Multiple sequence alignment - TraesCS6B01G286900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G286900 chr6B 100.000 3690 0 0 1 3690 516881947 516878258 0.000000e+00 6815.0
1 TraesCS6B01G286900 chr6A 91.056 3768 181 66 1 3690 482621943 482618254 0.000000e+00 4948.0
2 TraesCS6B01G286900 chr6D 91.364 3601 151 46 182 3688 342474521 342470987 0.000000e+00 4780.0
3 TraesCS6B01G286900 chr6D 90.164 183 14 1 1 179 342478490 342478308 6.160000e-58 235.0
4 TraesCS6B01G286900 chr2A 84.192 582 76 12 1651 2224 645311345 645311918 5.390000e-153 551.0
5 TraesCS6B01G286900 chr2D 86.614 508 55 11 1722 2224 500362679 500363178 1.940000e-152 549.0
6 TraesCS6B01G286900 chr2D 88.210 458 17 11 1054 1489 114646639 114647081 2.540000e-141 512.0
7 TraesCS6B01G286900 chr2B 86.282 503 54 13 1722 2218 588067415 588067908 1.950000e-147 532.0
8 TraesCS6B01G286900 chrUn 88.034 351 38 3 1709 2057 365429968 365429620 2.650000e-111 412.0
9 TraesCS6B01G286900 chr4B 88.034 351 38 3 1709 2057 641891314 641890966 2.650000e-111 412.0
10 TraesCS6B01G286900 chr5A 90.260 308 30 0 1709 2016 679875216 679874909 1.600000e-108 403.0
11 TraesCS6B01G286900 chr5A 86.053 337 47 0 1706 2042 685432403 685432739 2.710000e-96 363.0
12 TraesCS6B01G286900 chr3B 86.250 80 11 0 3415 3494 738638990 738638911 1.830000e-13 87.9
13 TraesCS6B01G286900 chr1D 89.231 65 5 2 3279 3342 361179370 361179307 3.050000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G286900 chr6B 516878258 516881947 3689 True 6815.0 6815 100.000 1 3690 1 chr6B.!!$R1 3689
1 TraesCS6B01G286900 chr6A 482618254 482621943 3689 True 4948.0 4948 91.056 1 3690 1 chr6A.!!$R1 3689
2 TraesCS6B01G286900 chr6D 342470987 342478490 7503 True 2507.5 4780 90.764 1 3688 2 chr6D.!!$R1 3687
3 TraesCS6B01G286900 chr2A 645311345 645311918 573 False 551.0 551 84.192 1651 2224 1 chr2A.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 4603 0.747852 GCCACCTCCACTAGCTAGTC 59.252 60.0 23.68 6.32 33.46 2.59 F
1321 5147 0.100682 TTTCTCGCTCCGATCCGAAG 59.899 55.0 0.00 0.00 34.61 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 5471 1.279271 GGGCTACTTCCATATGGCGAT 59.721 52.381 17.58 6.78 34.44 4.58 R
2935 6785 0.899717 GCACAAGCAAATGGAGGGGA 60.900 55.000 0.00 0.00 41.58 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 79 3.199946 AGATGACCGTCATGGGTAACATT 59.800 43.478 18.84 0.00 44.64 2.71
86 95 2.203584 ACATTGGCTTCCTCCTCATCT 58.796 47.619 0.00 0.00 0.00 2.90
91 100 3.237746 TGGCTTCCTCCTCATCTAGATG 58.762 50.000 24.32 24.32 40.09 2.90
102 111 5.092968 CCTCATCTAGATGAAGGGAATCCT 58.907 45.833 30.28 0.00 46.10 3.24
119 128 8.606830 AGGGAATCCTAAATATACATTGACCTC 58.393 37.037 0.00 0.00 42.75 3.85
176 3979 8.415553 CAATTGCTGGAATAGAAACATCCAATA 58.584 33.333 0.00 0.00 42.41 1.90
177 3980 7.953005 TTGCTGGAATAGAAACATCCAATAA 57.047 32.000 0.00 0.00 42.41 1.40
178 3981 8.537728 TTGCTGGAATAGAAACATCCAATAAT 57.462 30.769 0.00 0.00 42.41 1.28
179 3982 9.639563 TTGCTGGAATAGAAACATCCAATAATA 57.360 29.630 0.00 0.00 42.41 0.98
180 3983 9.639563 TGCTGGAATAGAAACATCCAATAATAA 57.360 29.630 0.00 0.00 42.41 1.40
239 4042 1.832167 GCCAAGGGACAAGCCACAA 60.832 57.895 0.00 0.00 38.95 3.33
331 4134 3.640029 CAGAAAATCCCCCTTGATGGATG 59.360 47.826 0.00 0.00 40.50 3.51
571 4375 2.028876 GCACAGTACACCCCACTTTTT 58.971 47.619 0.00 0.00 0.00 1.94
712 4516 5.068723 CCTGGAAAGAAGCTATAGTACGGAA 59.931 44.000 0.84 0.00 0.00 4.30
769 4573 3.832643 GAGATGACTCGCTTCATTTCG 57.167 47.619 0.76 0.00 36.30 3.46
770 4574 3.439293 GAGATGACTCGCTTCATTTCGA 58.561 45.455 0.76 0.00 36.30 3.71
785 4589 3.272334 CGATAAGCGGCTGCCACC 61.272 66.667 20.29 8.89 44.31 4.61
799 4603 0.747852 GCCACCTCCACTAGCTAGTC 59.252 60.000 23.68 6.32 33.46 2.59
812 4616 4.951094 ACTAGCTAGTCGAGTTCAAGGAAT 59.049 41.667 20.95 0.00 0.00 3.01
813 4617 4.379339 AGCTAGTCGAGTTCAAGGAATC 57.621 45.455 0.00 0.00 0.00 2.52
840 4651 2.730524 GGGCAGCTCAGTCTCCTCC 61.731 68.421 0.00 0.00 0.00 4.30
974 4789 2.919043 GGCCATCCCCGTCTTCAT 59.081 61.111 0.00 0.00 0.00 2.57
999 4814 1.307309 CATCCCTGCCACATCCCAA 59.693 57.895 0.00 0.00 0.00 4.12
1089 4915 4.308458 CCTCCCACGGTGCGAACA 62.308 66.667 1.68 0.00 0.00 3.18
1101 4927 1.532868 GTGCGAACACAGCTCAAGATT 59.467 47.619 0.00 0.00 46.61 2.40
1181 5007 4.475345 CTCTCTAGTAGTGCCCAACCTAT 58.525 47.826 0.00 0.00 0.00 2.57
1193 5019 5.128827 GTGCCCAACCTATATGCTATAGCTA 59.871 44.000 24.61 14.62 42.66 3.32
1194 5020 5.363868 TGCCCAACCTATATGCTATAGCTAG 59.636 44.000 24.61 17.05 42.66 3.42
1298 5124 4.290722 ACAAGAAGAAGGATCCAGGATTGT 59.709 41.667 15.82 13.32 0.00 2.71
1321 5147 0.100682 TTTCTCGCTCCGATCCGAAG 59.899 55.000 0.00 0.00 34.61 3.79
1333 5159 1.488705 ATCCGAAGAACCACTGGGCA 61.489 55.000 0.00 0.00 37.90 5.36
1337 5163 1.228367 AAGAACCACTGGGCAGCAG 60.228 57.895 0.00 0.00 37.90 4.24
1338 5164 3.368571 GAACCACTGGGCAGCAGC 61.369 66.667 0.00 0.00 37.90 5.25
1339 5165 3.857309 GAACCACTGGGCAGCAGCT 62.857 63.158 0.00 0.00 41.70 4.24
1340 5166 4.655647 ACCACTGGGCAGCAGCTG 62.656 66.667 18.93 18.93 41.70 4.24
1343 5169 4.031129 ACTGGGCAGCAGCTGAGG 62.031 66.667 27.39 13.61 41.70 3.86
1344 5170 3.714001 CTGGGCAGCAGCTGAGGA 61.714 66.667 27.39 7.04 41.70 3.71
1346 5172 2.438075 GGGCAGCAGCTGAGGAAG 60.438 66.667 27.39 0.00 41.70 3.46
1387 5216 3.580022 TGCTTCTTCTCAAGATCTGGTCA 59.420 43.478 0.00 0.00 37.38 4.02
1425 5257 2.894879 CGAATCGGGATGCCGCAA 60.895 61.111 22.35 4.91 0.00 4.85
1442 5274 2.680841 CGCAATAATCCACGGGAAGAAA 59.319 45.455 0.00 0.00 34.34 2.52
2302 6149 3.046087 CCTCTGCACACACCAGCG 61.046 66.667 0.00 0.00 0.00 5.18
2752 6602 5.576337 TTGATTTTCAGTTCTTCTCGTCG 57.424 39.130 0.00 0.00 0.00 5.12
2800 6650 2.017049 ACCTTTTGATGATAGCGGCAC 58.983 47.619 1.45 0.00 0.00 5.01
2899 6749 6.867550 AGCTTAGGCAGATTAATGTTTTTCC 58.132 36.000 0.00 0.00 41.70 3.13
2901 6751 6.127338 GCTTAGGCAGATTAATGTTTTTCCCT 60.127 38.462 0.00 0.00 38.54 4.20
2909 6759 9.709495 CAGATTAATGTTTTTCCCTCAAATCAA 57.291 29.630 0.00 0.00 0.00 2.57
2932 6782 5.698741 TGTCATCTCTTGTCCACCATTAT 57.301 39.130 0.00 0.00 0.00 1.28
2935 6785 6.947733 TGTCATCTCTTGTCCACCATTATTTT 59.052 34.615 0.00 0.00 0.00 1.82
2938 6793 5.261216 TCTCTTGTCCACCATTATTTTCCC 58.739 41.667 0.00 0.00 0.00 3.97
2945 6800 4.015730 TCCACCATTATTTTCCCCTCCATT 60.016 41.667 0.00 0.00 0.00 3.16
2974 6829 3.193267 TGCTTCAATACTTGCCCATGTTC 59.807 43.478 0.00 0.00 0.00 3.18
2980 6835 1.636148 ACTTGCCCATGTTCAGCAAT 58.364 45.000 9.29 0.71 44.84 3.56
3041 6896 3.242252 CCCGTGTGCAAAATTTTGTTCAC 60.242 43.478 29.02 29.02 40.24 3.18
3047 6902 4.328712 GTGCAAAATTTTGTTCACGGTCTT 59.671 37.500 27.13 0.00 40.24 3.01
3051 6906 8.085296 TGCAAAATTTTGTTCACGGTCTTATAT 58.915 29.630 27.13 0.00 40.24 0.86
3052 6907 9.562583 GCAAAATTTTGTTCACGGTCTTATATA 57.437 29.630 27.13 0.00 40.24 0.86
3261 7117 5.710513 TGATCTTTGGTCAAACTTGATGG 57.289 39.130 0.00 0.00 39.73 3.51
3262 7118 5.384336 TGATCTTTGGTCAAACTTGATGGA 58.616 37.500 0.00 0.00 39.73 3.41
3263 7119 5.474532 TGATCTTTGGTCAAACTTGATGGAG 59.525 40.000 0.00 0.00 39.73 3.86
3264 7120 4.792068 TCTTTGGTCAAACTTGATGGAGT 58.208 39.130 0.00 0.00 39.73 3.85
3265 7121 5.200483 TCTTTGGTCAAACTTGATGGAGTT 58.800 37.500 0.00 0.00 41.44 3.01
3267 7123 5.930837 TTGGTCAAACTTGATGGAGTTTT 57.069 34.783 0.59 0.00 45.05 2.43
3268 7124 5.930837 TGGTCAAACTTGATGGAGTTTTT 57.069 34.783 0.59 0.00 45.05 1.94
3342 7198 7.418025 CGGAATAAAAAGAGACTGAGGGAGTAT 60.418 40.741 0.00 0.00 33.83 2.12
3365 7221 5.836347 TGAGAGATACGAGTTGAATCCATG 58.164 41.667 0.00 0.00 0.00 3.66
3366 7222 5.207110 AGAGATACGAGTTGAATCCATGG 57.793 43.478 4.97 4.97 0.00 3.66
3408 7279 9.700831 ATTAATAATTCAGAAAAGCTACCTGGT 57.299 29.630 4.05 4.05 0.00 4.00
3410 7281 2.859165 TCAGAAAAGCTACCTGGTGG 57.141 50.000 10.23 7.90 39.83 4.61
3411 7282 1.351017 TCAGAAAAGCTACCTGGTGGG 59.649 52.381 10.23 3.40 41.89 4.61
3412 7283 1.351017 CAGAAAAGCTACCTGGTGGGA 59.649 52.381 10.23 0.00 38.76 4.37
3420 7291 2.088104 TACCTGGTGGGAGAGCATAG 57.912 55.000 10.23 0.00 38.76 2.23
3421 7292 1.341156 ACCTGGTGGGAGAGCATAGC 61.341 60.000 0.00 0.00 38.76 2.97
3422 7293 1.340399 CCTGGTGGGAGAGCATAGCA 61.340 60.000 0.00 0.00 37.23 3.49
3423 7294 0.763652 CTGGTGGGAGAGCATAGCAT 59.236 55.000 0.00 0.00 0.00 3.79
3427 7307 2.421952 GGTGGGAGAGCATAGCATTTCA 60.422 50.000 0.00 0.00 0.00 2.69
3431 7311 3.696051 GGGAGAGCATAGCATTTCAAACA 59.304 43.478 0.00 0.00 0.00 2.83
3442 7322 9.158233 CATAGCATTTCAAACATTTTTCCTGAT 57.842 29.630 0.00 0.00 0.00 2.90
3444 7324 8.767478 AGCATTTCAAACATTTTTCCTGATAG 57.233 30.769 0.00 0.00 0.00 2.08
3464 7344 7.658261 TGATAGTTTTAGTCATATCGAGGGTG 58.342 38.462 0.00 0.00 0.00 4.61
3465 7345 7.504574 TGATAGTTTTAGTCATATCGAGGGTGA 59.495 37.037 0.00 0.00 0.00 4.02
3467 7347 5.421056 AGTTTTAGTCATATCGAGGGTGACA 59.579 40.000 21.91 10.71 43.51 3.58
3468 7348 5.515797 TTTAGTCATATCGAGGGTGACAG 57.484 43.478 21.91 0.00 43.51 3.51
3472 7352 4.223032 AGTCATATCGAGGGTGACAGTTTT 59.777 41.667 21.91 5.79 43.51 2.43
3564 7467 3.815401 CCCTTGACTCACTAAAACTGTGG 59.185 47.826 0.00 0.00 36.21 4.17
3570 7473 6.119536 TGACTCACTAAAACTGTGGTCAAAT 58.880 36.000 12.26 0.00 39.81 2.32
3587 7491 3.873361 TCAAATCGTTTGCAAATGCCAAA 59.127 34.783 23.79 9.40 40.43 3.28
3618 7522 2.349627 CGAACGGTCGCTAGATAAGAGG 60.350 54.545 11.19 0.00 41.08 3.69
3625 7529 2.177233 TCGCTAGATAAGAGGGGTCCTT 59.823 50.000 0.00 0.00 31.76 3.36
3635 7539 3.542604 AGAGGGGTCCTTGTAATTTCCT 58.457 45.455 0.00 0.00 31.76 3.36
3636 7540 4.706616 AGAGGGGTCCTTGTAATTTCCTA 58.293 43.478 0.00 0.00 31.76 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.526888 ACGAGAGTCCCCATCTTACA 57.473 50.000 0.00 0.00 44.19 2.41
70 79 3.116977 TCATCTAGATGAGGAGGAAGCCA 60.117 47.826 27.93 4.94 42.42 4.75
91 100 9.232473 GGTCAATGTATATTTAGGATTCCCTTC 57.768 37.037 0.00 0.00 40.78 3.46
102 111 7.050970 ACGCTCTGAGGTCAATGTATATTTA 57.949 36.000 6.83 0.00 0.00 1.40
119 128 2.579787 CGGCTTACGGACGCTCTG 60.580 66.667 0.00 0.00 40.63 3.35
195 3998 1.025041 GCGAGGAATTTGGATGGGTC 58.975 55.000 0.00 0.00 0.00 4.46
362 4165 1.344763 AGCTCTCGTGTAGGCAAGTTT 59.655 47.619 0.00 0.00 0.00 2.66
458 4261 2.049063 AGCGCTCGTCCTTGTCAC 60.049 61.111 2.64 0.00 0.00 3.67
459 4262 2.258591 GAGCGCTCGTCCTTGTCA 59.741 61.111 23.61 0.00 0.00 3.58
461 4264 2.049063 GTGAGCGCTCGTCCTTGT 60.049 61.111 30.75 0.00 0.00 3.16
462 4265 1.446792 ATGTGAGCGCTCGTCCTTG 60.447 57.895 30.75 0.00 0.00 3.61
463 4266 1.446792 CATGTGAGCGCTCGTCCTT 60.447 57.895 30.75 16.49 0.00 3.36
513 4316 2.174854 GCTTTATAAAGGGCAGAGGGGA 59.825 50.000 23.37 0.00 36.53 4.81
759 4563 1.599542 AGCCGCTTATCGAAATGAAGC 59.400 47.619 12.25 12.25 41.75 3.86
765 4569 1.078778 TGGCAGCCGCTTATCGAAA 60.079 52.632 7.03 0.00 41.67 3.46
769 4573 1.889573 GAGGTGGCAGCCGCTTATC 60.890 63.158 24.40 15.65 38.60 1.75
770 4574 2.190578 GAGGTGGCAGCCGCTTAT 59.809 61.111 24.40 11.00 38.60 1.73
776 4580 2.586792 CTAGTGGAGGTGGCAGCC 59.413 66.667 13.95 3.66 0.00 4.85
799 4603 4.116747 AGCTACAGATTCCTTGAACTCG 57.883 45.455 0.00 0.00 0.00 4.18
971 4786 0.479815 GGCAGGGATGGATGGAATGA 59.520 55.000 0.00 0.00 0.00 2.57
974 4789 1.213619 TGTGGCAGGGATGGATGGAA 61.214 55.000 0.00 0.00 0.00 3.53
1131 4957 4.828387 TCCACCTATGTATGCGTGTATGTA 59.172 41.667 0.00 0.00 0.00 2.29
1298 5124 0.460284 GGATCGGAGCGAGAAAGCAA 60.460 55.000 0.00 0.00 39.91 3.91
1321 5147 3.368571 GCTGCTGCCCAGTGGTTC 61.369 66.667 8.74 0.00 43.71 3.62
1338 5164 5.146010 ACTACAAAAGAGAGCTTCCTCAG 57.854 43.478 5.32 0.00 40.68 3.35
1339 5165 5.300752 CAACTACAAAAGAGAGCTTCCTCA 58.699 41.667 5.32 0.00 40.68 3.86
1340 5166 4.153296 GCAACTACAAAAGAGAGCTTCCTC 59.847 45.833 0.00 0.00 38.42 3.71
1343 5169 5.447573 CAAGCAACTACAAAAGAGAGCTTC 58.552 41.667 0.00 0.00 37.71 3.86
1344 5170 4.261363 GCAAGCAACTACAAAAGAGAGCTT 60.261 41.667 0.00 0.00 39.13 3.74
1346 5172 3.251972 AGCAAGCAACTACAAAAGAGAGC 59.748 43.478 0.00 0.00 0.00 4.09
1347 5173 5.238214 AGAAGCAAGCAACTACAAAAGAGAG 59.762 40.000 0.00 0.00 0.00 3.20
1348 5174 5.126067 AGAAGCAAGCAACTACAAAAGAGA 58.874 37.500 0.00 0.00 0.00 3.10
1387 5216 2.425683 GCCAACTAGAGGAGAGGAGGAT 60.426 54.545 9.67 0.00 0.00 3.24
1425 5257 6.448369 TGGATATTTCTTCCCGTGGATTAT 57.552 37.500 0.00 0.00 31.87 1.28
1442 5274 7.262990 ACTCCATGTATGTATGCTTGGATAT 57.737 36.000 14.69 6.87 42.62 1.63
1582 5420 1.373497 CGACGCAGAAGCAGAAGGT 60.373 57.895 0.00 0.00 42.27 3.50
1633 5471 1.279271 GGGCTACTTCCATATGGCGAT 59.721 52.381 17.58 6.78 34.44 4.58
1719 5563 1.363744 GAACATGTGCTCCTTCTCCG 58.636 55.000 0.00 0.00 0.00 4.63
2739 6589 2.496111 AGTGAGACGACGAGAAGAACT 58.504 47.619 0.00 0.00 0.00 3.01
2800 6650 3.641436 GGGGCAAATGTTAAATCCCTAGG 59.359 47.826 0.06 0.06 34.28 3.02
2899 6749 6.183360 GGACAAGAGATGACATTGATTTGAGG 60.183 42.308 8.80 0.00 0.00 3.86
2901 6751 6.149973 GTGGACAAGAGATGACATTGATTTGA 59.850 38.462 8.80 0.00 0.00 2.69
2909 6759 4.581309 AATGGTGGACAAGAGATGACAT 57.419 40.909 0.00 0.00 0.00 3.06
2932 6782 2.368221 CACAAGCAAATGGAGGGGAAAA 59.632 45.455 0.00 0.00 0.00 2.29
2935 6785 0.899717 GCACAAGCAAATGGAGGGGA 60.900 55.000 0.00 0.00 41.58 4.81
2938 6793 1.614903 TGAAGCACAAGCAAATGGAGG 59.385 47.619 0.00 0.00 45.49 4.30
2974 6829 4.279922 TGAAATGGGCATGAGATATTGCTG 59.720 41.667 0.00 0.00 38.88 4.41
2980 6835 8.550585 TCATATGTATGAAATGGGCATGAGATA 58.449 33.333 1.90 0.00 39.58 1.98
3019 6874 2.932614 TGAACAAAATTTTGCACACGGG 59.067 40.909 26.94 5.13 41.79 5.28
3318 7174 8.478877 TCATACTCCCTCAGTCTCTTTTTATTC 58.521 37.037 0.00 0.00 36.43 1.75
3329 7185 4.693566 CGTATCTCTCATACTCCCTCAGTC 59.306 50.000 0.00 0.00 36.43 3.51
3342 7198 5.221322 CCATGGATTCAACTCGTATCTCTCA 60.221 44.000 5.56 0.00 0.00 3.27
3365 7221 5.897377 ATTAATGTGTAGTGCTGGTTTCC 57.103 39.130 0.00 0.00 0.00 3.13
3366 7222 9.503427 GAATTATTAATGTGTAGTGCTGGTTTC 57.497 33.333 0.00 0.00 0.00 2.78
3403 7274 1.340399 TGCTATGCTCTCCCACCAGG 61.340 60.000 0.00 0.00 0.00 4.45
3408 7279 3.650281 TTGAAATGCTATGCTCTCCCA 57.350 42.857 0.00 0.00 0.00 4.37
3410 7281 4.970662 TGTTTGAAATGCTATGCTCTCC 57.029 40.909 0.00 0.00 0.00 3.71
3411 7282 7.823149 AAAATGTTTGAAATGCTATGCTCTC 57.177 32.000 0.00 0.00 0.00 3.20
3412 7283 7.332678 GGAAAAATGTTTGAAATGCTATGCTCT 59.667 33.333 0.00 0.00 0.00 4.09
3413 7284 7.332678 AGGAAAAATGTTTGAAATGCTATGCTC 59.667 33.333 0.00 0.00 0.00 4.26
3414 7285 7.118680 CAGGAAAAATGTTTGAAATGCTATGCT 59.881 33.333 0.00 0.00 0.00 3.79
3415 7286 7.118101 TCAGGAAAAATGTTTGAAATGCTATGC 59.882 33.333 0.00 0.00 0.00 3.14
3418 7289 9.859427 CTATCAGGAAAAATGTTTGAAATGCTA 57.141 29.630 0.00 0.00 0.00 3.49
3419 7290 8.370182 ACTATCAGGAAAAATGTTTGAAATGCT 58.630 29.630 0.00 0.00 0.00 3.79
3420 7291 8.538409 ACTATCAGGAAAAATGTTTGAAATGC 57.462 30.769 0.00 0.00 0.00 3.56
3442 7322 6.604396 TGTCACCCTCGATATGACTAAAACTA 59.396 38.462 18.90 1.57 42.65 2.24
3444 7324 5.657474 TGTCACCCTCGATATGACTAAAAC 58.343 41.667 18.90 0.56 42.65 2.43
3496 7376 5.884792 CCTGTCATTTTCTAGAATGAAGGCT 59.115 40.000 5.89 0.00 44.92 4.58
3498 7378 7.175641 ACAACCTGTCATTTTCTAGAATGAAGG 59.824 37.037 21.14 21.14 44.92 3.46
3499 7379 8.103948 ACAACCTGTCATTTTCTAGAATGAAG 57.896 34.615 5.89 8.16 44.92 3.02
3500 7380 8.463930 AACAACCTGTCATTTTCTAGAATGAA 57.536 30.769 5.89 0.00 44.92 2.57
3501 7381 7.939039 AGAACAACCTGTCATTTTCTAGAATGA 59.061 33.333 5.89 5.33 42.18 2.57
3502 7382 8.019669 CAGAACAACCTGTCATTTTCTAGAATG 58.980 37.037 5.89 2.75 38.16 2.67
3516 7418 4.589908 ACAGTTTCTTCAGAACAACCTGT 58.410 39.130 0.00 0.00 35.71 4.00
3550 7453 5.120399 ACGATTTGACCACAGTTTTAGTGA 58.880 37.500 0.00 0.00 39.30 3.41
3551 7454 5.418310 ACGATTTGACCACAGTTTTAGTG 57.582 39.130 0.00 0.00 36.76 2.74
3564 7467 2.799412 TGGCATTTGCAAACGATTTGAC 59.201 40.909 15.41 11.34 43.26 3.18
3570 7473 1.576356 GGTTTGGCATTTGCAAACGA 58.424 45.000 15.41 0.00 44.36 3.85
3608 7512 7.072076 GGAAATTACAAGGACCCCTCTTATCTA 59.928 40.741 0.00 0.00 30.89 1.98
3618 7522 7.121315 GCATGATATAGGAAATTACAAGGACCC 59.879 40.741 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.