Multiple sequence alignment - TraesCS6B01G287000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G287000 chr6B 100.000 2711 0 0 1 2711 517751006 517753716 0.000000e+00 5007.0
1 TraesCS6B01G287000 chr6D 93.769 1300 48 12 829 2112 343134217 343135499 0.000000e+00 1921.0
2 TraesCS6B01G287000 chr6D 89.085 568 47 9 2 562 343132833 343133392 0.000000e+00 691.0
3 TraesCS6B01G287000 chr6D 87.748 302 36 1 2109 2409 343135611 343135912 4.290000e-93 351.0
4 TraesCS6B01G287000 chr6D 93.617 235 11 4 597 829 343133949 343134181 5.560000e-92 348.0
5 TraesCS6B01G287000 chr6A 87.130 1251 96 31 1175 2405 483593671 483594876 0.000000e+00 1358.0
6 TraesCS6B01G287000 chr6A 86.636 434 43 10 2 429 483588403 483588827 1.470000e-127 466.0
7 TraesCS6B01G287000 chr6A 89.922 258 20 4 829 1084 483593421 483593674 7.240000e-86 327.0
8 TraesCS6B01G287000 chr6A 90.213 235 18 5 597 829 483591956 483592187 4.390000e-78 302.0
9 TraesCS6B01G287000 chr6A 88.482 191 20 2 362 550 483591071 483591261 2.100000e-56 230.0
10 TraesCS6B01G287000 chr6A 82.305 243 41 2 2167 2409 87480921 87480681 2.740000e-50 209.0
11 TraesCS6B01G287000 chr7D 92.715 302 22 0 2410 2711 139812481 139812180 1.150000e-118 436.0
12 TraesCS6B01G287000 chr7D 75.336 223 38 7 2167 2374 72118482 72118702 1.030000e-14 91.6
13 TraesCS6B01G287000 chr2D 92.409 303 21 1 2409 2711 297527679 297527379 5.360000e-117 431.0
14 TraesCS6B01G287000 chr2D 92.384 302 23 0 2410 2711 350335505 350335204 5.360000e-117 431.0
15 TraesCS6B01G287000 chr2D 86.310 168 20 3 2208 2373 120369160 120369326 2.140000e-41 180.0
16 TraesCS6B01G287000 chr3D 92.384 302 22 1 2410 2711 475187777 475188077 1.930000e-116 429.0
17 TraesCS6B01G287000 chr3D 92.079 303 24 0 2409 2711 305495039 305494737 6.940000e-116 427.0
18 TraesCS6B01G287000 chr3D 79.147 211 38 6 2167 2374 504493707 504493914 1.010000e-29 141.0
19 TraesCS6B01G287000 chr1D 92.105 304 24 0 2408 2711 307377887 307377584 1.930000e-116 429.0
20 TraesCS6B01G287000 chr1D 92.079 303 24 0 2409 2711 12678821 12679123 6.940000e-116 427.0
21 TraesCS6B01G287000 chr4D 92.079 303 24 0 2409 2711 453243300 453242998 6.940000e-116 427.0
22 TraesCS6B01G287000 chr5D 91.290 310 27 0 2402 2711 249407174 249407483 8.970000e-115 424.0
23 TraesCS6B01G287000 chr5D 96.875 32 0 1 1421 1451 356901570 356901601 5.000000e-03 52.8
24 TraesCS6B01G287000 chr1A 81.707 246 42 2 2166 2409 568128328 568128572 4.580000e-48 202.0
25 TraesCS6B01G287000 chr1A 81.250 240 43 1 2166 2405 585429963 585429726 2.750000e-45 193.0
26 TraesCS6B01G287000 chr2B 84.270 178 27 1 2205 2381 54522852 54523029 3.590000e-39 172.0
27 TraesCS6B01G287000 chr7B 80.889 225 28 3 2167 2377 364938276 364938499 2.160000e-36 163.0
28 TraesCS6B01G287000 chr7B 77.273 220 33 8 2167 2370 700613312 700613530 2.210000e-21 113.0
29 TraesCS6B01G287000 chr4B 94.595 37 2 0 1143 1179 14768135 14768099 1.050000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G287000 chr6B 517751006 517753716 2710 False 5007.00 5007 100.00000 1 2711 1 chr6B.!!$F1 2710
1 TraesCS6B01G287000 chr6D 343132833 343135912 3079 False 827.75 1921 91.05475 2 2409 4 chr6D.!!$F1 2407
2 TraesCS6B01G287000 chr6A 483588403 483594876 6473 False 536.60 1358 88.47660 2 2405 5 chr6A.!!$F1 2403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
629 3616 0.037697 AGTTGCTACCGATGAACGCA 60.038 50.0 0.0 0.0 41.07 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2465 6837 0.034896 TTCTGCTCCTCGTTGGGTTC 59.965 55.0 0.0 0.0 36.2 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.368203 TCCTCCATTCTCCACCCCTAA 59.632 52.381 0.00 0.00 0.00 2.69
46 47 2.841881 CCACCCCTAAGCCTGTAAGTTA 59.158 50.000 0.00 0.00 0.00 2.24
49 50 4.163458 CACCCCTAAGCCTGTAAGTTATGA 59.837 45.833 0.00 0.00 0.00 2.15
53 54 6.409234 CCCCTAAGCCTGTAAGTTATGATTCA 60.409 42.308 0.00 0.00 0.00 2.57
70 71 3.720601 AGAGCCAGGGATTGCGCA 61.721 61.111 5.66 5.66 0.00 6.09
81 84 1.300971 GATTGCGCAAGGTGCTGAGA 61.301 55.000 28.62 0.45 42.25 3.27
93 96 4.383861 CTGAGAGTGGCCAGCGCA 62.384 66.667 5.11 8.90 36.38 6.09
162 165 4.008074 GCTACCTGAAGCTGCCATAATA 57.992 45.455 0.00 0.00 39.50 0.98
178 181 6.609212 TGCCATAATATTTTACCAGGCTTTGA 59.391 34.615 13.24 0.00 35.61 2.69
179 182 6.923508 GCCATAATATTTTACCAGGCTTTGAC 59.076 38.462 0.00 0.00 33.54 3.18
194 197 1.383523 TTGACGCACATGGTTTCACA 58.616 45.000 0.00 0.00 0.00 3.58
195 198 1.383523 TGACGCACATGGTTTCACAA 58.616 45.000 0.00 0.00 0.00 3.33
367 376 3.888930 GACCCCAAATTGTTCAACTCAGA 59.111 43.478 0.00 0.00 0.00 3.27
377 386 9.683069 AAATTGTTCAACTCAGAATTCATGTAC 57.317 29.630 8.44 3.76 0.00 2.90
394 403 9.825972 ATTCATGTACTTTTAGAAATGTTCACG 57.174 29.630 0.00 0.00 30.40 4.35
408 2728 4.285807 TGTTCACGTGTGAGAAAAATGG 57.714 40.909 16.51 0.00 41.13 3.16
458 2778 7.684062 AATTTCGTGTGTTCAATCTTTTCTG 57.316 32.000 0.00 0.00 0.00 3.02
617 3604 7.659799 TGCAAGAACACTAGAATAAAGTTGCTA 59.340 33.333 0.00 0.00 30.60 3.49
624 3611 6.978659 CACTAGAATAAAGTTGCTACCGATGA 59.021 38.462 0.00 0.00 0.00 2.92
626 3613 6.663944 AGAATAAAGTTGCTACCGATGAAC 57.336 37.500 0.00 0.00 0.00 3.18
627 3614 5.291128 AGAATAAAGTTGCTACCGATGAACG 59.709 40.000 0.00 0.00 42.18 3.95
628 3615 1.076332 AAGTTGCTACCGATGAACGC 58.924 50.000 0.00 0.00 41.07 4.84
629 3616 0.037697 AGTTGCTACCGATGAACGCA 60.038 50.000 0.00 0.00 41.07 5.24
630 3617 1.006832 GTTGCTACCGATGAACGCAT 58.993 50.000 0.00 0.00 41.07 4.73
651 3638 7.228906 ACGCATTGAGTATTTAGCTAGTCTCTA 59.771 37.037 13.50 9.08 0.00 2.43
688 3675 1.729586 AAGAGGCAAGTCACACCCTA 58.270 50.000 0.00 0.00 0.00 3.53
771 3758 2.386661 ACATGATTCCTGTCCGACAC 57.613 50.000 0.00 0.00 0.00 3.67
845 5066 1.083209 CGCATCGATGACAATGCCG 60.083 57.895 29.20 16.18 44.27 5.69
899 5120 4.309933 TCATGTCGAGTTGATATGATGCC 58.690 43.478 14.15 0.00 46.48 4.40
1000 5221 0.250945 TACATTGCCGGCTGTTGGAA 60.251 50.000 29.70 13.02 0.00 3.53
1011 5232 1.469251 GCTGTTGGAATGAGCATGCTG 60.469 52.381 28.27 7.51 32.70 4.41
1046 5267 2.125753 GAGGAGCACTGCCTCGTG 60.126 66.667 0.00 0.00 42.22 4.35
1080 5304 6.258507 TGTCCGTAAGTAAAAAGGAAACAGAC 59.741 38.462 0.00 0.00 32.20 3.51
1143 5367 6.324042 TGCATCTAAACGTATTAGTTGACGA 58.676 36.000 20.55 9.47 41.60 4.20
1144 5368 6.471198 TGCATCTAAACGTATTAGTTGACGAG 59.529 38.462 20.55 0.00 41.60 4.18
1162 5399 3.119101 ACGAGCGTCAACTAATTCCAGAT 60.119 43.478 0.00 0.00 0.00 2.90
1178 5415 4.483950 TCCAGATGGAGGGAGTATTACTG 58.516 47.826 0.00 0.00 39.78 2.74
1274 5515 3.460712 TGGAGATGAATGTCCACATGGAT 59.539 43.478 3.41 0.00 44.34 3.41
1298 5539 0.463620 AGGGCTGCGAGAAGAGAATC 59.536 55.000 0.00 0.00 0.00 2.52
1350 5594 7.923344 GCACGTATTATATATCCTCATTCAGCT 59.077 37.037 0.00 0.00 0.00 4.24
1457 5711 2.506438 GTACGTGGAGCGGCTGAC 60.506 66.667 7.50 2.63 46.52 3.51
1680 5934 3.368040 CTCGCGCTCTTCAACGAG 58.632 61.111 5.56 0.00 45.02 4.18
1712 5966 1.308069 GCCTGCACCGTCATGTGATT 61.308 55.000 0.00 0.00 38.55 2.57
1725 5979 3.781965 TCATGTGATTCTCCATTCCTCCA 59.218 43.478 0.00 0.00 0.00 3.86
1738 5992 7.950124 TCTCCATTCCTCCAAAAGAAATTTACT 59.050 33.333 0.00 0.00 0.00 2.24
1739 5993 8.491045 TCCATTCCTCCAAAAGAAATTTACTT 57.509 30.769 0.00 0.00 0.00 2.24
1777 6033 9.843334 ATTAATATAGGACGAAGATCGAAGAAC 57.157 33.333 6.78 0.00 43.74 3.01
1778 6034 2.546195 AGGACGAAGATCGAAGAACG 57.454 50.000 6.78 0.00 43.74 3.95
1803 6059 5.864474 CACGTCAAGTGTTTCTAGCTAATCT 59.136 40.000 0.00 0.00 45.51 2.40
1804 6060 7.027760 CACGTCAAGTGTTTCTAGCTAATCTA 58.972 38.462 0.00 0.00 45.51 1.98
1805 6061 7.702772 CACGTCAAGTGTTTCTAGCTAATCTAT 59.297 37.037 0.00 0.00 45.51 1.98
1806 6062 7.916450 ACGTCAAGTGTTTCTAGCTAATCTATC 59.084 37.037 0.00 0.00 0.00 2.08
1923 6180 4.891277 AAAAATGCTGCGAAAAATCGAG 57.109 36.364 1.91 0.00 34.64 4.04
1943 6200 3.362706 AGTTATTCGAGGCTAGTGGACA 58.637 45.455 0.00 0.00 0.00 4.02
2144 6515 2.670479 CGTAGAGGCAGATGCATACAG 58.330 52.381 0.00 0.00 44.36 2.74
2201 6572 1.296715 CTGACCCTCAAACCTCCCG 59.703 63.158 0.00 0.00 0.00 5.14
2209 6580 2.281276 AAACCTCCCGCAACCGTC 60.281 61.111 0.00 0.00 0.00 4.79
2210 6581 2.814835 AAACCTCCCGCAACCGTCT 61.815 57.895 0.00 0.00 0.00 4.18
2217 6588 2.604174 CCGCAACCGTCTGAACCAC 61.604 63.158 0.00 0.00 0.00 4.16
2235 6606 2.387445 CGAAAGCCATCCAACGCGA 61.387 57.895 15.93 0.00 0.00 5.87
2251 6622 4.968197 GATCCTGTATCGGTCCGC 57.032 61.111 6.34 0.00 0.00 5.54
2257 6628 2.649975 GTATCGGTCCGCGACACG 60.650 66.667 8.23 9.00 43.15 4.49
2276 6647 1.372623 GTCCGGACGCGTTTTCTCT 60.373 57.895 20.85 0.00 0.00 3.10
2277 6648 0.109597 GTCCGGACGCGTTTTCTCTA 60.110 55.000 20.85 0.00 0.00 2.43
2298 6669 1.858399 GCAAACCGAAGACAAACGTGG 60.858 52.381 0.00 0.00 0.00 4.94
2304 6675 0.395312 GAAGACAAACGTGGGGGAGA 59.605 55.000 0.00 0.00 0.00 3.71
2316 6687 1.342672 GGGGGAGATTTGCGGGAGTA 61.343 60.000 0.00 0.00 0.00 2.59
2342 6713 3.350031 ATCCCAAGCCCGCTTCTGG 62.350 63.158 0.00 3.75 33.42 3.86
2374 6746 1.308738 ACCAAAAACCCCTCCCCCTT 61.309 55.000 0.00 0.00 0.00 3.95
2386 6758 3.666253 CCCCTTCCGCGCGTTTTT 61.666 61.111 29.95 0.00 0.00 1.94
2392 6764 1.989966 TTCCGCGCGTTTTTGGTCAA 61.990 50.000 29.95 3.84 0.00 3.18
2394 6766 1.298041 CGCGCGTTTTTGGTCAACT 60.298 52.632 24.19 0.00 0.00 3.16
2405 6777 1.118965 TGGTCAACTCCGCTCCAGAA 61.119 55.000 0.00 0.00 0.00 3.02
2409 6781 0.600255 CAACTCCGCTCCAGAACGTT 60.600 55.000 0.00 0.00 0.00 3.99
2410 6782 0.600255 AACTCCGCTCCAGAACGTTG 60.600 55.000 5.00 0.00 0.00 4.10
2411 6783 1.289066 CTCCGCTCCAGAACGTTGA 59.711 57.895 5.00 0.00 0.00 3.18
2412 6784 0.108615 CTCCGCTCCAGAACGTTGAT 60.109 55.000 5.00 0.00 0.00 2.57
2413 6785 0.389817 TCCGCTCCAGAACGTTGATG 60.390 55.000 5.00 4.12 0.00 3.07
2414 6786 0.389817 CCGCTCCAGAACGTTGATGA 60.390 55.000 5.00 0.00 0.00 2.92
2415 6787 0.716108 CGCTCCAGAACGTTGATGAC 59.284 55.000 5.00 0.00 0.00 3.06
2416 6788 1.079503 GCTCCAGAACGTTGATGACC 58.920 55.000 5.00 0.00 0.00 4.02
2417 6789 1.726853 CTCCAGAACGTTGATGACCC 58.273 55.000 5.00 0.00 0.00 4.46
2418 6790 1.001974 CTCCAGAACGTTGATGACCCA 59.998 52.381 5.00 0.00 0.00 4.51
2419 6791 1.156736 CCAGAACGTTGATGACCCAC 58.843 55.000 5.00 0.00 0.00 4.61
2420 6792 1.542328 CCAGAACGTTGATGACCCACA 60.542 52.381 5.00 0.00 0.00 4.17
2421 6793 2.217750 CAGAACGTTGATGACCCACAA 58.782 47.619 5.00 0.00 0.00 3.33
2422 6794 2.224079 CAGAACGTTGATGACCCACAAG 59.776 50.000 5.00 0.00 0.00 3.16
2423 6795 2.158813 AGAACGTTGATGACCCACAAGT 60.159 45.455 5.00 0.00 0.00 3.16
2424 6796 3.070446 AGAACGTTGATGACCCACAAGTA 59.930 43.478 5.00 0.00 0.00 2.24
2425 6797 3.695830 ACGTTGATGACCCACAAGTAT 57.304 42.857 0.00 0.00 0.00 2.12
2426 6798 4.811969 ACGTTGATGACCCACAAGTATA 57.188 40.909 0.00 0.00 0.00 1.47
2427 6799 4.755411 ACGTTGATGACCCACAAGTATAG 58.245 43.478 0.00 0.00 0.00 1.31
2428 6800 4.119862 CGTTGATGACCCACAAGTATAGG 58.880 47.826 0.00 0.00 0.00 2.57
2430 6802 4.002256 TGATGACCCACAAGTATAGGGA 57.998 45.455 3.32 0.00 45.80 4.20
2431 6803 4.367166 TGATGACCCACAAGTATAGGGAA 58.633 43.478 3.32 0.00 45.80 3.97
2432 6804 4.975147 TGATGACCCACAAGTATAGGGAAT 59.025 41.667 3.32 0.00 45.80 3.01
2433 6805 5.071788 TGATGACCCACAAGTATAGGGAATC 59.928 44.000 3.32 6.91 45.80 2.52
2434 6806 4.631234 TGACCCACAAGTATAGGGAATCT 58.369 43.478 3.32 0.00 45.80 2.40
2435 6807 5.784023 TGACCCACAAGTATAGGGAATCTA 58.216 41.667 3.32 0.00 45.80 1.98
2436 6808 6.390504 TGACCCACAAGTATAGGGAATCTAT 58.609 40.000 3.32 0.00 45.80 1.98
2437 6809 6.497259 TGACCCACAAGTATAGGGAATCTATC 59.503 42.308 3.32 0.00 45.80 2.08
2438 6810 5.480772 ACCCACAAGTATAGGGAATCTATCG 59.519 44.000 3.32 0.00 45.80 2.92
2439 6811 5.480772 CCCACAAGTATAGGGAATCTATCGT 59.519 44.000 0.00 0.00 45.80 3.73
2440 6812 6.662234 CCCACAAGTATAGGGAATCTATCGTA 59.338 42.308 0.00 0.00 45.80 3.43
2441 6813 7.362747 CCCACAAGTATAGGGAATCTATCGTAC 60.363 44.444 0.00 0.00 45.80 3.67
2442 6814 7.393796 CCACAAGTATAGGGAATCTATCGTACT 59.606 40.741 0.00 0.00 39.30 2.73
2443 6815 8.452534 CACAAGTATAGGGAATCTATCGTACTC 58.547 40.741 0.00 0.00 39.30 2.59
2444 6816 7.611079 ACAAGTATAGGGAATCTATCGTACTCC 59.389 40.741 0.00 0.00 39.30 3.85
2445 6817 7.513560 AGTATAGGGAATCTATCGTACTCCT 57.486 40.000 0.00 0.00 39.30 3.69
2446 6818 7.931046 AGTATAGGGAATCTATCGTACTCCTT 58.069 38.462 0.00 0.00 39.30 3.36
2447 6819 8.392479 AGTATAGGGAATCTATCGTACTCCTTT 58.608 37.037 0.00 0.00 39.30 3.11
2448 6820 7.706100 ATAGGGAATCTATCGTACTCCTTTC 57.294 40.000 0.00 0.00 33.60 2.62
2449 6821 4.519730 AGGGAATCTATCGTACTCCTTTCG 59.480 45.833 0.00 0.00 0.00 3.46
2450 6822 4.518211 GGGAATCTATCGTACTCCTTTCGA 59.482 45.833 0.00 0.00 37.96 3.71
2451 6823 5.183522 GGGAATCTATCGTACTCCTTTCGAT 59.816 44.000 0.00 0.00 44.53 3.59
2452 6824 6.373774 GGGAATCTATCGTACTCCTTTCGATA 59.626 42.308 0.00 0.00 42.78 2.92
2453 6825 7.094463 GGGAATCTATCGTACTCCTTTCGATAA 60.094 40.741 7.65 1.63 42.90 1.75
2454 6826 7.964011 GGAATCTATCGTACTCCTTTCGATAAG 59.036 40.741 7.65 0.00 42.90 1.73
2455 6827 7.982761 ATCTATCGTACTCCTTTCGATAAGT 57.017 36.000 7.65 0.00 42.90 2.24
2456 6828 9.499479 AATCTATCGTACTCCTTTCGATAAGTA 57.501 33.333 7.65 0.00 42.90 2.24
2457 6829 8.893219 TCTATCGTACTCCTTTCGATAAGTAA 57.107 34.615 7.65 0.00 42.90 2.24
2458 6830 9.499479 TCTATCGTACTCCTTTCGATAAGTAAT 57.501 33.333 7.65 0.00 42.90 1.89
2461 6833 8.668510 TCGTACTCCTTTCGATAAGTAATAGT 57.331 34.615 0.00 0.00 0.00 2.12
2462 6834 8.554528 TCGTACTCCTTTCGATAAGTAATAGTG 58.445 37.037 0.00 0.00 0.00 2.74
2463 6835 8.341173 CGTACTCCTTTCGATAAGTAATAGTGT 58.659 37.037 0.00 0.00 0.00 3.55
2464 6836 9.662545 GTACTCCTTTCGATAAGTAATAGTGTC 57.337 37.037 0.00 0.00 0.00 3.67
2465 6837 7.416022 ACTCCTTTCGATAAGTAATAGTGTCG 58.584 38.462 0.00 0.00 0.00 4.35
2466 6838 7.281774 ACTCCTTTCGATAAGTAATAGTGTCGA 59.718 37.037 0.00 2.92 36.46 4.20
2467 6839 7.988737 TCCTTTCGATAAGTAATAGTGTCGAA 58.011 34.615 11.84 11.84 43.60 3.71
2468 6840 7.912250 TCCTTTCGATAAGTAATAGTGTCGAAC 59.088 37.037 14.15 0.00 44.53 3.95
2469 6841 7.167136 CCTTTCGATAAGTAATAGTGTCGAACC 59.833 40.741 14.15 0.00 44.53 3.62
2470 6842 6.064846 TCGATAAGTAATAGTGTCGAACCC 57.935 41.667 0.00 0.00 35.48 4.11
2471 6843 5.589855 TCGATAAGTAATAGTGTCGAACCCA 59.410 40.000 0.00 0.00 35.48 4.51
2472 6844 6.095300 TCGATAAGTAATAGTGTCGAACCCAA 59.905 38.462 0.00 0.00 35.48 4.12
2473 6845 6.197842 CGATAAGTAATAGTGTCGAACCCAAC 59.802 42.308 0.00 0.00 0.00 3.77
2474 6846 3.841643 AGTAATAGTGTCGAACCCAACG 58.158 45.455 0.00 0.00 0.00 4.10
2475 6847 3.507233 AGTAATAGTGTCGAACCCAACGA 59.493 43.478 0.00 0.00 37.43 3.85
2476 6848 2.649331 ATAGTGTCGAACCCAACGAG 57.351 50.000 0.00 0.00 40.37 4.18
2477 6849 0.599558 TAGTGTCGAACCCAACGAGG 59.400 55.000 0.00 0.00 40.37 4.63
2478 6850 1.111116 AGTGTCGAACCCAACGAGGA 61.111 55.000 0.00 0.00 41.22 3.71
2479 6851 0.666577 GTGTCGAACCCAACGAGGAG 60.667 60.000 0.00 0.00 41.22 3.69
2480 6852 1.737008 GTCGAACCCAACGAGGAGC 60.737 63.158 0.00 0.00 41.22 4.70
2481 6853 2.204461 TCGAACCCAACGAGGAGCA 61.204 57.895 0.00 0.00 41.22 4.26
2482 6854 1.738099 CGAACCCAACGAGGAGCAG 60.738 63.158 0.00 0.00 41.22 4.24
2483 6855 1.671742 GAACCCAACGAGGAGCAGA 59.328 57.895 0.00 0.00 41.22 4.26
2484 6856 0.034896 GAACCCAACGAGGAGCAGAA 59.965 55.000 0.00 0.00 41.22 3.02
2485 6857 0.035458 AACCCAACGAGGAGCAGAAG 59.965 55.000 0.00 0.00 41.22 2.85
2486 6858 0.832135 ACCCAACGAGGAGCAGAAGA 60.832 55.000 0.00 0.00 41.22 2.87
2487 6859 0.321671 CCCAACGAGGAGCAGAAGAA 59.678 55.000 0.00 0.00 41.22 2.52
2488 6860 1.270839 CCCAACGAGGAGCAGAAGAAA 60.271 52.381 0.00 0.00 41.22 2.52
2489 6861 2.494059 CCAACGAGGAGCAGAAGAAAA 58.506 47.619 0.00 0.00 41.22 2.29
2490 6862 3.077359 CCAACGAGGAGCAGAAGAAAAT 58.923 45.455 0.00 0.00 41.22 1.82
2491 6863 3.120060 CCAACGAGGAGCAGAAGAAAATG 60.120 47.826 0.00 0.00 41.22 2.32
2492 6864 3.685139 ACGAGGAGCAGAAGAAAATGA 57.315 42.857 0.00 0.00 0.00 2.57
2493 6865 3.330267 ACGAGGAGCAGAAGAAAATGAC 58.670 45.455 0.00 0.00 0.00 3.06
2494 6866 3.244215 ACGAGGAGCAGAAGAAAATGACA 60.244 43.478 0.00 0.00 0.00 3.58
2495 6867 3.748048 CGAGGAGCAGAAGAAAATGACAA 59.252 43.478 0.00 0.00 0.00 3.18
2496 6868 4.142945 CGAGGAGCAGAAGAAAATGACAAG 60.143 45.833 0.00 0.00 0.00 3.16
2497 6869 3.505293 AGGAGCAGAAGAAAATGACAAGC 59.495 43.478 0.00 0.00 0.00 4.01
2498 6870 3.486584 GAGCAGAAGAAAATGACAAGCG 58.513 45.455 0.00 0.00 0.00 4.68
2499 6871 2.227388 AGCAGAAGAAAATGACAAGCGG 59.773 45.455 0.00 0.00 0.00 5.52
2500 6872 2.030805 GCAGAAGAAAATGACAAGCGGT 60.031 45.455 0.00 0.00 0.00 5.68
2501 6873 3.550842 GCAGAAGAAAATGACAAGCGGTT 60.551 43.478 0.00 0.00 0.00 4.44
2502 6874 4.610945 CAGAAGAAAATGACAAGCGGTTT 58.389 39.130 0.00 0.00 0.00 3.27
2503 6875 5.043248 CAGAAGAAAATGACAAGCGGTTTT 58.957 37.500 0.00 0.00 0.00 2.43
2504 6876 5.173854 CAGAAGAAAATGACAAGCGGTTTTC 59.826 40.000 6.56 6.56 39.58 2.29
2505 6877 4.647424 AGAAAATGACAAGCGGTTTTCA 57.353 36.364 17.51 17.51 40.95 2.69
2506 6878 4.610945 AGAAAATGACAAGCGGTTTTCAG 58.389 39.130 19.55 1.85 40.95 3.02
2507 6879 3.369546 AAATGACAAGCGGTTTTCAGG 57.630 42.857 19.55 1.49 0.00 3.86
2508 6880 2.270352 ATGACAAGCGGTTTTCAGGA 57.730 45.000 19.55 0.00 0.00 3.86
2509 6881 2.045561 TGACAAGCGGTTTTCAGGAA 57.954 45.000 11.88 0.00 0.00 3.36
2510 6882 1.946768 TGACAAGCGGTTTTCAGGAAG 59.053 47.619 11.88 0.00 0.00 3.46
2511 6883 1.266989 GACAAGCGGTTTTCAGGAAGG 59.733 52.381 8.55 0.00 0.00 3.46
2512 6884 1.318576 CAAGCGGTTTTCAGGAAGGT 58.681 50.000 0.00 0.00 0.00 3.50
2513 6885 2.158726 ACAAGCGGTTTTCAGGAAGGTA 60.159 45.455 0.00 0.00 0.00 3.08
2514 6886 3.081804 CAAGCGGTTTTCAGGAAGGTAT 58.918 45.455 0.00 0.00 0.00 2.73
2515 6887 3.434940 AGCGGTTTTCAGGAAGGTATT 57.565 42.857 0.00 0.00 0.00 1.89
2516 6888 4.563140 AGCGGTTTTCAGGAAGGTATTA 57.437 40.909 0.00 0.00 0.00 0.98
2517 6889 5.112129 AGCGGTTTTCAGGAAGGTATTAT 57.888 39.130 0.00 0.00 0.00 1.28
2518 6890 5.123936 AGCGGTTTTCAGGAAGGTATTATC 58.876 41.667 0.00 0.00 0.00 1.75
2519 6891 5.104485 AGCGGTTTTCAGGAAGGTATTATCT 60.104 40.000 0.00 0.00 0.00 1.98
2520 6892 5.007724 GCGGTTTTCAGGAAGGTATTATCTG 59.992 44.000 0.00 0.00 0.00 2.90
2521 6893 5.007724 CGGTTTTCAGGAAGGTATTATCTGC 59.992 44.000 0.00 0.00 0.00 4.26
2522 6894 5.885912 GGTTTTCAGGAAGGTATTATCTGCA 59.114 40.000 0.00 0.00 0.00 4.41
2523 6895 6.377146 GGTTTTCAGGAAGGTATTATCTGCAA 59.623 38.462 0.00 0.00 0.00 4.08
2524 6896 7.415653 GGTTTTCAGGAAGGTATTATCTGCAAG 60.416 40.741 0.00 0.00 0.00 4.01
2525 6897 4.708177 TCAGGAAGGTATTATCTGCAAGC 58.292 43.478 0.00 0.00 0.00 4.01
2526 6898 4.164030 TCAGGAAGGTATTATCTGCAAGCA 59.836 41.667 0.00 0.00 0.00 3.91
2527 6899 4.274459 CAGGAAGGTATTATCTGCAAGCAC 59.726 45.833 0.00 0.00 0.00 4.40
2528 6900 4.164988 AGGAAGGTATTATCTGCAAGCACT 59.835 41.667 0.00 0.00 0.00 4.40
2529 6901 4.274459 GGAAGGTATTATCTGCAAGCACTG 59.726 45.833 0.00 0.00 0.00 3.66
2530 6902 4.760530 AGGTATTATCTGCAAGCACTGA 57.239 40.909 0.00 0.00 0.00 3.41
2531 6903 5.102953 AGGTATTATCTGCAAGCACTGAA 57.897 39.130 0.00 0.00 0.00 3.02
2532 6904 5.500234 AGGTATTATCTGCAAGCACTGAAA 58.500 37.500 0.00 0.00 0.00 2.69
2533 6905 6.125029 AGGTATTATCTGCAAGCACTGAAAT 58.875 36.000 0.00 0.00 0.00 2.17
2534 6906 6.604795 AGGTATTATCTGCAAGCACTGAAATT 59.395 34.615 0.00 0.00 0.00 1.82
2535 6907 7.775093 AGGTATTATCTGCAAGCACTGAAATTA 59.225 33.333 0.00 0.00 0.00 1.40
2536 6908 8.571336 GGTATTATCTGCAAGCACTGAAATTAT 58.429 33.333 0.00 0.00 0.00 1.28
2537 6909 9.956720 GTATTATCTGCAAGCACTGAAATTATT 57.043 29.630 0.00 0.00 0.00 1.40
2538 6910 8.867112 ATTATCTGCAAGCACTGAAATTATTG 57.133 30.769 0.00 0.00 0.00 1.90
2539 6911 5.063180 TCTGCAAGCACTGAAATTATTGG 57.937 39.130 0.00 0.00 0.00 3.16
2540 6912 4.523943 TCTGCAAGCACTGAAATTATTGGT 59.476 37.500 0.00 0.00 0.00 3.67
2541 6913 5.709631 TCTGCAAGCACTGAAATTATTGGTA 59.290 36.000 0.00 0.00 0.00 3.25
2542 6914 6.208402 TCTGCAAGCACTGAAATTATTGGTAA 59.792 34.615 0.00 0.00 0.00 2.85
2543 6915 6.155827 TGCAAGCACTGAAATTATTGGTAAC 58.844 36.000 0.00 0.00 0.00 2.50
2575 6947 9.417284 GTTTTGTGATAAGATAATTCGTAACGG 57.583 33.333 0.00 0.00 0.00 4.44
2576 6948 7.703298 TTGTGATAAGATAATTCGTAACGGG 57.297 36.000 0.00 0.00 0.00 5.28
2577 6949 6.808829 TGTGATAAGATAATTCGTAACGGGT 58.191 36.000 0.00 0.00 0.00 5.28
2578 6950 7.939782 TGTGATAAGATAATTCGTAACGGGTA 58.060 34.615 0.00 0.00 0.00 3.69
2579 6951 8.412456 TGTGATAAGATAATTCGTAACGGGTAA 58.588 33.333 0.00 0.00 0.00 2.85
2580 6952 8.694394 GTGATAAGATAATTCGTAACGGGTAAC 58.306 37.037 0.00 0.00 0.00 2.50
2581 6953 8.412456 TGATAAGATAATTCGTAACGGGTAACA 58.588 33.333 0.00 0.00 39.74 2.41
2582 6954 9.248291 GATAAGATAATTCGTAACGGGTAACAA 57.752 33.333 0.00 0.00 39.74 2.83
2583 6955 7.529880 AAGATAATTCGTAACGGGTAACAAG 57.470 36.000 0.00 0.00 39.74 3.16
2584 6956 6.633856 AGATAATTCGTAACGGGTAACAAGT 58.366 36.000 0.00 0.00 39.74 3.16
2585 6957 7.771183 AGATAATTCGTAACGGGTAACAAGTA 58.229 34.615 0.00 0.00 39.74 2.24
2586 6958 8.250332 AGATAATTCGTAACGGGTAACAAGTAA 58.750 33.333 0.00 0.00 39.74 2.24
2587 6959 6.466308 AATTCGTAACGGGTAACAAGTAAC 57.534 37.500 0.00 0.00 39.74 2.50
2588 6960 4.576216 TCGTAACGGGTAACAAGTAACA 57.424 40.909 0.00 0.00 39.74 2.41
2589 6961 4.938080 TCGTAACGGGTAACAAGTAACAA 58.062 39.130 0.00 0.00 39.74 2.83
2590 6962 5.352284 TCGTAACGGGTAACAAGTAACAAA 58.648 37.500 0.00 0.00 39.74 2.83
2591 6963 5.812642 TCGTAACGGGTAACAAGTAACAAAA 59.187 36.000 0.00 0.00 39.74 2.44
2592 6964 6.313905 TCGTAACGGGTAACAAGTAACAAAAA 59.686 34.615 0.00 0.00 39.74 1.94
2593 6965 7.011857 TCGTAACGGGTAACAAGTAACAAAAAT 59.988 33.333 0.00 0.00 39.74 1.82
2594 6966 8.279103 CGTAACGGGTAACAAGTAACAAAAATA 58.721 33.333 0.00 0.00 39.74 1.40
2595 6967 9.943163 GTAACGGGTAACAAGTAACAAAAATAA 57.057 29.630 0.00 0.00 39.74 1.40
2596 6968 8.854979 AACGGGTAACAAGTAACAAAAATAAC 57.145 30.769 0.00 0.00 39.74 1.89
2597 6969 8.224389 ACGGGTAACAAGTAACAAAAATAACT 57.776 30.769 0.00 0.00 39.74 2.24
2598 6970 9.336171 ACGGGTAACAAGTAACAAAAATAACTA 57.664 29.630 0.00 0.00 39.74 2.24
2604 6976 9.524106 AACAAGTAACAAAAATAACTAAGGTGC 57.476 29.630 0.00 0.00 0.00 5.01
2605 6977 8.688151 ACAAGTAACAAAAATAACTAAGGTGCA 58.312 29.630 0.00 0.00 0.00 4.57
2606 6978 9.180678 CAAGTAACAAAAATAACTAAGGTGCAG 57.819 33.333 0.00 0.00 0.00 4.41
2607 6979 7.368059 AGTAACAAAAATAACTAAGGTGCAGC 58.632 34.615 8.11 8.11 0.00 5.25
2608 6980 5.782893 ACAAAAATAACTAAGGTGCAGCA 57.217 34.783 19.63 0.00 0.00 4.41
2609 6981 6.155475 ACAAAAATAACTAAGGTGCAGCAA 57.845 33.333 19.63 4.66 0.00 3.91
2610 6982 6.215845 ACAAAAATAACTAAGGTGCAGCAAG 58.784 36.000 19.63 16.69 0.00 4.01
2611 6983 5.391312 AAAATAACTAAGGTGCAGCAAGG 57.609 39.130 19.63 9.37 0.00 3.61
2612 6984 3.721087 ATAACTAAGGTGCAGCAAGGT 57.279 42.857 19.63 15.62 0.00 3.50
2613 6985 1.609208 AACTAAGGTGCAGCAAGGTG 58.391 50.000 19.63 5.83 0.00 4.00
2614 6986 0.250901 ACTAAGGTGCAGCAAGGTGG 60.251 55.000 19.63 4.81 0.00 4.61
2615 6987 1.589716 CTAAGGTGCAGCAAGGTGGC 61.590 60.000 19.63 0.00 0.00 5.01
2616 6988 4.982701 AGGTGCAGCAAGGTGGCC 62.983 66.667 19.63 0.00 0.00 5.36
2619 6991 4.536526 TGCAGCAAGGTGGCCCAA 62.537 61.111 0.00 0.00 0.00 4.12
2620 6992 2.999063 GCAGCAAGGTGGCCCAAT 60.999 61.111 0.00 0.00 0.00 3.16
2621 6993 3.010413 GCAGCAAGGTGGCCCAATC 62.010 63.158 0.00 0.00 0.00 2.67
2622 6994 2.037847 AGCAAGGTGGCCCAATCC 59.962 61.111 0.00 0.00 0.00 3.01
2623 6995 2.037847 GCAAGGTGGCCCAATCCT 59.962 61.111 0.00 0.00 0.00 3.24
2624 6996 1.610379 GCAAGGTGGCCCAATCCTT 60.610 57.895 0.00 6.54 41.53 3.36
2625 6997 1.194121 GCAAGGTGGCCCAATCCTTT 61.194 55.000 13.49 0.00 39.22 3.11
2626 6998 1.351076 CAAGGTGGCCCAATCCTTTT 58.649 50.000 13.49 0.00 39.22 2.27
2627 6999 1.699083 CAAGGTGGCCCAATCCTTTTT 59.301 47.619 13.49 0.00 39.22 1.94
2628 7000 1.351076 AGGTGGCCCAATCCTTTTTG 58.649 50.000 0.00 0.00 0.00 2.44
2629 7001 0.324614 GGTGGCCCAATCCTTTTTGG 59.675 55.000 0.00 0.00 44.82 3.28
2671 7043 6.502136 AGGAACTCTTATACAAAGCAAAGC 57.498 37.500 0.00 0.00 0.00 3.51
2672 7044 5.122396 AGGAACTCTTATACAAAGCAAAGCG 59.878 40.000 0.00 0.00 0.00 4.68
2673 7045 4.342352 ACTCTTATACAAAGCAAAGCGC 57.658 40.909 0.00 0.00 42.91 5.92
2674 7046 3.127030 ACTCTTATACAAAGCAAAGCGCC 59.873 43.478 2.29 0.00 44.04 6.53
2675 7047 2.422127 TCTTATACAAAGCAAAGCGCCC 59.578 45.455 2.29 0.00 44.04 6.13
2676 7048 1.099689 TATACAAAGCAAAGCGCCCC 58.900 50.000 2.29 0.00 44.04 5.80
2677 7049 1.604147 ATACAAAGCAAAGCGCCCCC 61.604 55.000 2.29 0.00 44.04 5.40
2678 7050 4.722855 CAAAGCAAAGCGCCCCCG 62.723 66.667 2.29 0.00 44.04 5.73
2679 7051 4.966787 AAAGCAAAGCGCCCCCGA 62.967 61.111 2.29 0.00 44.04 5.14
2683 7055 3.431725 CAAAGCGCCCCCGAGAAC 61.432 66.667 2.29 0.00 36.29 3.01
2684 7056 3.948719 AAAGCGCCCCCGAGAACA 61.949 61.111 2.29 0.00 36.29 3.18
2685 7057 4.699522 AAGCGCCCCCGAGAACAC 62.700 66.667 2.29 0.00 36.29 3.32
2687 7059 4.778143 GCGCCCCCGAGAACACAT 62.778 66.667 0.00 0.00 36.29 3.21
2688 7060 2.819595 CGCCCCCGAGAACACATG 60.820 66.667 0.00 0.00 36.29 3.21
2689 7061 2.668632 GCCCCCGAGAACACATGA 59.331 61.111 0.00 0.00 0.00 3.07
2690 7062 1.450312 GCCCCCGAGAACACATGAG 60.450 63.158 0.00 0.00 0.00 2.90
2691 7063 1.899437 GCCCCCGAGAACACATGAGA 61.899 60.000 0.00 0.00 0.00 3.27
2692 7064 0.613260 CCCCCGAGAACACATGAGAA 59.387 55.000 0.00 0.00 0.00 2.87
2693 7065 1.210478 CCCCCGAGAACACATGAGAAT 59.790 52.381 0.00 0.00 0.00 2.40
2694 7066 2.356125 CCCCCGAGAACACATGAGAATT 60.356 50.000 0.00 0.00 0.00 2.17
2695 7067 2.679837 CCCCGAGAACACATGAGAATTG 59.320 50.000 0.00 0.00 0.00 2.32
2696 7068 2.096496 CCCGAGAACACATGAGAATTGC 59.904 50.000 0.00 0.00 0.00 3.56
2697 7069 3.005554 CCGAGAACACATGAGAATTGCT 58.994 45.455 0.00 0.00 0.00 3.91
2698 7070 3.181513 CCGAGAACACATGAGAATTGCTG 60.182 47.826 0.00 0.00 0.00 4.41
2699 7071 3.727079 CGAGAACACATGAGAATTGCTGC 60.727 47.826 0.00 0.00 0.00 5.25
2700 7072 2.490903 AGAACACATGAGAATTGCTGCC 59.509 45.455 0.00 0.00 0.00 4.85
2701 7073 1.913778 ACACATGAGAATTGCTGCCA 58.086 45.000 0.00 0.00 0.00 4.92
2702 7074 2.241160 ACACATGAGAATTGCTGCCAA 58.759 42.857 0.00 0.00 35.01 4.52
2703 7075 2.230508 ACACATGAGAATTGCTGCCAAG 59.769 45.455 0.00 0.00 33.80 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.036732 GGAGGATGAAGGTGTGTGCA 59.963 55.000 0.00 0.00 0.00 4.57
13 14 0.348370 AGGGGTGGAGAATGGAGGAT 59.652 55.000 0.00 0.00 0.00 3.24
34 35 5.363939 GCTCTGAATCATAACTTACAGGCT 58.636 41.667 0.00 0.00 0.00 4.58
46 47 2.752154 GCAATCCCTGGCTCTGAATCAT 60.752 50.000 0.00 0.00 0.00 2.45
49 50 0.465097 CGCAATCCCTGGCTCTGAAT 60.465 55.000 0.00 0.00 0.00 2.57
53 54 3.272364 TTGCGCAATCCCTGGCTCT 62.272 57.895 21.02 0.00 0.00 4.09
70 71 2.121992 CTGGCCACTCTCAGCACCTT 62.122 60.000 0.00 0.00 0.00 3.50
93 96 2.281761 CTTCGCCAGCCACCACTT 60.282 61.111 0.00 0.00 0.00 3.16
162 165 2.030274 GTGCGTCAAAGCCTGGTAAAAT 60.030 45.455 0.00 0.00 36.02 1.82
178 181 2.949451 TTTTGTGAAACCATGTGCGT 57.051 40.000 0.00 0.00 34.36 5.24
230 233 6.757897 TGTCCACATAGATGAACATTTTCC 57.242 37.500 0.00 0.00 0.00 3.13
377 386 6.943981 TCTCACACGTGAACATTTCTAAAAG 58.056 36.000 25.01 1.53 39.39 2.27
394 403 3.665745 ACATGCCCATTTTTCTCACAC 57.334 42.857 0.00 0.00 0.00 3.82
408 2728 5.415701 TGAACATCTCTTTAAGGAACATGCC 59.584 40.000 0.00 0.00 0.00 4.40
589 2942 7.647715 GCAACTTTATTCTAGTGTTCTTGCAAA 59.352 33.333 0.00 0.00 29.30 3.68
592 2945 6.903419 AGCAACTTTATTCTAGTGTTCTTGC 58.097 36.000 0.00 0.00 0.00 4.01
593 2946 8.443937 GGTAGCAACTTTATTCTAGTGTTCTTG 58.556 37.037 0.00 0.00 0.00 3.02
594 2947 7.331193 CGGTAGCAACTTTATTCTAGTGTTCTT 59.669 37.037 0.00 0.00 0.00 2.52
596 2949 6.810182 TCGGTAGCAACTTTATTCTAGTGTTC 59.190 38.462 0.00 0.00 0.00 3.18
598 2951 6.276832 TCGGTAGCAACTTTATTCTAGTGT 57.723 37.500 0.00 0.00 0.00 3.55
608 3595 1.463444 GCGTTCATCGGTAGCAACTTT 59.537 47.619 0.00 0.00 40.26 2.66
617 3604 2.665649 TACTCAATGCGTTCATCGGT 57.334 45.000 0.00 0.00 40.26 4.69
624 3611 6.574350 AGACTAGCTAAATACTCAATGCGTT 58.426 36.000 0.00 0.00 0.00 4.84
626 3613 6.442952 AGAGACTAGCTAAATACTCAATGCG 58.557 40.000 14.20 0.00 0.00 4.73
627 3614 9.921637 AATAGAGACTAGCTAAATACTCAATGC 57.078 33.333 14.20 0.00 0.00 3.56
688 3675 9.528018 AGAATTAACGAAATCAACACAAAATGT 57.472 25.926 0.00 0.00 46.42 2.71
744 3731 4.202253 CGGACAGGAATCATGTTATCCTCA 60.202 45.833 1.00 0.00 41.63 3.86
771 3758 2.245096 CGTACGTGGAAGGTTTAGACG 58.755 52.381 7.22 0.00 35.89 4.18
845 5066 4.387598 ACATTAAGATGCAGAGATGCTCC 58.612 43.478 1.53 0.00 36.72 4.70
947 5168 0.540133 TGGATGCAAGAAGGCTGCAA 60.540 50.000 3.14 0.00 42.12 4.08
1011 5232 2.556287 CGCGTCCTCCAAAAGTGC 59.444 61.111 0.00 0.00 0.00 4.40
1013 5234 1.004918 CTCCGCGTCCTCCAAAAGT 60.005 57.895 4.92 0.00 0.00 2.66
1046 5267 1.447314 CTTACGGACAGGGCGTTCC 60.447 63.158 0.00 0.00 0.00 3.62
1080 5304 7.885297 TCAACTAATTTTGAATGGAGGAAGTG 58.115 34.615 0.00 0.00 32.42 3.16
1143 5367 3.197766 TCCATCTGGAATTAGTTGACGCT 59.802 43.478 0.00 0.00 42.18 5.07
1144 5368 3.531538 TCCATCTGGAATTAGTTGACGC 58.468 45.455 0.00 0.00 42.18 5.19
1162 5399 5.773091 TCATGTACAGTAATACTCCCTCCA 58.227 41.667 0.33 0.00 0.00 3.86
1274 5515 3.939837 CTTCTCGCAGCCCTCGCAA 62.940 63.158 0.00 0.00 37.52 4.85
1298 5539 2.124570 CGGGACATGGCCTTCCTG 60.125 66.667 19.55 6.00 31.90 3.86
1350 5594 2.076100 GGATCGCATGTCTGTGTTTCA 58.924 47.619 0.00 0.00 34.41 2.69
1362 5606 1.268589 CGTACGAGAGTTGGATCGCAT 60.269 52.381 10.44 0.00 46.40 4.73
1680 5934 2.664436 GCAGGCGTGTACGTTGTCC 61.664 63.158 8.40 0.00 42.22 4.02
1712 5966 7.950124 AGTAAATTTCTTTTGGAGGAATGGAGA 59.050 33.333 0.00 0.00 33.67 3.71
1769 6025 0.248743 ACTTGACGTGCGTTCTTCGA 60.249 50.000 0.00 0.00 42.86 3.71
1771 6027 3.710233 CACTTGACGTGCGTTCTTC 57.290 52.632 0.00 0.00 36.72 2.87
1803 6059 3.523564 GCATATTCCCCTTGCCCTAGATA 59.476 47.826 0.00 0.00 0.00 1.98
1804 6060 2.310052 GCATATTCCCCTTGCCCTAGAT 59.690 50.000 0.00 0.00 0.00 1.98
1805 6061 1.705186 GCATATTCCCCTTGCCCTAGA 59.295 52.381 0.00 0.00 0.00 2.43
1806 6062 1.707427 AGCATATTCCCCTTGCCCTAG 59.293 52.381 0.00 0.00 37.07 3.02
1831 6087 0.324943 ATCCGGTGGTCAAGTCCAAG 59.675 55.000 0.00 0.00 39.34 3.61
1869 6125 9.191995 CTGTGATGTAAAACAGCATCGTATATA 57.808 33.333 0.93 0.00 46.78 0.86
1870 6126 7.926018 TCTGTGATGTAAAACAGCATCGTATAT 59.074 33.333 0.93 0.00 46.78 0.86
1871 6127 7.222031 GTCTGTGATGTAAAACAGCATCGTATA 59.778 37.037 0.93 0.00 46.78 1.47
1872 6128 6.036083 GTCTGTGATGTAAAACAGCATCGTAT 59.964 38.462 0.93 0.00 46.78 3.06
1873 6129 5.347635 GTCTGTGATGTAAAACAGCATCGTA 59.652 40.000 0.93 0.00 46.78 3.43
1923 6180 3.795623 TGTCCACTAGCCTCGAATAAC 57.204 47.619 0.00 0.00 0.00 1.89
1932 6189 0.461961 AGCGAGATTGTCCACTAGCC 59.538 55.000 0.00 0.00 35.88 3.93
1943 6200 7.584122 TTACAGAAGATACCTTAGCGAGATT 57.416 36.000 0.00 0.00 31.62 2.40
2072 6329 1.961793 TATTCGTGCCACCCTTATGC 58.038 50.000 0.00 0.00 0.00 3.14
2108 6365 3.349927 TCTACGCCTTAACTCTGCAGTA 58.650 45.455 14.67 0.00 30.14 2.74
2109 6366 2.164624 CTCTACGCCTTAACTCTGCAGT 59.835 50.000 14.67 0.00 0.00 4.40
2110 6367 2.480416 CCTCTACGCCTTAACTCTGCAG 60.480 54.545 7.63 7.63 0.00 4.41
2144 6515 9.152595 CCTTAGAAACTGTATTCTTCCTTGTAC 57.847 37.037 9.41 0.00 40.13 2.90
2201 6572 1.155424 TTCGTGGTTCAGACGGTTGC 61.155 55.000 0.00 0.00 37.43 4.17
2209 6580 0.804989 GGATGGCTTTCGTGGTTCAG 59.195 55.000 0.00 0.00 0.00 3.02
2210 6581 0.109532 TGGATGGCTTTCGTGGTTCA 59.890 50.000 0.00 0.00 0.00 3.18
2217 6588 1.705337 ATCGCGTTGGATGGCTTTCG 61.705 55.000 5.77 0.00 0.00 3.46
2235 6606 1.527611 TCGCGGACCGATACAGGAT 60.528 57.895 20.50 0.00 41.89 3.24
2257 6628 2.356673 AGAAAACGCGTCCGGACC 60.357 61.111 28.52 19.32 39.22 4.46
2276 6647 2.285756 CACGTTTGTCTTCGGTTTGCTA 59.714 45.455 0.00 0.00 0.00 3.49
2277 6648 1.063469 CACGTTTGTCTTCGGTTTGCT 59.937 47.619 0.00 0.00 0.00 3.91
2298 6669 0.179054 GTACTCCCGCAAATCTCCCC 60.179 60.000 0.00 0.00 0.00 4.81
2304 6675 1.219935 GGTCCGTACTCCCGCAAAT 59.780 57.895 0.00 0.00 0.00 2.32
2316 6687 3.782443 GGCTTGGGATCGGTCCGT 61.782 66.667 9.04 0.00 46.09 4.69
2374 6746 2.470362 TTGACCAAAAACGCGCGGA 61.470 52.632 35.22 2.69 0.00 5.54
2386 6758 1.118965 TTCTGGAGCGGAGTTGACCA 61.119 55.000 0.00 0.00 0.00 4.02
2392 6764 1.006102 CAACGTTCTGGAGCGGAGT 60.006 57.895 0.00 0.00 39.38 3.85
2394 6766 0.389817 CATCAACGTTCTGGAGCGGA 60.390 55.000 0.00 0.00 39.38 5.54
2405 6777 3.695830 ATACTTGTGGGTCATCAACGT 57.304 42.857 0.00 0.00 0.00 3.99
2409 6781 4.002256 TCCCTATACTTGTGGGTCATCA 57.998 45.455 0.00 0.00 41.58 3.07
2410 6782 5.308237 AGATTCCCTATACTTGTGGGTCATC 59.692 44.000 0.00 0.00 41.58 2.92
2411 6783 5.227593 AGATTCCCTATACTTGTGGGTCAT 58.772 41.667 0.00 0.00 41.58 3.06
2412 6784 4.631234 AGATTCCCTATACTTGTGGGTCA 58.369 43.478 0.00 0.00 41.58 4.02
2413 6785 6.350277 CGATAGATTCCCTATACTTGTGGGTC 60.350 46.154 0.00 0.00 38.17 4.46
2414 6786 5.480772 CGATAGATTCCCTATACTTGTGGGT 59.519 44.000 0.00 0.00 38.17 4.51
2415 6787 5.480772 ACGATAGATTCCCTATACTTGTGGG 59.519 44.000 0.00 0.00 38.17 4.61
2416 6788 6.591750 ACGATAGATTCCCTATACTTGTGG 57.408 41.667 0.00 0.00 38.17 4.17
2417 6789 8.338072 AGTACGATAGATTCCCTATACTTGTG 57.662 38.462 0.00 0.00 38.17 3.33
2418 6790 7.611079 GGAGTACGATAGATTCCCTATACTTGT 59.389 40.741 0.00 0.00 38.17 3.16
2419 6791 7.830201 AGGAGTACGATAGATTCCCTATACTTG 59.170 40.741 0.00 0.00 38.17 3.16
2420 6792 7.931046 AGGAGTACGATAGATTCCCTATACTT 58.069 38.462 0.00 0.00 38.17 2.24
2421 6793 7.513560 AGGAGTACGATAGATTCCCTATACT 57.486 40.000 0.00 0.00 38.17 2.12
2422 6794 8.578448 AAAGGAGTACGATAGATTCCCTATAC 57.422 38.462 0.00 0.00 38.17 1.47
2423 6795 7.551974 CGAAAGGAGTACGATAGATTCCCTATA 59.448 40.741 0.00 0.00 38.17 1.31
2424 6796 6.374894 CGAAAGGAGTACGATAGATTCCCTAT 59.625 42.308 0.00 0.00 40.66 2.57
2425 6797 5.704515 CGAAAGGAGTACGATAGATTCCCTA 59.295 44.000 0.00 0.00 41.38 3.53
2426 6798 4.519730 CGAAAGGAGTACGATAGATTCCCT 59.480 45.833 0.00 0.00 41.38 4.20
2427 6799 4.518211 TCGAAAGGAGTACGATAGATTCCC 59.482 45.833 0.00 0.00 41.38 3.97
2428 6800 5.686159 TCGAAAGGAGTACGATAGATTCC 57.314 43.478 0.00 0.00 41.38 3.01
2429 6801 8.505625 ACTTATCGAAAGGAGTACGATAGATTC 58.494 37.037 0.00 0.00 45.19 2.52
2430 6802 8.393671 ACTTATCGAAAGGAGTACGATAGATT 57.606 34.615 0.00 0.00 45.19 2.40
2431 6803 7.982761 ACTTATCGAAAGGAGTACGATAGAT 57.017 36.000 0.00 0.00 45.19 1.98
2432 6804 8.893219 TTACTTATCGAAAGGAGTACGATAGA 57.107 34.615 0.00 0.00 45.19 1.98
2435 6807 9.282569 ACTATTACTTATCGAAAGGAGTACGAT 57.717 33.333 0.00 0.00 46.07 3.73
2436 6808 8.554528 CACTATTACTTATCGAAAGGAGTACGA 58.445 37.037 10.65 0.00 40.18 3.43
2437 6809 8.341173 ACACTATTACTTATCGAAAGGAGTACG 58.659 37.037 10.65 0.00 0.00 3.67
2438 6810 9.662545 GACACTATTACTTATCGAAAGGAGTAC 57.337 37.037 10.65 0.00 0.00 2.73
2439 6811 8.554528 CGACACTATTACTTATCGAAAGGAGTA 58.445 37.037 10.65 4.96 0.00 2.59
2440 6812 7.281774 TCGACACTATTACTTATCGAAAGGAGT 59.718 37.037 10.65 5.74 35.80 3.85
2441 6813 7.637229 TCGACACTATTACTTATCGAAAGGAG 58.363 38.462 10.65 0.75 35.80 3.69
2442 6814 7.558161 TCGACACTATTACTTATCGAAAGGA 57.442 36.000 10.65 1.49 35.80 3.36
2443 6815 7.167136 GGTTCGACACTATTACTTATCGAAAGG 59.833 40.741 8.30 0.00 46.48 3.11
2444 6816 7.167136 GGGTTCGACACTATTACTTATCGAAAG 59.833 40.741 8.30 0.00 46.48 2.62
2445 6817 6.974622 GGGTTCGACACTATTACTTATCGAAA 59.025 38.462 8.30 0.00 46.48 3.46
2446 6818 6.095300 TGGGTTCGACACTATTACTTATCGAA 59.905 38.462 2.99 2.99 43.90 3.71
2447 6819 5.589855 TGGGTTCGACACTATTACTTATCGA 59.410 40.000 0.00 0.00 36.85 3.59
2448 6820 5.824429 TGGGTTCGACACTATTACTTATCG 58.176 41.667 0.00 0.00 0.00 2.92
2449 6821 6.197842 CGTTGGGTTCGACACTATTACTTATC 59.802 42.308 0.00 0.00 0.00 1.75
2450 6822 6.038356 CGTTGGGTTCGACACTATTACTTAT 58.962 40.000 0.00 0.00 0.00 1.73
2451 6823 5.182950 TCGTTGGGTTCGACACTATTACTTA 59.817 40.000 0.00 0.00 32.30 2.24
2452 6824 4.022068 TCGTTGGGTTCGACACTATTACTT 60.022 41.667 0.00 0.00 32.30 2.24
2453 6825 3.507233 TCGTTGGGTTCGACACTATTACT 59.493 43.478 0.00 0.00 32.30 2.24
2454 6826 3.836949 TCGTTGGGTTCGACACTATTAC 58.163 45.455 0.00 0.00 32.30 1.89
2455 6827 3.119388 CCTCGTTGGGTTCGACACTATTA 60.119 47.826 0.00 0.00 33.71 0.98
2456 6828 2.353406 CCTCGTTGGGTTCGACACTATT 60.353 50.000 0.00 0.00 33.71 1.73
2457 6829 1.203994 CCTCGTTGGGTTCGACACTAT 59.796 52.381 0.00 0.00 33.71 2.12
2458 6830 0.599558 CCTCGTTGGGTTCGACACTA 59.400 55.000 0.00 0.00 33.71 2.74
2459 6831 1.111116 TCCTCGTTGGGTTCGACACT 61.111 55.000 0.00 0.00 36.20 3.55
2460 6832 0.666577 CTCCTCGTTGGGTTCGACAC 60.667 60.000 0.00 0.00 36.20 3.67
2461 6833 1.663739 CTCCTCGTTGGGTTCGACA 59.336 57.895 0.00 0.00 36.20 4.35
2462 6834 1.737008 GCTCCTCGTTGGGTTCGAC 60.737 63.158 0.00 0.00 36.20 4.20
2463 6835 2.154798 CTGCTCCTCGTTGGGTTCGA 62.155 60.000 0.00 0.00 36.20 3.71
2464 6836 1.738099 CTGCTCCTCGTTGGGTTCG 60.738 63.158 0.00 0.00 36.20 3.95
2465 6837 0.034896 TTCTGCTCCTCGTTGGGTTC 59.965 55.000 0.00 0.00 36.20 3.62
2466 6838 0.035458 CTTCTGCTCCTCGTTGGGTT 59.965 55.000 0.00 0.00 36.20 4.11
2467 6839 0.832135 TCTTCTGCTCCTCGTTGGGT 60.832 55.000 0.00 0.00 36.20 4.51
2468 6840 0.321671 TTCTTCTGCTCCTCGTTGGG 59.678 55.000 0.00 0.00 36.20 4.12
2469 6841 2.169832 TTTCTTCTGCTCCTCGTTGG 57.830 50.000 0.00 0.00 37.10 3.77
2470 6842 3.748048 TCATTTTCTTCTGCTCCTCGTTG 59.252 43.478 0.00 0.00 0.00 4.10
2471 6843 3.748568 GTCATTTTCTTCTGCTCCTCGTT 59.251 43.478 0.00 0.00 0.00 3.85
2472 6844 3.244215 TGTCATTTTCTTCTGCTCCTCGT 60.244 43.478 0.00 0.00 0.00 4.18
2473 6845 3.329386 TGTCATTTTCTTCTGCTCCTCG 58.671 45.455 0.00 0.00 0.00 4.63
2474 6846 4.379290 GCTTGTCATTTTCTTCTGCTCCTC 60.379 45.833 0.00 0.00 0.00 3.71
2475 6847 3.505293 GCTTGTCATTTTCTTCTGCTCCT 59.495 43.478 0.00 0.00 0.00 3.69
2476 6848 3.669023 CGCTTGTCATTTTCTTCTGCTCC 60.669 47.826 0.00 0.00 0.00 4.70
2477 6849 3.486584 CGCTTGTCATTTTCTTCTGCTC 58.513 45.455 0.00 0.00 0.00 4.26
2478 6850 2.227388 CCGCTTGTCATTTTCTTCTGCT 59.773 45.455 0.00 0.00 0.00 4.24
2479 6851 2.030805 ACCGCTTGTCATTTTCTTCTGC 60.031 45.455 0.00 0.00 0.00 4.26
2480 6852 3.904136 ACCGCTTGTCATTTTCTTCTG 57.096 42.857 0.00 0.00 0.00 3.02
2481 6853 4.918810 AAACCGCTTGTCATTTTCTTCT 57.081 36.364 0.00 0.00 0.00 2.85
2482 6854 5.040635 TGAAAACCGCTTGTCATTTTCTTC 58.959 37.500 9.08 0.00 40.25 2.87
2483 6855 5.004922 TGAAAACCGCTTGTCATTTTCTT 57.995 34.783 9.08 0.00 40.25 2.52
2484 6856 4.499696 CCTGAAAACCGCTTGTCATTTTCT 60.500 41.667 9.08 0.00 40.25 2.52
2485 6857 3.735746 CCTGAAAACCGCTTGTCATTTTC 59.264 43.478 0.00 0.00 40.09 2.29
2486 6858 3.383185 TCCTGAAAACCGCTTGTCATTTT 59.617 39.130 0.00 0.00 0.00 1.82
2487 6859 2.955660 TCCTGAAAACCGCTTGTCATTT 59.044 40.909 0.00 0.00 0.00 2.32
2488 6860 2.582052 TCCTGAAAACCGCTTGTCATT 58.418 42.857 0.00 0.00 0.00 2.57
2489 6861 2.270352 TCCTGAAAACCGCTTGTCAT 57.730 45.000 0.00 0.00 0.00 3.06
2490 6862 1.946768 CTTCCTGAAAACCGCTTGTCA 59.053 47.619 0.00 0.00 0.00 3.58
2491 6863 1.266989 CCTTCCTGAAAACCGCTTGTC 59.733 52.381 0.00 0.00 0.00 3.18
2492 6864 1.318576 CCTTCCTGAAAACCGCTTGT 58.681 50.000 0.00 0.00 0.00 3.16
2493 6865 1.318576 ACCTTCCTGAAAACCGCTTG 58.681 50.000 0.00 0.00 0.00 4.01
2494 6866 2.943036 TACCTTCCTGAAAACCGCTT 57.057 45.000 0.00 0.00 0.00 4.68
2495 6867 3.434940 AATACCTTCCTGAAAACCGCT 57.565 42.857 0.00 0.00 0.00 5.52
2496 6868 5.007724 CAGATAATACCTTCCTGAAAACCGC 59.992 44.000 0.00 0.00 0.00 5.68
2497 6869 5.007724 GCAGATAATACCTTCCTGAAAACCG 59.992 44.000 0.00 0.00 0.00 4.44
2498 6870 5.885912 TGCAGATAATACCTTCCTGAAAACC 59.114 40.000 0.00 0.00 0.00 3.27
2499 6871 7.391148 TTGCAGATAATACCTTCCTGAAAAC 57.609 36.000 0.00 0.00 0.00 2.43
2500 6872 6.095440 GCTTGCAGATAATACCTTCCTGAAAA 59.905 38.462 0.00 0.00 0.00 2.29
2501 6873 5.590259 GCTTGCAGATAATACCTTCCTGAAA 59.410 40.000 0.00 0.00 0.00 2.69
2502 6874 5.126067 GCTTGCAGATAATACCTTCCTGAA 58.874 41.667 0.00 0.00 0.00 3.02
2503 6875 4.164030 TGCTTGCAGATAATACCTTCCTGA 59.836 41.667 0.00 0.00 0.00 3.86
2504 6876 4.274459 GTGCTTGCAGATAATACCTTCCTG 59.726 45.833 0.00 0.00 0.00 3.86
2505 6877 4.164988 AGTGCTTGCAGATAATACCTTCCT 59.835 41.667 0.00 0.00 0.00 3.36
2506 6878 4.274459 CAGTGCTTGCAGATAATACCTTCC 59.726 45.833 0.00 0.00 0.00 3.46
2507 6879 5.118990 TCAGTGCTTGCAGATAATACCTTC 58.881 41.667 0.00 0.00 0.00 3.46
2508 6880 5.102953 TCAGTGCTTGCAGATAATACCTT 57.897 39.130 0.00 0.00 0.00 3.50
2509 6881 4.760530 TCAGTGCTTGCAGATAATACCT 57.239 40.909 0.00 0.00 0.00 3.08
2510 6882 5.818136 TTTCAGTGCTTGCAGATAATACC 57.182 39.130 0.00 0.00 0.00 2.73
2511 6883 9.956720 AATAATTTCAGTGCTTGCAGATAATAC 57.043 29.630 0.00 0.00 0.00 1.89
2512 6884 9.955208 CAATAATTTCAGTGCTTGCAGATAATA 57.045 29.630 0.00 0.00 0.00 0.98
2513 6885 7.924412 CCAATAATTTCAGTGCTTGCAGATAAT 59.076 33.333 0.00 0.00 0.00 1.28
2514 6886 7.093814 ACCAATAATTTCAGTGCTTGCAGATAA 60.094 33.333 0.00 0.00 0.00 1.75
2515 6887 6.377996 ACCAATAATTTCAGTGCTTGCAGATA 59.622 34.615 0.00 0.00 0.00 1.98
2516 6888 5.186409 ACCAATAATTTCAGTGCTTGCAGAT 59.814 36.000 0.00 0.00 0.00 2.90
2517 6889 4.523943 ACCAATAATTTCAGTGCTTGCAGA 59.476 37.500 0.00 0.00 0.00 4.26
2518 6890 4.813027 ACCAATAATTTCAGTGCTTGCAG 58.187 39.130 0.00 0.00 0.00 4.41
2519 6891 4.870123 ACCAATAATTTCAGTGCTTGCA 57.130 36.364 0.00 0.00 0.00 4.08
2520 6892 6.155827 TGTTACCAATAATTTCAGTGCTTGC 58.844 36.000 0.00 0.00 0.00 4.01
2549 6921 9.417284 CCGTTACGAATTATCTTATCACAAAAC 57.583 33.333 6.24 0.00 0.00 2.43
2550 6922 8.605746 CCCGTTACGAATTATCTTATCACAAAA 58.394 33.333 6.24 0.00 0.00 2.44
2551 6923 7.765360 ACCCGTTACGAATTATCTTATCACAAA 59.235 33.333 6.24 0.00 0.00 2.83
2552 6924 7.267128 ACCCGTTACGAATTATCTTATCACAA 58.733 34.615 6.24 0.00 0.00 3.33
2553 6925 6.808829 ACCCGTTACGAATTATCTTATCACA 58.191 36.000 6.24 0.00 0.00 3.58
2554 6926 8.694394 GTTACCCGTTACGAATTATCTTATCAC 58.306 37.037 6.24 0.00 0.00 3.06
2555 6927 8.412456 TGTTACCCGTTACGAATTATCTTATCA 58.588 33.333 6.24 0.00 0.00 2.15
2556 6928 8.801715 TGTTACCCGTTACGAATTATCTTATC 57.198 34.615 6.24 0.00 0.00 1.75
2557 6929 9.252962 CTTGTTACCCGTTACGAATTATCTTAT 57.747 33.333 6.24 0.00 0.00 1.73
2558 6930 8.250332 ACTTGTTACCCGTTACGAATTATCTTA 58.750 33.333 6.24 0.00 0.00 2.10
2559 6931 7.099120 ACTTGTTACCCGTTACGAATTATCTT 58.901 34.615 6.24 0.00 0.00 2.40
2560 6932 6.633856 ACTTGTTACCCGTTACGAATTATCT 58.366 36.000 6.24 0.00 0.00 1.98
2561 6933 6.892310 ACTTGTTACCCGTTACGAATTATC 57.108 37.500 6.24 0.00 0.00 1.75
2562 6934 7.816995 TGTTACTTGTTACCCGTTACGAATTAT 59.183 33.333 6.24 0.00 0.00 1.28
2563 6935 7.148641 TGTTACTTGTTACCCGTTACGAATTA 58.851 34.615 6.24 0.00 0.00 1.40
2564 6936 5.988561 TGTTACTTGTTACCCGTTACGAATT 59.011 36.000 6.24 0.00 0.00 2.17
2565 6937 5.537188 TGTTACTTGTTACCCGTTACGAAT 58.463 37.500 6.24 0.00 0.00 3.34
2566 6938 4.938080 TGTTACTTGTTACCCGTTACGAA 58.062 39.130 6.24 0.00 0.00 3.85
2567 6939 4.576216 TGTTACTTGTTACCCGTTACGA 57.424 40.909 6.24 0.00 0.00 3.43
2568 6940 5.649602 TTTGTTACTTGTTACCCGTTACG 57.350 39.130 0.00 0.00 0.00 3.18
2569 6941 9.943163 TTATTTTTGTTACTTGTTACCCGTTAC 57.057 29.630 0.00 0.00 0.00 2.50
2570 6942 9.943163 GTTATTTTTGTTACTTGTTACCCGTTA 57.057 29.630 0.00 0.00 0.00 3.18
2571 6943 8.685427 AGTTATTTTTGTTACTTGTTACCCGTT 58.315 29.630 0.00 0.00 0.00 4.44
2572 6944 8.224389 AGTTATTTTTGTTACTTGTTACCCGT 57.776 30.769 0.00 0.00 0.00 5.28
2578 6950 9.524106 GCACCTTAGTTATTTTTGTTACTTGTT 57.476 29.630 0.00 0.00 0.00 2.83
2579 6951 8.688151 TGCACCTTAGTTATTTTTGTTACTTGT 58.312 29.630 0.00 0.00 0.00 3.16
2580 6952 9.180678 CTGCACCTTAGTTATTTTTGTTACTTG 57.819 33.333 0.00 0.00 0.00 3.16
2581 6953 7.865889 GCTGCACCTTAGTTATTTTTGTTACTT 59.134 33.333 0.00 0.00 0.00 2.24
2582 6954 7.013846 TGCTGCACCTTAGTTATTTTTGTTACT 59.986 33.333 0.00 0.00 0.00 2.24
2583 6955 7.142680 TGCTGCACCTTAGTTATTTTTGTTAC 58.857 34.615 0.00 0.00 0.00 2.50
2584 6956 7.278461 TGCTGCACCTTAGTTATTTTTGTTA 57.722 32.000 0.00 0.00 0.00 2.41
2585 6957 6.155475 TGCTGCACCTTAGTTATTTTTGTT 57.845 33.333 0.00 0.00 0.00 2.83
2586 6958 5.782893 TGCTGCACCTTAGTTATTTTTGT 57.217 34.783 0.00 0.00 0.00 2.83
2587 6959 5.634859 CCTTGCTGCACCTTAGTTATTTTTG 59.365 40.000 0.00 0.00 0.00 2.44
2588 6960 5.304357 ACCTTGCTGCACCTTAGTTATTTTT 59.696 36.000 0.00 0.00 0.00 1.94
2589 6961 4.832823 ACCTTGCTGCACCTTAGTTATTTT 59.167 37.500 0.00 0.00 0.00 1.82
2590 6962 4.218417 CACCTTGCTGCACCTTAGTTATTT 59.782 41.667 0.00 0.00 0.00 1.40
2591 6963 3.758554 CACCTTGCTGCACCTTAGTTATT 59.241 43.478 0.00 0.00 0.00 1.40
2592 6964 3.347216 CACCTTGCTGCACCTTAGTTAT 58.653 45.455 0.00 0.00 0.00 1.89
2593 6965 2.552155 CCACCTTGCTGCACCTTAGTTA 60.552 50.000 0.00 0.00 0.00 2.24
2594 6966 1.609208 CACCTTGCTGCACCTTAGTT 58.391 50.000 0.00 0.00 0.00 2.24
2595 6967 0.250901 CCACCTTGCTGCACCTTAGT 60.251 55.000 0.00 0.00 0.00 2.24
2596 6968 1.589716 GCCACCTTGCTGCACCTTAG 61.590 60.000 0.00 0.00 0.00 2.18
2597 6969 1.603455 GCCACCTTGCTGCACCTTA 60.603 57.895 0.00 0.00 0.00 2.69
2598 6970 2.914097 GCCACCTTGCTGCACCTT 60.914 61.111 0.00 0.00 0.00 3.50
2599 6971 4.982701 GGCCACCTTGCTGCACCT 62.983 66.667 0.00 0.00 0.00 4.00
2602 6974 3.831727 ATTGGGCCACCTTGCTGCA 62.832 57.895 5.23 0.00 37.76 4.41
2603 6975 2.999063 ATTGGGCCACCTTGCTGC 60.999 61.111 5.23 0.00 37.76 5.25
2604 6976 2.353610 GGATTGGGCCACCTTGCTG 61.354 63.158 5.23 0.00 37.76 4.41
2605 6977 2.037847 GGATTGGGCCACCTTGCT 59.962 61.111 5.23 0.00 37.76 3.91
2606 6978 1.194121 AAAGGATTGGGCCACCTTGC 61.194 55.000 24.61 10.77 42.25 4.01
2607 6979 1.351076 AAAAGGATTGGGCCACCTTG 58.649 50.000 24.61 0.00 42.25 3.61
2608 6980 1.699083 CAAAAAGGATTGGGCCACCTT 59.301 47.619 19.88 19.88 44.53 3.50
2609 6981 1.351076 CAAAAAGGATTGGGCCACCT 58.649 50.000 5.23 8.05 37.76 4.00
2610 6982 0.324614 CCAAAAAGGATTGGGCCACC 59.675 55.000 5.23 5.11 45.03 4.61
2611 6983 3.933879 CCAAAAAGGATTGGGCCAC 57.066 52.632 5.23 0.00 45.03 5.01
2622 6994 3.871006 GGCTTGTCCTTTGTTCCAAAAAG 59.129 43.478 0.00 0.00 34.94 2.27
2623 6995 3.517500 AGGCTTGTCCTTTGTTCCAAAAA 59.482 39.130 0.00 0.00 44.75 1.94
2624 6996 3.103742 AGGCTTGTCCTTTGTTCCAAAA 58.896 40.909 0.00 0.00 44.75 2.44
2625 6997 2.745968 AGGCTTGTCCTTTGTTCCAAA 58.254 42.857 0.00 0.00 44.75 3.28
2626 6998 2.452600 AGGCTTGTCCTTTGTTCCAA 57.547 45.000 0.00 0.00 44.75 3.53
2627 6999 2.708861 TCTAGGCTTGTCCTTTGTTCCA 59.291 45.455 0.00 0.00 44.75 3.53
2628 7000 3.339141 CTCTAGGCTTGTCCTTTGTTCC 58.661 50.000 0.00 0.00 44.75 3.62
2629 7001 3.008049 TCCTCTAGGCTTGTCCTTTGTTC 59.992 47.826 0.00 0.00 44.75 3.18
2630 7002 2.979678 TCCTCTAGGCTTGTCCTTTGTT 59.020 45.455 0.00 0.00 44.75 2.83
2631 7003 2.621070 TCCTCTAGGCTTGTCCTTTGT 58.379 47.619 0.00 0.00 44.75 2.83
2632 7004 3.008485 AGTTCCTCTAGGCTTGTCCTTTG 59.992 47.826 0.00 0.00 44.75 2.77
2633 7005 3.252351 AGTTCCTCTAGGCTTGTCCTTT 58.748 45.455 0.00 0.00 44.75 3.11
2634 7006 2.835156 GAGTTCCTCTAGGCTTGTCCTT 59.165 50.000 0.00 0.00 44.75 3.36
2636 7008 2.462723 AGAGTTCCTCTAGGCTTGTCC 58.537 52.381 0.00 0.00 39.28 4.02
2637 7009 5.862678 ATAAGAGTTCCTCTAGGCTTGTC 57.137 43.478 0.00 0.00 40.28 3.18
2638 7010 6.195700 TGTATAAGAGTTCCTCTAGGCTTGT 58.804 40.000 0.00 0.00 40.28 3.16
2639 7011 6.716934 TGTATAAGAGTTCCTCTAGGCTTG 57.283 41.667 0.00 0.00 40.28 4.01
2640 7012 7.633991 GCTTTGTATAAGAGTTCCTCTAGGCTT 60.634 40.741 0.00 0.00 40.28 4.35
2641 7013 6.183360 GCTTTGTATAAGAGTTCCTCTAGGCT 60.183 42.308 0.00 0.00 40.28 4.58
2642 7014 5.986741 GCTTTGTATAAGAGTTCCTCTAGGC 59.013 44.000 0.00 0.00 40.28 3.93
2643 7015 7.113658 TGCTTTGTATAAGAGTTCCTCTAGG 57.886 40.000 0.00 0.00 40.28 3.02
2644 7016 9.092876 CTTTGCTTTGTATAAGAGTTCCTCTAG 57.907 37.037 0.00 0.00 40.28 2.43
2645 7017 7.549488 GCTTTGCTTTGTATAAGAGTTCCTCTA 59.451 37.037 0.00 0.00 40.28 2.43
2646 7018 6.372937 GCTTTGCTTTGTATAAGAGTTCCTCT 59.627 38.462 0.00 0.00 43.37 3.69
2647 7019 6.547283 GCTTTGCTTTGTATAAGAGTTCCTC 58.453 40.000 0.00 0.00 0.00 3.71
2648 7020 5.122396 CGCTTTGCTTTGTATAAGAGTTCCT 59.878 40.000 0.00 0.00 0.00 3.36
2649 7021 5.324697 CGCTTTGCTTTGTATAAGAGTTCC 58.675 41.667 0.00 0.00 0.00 3.62
2650 7022 4.788609 GCGCTTTGCTTTGTATAAGAGTTC 59.211 41.667 0.00 0.00 41.73 3.01
2651 7023 4.379499 GGCGCTTTGCTTTGTATAAGAGTT 60.379 41.667 7.64 0.00 45.43 3.01
2652 7024 3.127030 GGCGCTTTGCTTTGTATAAGAGT 59.873 43.478 7.64 0.00 45.43 3.24
2653 7025 3.487544 GGGCGCTTTGCTTTGTATAAGAG 60.488 47.826 7.64 0.00 45.43 2.85
2654 7026 2.422127 GGGCGCTTTGCTTTGTATAAGA 59.578 45.455 7.64 0.00 45.43 2.10
2655 7027 2.479560 GGGGCGCTTTGCTTTGTATAAG 60.480 50.000 7.64 0.00 45.43 1.73
2656 7028 1.474879 GGGGCGCTTTGCTTTGTATAA 59.525 47.619 7.64 0.00 45.43 0.98
2657 7029 1.099689 GGGGCGCTTTGCTTTGTATA 58.900 50.000 7.64 0.00 45.43 1.47
2658 7030 1.604147 GGGGGCGCTTTGCTTTGTAT 61.604 55.000 7.64 0.00 45.43 2.29
2659 7031 2.272447 GGGGGCGCTTTGCTTTGTA 61.272 57.895 7.64 0.00 45.43 2.41
2660 7032 3.615709 GGGGGCGCTTTGCTTTGT 61.616 61.111 7.64 0.00 45.43 2.83
2661 7033 4.722855 CGGGGGCGCTTTGCTTTG 62.723 66.667 7.64 0.00 45.43 2.77
2662 7034 4.966787 TCGGGGGCGCTTTGCTTT 62.967 61.111 7.64 0.00 45.43 3.51
2666 7038 3.431725 GTTCTCGGGGGCGCTTTG 61.432 66.667 7.64 0.00 0.00 2.77
2667 7039 3.948719 TGTTCTCGGGGGCGCTTT 61.949 61.111 7.64 0.00 0.00 3.51
2668 7040 4.699522 GTGTTCTCGGGGGCGCTT 62.700 66.667 7.64 0.00 0.00 4.68
2670 7042 4.778143 ATGTGTTCTCGGGGGCGC 62.778 66.667 0.00 0.00 0.00 6.53
2671 7043 2.819595 CATGTGTTCTCGGGGGCG 60.820 66.667 0.00 0.00 0.00 6.13
2672 7044 1.450312 CTCATGTGTTCTCGGGGGC 60.450 63.158 0.00 0.00 0.00 5.80
2673 7045 0.613260 TTCTCATGTGTTCTCGGGGG 59.387 55.000 0.00 0.00 0.00 5.40
2674 7046 2.679837 CAATTCTCATGTGTTCTCGGGG 59.320 50.000 0.00 0.00 0.00 5.73
2675 7047 2.096496 GCAATTCTCATGTGTTCTCGGG 59.904 50.000 0.00 0.00 0.00 5.14
2676 7048 3.005554 AGCAATTCTCATGTGTTCTCGG 58.994 45.455 0.00 0.00 0.00 4.63
2677 7049 3.727079 GCAGCAATTCTCATGTGTTCTCG 60.727 47.826 0.00 0.00 0.00 4.04
2678 7050 3.427233 GGCAGCAATTCTCATGTGTTCTC 60.427 47.826 0.00 0.00 0.00 2.87
2679 7051 2.490903 GGCAGCAATTCTCATGTGTTCT 59.509 45.455 0.00 0.00 0.00 3.01
2680 7052 2.229543 TGGCAGCAATTCTCATGTGTTC 59.770 45.455 0.00 0.00 0.00 3.18
2681 7053 2.241160 TGGCAGCAATTCTCATGTGTT 58.759 42.857 0.00 0.00 0.00 3.32
2682 7054 1.913778 TGGCAGCAATTCTCATGTGT 58.086 45.000 0.00 0.00 0.00 3.72
2683 7055 2.876091 CTTGGCAGCAATTCTCATGTG 58.124 47.619 0.00 0.00 0.00 3.21
2684 7056 1.203994 GCTTGGCAGCAATTCTCATGT 59.796 47.619 0.00 0.00 46.49 3.21
2685 7057 1.922570 GCTTGGCAGCAATTCTCATG 58.077 50.000 0.00 0.00 46.49 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.