATCCCTAACAA 60.571 44.000 0.00 0.00 0.00 2.83
3947 4135 1.747325 GCACAAACACCACCAGGCAT 61.747 55.000 0.00 0.00 39.06 4.40
3953 4141 1.973281 CACCACCAGGCATGTCCAC 60.973 63.158 0.00 0.00 39.06 4.02
3956 4144 1.073722 CACCAGGCATGTCCACAGT 59.926 57.895 0.00 0.98 37.29 3.55
3959 4147 0.675837 CCAGGCATGTCCACAGTCAG 60.676 60.000 0.00 0.00 37.29 3.51
3981 4170 3.526534 CCACCAACGACCAAACAAAAAT 58.473 40.909 0.00 0.00 0.00 1.82
3993 4182 7.215381 CGACCAAACAAAAATTACAAAGCAAAC 59.785 33.333 0.00 0.00 0.00 2.93
3994 4183 7.875971 ACCAAACAAAAATTACAAAGCAAACA 58.124 26.923 0.00 0.00 0.00 2.83
3998 4187 5.120830 ACAAAAATTACAAAGCAAACACGCA 59.879 32.000 0.00 0.00 0.00 5.24
4015 4204 1.854743 CGCATGTCCTAACAGATCACG 59.145 52.381 0.00 0.00 39.20 4.35
4039 4228 4.394078 CGTCTCGACCAACGCCGA 62.394 66.667 0.00 0.00 42.26 5.54
4067 4256 0.759060 AAAGGCCAACCACTTCCACC 60.759 55.000 5.01 0.00 39.06 4.61
4092 4282 1.163420 TTGCTTGTCGACGCACCATT 61.163 50.000 16.31 0.00 35.60 3.16
4097 4288 2.047655 TCGACGCACCATTCACCC 60.048 61.111 0.00 0.00 0.00 4.61
4098 4289 3.124921 CGACGCACCATTCACCCC 61.125 66.667 0.00 0.00 0.00 4.95
4112 4303 0.830648 CACCCCGAATGCCTAAGAGA 59.169 55.000 0.00 0.00 0.00 3.10
4124 4315 2.704572 CCTAAGAGAAGGTGGCAAGTG 58.295 52.381 0.00 0.00 31.46 3.16
4159 4350 5.191323 ACTTGATCAGATCCAAGGAAGACAT 59.809 40.000 18.88 2.86 42.86 3.06
4269 4460 2.173519 CCAAGCCATGTCTCCAAACAT 58.826 47.619 0.00 0.00 40.49 2.71
4297 4488 1.069703 TCAACAGAGTAACGACGTCGG 60.070 52.381 37.89 22.16 44.95 4.79
4298 4489 1.069703 CAACAGAGTAACGACGTCGGA 60.070 52.381 37.89 24.49 44.95 4.55
4379 4573 1.418264 TCCACACAACGAGGGAAATGA 59.582 47.619 0.00 0.00 0.00 2.57
4385 4579 2.742053 ACAACGAGGGAAATGACGAATG 59.258 45.455 0.00 0.00 0.00 2.67
4409 4603 4.388499 GGCGACGCCTCCAAGGAA 62.388 66.667 31.30 0.00 46.69 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 170 6.959311 CCATTTCACTAGAAAAATCGTAACCG 59.041 38.462 0.00 0.00 46.06 4.44
168 176 9.855021 AATAAACCCATTTCACTAGAAAAATCG 57.145 29.630 0.00 0.00 46.06 3.34
248 262 9.880064 GTCAAGAACTTTAAAACTAGACCAATC 57.120 33.333 0.00 0.00 0.00 2.67
279 293 8.895737 TCGTTTTTGTAACTTTTATTGGACTCT 58.104 29.630 0.00 0.00 0.00 3.24
354 381 2.330231 ACGTGCCGAACAAATTCATG 57.670 45.000 1.50 0.00 34.14 3.07
358 385 3.749088 TCATTCTACGTGCCGAACAAATT 59.251 39.130 0.00 0.00 0.00 1.82
377 405 2.158928 GCATGCAAGACTCTCCTCTCAT 60.159 50.000 14.21 0.00 0.00 2.90
399 427 1.982958 ACCTTTTGTCAGGGACGGTAT 59.017 47.619 0.00 0.00 38.42 2.73
434 462 7.539712 TTAGTCAAATCAGTAGCAGCATAAC 57.460 36.000 0.00 0.00 0.00 1.89
479 508 7.443575 GGCCCATCTAGATATATAGCACAAATG 59.556 40.741 4.54 0.00 0.00 2.32
483 512 5.528337 TGGCCCATCTAGATATATAGCACA 58.472 41.667 4.54 2.82 0.00 4.57
492 521 5.790096 TGAAATGGTATGGCCCATCTAGATA 59.210 40.000 4.54 0.00 44.55 1.98
559 588 2.414840 ATTTTGCGCCGTTGGGTCAC 62.415 55.000 4.18 0.00 34.97 3.67
602 631 2.202690 CACGACCGAGGCGCATAA 60.203 61.111 10.83 0.00 0.00 1.90
603 632 4.865761 GCACGACCGAGGCGCATA 62.866 66.667 10.83 0.00 0.00 3.14
608 637 3.138798 TAGAGGCACGACCGAGGC 61.139 66.667 5.38 5.38 46.52 4.70
609 638 1.749638 AGTAGAGGCACGACCGAGG 60.750 63.158 0.00 0.00 46.52 4.63
610 639 1.429825 CAGTAGAGGCACGACCGAG 59.570 63.158 0.00 0.00 46.52 4.63
639 668 1.945394 GATGGAAATGAGCATGCTCGT 59.055 47.619 35.68 34.01 45.48 4.18
641 670 3.478509 AGAGATGGAAATGAGCATGCTC 58.521 45.455 35.76 35.76 43.01 4.26
691 720 2.125673 GCTCATGTGCGTACCGGT 60.126 61.111 13.98 13.98 0.00 5.28
728 757 8.419076 TTTGAATTTCTCGGGAAAAGAAAAAG 57.581 30.769 15.66 0.00 43.76 2.27
755 784 8.934023 AATCCTCTAGTCCTCTACTAATCTTG 57.066 38.462 0.00 0.00 40.21 3.02
768 797 1.203025 TCCGGCCTAATCCTCTAGTCC 60.203 57.143 0.00 0.00 0.00 3.85
769 798 2.164338 CTCCGGCCTAATCCTCTAGTC 58.836 57.143 0.00 0.00 0.00 2.59
770 799 1.781529 TCTCCGGCCTAATCCTCTAGT 59.218 52.381 0.00 0.00 0.00 2.57
771 800 2.588464 TCTCCGGCCTAATCCTCTAG 57.412 55.000 0.00 0.00 0.00 2.43
772 801 3.544698 AATCTCCGGCCTAATCCTCTA 57.455 47.619 0.00 0.00 0.00 2.43
773 802 2.407340 AATCTCCGGCCTAATCCTCT 57.593 50.000 0.00 0.00 0.00 3.69
774 803 3.617775 GCTTAATCTCCGGCCTAATCCTC 60.618 52.174 0.00 0.00 0.00 3.71
775 804 2.303311 GCTTAATCTCCGGCCTAATCCT 59.697 50.000 0.00 0.00 0.00 3.24
847 876 1.227734 GTGGCGTGGTGTAGTGGTT 60.228 57.895 0.00 0.00 0.00 3.67
985 1019 3.498774 ACCCATATGGAAGCTTAGCTG 57.501 47.619 24.00 4.60 36.82 4.24
1092 1138 3.946201 AGCGCCACCAGCTTGTCT 61.946 61.111 2.29 0.00 43.24 3.41
1305 1351 0.036388 TTGGGCAGTCGGAGATGTTC 60.036 55.000 0.00 0.00 40.67 3.18
1331 1377 0.608308 TCAAGCTTCGAGGACGGAGA 60.608 55.000 0.00 0.00 46.99 3.71
1336 1382 2.450619 GTGCTCAAGCTTCGAGGAC 58.549 57.895 23.70 23.70 43.26 3.85
1337 1383 1.545841 TAGTGCTCAAGCTTCGAGGA 58.454 50.000 20.36 17.05 42.66 3.71
1342 1388 5.872070 ACAGTAGAAATAGTGCTCAAGCTTC 59.128 40.000 0.00 0.00 42.66 3.86
1348 1394 7.939784 TCTTCTACAGTAGAAATAGTGCTCA 57.060 36.000 21.15 0.00 43.63 4.26
1349 1395 9.458374 GATTCTTCTACAGTAGAAATAGTGCTC 57.542 37.037 21.15 9.49 43.63 4.26
1357 1403 7.176165 TCGTTCCAGATTCTTCTACAGTAGAAA 59.824 37.037 21.15 10.17 43.63 2.52
1358 1404 6.657966 TCGTTCCAGATTCTTCTACAGTAGAA 59.342 38.462 19.92 19.92 42.19 2.10
1359 1405 6.178324 TCGTTCCAGATTCTTCTACAGTAGA 58.822 40.000 6.15 6.15 0.00 2.59
1360 1406 6.438259 TCGTTCCAGATTCTTCTACAGTAG 57.562 41.667 0.47 0.47 0.00 2.57
1361 1407 8.568794 CATATCGTTCCAGATTCTTCTACAGTA 58.431 37.037 0.00 0.00 32.39 2.74
1362 1408 5.923733 ATCGTTCCAGATTCTTCTACAGT 57.076 39.130 0.00 0.00 0.00 3.55
1363 1409 7.429633 ACATATCGTTCCAGATTCTTCTACAG 58.570 38.462 0.00 0.00 32.39 2.74
1364 1410 7.348080 ACATATCGTTCCAGATTCTTCTACA 57.652 36.000 0.00 0.00 32.39 2.74
1365 1411 9.562583 GATACATATCGTTCCAGATTCTTCTAC 57.437 37.037 0.00 0.00 32.39 2.59
1366 1412 9.297037 TGATACATATCGTTCCAGATTCTTCTA 57.703 33.333 0.00 0.00 35.48 2.10
1367 1413 8.183104 TGATACATATCGTTCCAGATTCTTCT 57.817 34.615 0.00 0.00 35.48 2.85
1368 1414 8.994429 ATGATACATATCGTTCCAGATTCTTC 57.006 34.615 0.00 0.00 35.48 2.87
1414 1464 6.684131 CGTATGAACATGAATGCAGTTGTTAG 59.316 38.462 4.34 0.00 29.80 2.34
1417 1467 4.142622 CCGTATGAACATGAATGCAGTTGT 60.143 41.667 0.00 0.00 0.00 3.32
1425 1475 5.928839 GCATCTACTCCGTATGAACATGAAT 59.071 40.000 0.00 0.00 0.00 2.57
1451 1501 4.991776 TGATCCCACTAACATCAACCAAA 58.008 39.130 0.00 0.00 0.00 3.28
1494 1544 0.250209 TTTAAGCGGTGGTGGCGTTA 60.250 50.000 0.00 0.00 35.00 3.18
1540 1606 2.093553 AGCGTACAAATTACGGGCCTAA 60.094 45.455 0.84 0.00 40.86 2.69
1598 1666 2.359478 CCACTGCGTGTAACCCCC 60.359 66.667 7.68 0.00 0.00 5.40
1599 1667 3.053896 GCCACTGCGTGTAACCCC 61.054 66.667 7.68 0.00 0.00 4.95
1648 1747 6.726379 TGGTTATATCTTGTTTGTGATCCCA 58.274 36.000 0.00 0.00 0.00 4.37
1669 1768 2.498167 GGCTTCGCTAATCATCATGGT 58.502 47.619 0.00 0.00 0.00 3.55
1676 1775 1.618876 TTCCCCGGCTTCGCTAATCA 61.619 55.000 0.00 0.00 0.00 2.57
1694 1793 6.547880 TCCTCGTGCTAATCTCTCTTCTAATT 59.452 38.462 0.00 0.00 0.00 1.40
1706 1805 1.132588 GCATCGTCCTCGTGCTAATC 58.867 55.000 0.00 0.00 39.25 1.75
1714 1813 1.215655 GAAATCCGGCATCGTCCTCG 61.216 60.000 0.00 0.00 38.55 4.63
1715 1814 0.105039 AGAAATCCGGCATCGTCCTC 59.895 55.000 0.00 0.00 33.95 3.71
1750 1849 3.866582 GACCATCCCGGGCTCTGG 61.867 72.222 26.22 26.22 41.26 3.86
1924 2038 8.632551 GTTTATTAGTGTACGCATTGTTTTTCC 58.367 33.333 9.48 0.00 0.00 3.13
1925 2039 9.171701 TGTTTATTAGTGTACGCATTGTTTTTC 57.828 29.630 9.48 0.00 0.00 2.29
1941 2055 7.179076 ACGGAGGAAGTATGTGTTTATTAGT 57.821 36.000 0.00 0.00 0.00 2.24
1954 2068 4.533311 ACTTATTTTGGGACGGAGGAAGTA 59.467 41.667 0.00 0.00 0.00 2.24
1955 2069 3.329814 ACTTATTTTGGGACGGAGGAAGT 59.670 43.478 0.00 0.00 0.00 3.01
1956 2070 3.689649 CACTTATTTTGGGACGGAGGAAG 59.310 47.826 0.00 0.00 0.00 3.46
1957 2071 3.328343 TCACTTATTTTGGGACGGAGGAA 59.672 43.478 0.00 0.00 0.00 3.36
1958 2072 2.907696 TCACTTATTTTGGGACGGAGGA 59.092 45.455 0.00 0.00 0.00 3.71
1959 2073 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1960 2074 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
1961 2075 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
1962 2076 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
1963 2077 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
1964 2078 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1965 2079 7.996644 ACTAAAGTTGAGTCACTTATTTTGGGA 59.003 33.333 0.00 0.00 35.87 4.37
1966 2080 8.166422 ACTAAAGTTGAGTCACTTATTTTGGG 57.834 34.615 0.00 0.00 35.87 4.12
2015 2129 9.832445 TGACTCAAAAAGACTCAACTTTATACT 57.168 29.630 0.00 0.00 38.86 2.12
2016 2130 9.865484 GTGACTCAAAAAGACTCAACTTTATAC 57.135 33.333 0.00 0.00 38.86 1.47
2017 2131 9.052759 GGTGACTCAAAAAGACTCAACTTTATA 57.947 33.333 0.00 0.00 38.86 0.98
2018 2132 7.775561 AGGTGACTCAAAAAGACTCAACTTTAT 59.224 33.333 0.00 0.00 34.63 1.40
2019 2133 7.110155 AGGTGACTCAAAAAGACTCAACTTTA 58.890 34.615 0.00 0.00 34.63 1.85
2020 2134 5.946377 AGGTGACTCAAAAAGACTCAACTTT 59.054 36.000 0.00 0.00 34.63 2.66
2021 2135 5.501156 AGGTGACTCAAAAAGACTCAACTT 58.499 37.500 0.00 0.00 34.63 2.66
2022 2136 5.104259 AGGTGACTCAAAAAGACTCAACT 57.896 39.130 0.00 0.00 33.79 3.16
2023 2137 5.819825 AAGGTGACTCAAAAAGACTCAAC 57.180 39.130 0.00 0.00 42.68 3.18
2024 2138 6.834168 AAAAGGTGACTCAAAAAGACTCAA 57.166 33.333 0.00 0.00 42.68 3.02
2025 2139 6.834168 AAAAAGGTGACTCAAAAAGACTCA 57.166 33.333 0.00 0.00 42.68 3.41
2045 2159 1.626825 CTACTCCCTCCGTCCCAAAAA 59.373 52.381 0.00 0.00 0.00 1.94
2046 2160 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
2047 2161 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2048 2162 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
2049 2163 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
2050 2164 0.257039 TGTACTACTCCCTCCGTCCC 59.743 60.000 0.00 0.00 0.00 4.46
2051 2165 2.361643 ATGTACTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
2052 2166 5.803552 AGTATATGTACTACTCCCTCCGTC 58.196 45.833 0.00 0.00 39.36 4.79
2053 2167 5.309020 TGAGTATATGTACTACTCCCTCCGT 59.691 44.000 14.76 0.00 42.86 4.69
2054 2168 5.802465 TGAGTATATGTACTACTCCCTCCG 58.198 45.833 14.76 0.00 42.86 4.63
2055 2169 6.829811 GGATGAGTATATGTACTACTCCCTCC 59.170 46.154 14.76 15.39 42.86 4.30
2056 2170 7.554835 CAGGATGAGTATATGTACTACTCCCTC 59.445 44.444 18.68 11.92 42.86 4.30
2057 2171 7.239984 TCAGGATGAGTATATGTACTACTCCCT 59.760 40.741 18.68 12.41 42.56 4.20
2058 2172 7.403671 TCAGGATGAGTATATGTACTACTCCC 58.596 42.308 18.68 10.91 42.56 4.30
2099 2213 8.144478 TGAAGATGCTTATAGAGACAATGGTAC 58.856 37.037 0.00 0.00 0.00 3.34
2104 2218 8.922237 TCTCTTGAAGATGCTTATAGAGACAAT 58.078 33.333 12.77 0.00 33.65 2.71
2107 2221 9.195411 CATTCTCTTGAAGATGCTTATAGAGAC 57.805 37.037 14.90 0.00 37.11 3.36
2110 2224 7.871973 GCTCATTCTCTTGAAGATGCTTATAGA 59.128 37.037 0.00 0.00 35.44 1.98
2123 2237 2.822561 ACTCGTCAGCTCATTCTCTTGA 59.177 45.455 0.00 0.00 0.00 3.02
2125 2239 3.088532 AGACTCGTCAGCTCATTCTCTT 58.911 45.455 0.00 0.00 0.00 2.85
2131 2245 3.667497 TTTCAAGACTCGTCAGCTCAT 57.333 42.857 0.00 0.00 0.00 2.90
2142 2256 3.814842 TGTGATGCGTCAATTTCAAGACT 59.185 39.130 10.93 0.00 35.80 3.24
2150 2264 1.795768 ACGTCTGTGATGCGTCAATT 58.204 45.000 10.93 0.00 35.80 2.32
2169 2283 3.928727 ACGTTTCCGTCAATAGTGAGA 57.071 42.857 0.00 0.00 46.28 3.27
2184 2298 4.634199 TCTTTCTATGGGAAACGACGTTT 58.366 39.130 24.99 24.99 38.81 3.60
2232 2346 8.424133 ACATGCATCTCAACTATACTCACAATA 58.576 33.333 0.00 0.00 0.00 1.90
2242 2356 5.095145 AGTGACACATGCATCTCAACTAT 57.905 39.130 8.59 0.00 0.00 2.12
2262 2376 3.706600 TCTTGCGGGGTTACAAATAGT 57.293 42.857 0.00 0.00 0.00 2.12
2286 2400 5.485620 ACGGAGGGAGTACTAAACAATTTC 58.514 41.667 0.00 0.00 0.00 2.17
2287 2401 5.485620 GACGGAGGGAGTACTAAACAATTT 58.514 41.667 0.00 0.00 0.00 1.82
2290 2404 2.827921 GGACGGAGGGAGTACTAAACAA 59.172 50.000 0.00 0.00 0.00 2.83
2291 2405 2.450476 GGACGGAGGGAGTACTAAACA 58.550 52.381 0.00 0.00 0.00 2.83
2295 2409 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
2296 2410 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
2297 2411 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
2299 2413 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2300 2414 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2301 2415 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2302 2416 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2303 2417 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2304 2418 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2305 2419 3.256383 TCTGACAAGTATTTTCGGACGGA 59.744 43.478 0.00 0.00 0.00 4.69
2306 2420 3.581755 TCTGACAAGTATTTTCGGACGG 58.418 45.455 0.00 0.00 0.00 4.79
2307 2421 3.612860 CCTCTGACAAGTATTTTCGGACG 59.387 47.826 0.00 0.00 0.00 4.79
2308 2422 4.817517 TCCTCTGACAAGTATTTTCGGAC 58.182 43.478 0.00 0.00 0.00 4.79
2309 2423 5.477607 TTCCTCTGACAAGTATTTTCGGA 57.522 39.130 0.00 0.00 0.00 4.55
2310 2424 5.874810 TCATTCCTCTGACAAGTATTTTCGG 59.125 40.000 0.00 0.00 0.00 4.30
2311 2425 6.968131 TCATTCCTCTGACAAGTATTTTCG 57.032 37.500 0.00 0.00 0.00 3.46
2312 2426 8.734386 ACATTCATTCCTCTGACAAGTATTTTC 58.266 33.333 0.00 0.00 0.00 2.29
2313 2427 8.641498 ACATTCATTCCTCTGACAAGTATTTT 57.359 30.769 0.00 0.00 0.00 1.82
2314 2428 9.911788 ATACATTCATTCCTCTGACAAGTATTT 57.088 29.630 0.00 0.00 0.00 1.40
2315 2429 9.553064 GATACATTCATTCCTCTGACAAGTATT 57.447 33.333 0.00 0.00 0.00 1.89
2316 2430 8.932610 AGATACATTCATTCCTCTGACAAGTAT 58.067 33.333 0.00 0.00 0.00 2.12
2317 2431 8.311395 AGATACATTCATTCCTCTGACAAGTA 57.689 34.615 0.00 0.00 0.00 2.24
2318 2432 7.192852 AGATACATTCATTCCTCTGACAAGT 57.807 36.000 0.00 0.00 0.00 3.16
2319 2433 9.258826 CTTAGATACATTCATTCCTCTGACAAG 57.741 37.037 0.00 0.00 0.00 3.16
2320 2434 8.981659 TCTTAGATACATTCATTCCTCTGACAA 58.018 33.333 0.00 0.00 0.00 3.18
2321 2435 8.417106 GTCTTAGATACATTCATTCCTCTGACA 58.583 37.037 0.00 0.00 0.00 3.58
2322 2436 8.637986 AGTCTTAGATACATTCATTCCTCTGAC 58.362 37.037 0.00 0.00 0.00 3.51
2323 2437 8.774546 AGTCTTAGATACATTCATTCCTCTGA 57.225 34.615 0.00 0.00 0.00 3.27
2360 2474 9.322773 CACGAATGGATATAAATAGATGCATCT 57.677 33.333 30.85 30.85 35.39 2.90
2361 2475 9.102757 ACACGAATGGATATAAATAGATGCATC 57.897 33.333 19.37 19.37 35.39 3.91
2362 2476 8.886719 CACACGAATGGATATAAATAGATGCAT 58.113 33.333 0.00 0.00 37.52 3.96
2363 2477 8.093927 TCACACGAATGGATATAAATAGATGCA 58.906 33.333 0.00 0.00 30.10 3.96
2364 2478 8.383619 GTCACACGAATGGATATAAATAGATGC 58.616 37.037 0.00 0.00 0.00 3.91
2365 2479 9.423061 TGTCACACGAATGGATATAAATAGATG 57.577 33.333 0.00 0.00 0.00 2.90
2366 2480 9.996554 TTGTCACACGAATGGATATAAATAGAT 57.003 29.630 0.00 0.00 0.00 1.98
2367 2481 9.476202 CTTGTCACACGAATGGATATAAATAGA 57.524 33.333 0.00 0.00 0.00 1.98
2368 2482 9.261180 ACTTGTCACACGAATGGATATAAATAG 57.739 33.333 0.00 0.00 0.00 1.73
2370 2484 9.778741 ATACTTGTCACACGAATGGATATAAAT 57.221 29.630 0.00 0.00 0.00 1.40
2371 2485 9.607988 AATACTTGTCACACGAATGGATATAAA 57.392 29.630 0.00 0.00 0.00 1.40
2372 2486 9.607988 AAATACTTGTCACACGAATGGATATAA 57.392 29.630 0.00 0.00 0.00 0.98
2373 2487 9.256477 GAAATACTTGTCACACGAATGGATATA 57.744 33.333 0.00 0.00 0.00 0.86
2374 2488 7.226720 GGAAATACTTGTCACACGAATGGATAT 59.773 37.037 0.00 0.00 0.00 1.63
2375 2489 6.537301 GGAAATACTTGTCACACGAATGGATA 59.463 38.462 0.00 0.00 0.00 2.59
2376 2490 5.354234 GGAAATACTTGTCACACGAATGGAT 59.646 40.000 0.00 0.00 0.00 3.41
2377 2491 4.693566 GGAAATACTTGTCACACGAATGGA 59.306 41.667 0.00 0.00 0.00 3.41
2378 2492 4.435518 CGGAAATACTTGTCACACGAATGG 60.436 45.833 0.00 0.00 0.00 3.16
2379 2493 4.435518 CCGGAAATACTTGTCACACGAATG 60.436 45.833 0.00 0.00 0.00 2.67
2380 2494 3.682858 CCGGAAATACTTGTCACACGAAT 59.317 43.478 0.00 0.00 0.00 3.34
2381 2495 3.061322 CCGGAAATACTTGTCACACGAA 58.939 45.455 0.00 0.00 0.00 3.85
2382 2496 2.296752 TCCGGAAATACTTGTCACACGA 59.703 45.455 0.00 0.00 0.00 4.35
2383 2497 2.679450 TCCGGAAATACTTGTCACACG 58.321 47.619 0.00 0.00 0.00 4.49
2384 2498 3.374058 CCATCCGGAAATACTTGTCACAC 59.626 47.826 9.01 0.00 0.00 3.82
2385 2499 3.262151 TCCATCCGGAAATACTTGTCACA 59.738 43.478 9.01 0.00 38.83 3.58
2386 2500 3.869065 TCCATCCGGAAATACTTGTCAC 58.131 45.455 9.01 0.00 38.83 3.67
2387 2501 3.118408 CCTCCATCCGGAAATACTTGTCA 60.118 47.826 9.01 0.00 42.21 3.58
2388 2502 3.134081 TCCTCCATCCGGAAATACTTGTC 59.866 47.826 9.01 0.00 42.21 3.18
2389 2503 3.112263 TCCTCCATCCGGAAATACTTGT 58.888 45.455 9.01 0.00 42.21 3.16
2390 2504 3.838244 TCCTCCATCCGGAAATACTTG 57.162 47.619 9.01 0.00 42.21 3.16
2391 2505 3.780850 ACTTCCTCCATCCGGAAATACTT 59.219 43.478 9.01 0.00 42.21 2.24
2392 2506 3.385115 ACTTCCTCCATCCGGAAATACT 58.615 45.455 9.01 0.00 42.21 2.12
2393 2507 3.840124 ACTTCCTCCATCCGGAAATAC 57.160 47.619 9.01 0.00 42.21 1.89
2394 2508 3.644738 GGTACTTCCTCCATCCGGAAATA 59.355 47.826 9.01 0.00 42.21 1.40
2395 2509 2.438392 GGTACTTCCTCCATCCGGAAAT 59.562 50.000 9.01 0.00 42.21 2.17
2396 2510 1.835531 GGTACTTCCTCCATCCGGAAA 59.164 52.381 9.01 0.00 42.21 3.13
2397 2511 1.007963 AGGTACTTCCTCCATCCGGAA 59.992 52.381 9.01 0.00 44.42 4.30
2398 2512 0.635009 AGGTACTTCCTCCATCCGGA 59.365 55.000 6.61 6.61 44.42 5.14
2399 2513 3.225608 AGGTACTTCCTCCATCCGG 57.774 57.895 0.00 0.00 44.42 5.14
2442 2556 0.801067 CTGCAACGCTCGTACCTACC 60.801 60.000 0.00 0.00 0.00 3.18
2542 2657 3.006967 CCCGCAGTGCTATAAATCCTACT 59.993 47.826 14.33 0.00 0.00 2.57
2557 2672 1.279271 AGCTTACATCTTTCCCGCAGT 59.721 47.619 0.00 0.00 0.00 4.40
2595 2710 7.915397 ACAACAAGAGCACACTTTGTTAATTAG 59.085 33.333 2.00 0.00 0.00 1.73
2806 2926 5.006261 GGGAACAATTGTCCGTTTTCTTTTG 59.994 40.000 12.39 0.00 0.00 2.44
2915 3035 7.451501 TCTGCATCAATCACTTCACAATTAA 57.548 32.000 0.00 0.00 0.00 1.40
2943 3063 5.168526 TGTAATTAGATTGTTGGCGATGC 57.831 39.130 0.00 0.00 0.00 3.91
3052 3172 3.316308 GGGCTGGTTCTAGCACATAAATG 59.684 47.826 10.07 0.00 46.34 2.32
3145 3273 5.278808 GCCGTGTAGTGATATGTCTTCCATA 60.279 44.000 0.00 0.00 40.27 2.74
3163 3291 0.596082 GCAACAGGTTTATGCCGTGT 59.404 50.000 0.00 0.00 34.03 4.49
3277 3420 3.255725 TCAACCACGTTATTTAGCTCCG 58.744 45.455 0.00 0.00 0.00 4.63
3395 3538 3.872603 TGCGGCCACACCAACTCT 61.873 61.111 2.24 0.00 39.03 3.24
3427 3570 3.491652 GGCACGGCGAAGAAGAGC 61.492 66.667 16.62 5.40 0.00 4.09
3458 3601 2.669434 TCCGTTTCTGTATTTAGCGCAC 59.331 45.455 11.47 0.00 0.00 5.34
3520 3669 2.089201 TCCATGCTTGCACTCATCAAG 58.911 47.619 0.00 0.00 42.72 3.02
3553 3708 6.851222 AAGAGATAACACACACAAACTCAG 57.149 37.500 0.00 0.00 0.00 3.35
3559 3714 7.075121 CGCAAATTAAGAGATAACACACACAA 58.925 34.615 0.00 0.00 0.00 3.33
3560 3715 6.203915 ACGCAAATTAAGAGATAACACACACA 59.796 34.615 0.00 0.00 0.00 3.72
3580 3738 2.729467 CGGTTCAGTTTTTCACACGCAA 60.729 45.455 0.00 0.00 0.00 4.85
3593 3751 2.665649 TCGTTGCATATCGGTTCAGT 57.334 45.000 0.00 0.00 0.00 3.41
3616 3774 6.505272 GTCAACATGTATGTAGTAGAGACCC 58.495 44.000 0.00 0.00 40.80 4.46
3620 3778 6.907748 CAGTCGTCAACATGTATGTAGTAGAG 59.092 42.308 0.00 0.00 40.80 2.43
3623 3781 5.163591 CCCAGTCGTCAACATGTATGTAGTA 60.164 44.000 0.00 0.00 40.80 1.82
3625 3783 4.112634 CCCAGTCGTCAACATGTATGTAG 58.887 47.826 0.00 0.03 40.80 2.74
3628 3786 3.245518 TCCCAGTCGTCAACATGTATG 57.754 47.619 0.00 0.00 0.00 2.39
3639 3797 1.338769 CCGGAAAGAAATCCCAGTCGT 60.339 52.381 0.00 0.00 36.00 4.34
3642 3800 1.073098 ACCCGGAAAGAAATCCCAGT 58.927 50.000 0.73 0.00 36.00 4.00
3655 3813 1.622607 CCAGGCAGACATAACCCGGA 61.623 60.000 0.73 0.00 0.00 5.14
3656 3814 1.153168 CCAGGCAGACATAACCCGG 60.153 63.158 0.00 0.00 0.00 5.73
3666 3824 3.072330 TCTGTTACAAATGACCAGGCAGA 59.928 43.478 0.00 0.00 0.00 4.26
3759 3928 3.918544 GCCTTAGAAATGGCGGCA 58.081 55.556 16.34 16.34 39.71 5.69
3811 3980 6.654793 AAAACTTTACTCGAGCAGATCATC 57.345 37.500 13.61 0.00 0.00 2.92
3947 4135 1.631071 TTGGTGGCTGACTGTGGACA 61.631 55.000 0.00 0.00 0.00 4.02
3953 4141 1.961277 GGTCGTTGGTGGCTGACTG 60.961 63.158 0.00 0.00 0.00 3.51
3956 4144 1.098712 GTTTGGTCGTTGGTGGCTGA 61.099 55.000 0.00 0.00 0.00 4.26
3959 4147 0.173708 TTTGTTTGGTCGTTGGTGGC 59.826 50.000 0.00 0.00 0.00 5.01
3981 4170 3.367607 GACATGCGTGTTTGCTTTGTAA 58.632 40.909 13.92 0.00 39.09 2.41
3993 4182 2.604914 GTGATCTGTTAGGACATGCGTG 59.395 50.000 3.82 3.82 34.72 5.34
3994 4183 2.735444 CGTGATCTGTTAGGACATGCGT 60.735 50.000 0.00 0.00 34.72 5.24
4039 4228 1.531602 GTTGGCCTTTGGAGGTGCT 60.532 57.895 3.32 0.00 45.44 4.40
4052 4241 1.527380 TTCGGTGGAAGTGGTTGGC 60.527 57.895 0.00 0.00 0.00 4.52
4058 4247 1.308998 AGCAAAGTTCGGTGGAAGTG 58.691 50.000 0.00 0.00 35.98 3.16
4067 4256 0.718220 GCGTCGACAAGCAAAGTTCG 60.718 55.000 17.16 0.00 0.00 3.95
4092 4282 0.830648 CTCTTAGGCATTCGGGGTGA 59.169 55.000 0.00 0.00 0.00 4.02
4097 4288 2.555199 CACCTTCTCTTAGGCATTCGG 58.445 52.381 0.00 0.00 38.99 4.30
4098 4289 2.555199 CCACCTTCTCTTAGGCATTCG 58.445 52.381 0.00 0.00 38.99 3.34
4112 4303 0.681175 GCCATTTCACTTGCCACCTT 59.319 50.000 0.00 0.00 0.00 3.50
4124 4315 3.614092 TCTGATCAAGTCCTGCCATTTC 58.386 45.455 0.00 0.00 0.00 2.17
4297 4488 3.643978 GCATGATGGCGGCGTCTC 61.644 66.667 28.73 14.65 0.00 3.36
4379 4573 4.063967 TCGCCGAGGTGCATTCGT 62.064 61.111 18.33 0.00 36.37 3.85
4409 4603 1.990060 CTCGTGGGTGTCATCCCCT 60.990 63.158 0.00 0.00 46.48 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.