Multiple sequence alignment - TraesCS6B01G286400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G286400 chr6B 100.000 8781 0 0 1 8781 516074219 516082999 0.000000e+00 16216.0
1 TraesCS6B01G286400 chr6A 93.591 5773 234 62 1 5722 481736148 481741835 0.000000e+00 8486.0
2 TraesCS6B01G286400 chr6A 90.973 1706 84 29 6812 8465 481742907 481744594 0.000000e+00 2233.0
3 TraesCS6B01G286400 chr6A 87.500 360 39 3 6034 6393 481742120 481742473 2.280000e-110 411.0
4 TraesCS6B01G286400 chr6A 88.732 284 26 5 8492 8775 481744594 481744871 8.440000e-90 342.0
5 TraesCS6B01G286400 chr6A 89.844 256 17 3 5725 5971 481741871 481742126 3.960000e-83 320.0
6 TraesCS6B01G286400 chr6A 85.333 225 25 6 6472 6695 481742626 481742843 8.870000e-55 226.0
7 TraesCS6B01G286400 chr6D 95.897 2608 69 18 193 2780 341644729 341647318 0.000000e+00 4189.0
8 TraesCS6B01G286400 chr6D 91.759 2985 161 38 2780 5726 341647401 341650338 0.000000e+00 4071.0
9 TraesCS6B01G286400 chr6D 93.163 863 44 5 7228 8084 341651885 341652738 0.000000e+00 1253.0
10 TraesCS6B01G286400 chr6D 93.428 563 33 3 5903 6465 341650506 341651064 0.000000e+00 832.0
11 TraesCS6B01G286400 chr6D 87.482 695 63 9 8090 8774 341653150 341653830 0.000000e+00 780.0
12 TraesCS6B01G286400 chr6D 92.184 435 24 4 6812 7242 341651430 341651858 2.710000e-169 606.0
13 TraesCS6B01G286400 chr6D 92.308 195 12 2 6 197 341637721 341637915 3.120000e-69 274.0
14 TraesCS6B01G286400 chr6D 88.158 228 19 4 6469 6695 341651146 341651366 1.880000e-66 265.0
15 TraesCS6B01G286400 chr6D 83.806 247 35 4 8531 8774 461385229 461385473 6.860000e-56 230.0
16 TraesCS6B01G286400 chr6D 90.345 145 6 3 5725 5869 341650368 341650504 5.410000e-42 183.0
17 TraesCS6B01G286400 chr6D 100.000 38 0 0 6776 6813 341651363 341651400 4.400000e-08 71.3
18 TraesCS6B01G286400 chr1B 87.931 232 27 1 8543 8774 123953329 123953559 1.120000e-68 272.0
19 TraesCS6B01G286400 chr7D 89.238 223 15 6 978 1191 237610144 237610366 4.040000e-68 270.0
20 TraesCS6B01G286400 chr7A 89.238 223 15 6 978 1191 253427900 253428122 4.040000e-68 270.0
21 TraesCS6B01G286400 chr7B 88.789 223 16 6 978 1191 215001195 215001417 1.880000e-66 265.0
22 TraesCS6B01G286400 chr7B 88.304 171 20 0 1001 1171 18506211 18506041 1.160000e-48 206.0
23 TraesCS6B01G286400 chr7B 91.346 104 7 2 6684 6785 465970487 465970590 3.310000e-29 141.0
24 TraesCS6B01G286400 chr7B 97.674 43 1 0 5968 6010 639385350 639385392 3.400000e-09 75.0
25 TraesCS6B01G286400 chr5D 91.667 192 13 3 1000 1188 391730413 391730604 6.760000e-66 263.0
26 TraesCS6B01G286400 chr5D 92.929 99 7 0 6689 6787 51699301 51699399 2.550000e-30 145.0
27 TraesCS6B01G286400 chr5B 91.146 192 14 3 1000 1188 471852439 471852630 3.150000e-64 257.0
28 TraesCS6B01G286400 chr5B 86.885 122 12 3 6662 6779 667511091 667511212 5.530000e-27 134.0
29 TraesCS6B01G286400 chr5B 84.559 136 16 5 6648 6779 670860058 670859924 7.150000e-26 130.0
30 TraesCS6B01G286400 chr5B 84.932 73 5 5 5968 6040 368666549 368666483 1.580000e-07 69.4
31 TraesCS6B01G286400 chr5A 91.146 192 14 3 1000 1188 494863147 494863338 3.150000e-64 257.0
32 TraesCS6B01G286400 chr2B 85.477 241 35 0 8534 8774 45740950 45740710 1.460000e-62 252.0
33 TraesCS6B01G286400 chr2B 83.256 215 34 2 8562 8775 444613015 444613228 6.950000e-46 196.0
34 TraesCS6B01G286400 chr1D 84.979 233 32 3 8543 8774 78966822 78967052 5.300000e-57 233.0
35 TraesCS6B01G286400 chr3D 84.322 236 30 7 8542 8774 67054848 67055079 3.190000e-54 224.0
36 TraesCS6B01G286400 chr3B 84.729 203 29 2 8580 8781 56343223 56343424 1.490000e-47 202.0
37 TraesCS6B01G286400 chr3B 90.654 107 8 2 6685 6790 804794116 804794011 3.310000e-29 141.0
38 TraesCS6B01G286400 chr3B 92.683 41 3 0 5968 6008 666445492 666445452 9.520000e-05 60.2
39 TraesCS6B01G286400 chr3B 100.000 28 0 0 8397 8424 5852507 5852480 1.600000e-02 52.8
40 TraesCS6B01G286400 chr3A 80.800 250 41 7 8535 8781 22549242 22549487 1.160000e-43 189.0
41 TraesCS6B01G286400 chr3A 91.429 105 6 3 6694 6796 520437991 520438094 3.310000e-29 141.0
42 TraesCS6B01G286400 chr2A 93.684 95 6 0 6690 6784 68249096 68249002 9.190000e-30 143.0
43 TraesCS6B01G286400 chr2A 93.878 49 1 2 5960 6008 459095820 459095866 1.220000e-08 73.1
44 TraesCS6B01G286400 chr2A 93.478 46 3 0 5966 6011 153713201 153713156 1.580000e-07 69.4
45 TraesCS6B01G286400 chr2A 100.000 28 0 0 8397 8424 89733564 89733591 1.600000e-02 52.8
46 TraesCS6B01G286400 chr4D 94.505 91 5 0 6691 6781 16403449 16403539 3.310000e-29 141.0
47 TraesCS6B01G286400 chr4D 91.176 102 7 2 6694 6795 98447967 98448066 4.280000e-28 137.0
48 TraesCS6B01G286400 chr1A 95.122 41 2 0 5968 6008 259202260 259202220 2.050000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G286400 chr6B 516074219 516082999 8780 False 16216.000000 16216 100.000000 1 8781 1 chr6B.!!$F1 8780
1 TraesCS6B01G286400 chr6A 481736148 481744871 8723 False 2003.000000 8486 89.328833 1 8775 6 chr6A.!!$F1 8774
2 TraesCS6B01G286400 chr6D 341644729 341653830 9101 False 1361.144444 4189 92.490667 193 8774 9 chr6D.!!$F3 8581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 1001 0.756442 TGCTTGCTTGCTTGGAAGGT 60.756 50.000 11.20 0.00 36.18 3.50 F
2001 2030 0.470341 CGAGATCCTTCCCCCTTTCC 59.530 60.000 0.00 0.00 0.00 3.13 F
2525 2558 0.978151 TATTGTGCACCCGTGGTAGT 59.022 50.000 15.69 0.00 32.11 2.73 F
3481 3617 0.614812 AGGAATTTTGGGCCACATGC 59.385 50.000 5.23 0.00 40.16 4.06 F
4688 4835 3.009275 CCCCCATGGCATGTCTCA 58.991 61.111 24.80 0.00 0.00 3.27 F
5694 5863 1.278985 TGGTATGGTTCAGTGGCTCTG 59.721 52.381 10.23 10.23 44.85 3.35 F
6952 7331 0.402121 GGAGCAGGTGGAGGAACTTT 59.598 55.000 0.00 0.00 41.55 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 2536 0.037590 ACCACGGGTGCACAATACAT 59.962 50.000 20.43 0.00 32.98 2.29 R
3277 3411 1.535462 CGGTTAACCTGGCAAAGAGTG 59.465 52.381 22.12 0.00 0.00 3.51 R
3809 3947 2.031930 CCAATGTTTTTGTTGTGCTGCC 59.968 45.455 0.00 0.00 0.00 4.85 R
5098 5247 0.601311 ACCTCTGAGTTCGCTGCAAC 60.601 55.000 3.66 3.76 0.00 4.17 R
5839 6077 1.108776 TAAACCGAGCACCGCTAGAT 58.891 50.000 0.00 0.00 39.88 1.98 R
7002 7381 0.589479 CACACACACGCACACACATG 60.589 55.000 0.00 0.00 0.00 3.21 R
8605 9488 0.035056 AAACTTGCCATCCTCGGAGG 60.035 55.000 18.25 18.25 36.46 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.462500 CGGATTCCTCAAATCTCAGTCATAT 58.538 40.000 0.30 0.00 42.93 1.78
40 41 9.416794 CTCAGTCATATGTATTCATAGTTGGAC 57.583 37.037 1.90 4.05 39.49 4.02
48 49 7.389803 TGTATTCATAGTTGGACCAACATTG 57.610 36.000 33.44 27.98 45.66 2.82
64 65 5.049060 CCAACATTGACCATTTGTAAGACGA 60.049 40.000 0.00 0.00 0.00 4.20
85 86 9.388506 AGACGAAATCAGATAAATCAATTGAGT 57.611 29.630 14.54 8.63 0.00 3.41
157 158 8.770010 AAAGTACCACTAGTATCTAAGAGCAT 57.230 34.615 0.00 0.00 32.28 3.79
159 160 8.851541 AGTACCACTAGTATCTAAGAGCATAC 57.148 38.462 0.00 0.00 32.28 2.39
215 219 5.010012 CCTTTTGAGTTAGGATTGTGCAACT 59.990 40.000 0.00 0.00 33.25 3.16
218 222 6.801539 TTGAGTTAGGATTGTGCAACTTAG 57.198 37.500 0.00 0.00 38.04 2.18
229 240 6.827586 TTGTGCAACTTAGGGGTTAATTAG 57.172 37.500 0.00 0.00 38.04 1.73
232 243 4.947388 TGCAACTTAGGGGTTAATTAGCTG 59.053 41.667 0.00 0.00 0.00 4.24
347 358 1.065109 GCACCAAACGAACCGCTTT 59.935 52.632 0.00 0.00 0.00 3.51
563 574 3.442167 GCGCACATGCACCCATCA 61.442 61.111 0.30 0.00 42.21 3.07
670 681 4.011517 CCGTGGTAACTGCCCCGT 62.012 66.667 0.00 0.00 37.61 5.28
709 720 4.647399 CCCTCCTTTAAAGTCGAGAGAGAT 59.353 45.833 18.00 0.00 43.49 2.75
851 864 2.026822 CCTCCCGGCTCATTATATGCTT 60.027 50.000 0.00 0.00 0.00 3.91
983 1001 0.756442 TGCTTGCTTGCTTGGAAGGT 60.756 50.000 11.20 0.00 36.18 3.50
1017 1038 1.935931 CATGGGGAGGGGAAGGGTT 60.936 63.158 0.00 0.00 0.00 4.11
1197 1218 3.429822 GCGCCGGGTATACACATACATAT 60.430 47.826 2.18 0.00 39.09 1.78
1590 1616 6.831353 AGTTAATTGCTCAGCTAGTAGAGAGA 59.169 38.462 18.81 5.65 33.74 3.10
1611 1637 4.653341 AGATGGGATTGTTTTTGTGTGGAA 59.347 37.500 0.00 0.00 0.00 3.53
1630 1656 2.544844 ACAATAGAGAAGTCGGGGGA 57.455 50.000 0.00 0.00 0.00 4.81
1788 1816 1.317613 TGTGTCATGAGTTGGTTGCC 58.682 50.000 0.00 0.00 0.00 4.52
1961 1989 9.762381 TTTTGCCTATAGGGAGAATCTTTAAAA 57.238 29.630 20.58 8.63 36.70 1.52
2000 2029 1.497161 TCGAGATCCTTCCCCCTTTC 58.503 55.000 0.00 0.00 0.00 2.62
2001 2030 0.470341 CGAGATCCTTCCCCCTTTCC 59.530 60.000 0.00 0.00 0.00 3.13
2070 2099 7.559897 TGTCTTGGTTCATTTTCTCTAAGGTTT 59.440 33.333 0.00 0.00 0.00 3.27
2071 2100 8.076781 GTCTTGGTTCATTTTCTCTAAGGTTTC 58.923 37.037 0.00 0.00 0.00 2.78
2095 2124 3.642141 TCATGTATCCACAGTCTGGCTA 58.358 45.455 4.53 0.00 40.39 3.93
2136 2168 9.588096 AAAAGTAACTTCACCATATTTCCTTCT 57.412 29.630 0.00 0.00 0.00 2.85
2137 2169 9.588096 AAAGTAACTTCACCATATTTCCTTCTT 57.412 29.630 0.00 0.00 0.00 2.52
2138 2170 8.794335 AGTAACTTCACCATATTTCCTTCTTC 57.206 34.615 0.00 0.00 0.00 2.87
2334 2367 2.113860 TGCTTGCTCTCCCATGTTAC 57.886 50.000 0.00 0.00 0.00 2.50
2346 2379 3.049206 CCCATGTTACTTTTGTGTTGCG 58.951 45.455 0.00 0.00 0.00 4.85
2361 2394 8.555166 TTTGTGTTGCGATTTTCTTTTACTAG 57.445 30.769 0.00 0.00 0.00 2.57
2362 2395 6.140110 TGTGTTGCGATTTTCTTTTACTAGC 58.860 36.000 0.00 0.00 0.00 3.42
2375 2408 3.984508 TTACTAGCGTGGCAGATCTAC 57.015 47.619 0.00 0.00 0.00 2.59
2503 2536 8.841300 TGGCACTAATATTTTCATTTGCGTATA 58.159 29.630 0.00 0.00 0.00 1.47
2513 2546 7.906611 TTTCATTTGCGTATATGTATTGTGC 57.093 32.000 4.10 0.00 0.00 4.57
2516 2549 4.804608 TTGCGTATATGTATTGTGCACC 57.195 40.909 15.69 0.00 0.00 5.01
2525 2558 0.978151 TATTGTGCACCCGTGGTAGT 59.022 50.000 15.69 0.00 32.11 2.73
2538 2571 5.009010 ACCCGTGGTAGTAAATCGTATACTG 59.991 44.000 0.56 0.00 35.34 2.74
2539 2572 5.239306 CCCGTGGTAGTAAATCGTATACTGA 59.761 44.000 0.56 0.79 35.34 3.41
2540 2573 6.072286 CCCGTGGTAGTAAATCGTATACTGAT 60.072 42.308 0.56 3.16 35.34 2.90
2541 2574 7.020010 CCGTGGTAGTAAATCGTATACTGATC 58.980 42.308 0.56 0.00 35.34 2.92
2684 2717 2.943653 CGTCTTTGTTCCGGTGGC 59.056 61.111 0.00 0.00 0.00 5.01
2717 2750 4.221482 GGAGCATTCACCTTTGGATCTTTT 59.779 41.667 0.00 0.00 0.00 2.27
2725 2758 7.181569 TCACCTTTGGATCTTTTCTTTTGTT 57.818 32.000 0.00 0.00 0.00 2.83
2726 2759 7.264947 TCACCTTTGGATCTTTTCTTTTGTTC 58.735 34.615 0.00 0.00 0.00 3.18
2727 2760 7.124147 TCACCTTTGGATCTTTTCTTTTGTTCT 59.876 33.333 0.00 0.00 0.00 3.01
2728 2761 7.765819 CACCTTTGGATCTTTTCTTTTGTTCTT 59.234 33.333 0.00 0.00 0.00 2.52
2729 2762 7.765819 ACCTTTGGATCTTTTCTTTTGTTCTTG 59.234 33.333 0.00 0.00 0.00 3.02
2751 2784 6.844696 TGTACATCACACTTTCTGTTCTTC 57.155 37.500 0.00 0.00 30.04 2.87
2757 2790 7.970614 ACATCACACTTTCTGTTCTTCTTTTTC 59.029 33.333 0.00 0.00 0.00 2.29
2758 2791 7.687941 TCACACTTTCTGTTCTTCTTTTTCT 57.312 32.000 0.00 0.00 0.00 2.52
2759 2792 8.110860 TCACACTTTCTGTTCTTCTTTTTCTT 57.889 30.769 0.00 0.00 0.00 2.52
2760 2793 8.576442 TCACACTTTCTGTTCTTCTTTTTCTTT 58.424 29.630 0.00 0.00 0.00 2.52
2794 2912 1.937223 TGTCTTAGTGCACAACGGTTG 59.063 47.619 21.04 18.81 0.00 3.77
2859 2981 8.022550 TGAAATATTACAAACATGTGTGCTCTG 58.977 33.333 16.26 1.88 32.75 3.35
2995 3117 1.208052 AGTAGATCTGGCATGCACGTT 59.792 47.619 21.36 4.36 0.00 3.99
3017 3139 8.395633 ACGTTTGTTAACTGATATTTAGGATGC 58.604 33.333 7.22 0.00 31.89 3.91
3114 3236 9.625747 TTATCATGTGCTTAGACCATCAAATTA 57.374 29.630 0.00 0.00 0.00 1.40
3115 3237 7.558161 TCATGTGCTTAGACCATCAAATTAG 57.442 36.000 0.00 0.00 0.00 1.73
3118 3240 5.193679 GTGCTTAGACCATCAAATTAGGGT 58.806 41.667 0.00 0.00 35.92 4.34
3122 3244 3.953542 GACCATCAAATTAGGGTCCCT 57.046 47.619 16.73 16.73 43.06 4.20
3152 3283 1.635487 AGGGTGGCTTCATTTCTAGCA 59.365 47.619 0.00 0.00 39.15 3.49
3167 3298 4.521130 TCTAGCACTCTGTGTTAACTGG 57.479 45.455 7.22 0.00 35.75 4.00
3277 3411 7.472543 ACTAAGCATTTACGAAATCCATGTTC 58.527 34.615 0.00 0.00 0.00 3.18
3281 3415 5.739161 GCATTTACGAAATCCATGTTCACTC 59.261 40.000 0.00 0.00 0.00 3.51
3286 3420 4.161333 CGAAATCCATGTTCACTCTTTGC 58.839 43.478 0.00 0.00 0.00 3.68
3335 3470 9.252962 GAAAACATTTCTTTTCTCATGTGACAT 57.747 29.630 0.00 0.00 37.23 3.06
3451 3587 4.868171 CGGTTTCTCATTTTGGAGTATCGA 59.132 41.667 0.00 0.00 36.30 3.59
3472 3608 4.319046 CGACGCATCATAGAGGAATTTTGG 60.319 45.833 0.00 0.00 0.00 3.28
3481 3617 0.614812 AGGAATTTTGGGCCACATGC 59.385 50.000 5.23 0.00 40.16 4.06
3781 3919 8.677300 TCAATGTTTGAAATTCCATAGAGCTAC 58.323 33.333 0.00 0.00 36.59 3.58
3874 4012 6.349944 GCTATAATGCTCAAGATTCCAATGGG 60.350 42.308 0.00 0.00 0.00 4.00
4336 4477 8.831550 GTCCCTTATCTTGAAGAAATGATGTAC 58.168 37.037 0.00 0.00 0.00 2.90
4397 4538 9.959749 GTTGAGTTTAATCAATGTACTGGAAAA 57.040 29.630 0.00 0.00 41.05 2.29
4645 4792 8.807118 TGAATAGCCTTACCATATCTCTGTTAG 58.193 37.037 0.00 0.00 0.00 2.34
4649 4796 7.501844 AGCCTTACCATATCTCTGTTAGTTTC 58.498 38.462 0.00 0.00 0.00 2.78
4688 4835 3.009275 CCCCCATGGCATGTCTCA 58.991 61.111 24.80 0.00 0.00 3.27
4733 4880 9.535170 TTTGAACCTTAATACCATTGGATTGTA 57.465 29.630 10.37 0.00 0.00 2.41
4758 4906 5.483811 TGCTCATCAATCATGCATGTTTTT 58.516 33.333 25.43 14.84 31.70 1.94
4760 4908 7.097834 TGCTCATCAATCATGCATGTTTTTAA 58.902 30.769 25.43 11.78 31.70 1.52
4763 4911 9.146984 CTCATCAATCATGCATGTTTTTAACTT 57.853 29.630 25.43 5.83 31.70 2.66
4812 4960 3.838550 GCGACTTTTGTAATAAGTGCACG 59.161 43.478 12.01 0.00 36.04 5.34
4856 5005 8.125978 TGAAAGCTCTTGGATTCATTATTTGT 57.874 30.769 0.00 0.00 0.00 2.83
4984 5133 9.740239 ACAAACATTATCTTGTGATGCATTATC 57.260 29.630 0.00 0.00 34.52 1.75
5098 5247 2.594214 GCTAAAGGCAAAATTCGAAGCG 59.406 45.455 3.35 0.00 41.35 4.68
5332 5481 5.106157 CCAGACAGCGAAAGGTTCAAATATT 60.106 40.000 0.00 0.00 41.81 1.28
5334 5483 6.306356 CAGACAGCGAAAGGTTCAAATATTTG 59.694 38.462 20.13 20.13 41.81 2.32
5461 5620 5.464965 CGTACCGGAAATATGGAATATGC 57.535 43.478 9.46 0.00 38.94 3.14
5462 5621 4.932799 CGTACCGGAAATATGGAATATGCA 59.067 41.667 9.46 0.00 38.94 3.96
5463 5622 5.584649 CGTACCGGAAATATGGAATATGCAT 59.415 40.000 9.46 3.79 38.94 3.96
5551 5717 2.672961 TCAGAGAACTGCATTACCCG 57.327 50.000 0.00 0.00 43.17 5.28
5572 5738 3.918591 CGCTTAGACTTGCTCTCGTTTTA 59.081 43.478 0.00 0.00 0.00 1.52
5673 5840 3.571828 TCAAATCCATTTGCGGTTTCTGA 59.428 39.130 7.10 0.00 45.06 3.27
5674 5841 4.220382 TCAAATCCATTTGCGGTTTCTGAT 59.780 37.500 7.10 0.00 45.06 2.90
5694 5863 1.278985 TGGTATGGTTCAGTGGCTCTG 59.721 52.381 10.23 10.23 44.85 3.35
5763 5996 3.211045 GTTTGGAGGCTGTACAGAACAA 58.789 45.455 27.08 19.23 37.74 2.83
5809 6047 8.492673 TCTTAGAGCAAATACAACATGTTAGG 57.507 34.615 11.53 2.29 0.00 2.69
5810 6048 7.552687 TCTTAGAGCAAATACAACATGTTAGGG 59.447 37.037 11.53 1.49 0.00 3.53
5811 6049 4.399303 AGAGCAAATACAACATGTTAGGGC 59.601 41.667 11.53 9.35 0.00 5.19
5819 6057 3.265737 ACAACATGTTAGGGCTATGGTGA 59.734 43.478 11.53 0.00 40.96 4.02
5839 6077 1.546476 ACGAAACCAACCTGCAAAACA 59.454 42.857 0.00 0.00 0.00 2.83
5862 6100 1.495951 GCGGTGCTCGGTTTACAAG 59.504 57.895 2.61 0.00 39.69 3.16
5870 6108 5.399013 GTGCTCGGTTTACAAGCATTAATT 58.601 37.500 10.92 0.00 46.73 1.40
5900 6138 5.508567 AGGGAGTTACCTAGTCTAGTTCAC 58.491 45.833 6.15 0.00 39.65 3.18
5901 6139 4.335037 GGGAGTTACCTAGTCTAGTTCACG 59.665 50.000 6.15 0.00 38.98 4.35
5937 6175 8.421249 TGATATGGTCCTTTTCAATTGAAAGT 57.579 30.769 27.52 14.29 43.90 2.66
6089 6331 5.332743 AGTAGGAATTCATGCCAAGGAAAA 58.667 37.500 7.93 0.00 28.40 2.29
6180 6422 1.863454 GCTATGTTGCACATCTCTCGG 59.137 52.381 5.25 0.00 39.88 4.63
6181 6423 2.477825 CTATGTTGCACATCTCTCGGG 58.522 52.381 5.25 0.00 39.88 5.14
6182 6424 0.745845 ATGTTGCACATCTCTCGGGC 60.746 55.000 0.00 0.00 32.38 6.13
6183 6425 2.125552 TTGCACATCTCTCGGGCG 60.126 61.111 0.00 0.00 0.00 6.13
6184 6426 4.819761 TGCACATCTCTCGGGCGC 62.820 66.667 0.00 0.00 0.00 6.53
6223 6465 3.441572 GCTAGGTTGCACATCATTGAGTT 59.558 43.478 0.00 0.00 0.00 3.01
6226 6468 6.183360 GCTAGGTTGCACATCATTGAGTTAAT 60.183 38.462 0.00 0.00 0.00 1.40
6233 6475 6.883756 TGCACATCATTGAGTTAATGGTTCTA 59.116 34.615 7.70 0.00 45.05 2.10
6242 6484 6.237901 TGAGTTAATGGTTCTACAATGCACT 58.762 36.000 0.00 0.00 0.00 4.40
6299 6541 3.796844 GCAACTGCCTTTTGAACTTCTCC 60.797 47.826 0.00 0.00 34.31 3.71
6313 6555 8.579850 TTGAACTTCTCCATTATAAGTTGCAT 57.420 30.769 4.55 0.00 42.06 3.96
6345 6587 7.038658 TCCTAAAAATTCCAACCACCCAATTAG 60.039 37.037 0.00 0.00 0.00 1.73
6362 6604 8.520351 ACCCAATTAGTTGTTACATAAAGAAGC 58.480 33.333 0.00 0.00 33.36 3.86
6473 6821 7.663827 ACAAATCATGGATATTAGTGCATTGG 58.336 34.615 0.00 0.00 0.00 3.16
6490 6838 5.067674 TGCATTGGAAGATTGGCTACATTAC 59.932 40.000 0.00 0.00 0.00 1.89
6558 6906 8.452534 TGAAATTTTCATATTTGCAAGATTGGC 58.547 29.630 7.74 0.00 34.08 4.52
6559 6907 8.570068 AAATTTTCATATTTGCAAGATTGGCT 57.430 26.923 0.00 0.00 0.00 4.75
6560 6908 9.669887 AAATTTTCATATTTGCAAGATTGGCTA 57.330 25.926 0.00 0.00 0.00 3.93
6561 6909 8.652810 ATTTTCATATTTGCAAGATTGGCTAC 57.347 30.769 0.00 0.00 0.00 3.58
6564 6912 7.350744 TCATATTTGCAAGATTGGCTACATT 57.649 32.000 0.00 0.00 0.00 2.71
6565 6913 8.462589 TCATATTTGCAAGATTGGCTACATTA 57.537 30.769 0.00 0.00 0.00 1.90
6566 6914 9.081204 TCATATTTGCAAGATTGGCTACATTAT 57.919 29.630 0.00 0.00 0.00 1.28
6570 6918 8.845413 TTTGCAAGATTGGCTACATTATTTTT 57.155 26.923 0.00 0.00 0.00 1.94
6571 6919 7.830940 TGCAAGATTGGCTACATTATTTTTG 57.169 32.000 0.00 0.00 0.00 2.44
6572 6920 6.313411 TGCAAGATTGGCTACATTATTTTTGC 59.687 34.615 0.00 0.00 37.23 3.68
6573 6921 6.313411 GCAAGATTGGCTACATTATTTTTGCA 59.687 34.615 0.00 0.00 36.83 4.08
6574 6922 7.011669 GCAAGATTGGCTACATTATTTTTGCAT 59.988 33.333 0.00 0.00 36.83 3.96
6700 7048 9.900112 AGATAAGGAATATTACAAGTACTCCCT 57.100 33.333 0.00 0.00 0.00 4.20
6702 7050 6.997942 AGGAATATTACAAGTACTCCCTCC 57.002 41.667 0.00 0.00 0.00 4.30
6703 7051 5.845065 AGGAATATTACAAGTACTCCCTCCC 59.155 44.000 0.00 0.00 0.00 4.30
6704 7052 5.845065 GGAATATTACAAGTACTCCCTCCCT 59.155 44.000 0.00 0.00 0.00 4.20
6705 7053 6.329460 GGAATATTACAAGTACTCCCTCCCTT 59.671 42.308 0.00 0.00 0.00 3.95
6706 7054 6.997942 ATATTACAAGTACTCCCTCCCTTC 57.002 41.667 0.00 0.00 0.00 3.46
6707 7055 4.415224 TTACAAGTACTCCCTCCCTTCT 57.585 45.455 0.00 0.00 0.00 2.85
6708 7056 2.541466 ACAAGTACTCCCTCCCTTCTG 58.459 52.381 0.00 0.00 0.00 3.02
6709 7057 2.111972 ACAAGTACTCCCTCCCTTCTGA 59.888 50.000 0.00 0.00 0.00 3.27
6710 7058 3.246167 ACAAGTACTCCCTCCCTTCTGAT 60.246 47.826 0.00 0.00 0.00 2.90
6711 7059 3.777522 CAAGTACTCCCTCCCTTCTGATT 59.222 47.826 0.00 0.00 0.00 2.57
6712 7060 4.081695 AGTACTCCCTCCCTTCTGATTT 57.918 45.455 0.00 0.00 0.00 2.17
6713 7061 5.222278 AGTACTCCCTCCCTTCTGATTTA 57.778 43.478 0.00 0.00 0.00 1.40
6714 7062 4.963628 AGTACTCCCTCCCTTCTGATTTAC 59.036 45.833 0.00 0.00 0.00 2.01
6715 7063 4.081695 ACTCCCTCCCTTCTGATTTACT 57.918 45.455 0.00 0.00 0.00 2.24
6716 7064 4.034410 ACTCCCTCCCTTCTGATTTACTC 58.966 47.826 0.00 0.00 0.00 2.59
6717 7065 3.031736 TCCCTCCCTTCTGATTTACTCG 58.968 50.000 0.00 0.00 0.00 4.18
6718 7066 2.766828 CCCTCCCTTCTGATTTACTCGT 59.233 50.000 0.00 0.00 0.00 4.18
6719 7067 3.181474 CCCTCCCTTCTGATTTACTCGTC 60.181 52.174 0.00 0.00 0.00 4.20
6720 7068 3.489398 CCTCCCTTCTGATTTACTCGTCG 60.489 52.174 0.00 0.00 0.00 5.12
6721 7069 3.087031 TCCCTTCTGATTTACTCGTCGT 58.913 45.455 0.00 0.00 0.00 4.34
6722 7070 3.119602 TCCCTTCTGATTTACTCGTCGTG 60.120 47.826 0.00 0.00 0.00 4.35
6723 7071 3.179830 CCTTCTGATTTACTCGTCGTGG 58.820 50.000 0.00 0.00 0.00 4.94
6724 7072 3.367087 CCTTCTGATTTACTCGTCGTGGT 60.367 47.826 0.00 0.00 0.00 4.16
6725 7073 3.928727 TCTGATTTACTCGTCGTGGTT 57.071 42.857 0.00 0.00 0.00 3.67
6726 7074 4.247267 TCTGATTTACTCGTCGTGGTTT 57.753 40.909 0.00 0.00 0.00 3.27
6727 7075 4.624015 TCTGATTTACTCGTCGTGGTTTT 58.376 39.130 0.00 0.00 0.00 2.43
6728 7076 5.771469 TCTGATTTACTCGTCGTGGTTTTA 58.229 37.500 0.00 0.00 0.00 1.52
6729 7077 5.860182 TCTGATTTACTCGTCGTGGTTTTAG 59.140 40.000 0.00 0.00 0.00 1.85
6730 7078 5.531634 TGATTTACTCGTCGTGGTTTTAGT 58.468 37.500 0.00 0.00 0.00 2.24
6731 7079 5.630680 TGATTTACTCGTCGTGGTTTTAGTC 59.369 40.000 0.00 0.00 0.00 2.59
6732 7080 2.428888 ACTCGTCGTGGTTTTAGTCC 57.571 50.000 0.00 0.00 0.00 3.85
6733 7081 1.682854 ACTCGTCGTGGTTTTAGTCCA 59.317 47.619 0.00 0.00 0.00 4.02
6734 7082 2.101249 ACTCGTCGTGGTTTTAGTCCAA 59.899 45.455 0.00 0.00 36.68 3.53
6735 7083 3.125316 CTCGTCGTGGTTTTAGTCCAAA 58.875 45.455 0.00 0.00 36.68 3.28
6736 7084 3.731089 TCGTCGTGGTTTTAGTCCAAAT 58.269 40.909 0.00 0.00 36.68 2.32
6737 7085 4.128643 TCGTCGTGGTTTTAGTCCAAATT 58.871 39.130 0.00 0.00 36.68 1.82
6738 7086 4.575645 TCGTCGTGGTTTTAGTCCAAATTT 59.424 37.500 0.00 0.00 36.68 1.82
6739 7087 4.673311 CGTCGTGGTTTTAGTCCAAATTTG 59.327 41.667 11.40 11.40 36.68 2.32
6740 7088 5.504337 CGTCGTGGTTTTAGTCCAAATTTGA 60.504 40.000 19.86 3.14 36.68 2.69
6741 7089 6.267070 GTCGTGGTTTTAGTCCAAATTTGAA 58.733 36.000 19.86 0.00 36.68 2.69
6742 7090 6.197655 GTCGTGGTTTTAGTCCAAATTTGAAC 59.802 38.462 19.86 9.86 36.68 3.18
6743 7091 6.095720 TCGTGGTTTTAGTCCAAATTTGAACT 59.904 34.615 19.86 17.27 36.68 3.01
6744 7092 7.282675 TCGTGGTTTTAGTCCAAATTTGAACTA 59.717 33.333 19.86 16.16 36.68 2.24
6745 7093 7.916450 CGTGGTTTTAGTCCAAATTTGAACTAA 59.084 33.333 21.85 21.85 36.68 2.24
6746 7094 9.589111 GTGGTTTTAGTCCAAATTTGAACTAAA 57.411 29.630 28.55 28.55 40.55 1.85
6751 7099 9.589111 TTTAGTCCAAATTTGAACTAAAACCAC 57.411 29.630 29.52 8.90 39.79 4.16
6752 7100 6.270064 AGTCCAAATTTGAACTAAAACCACG 58.730 36.000 19.86 0.00 0.00 4.94
6753 7101 6.095720 AGTCCAAATTTGAACTAAAACCACGA 59.904 34.615 19.86 0.62 0.00 4.35
6754 7102 6.197655 GTCCAAATTTGAACTAAAACCACGAC 59.802 38.462 19.86 9.21 0.00 4.34
6755 7103 5.172411 CCAAATTTGAACTAAAACCACGACG 59.828 40.000 19.86 0.00 0.00 5.12
6756 7104 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
6757 7105 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
6758 7106 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
6759 7107 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
6760 7108 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
6761 7109 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
6762 7110 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
6763 7111 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
6952 7331 0.402121 GGAGCAGGTGGAGGAACTTT 59.598 55.000 0.00 0.00 41.55 2.66
6997 7376 2.046314 GGGCGAGCCTTGCTTGTA 60.046 61.111 14.33 0.00 41.74 2.41
6998 7377 2.399356 GGGCGAGCCTTGCTTGTAC 61.399 63.158 14.33 0.00 41.74 2.90
6999 7378 2.740714 GGCGAGCCTTGCTTGTACG 61.741 63.158 6.90 0.00 41.74 3.67
7000 7379 2.027625 GCGAGCCTTGCTTGTACGT 61.028 57.895 0.00 0.00 41.74 3.57
7001 7380 0.734942 GCGAGCCTTGCTTGTACGTA 60.735 55.000 0.00 0.00 41.74 3.57
7002 7381 0.989890 CGAGCCTTGCTTGTACGTAC 59.010 55.000 18.90 18.90 39.88 3.67
7003 7382 1.667756 CGAGCCTTGCTTGTACGTACA 60.668 52.381 24.10 24.10 39.88 2.90
7141 7525 0.170339 GGCAGACCATTTAACCGCAC 59.830 55.000 0.00 0.00 35.26 5.34
7193 7583 8.867935 CATCCTCTTGTAGATATCTTTATTGCG 58.132 37.037 11.25 0.00 0.00 4.85
7351 7803 6.882610 ATTTGATCTGTACACACACAACAT 57.117 33.333 0.00 0.00 0.00 2.71
7410 7866 0.312102 GCTTTGCTTCTTGCCGAGTT 59.688 50.000 0.00 0.00 42.00 3.01
7467 7923 2.195139 GGGCCATGCAGCAGATCT 59.805 61.111 4.39 0.00 0.00 2.75
7619 8078 1.086696 CCTTGCATACACCTGTTCCG 58.913 55.000 0.00 0.00 0.00 4.30
7628 8087 1.002087 ACACCTGTTCCGTCTTCCATC 59.998 52.381 0.00 0.00 0.00 3.51
7645 8104 2.163010 CCATCCATGCAACTGAACTGAC 59.837 50.000 0.00 0.00 0.00 3.51
7678 8137 2.418609 CGCAGGTACCATCATCAGTTCA 60.419 50.000 15.94 0.00 0.00 3.18
7693 8152 1.086634 GTTCACGGCTCCTGATCAGC 61.087 60.000 17.76 7.05 36.02 4.26
7756 8215 0.251297 CAACTTCATGCTGGGGTGGA 60.251 55.000 0.00 0.00 0.00 4.02
7767 8226 1.144936 GGGGTGGATTCTCTGAGCG 59.855 63.158 0.00 0.00 0.00 5.03
7844 8303 1.174712 AAATGCGTGTGCTGCTCCTT 61.175 50.000 0.00 0.00 43.34 3.36
7865 8324 5.221145 CCTTCATGCTCTACACGAGAAGTAT 60.221 44.000 0.00 0.00 42.62 2.12
7873 8332 1.132643 ACACGAGAAGTATCCTGCGTC 59.867 52.381 0.00 0.00 0.00 5.19
8048 8513 8.259049 TCCAGTAAAACTATAATTTGTGGACG 57.741 34.615 2.95 0.00 33.10 4.79
8058 8523 9.120538 ACTATAATTTGTGGACGATTATTGCTT 57.879 29.630 0.00 0.00 30.80 3.91
8084 8549 5.231779 TGCGTGTTTCATCATTTGTTTGAAG 59.768 36.000 0.00 0.00 31.54 3.02
8086 8551 6.630015 CGTGTTTCATCATTTGTTTGAAGTG 58.370 36.000 0.00 0.00 31.54 3.16
8087 8552 6.291743 CGTGTTTCATCATTTGTTTGAAGTGG 60.292 38.462 0.00 0.00 31.54 4.00
8088 8553 6.756074 GTGTTTCATCATTTGTTTGAAGTGGA 59.244 34.615 0.00 0.00 31.54 4.02
8093 8964 5.756195 TCATTTGTTTGAAGTGGAGACTG 57.244 39.130 0.00 0.00 30.61 3.51
8101 8972 3.305720 TGAAGTGGAGACTGGTAGTTGT 58.694 45.455 0.00 0.00 30.61 3.32
8192 9065 2.731217 CAACTTTCTTGCCAAGGAACG 58.269 47.619 4.30 0.00 0.00 3.95
8206 9079 0.165944 GGAACGACACGCCAATCTTG 59.834 55.000 0.00 0.00 0.00 3.02
8236 9109 1.453155 ACATCCAGAATGTGCCGTTC 58.547 50.000 0.00 0.37 47.00 3.95
8285 9158 3.463944 ACCAAAGGCCGATTACTATTCG 58.536 45.455 0.00 0.00 36.38 3.34
8290 9163 3.725490 AGGCCGATTACTATTCGTTTCC 58.275 45.455 0.00 0.00 34.85 3.13
8336 9209 5.524646 ACTGTTGCACAATTGGAATCAAAAG 59.475 36.000 10.83 13.19 35.26 2.27
8349 9222 6.767456 TGGAATCAAAAGTTGCCACAATTAT 58.233 32.000 0.00 0.00 0.00 1.28
8369 9242 9.524106 CAATTATGTGTAAGGTAGAATGTCGTA 57.476 33.333 0.00 0.00 0.00 3.43
8405 9278 1.021202 CCGTTGATTGGTGTGTGTGT 58.979 50.000 0.00 0.00 0.00 3.72
8410 9283 3.179869 ATTGGTGTGTGTGTGCGCG 62.180 57.895 0.00 0.00 0.00 6.86
8471 9344 8.996024 TTATTCAGATTCATCAACTCGTTGTA 57.004 30.769 9.38 0.00 41.16 2.41
8478 9351 8.338259 AGATTCATCAACTCGTTGTATTTATGC 58.662 33.333 9.38 0.00 41.16 3.14
8479 9352 6.976636 TCATCAACTCGTTGTATTTATGCA 57.023 33.333 9.38 0.00 41.16 3.96
8480 9353 6.771076 TCATCAACTCGTTGTATTTATGCAC 58.229 36.000 9.38 0.00 41.16 4.57
8481 9354 6.370166 TCATCAACTCGTTGTATTTATGCACA 59.630 34.615 9.38 0.00 41.16 4.57
8482 9355 5.922546 TCAACTCGTTGTATTTATGCACAC 58.077 37.500 9.38 0.00 41.16 3.82
8483 9356 4.577687 ACTCGTTGTATTTATGCACACG 57.422 40.909 0.00 8.19 32.80 4.49
8490 9372 5.087391 TGTATTTATGCACACGGAAGGTA 57.913 39.130 0.00 0.00 0.00 3.08
8508 9390 5.957771 AGGTATTGACAGACATGTATGGT 57.042 39.130 23.45 10.49 40.68 3.55
8558 9441 8.332996 AGAACTCTACTACAAATCTAACGTCA 57.667 34.615 0.00 0.00 0.00 4.35
8578 9461 4.448732 GTCAGATTTTTGACCATGGCAAAC 59.551 41.667 24.74 17.12 41.24 2.93
8708 9591 5.379757 CAAACTAAATTTGCCATCATCGC 57.620 39.130 0.00 0.00 41.30 4.58
8709 9592 4.717233 AACTAAATTTGCCATCATCGCA 57.283 36.364 0.00 0.00 0.00 5.10
8734 9617 8.944029 CACCAATATAAATTGCCATGAAAAACA 58.056 29.630 0.00 0.00 41.06 2.83
8742 9625 7.605410 AATTGCCATGAAAAACATCAGATTC 57.395 32.000 0.00 0.00 37.07 2.52
8760 9643 6.599244 TCAGATTCGTCATGCCTAAAAATCTT 59.401 34.615 0.00 0.00 31.48 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.120579 GTCAATGTTGGTCCAACTATGAATACA 59.879 37.037 29.01 14.37 43.85 2.29
40 41 5.049060 TCGTCTTACAAATGGTCAATGTTGG 60.049 40.000 0.00 0.00 0.00 3.77
48 49 6.721571 TCTGATTTCGTCTTACAAATGGTC 57.278 37.500 0.00 0.00 0.00 4.02
85 86 3.055094 GTCCTTTGGCTGTCTATCAAGGA 60.055 47.826 0.00 0.00 0.00 3.36
130 131 8.053963 TGCTCTTAGATACTAGTGGTACTTTCT 58.946 37.037 5.39 0.00 32.72 2.52
139 140 6.081049 GTGCGTATGCTCTTAGATACTAGTG 58.919 44.000 5.39 0.00 43.34 2.74
141 142 6.242508 TGTGCGTATGCTCTTAGATACTAG 57.757 41.667 8.69 0.00 43.34 2.57
142 143 6.262496 AGTTGTGCGTATGCTCTTAGATACTA 59.738 38.462 8.69 0.00 43.34 1.82
215 219 7.037442 TGTTAACCTCAGCTAATTAACCCCTAA 60.037 37.037 2.48 0.06 36.92 2.69
218 222 5.503002 TGTTAACCTCAGCTAATTAACCCC 58.497 41.667 2.48 0.00 36.92 4.95
229 240 4.740205 GCAAGAAGTTTTGTTAACCTCAGC 59.260 41.667 2.48 0.00 0.00 4.26
232 243 5.281727 CCTGCAAGAAGTTTTGTTAACCTC 58.718 41.667 2.48 0.00 34.07 3.85
670 681 2.758434 GGTAACTTTGGGGCGGGA 59.242 61.111 0.00 0.00 0.00 5.14
759 770 2.795117 GTACTGTTACAGTAGCTCGGC 58.205 52.381 23.59 8.80 45.88 5.54
769 780 2.373836 AGCAATGGTGGGTACTGTTACA 59.626 45.455 0.00 0.00 0.00 2.41
983 1001 1.132913 CCATGATCTCCTCCTCCTCCA 60.133 57.143 0.00 0.00 0.00 3.86
1017 1038 1.379527 TCTCGATACGCTTCAGCTCA 58.620 50.000 0.00 0.00 39.32 4.26
1029 1050 3.737047 GCCGGTTGATCTTGTTCTCGATA 60.737 47.826 1.90 0.00 0.00 2.92
1197 1218 1.120530 GGAGGGGAGCTCGTTGATTA 58.879 55.000 7.83 0.00 0.00 1.75
1206 1227 2.286732 ATGCAAGGGAGGGGAGCT 60.287 61.111 0.00 0.00 0.00 4.09
1590 1616 4.163078 TGTTCCACACAAAAACAATCCCAT 59.837 37.500 0.00 0.00 29.87 4.00
1611 1637 2.108970 GTCCCCCGACTTCTCTATTGT 58.891 52.381 0.00 0.00 35.99 2.71
1630 1656 3.330720 CCCCTTTCCCCTCGCAGT 61.331 66.667 0.00 0.00 0.00 4.40
1747 1773 2.088104 TACTCAGATCGGGCCAGATT 57.912 50.000 19.95 6.05 0.00 2.40
1788 1816 1.151668 CGCAGAAGGGTGAAGAACAG 58.848 55.000 0.00 0.00 0.00 3.16
1917 1945 8.744568 AGGCAAAATCTAAATCTCTCTTTAGG 57.255 34.615 4.31 0.00 38.62 2.69
2001 2030 4.021104 GGAGATTGAACAAGAAAAAGGGGG 60.021 45.833 0.00 0.00 0.00 5.40
2095 2124 7.100458 AGTTACTTTTGCTTGAACTTCACAT 57.900 32.000 0.00 0.00 0.00 3.21
2136 2168 9.071276 GCTTGAGAATAAGATCAATTATGGGAA 57.929 33.333 0.00 0.00 0.00 3.97
2137 2169 8.219868 TGCTTGAGAATAAGATCAATTATGGGA 58.780 33.333 0.00 0.00 0.00 4.37
2138 2170 8.295288 GTGCTTGAGAATAAGATCAATTATGGG 58.705 37.037 0.00 0.00 0.00 4.00
2334 2367 7.894847 AGTAAAAGAAAATCGCAACACAAAAG 58.105 30.769 0.00 0.00 0.00 2.27
2346 2379 5.121768 TCTGCCACGCTAGTAAAAGAAAATC 59.878 40.000 0.00 0.00 0.00 2.17
2361 2394 1.929836 CAGAAAGTAGATCTGCCACGC 59.070 52.381 5.18 0.00 38.03 5.34
2362 2395 3.238108 ACAGAAAGTAGATCTGCCACG 57.762 47.619 5.18 0.00 46.56 4.94
2375 2408 6.507023 ACATAAAGAACAGGCAAACAGAAAG 58.493 36.000 0.00 0.00 0.00 2.62
2436 2469 5.640158 ACGGAGATATAACATGGGGAAAA 57.360 39.130 0.00 0.00 0.00 2.29
2440 2473 3.559171 CCCAACGGAGATATAACATGGGG 60.559 52.174 0.00 0.00 42.05 4.96
2503 2536 0.037590 ACCACGGGTGCACAATACAT 59.962 50.000 20.43 0.00 32.98 2.29
2513 2546 2.660189 ACGATTTACTACCACGGGTG 57.340 50.000 5.90 0.00 36.19 4.61
2516 2549 6.304356 TCAGTATACGATTTACTACCACGG 57.696 41.667 0.00 0.00 0.00 4.94
2525 2558 7.379098 AGATGCTCGATCAGTATACGATTTA 57.621 36.000 10.24 3.72 35.58 1.40
2539 2572 8.930760 GCACTAGATAAAAATAAGATGCTCGAT 58.069 33.333 0.00 0.00 0.00 3.59
2540 2573 7.385205 GGCACTAGATAAAAATAAGATGCTCGA 59.615 37.037 0.00 0.00 0.00 4.04
2541 2574 7.171508 TGGCACTAGATAAAAATAAGATGCTCG 59.828 37.037 0.00 0.00 0.00 5.03
2668 2701 0.250338 AGAGCCACCGGAACAAAGAC 60.250 55.000 9.46 0.00 0.00 3.01
2684 2717 5.606348 AGGTGAATGCTCCTAACTAAGAG 57.394 43.478 0.00 0.00 36.29 2.85
2717 2750 7.624360 AAGTGTGATGTACAAGAACAAAAGA 57.376 32.000 0.00 0.00 41.89 2.52
2725 2758 6.582636 AGAACAGAAAGTGTGATGTACAAGA 58.417 36.000 0.00 0.00 41.89 3.02
2726 2759 6.851222 AGAACAGAAAGTGTGATGTACAAG 57.149 37.500 0.00 0.00 41.89 3.16
2727 2760 7.047891 AGAAGAACAGAAAGTGTGATGTACAA 58.952 34.615 0.00 0.00 41.89 2.41
2728 2761 6.582636 AGAAGAACAGAAAGTGTGATGTACA 58.417 36.000 0.00 0.00 40.26 2.90
2729 2762 7.484035 AAGAAGAACAGAAAGTGTGATGTAC 57.516 36.000 0.00 0.00 40.26 2.90
2751 2784 7.378181 ACATACCAGCCATACAAAAGAAAAAG 58.622 34.615 0.00 0.00 0.00 2.27
2757 2790 6.823689 ACTAAGACATACCAGCCATACAAAAG 59.176 38.462 0.00 0.00 0.00 2.27
2758 2791 6.597672 CACTAAGACATACCAGCCATACAAAA 59.402 38.462 0.00 0.00 0.00 2.44
2759 2792 6.112734 CACTAAGACATACCAGCCATACAAA 58.887 40.000 0.00 0.00 0.00 2.83
2760 2793 5.670485 CACTAAGACATACCAGCCATACAA 58.330 41.667 0.00 0.00 0.00 2.41
2832 2954 8.239314 AGAGCACACATGTTTGTAATATTTCAG 58.761 33.333 13.29 0.00 33.76 3.02
2859 2981 6.105333 AGACAGATATGTGCTCACTTTCTTC 58.895 40.000 0.00 0.00 0.00 2.87
2926 3048 6.946340 TCTTAGATGAGTGCCATGAGTAAAA 58.054 36.000 0.00 0.00 35.17 1.52
2995 3117 7.051623 ACGGCATCCTAAATATCAGTTAACAA 58.948 34.615 8.61 0.00 0.00 2.83
3017 3139 1.825474 ACCAGGAGTGATACTCAACGG 59.175 52.381 10.75 9.33 46.79 4.44
3029 3151 4.027437 GGAGTGAAAGATCTACCAGGAGT 58.973 47.826 0.00 0.00 0.00 3.85
3030 3152 4.026744 TGGAGTGAAAGATCTACCAGGAG 58.973 47.826 0.00 0.00 0.00 3.69
3034 3156 5.087323 AGAAGTGGAGTGAAAGATCTACCA 58.913 41.667 0.00 0.00 0.00 3.25
3120 3242 6.353404 TGAAGCCACCCTAAAAATTTTAGG 57.647 37.500 28.75 28.75 40.89 2.69
3122 3244 8.655901 AGAAATGAAGCCACCCTAAAAATTTTA 58.344 29.630 3.34 0.00 0.00 1.52
3123 3245 7.517320 AGAAATGAAGCCACCCTAAAAATTTT 58.483 30.769 0.00 0.00 0.00 1.82
3124 3246 7.078249 AGAAATGAAGCCACCCTAAAAATTT 57.922 32.000 0.00 0.00 0.00 1.82
3125 3247 6.686484 AGAAATGAAGCCACCCTAAAAATT 57.314 33.333 0.00 0.00 0.00 1.82
3126 3248 6.127338 GCTAGAAATGAAGCCACCCTAAAAAT 60.127 38.462 0.00 0.00 0.00 1.82
3127 3249 5.185056 GCTAGAAATGAAGCCACCCTAAAAA 59.815 40.000 0.00 0.00 0.00 1.94
3128 3250 4.705023 GCTAGAAATGAAGCCACCCTAAAA 59.295 41.667 0.00 0.00 0.00 1.52
3129 3251 4.263727 TGCTAGAAATGAAGCCACCCTAAA 60.264 41.667 0.00 0.00 0.00 1.85
3152 3283 6.838382 AGGAAAATACCAGTTAACACAGAGT 58.162 36.000 8.61 0.27 0.00 3.24
3167 3298 9.556030 CGATTTTGTAAGAAAGGAGGAAAATAC 57.444 33.333 0.00 0.00 0.00 1.89
3277 3411 1.535462 CGGTTAACCTGGCAAAGAGTG 59.465 52.381 22.12 0.00 0.00 3.51
3281 3415 3.504520 ACAATACGGTTAACCTGGCAAAG 59.495 43.478 22.12 7.43 0.00 2.77
3286 3420 7.437793 TCTTAAAACAATACGGTTAACCTGG 57.562 36.000 22.12 10.30 0.00 4.45
3374 3509 8.344831 CGCATCTTTGGTCATATGATAGAAAAA 58.655 33.333 9.02 5.18 0.00 1.94
3451 3587 3.885297 CCCAAAATTCCTCTATGATGCGT 59.115 43.478 0.00 0.00 0.00 5.24
3472 3608 4.740822 ACTTCCCCGCATGTGGCC 62.741 66.667 20.39 0.00 40.31 5.36
3481 3617 2.253758 CGCATATGGCACTTCCCCG 61.254 63.158 4.56 0.00 45.17 5.73
3553 3691 5.711506 TCATATGGTTTGCAAGAAGACATGT 59.288 36.000 0.00 0.00 0.00 3.21
3554 3692 6.198650 TCATATGGTTTGCAAGAAGACATG 57.801 37.500 2.13 0.00 0.00 3.21
3627 3765 5.767816 AGTGTTTCCGCATAAGAAGTTTT 57.232 34.783 0.00 0.00 0.00 2.43
3628 3766 5.995897 AGTAGTGTTTCCGCATAAGAAGTTT 59.004 36.000 0.00 0.00 0.00 2.66
3809 3947 2.031930 CCAATGTTTTTGTTGTGCTGCC 59.968 45.455 0.00 0.00 0.00 4.85
4246 4387 8.732746 AGACAGTCTGTTATTGTTTTTACTGT 57.267 30.769 7.00 0.00 46.48 3.55
4558 4705 9.197306 AGGTGAAAATTAGTTTACCAGAACTTT 57.803 29.630 6.60 0.00 40.24 2.66
4645 4792 8.454894 GGAAAATGATAGAACAGAAGGAGAAAC 58.545 37.037 0.00 0.00 0.00 2.78
4649 4796 5.825151 GGGGAAAATGATAGAACAGAAGGAG 59.175 44.000 0.00 0.00 0.00 3.69
4733 4880 4.937201 ACATGCATGATTGATGAGCATT 57.063 36.364 32.75 2.54 42.76 3.56
4786 4934 5.878116 TGCACTTATTACAAAAGTCGCCTAT 59.122 36.000 0.00 0.00 34.99 2.57
4827 4976 4.356405 TGAATCCAAGAGCTTTCAGTGA 57.644 40.909 0.00 0.00 0.00 3.41
4828 4977 5.640189 AATGAATCCAAGAGCTTTCAGTG 57.360 39.130 2.97 0.00 32.13 3.66
4865 5014 7.709182 GTGGCATTGACACTACATAATACTGTA 59.291 37.037 15.60 0.00 38.75 2.74
4866 5015 6.538742 GTGGCATTGACACTACATAATACTGT 59.461 38.462 15.60 0.00 38.75 3.55
4867 5016 6.292328 CGTGGCATTGACACTACATAATACTG 60.292 42.308 20.03 0.00 39.83 2.74
4868 5017 5.753438 CGTGGCATTGACACTACATAATACT 59.247 40.000 20.03 0.00 39.83 2.12
4869 5018 5.522460 ACGTGGCATTGACACTACATAATAC 59.478 40.000 20.03 0.00 39.83 1.89
5020 5169 8.713271 GCAGAAATATACAGCCAGATTAGTTAC 58.287 37.037 0.00 0.00 0.00 2.50
5029 5178 4.953667 TCAGAGCAGAAATATACAGCCAG 58.046 43.478 0.00 0.00 0.00 4.85
5098 5247 0.601311 ACCTCTGAGTTCGCTGCAAC 60.601 55.000 3.66 3.76 0.00 4.17
5181 5330 9.988350 CACACAAAGAGTATGTAATCCAAATAC 57.012 33.333 0.00 0.00 0.00 1.89
5463 5622 7.432148 AACATATGGTAGTCATTCTGTACCA 57.568 36.000 7.80 3.05 43.88 3.25
5518 5679 9.683069 TGCAGTTCTCTGAAAAATTTAGAAATC 57.317 29.630 2.64 0.00 43.76 2.17
5542 5708 1.330829 GCAAGTCTAAGCGGGTAATGC 59.669 52.381 0.00 0.00 0.00 3.56
5551 5717 5.840940 TTAAAACGAGAGCAAGTCTAAGC 57.159 39.130 0.00 0.00 34.71 3.09
5660 5827 2.752354 CCATACCATCAGAAACCGCAAA 59.248 45.455 0.00 0.00 0.00 3.68
5673 5840 2.200081 AGAGCCACTGAACCATACCAT 58.800 47.619 0.00 0.00 0.00 3.55
5674 5841 1.656587 AGAGCCACTGAACCATACCA 58.343 50.000 0.00 0.00 0.00 3.25
5694 5863 8.319143 TCTGCTACTAATTTGTTACCTTGTTC 57.681 34.615 0.00 0.00 0.00 3.18
5809 6047 1.467342 GTTGGTTTCGTCACCATAGCC 59.533 52.381 8.94 0.00 46.60 3.93
5810 6048 1.467342 GGTTGGTTTCGTCACCATAGC 59.533 52.381 8.94 6.78 46.60 2.97
5811 6049 2.742053 CAGGTTGGTTTCGTCACCATAG 59.258 50.000 8.94 0.00 46.60 2.23
5819 6057 1.546476 TGTTTTGCAGGTTGGTTTCGT 59.454 42.857 0.00 0.00 0.00 3.85
5828 6066 1.271379 ACCGCTAGATGTTTTGCAGGT 60.271 47.619 0.00 0.00 0.00 4.00
5839 6077 1.108776 TAAACCGAGCACCGCTAGAT 58.891 50.000 0.00 0.00 39.88 1.98
5862 6100 3.477530 ACTCCCTTCGCCTAATTAATGC 58.522 45.455 0.00 0.00 0.00 3.56
5900 6138 1.349026 ACCATATCATCCCTTGAGGCG 59.651 52.381 0.00 0.00 37.89 5.52
5901 6139 2.290577 GGACCATATCATCCCTTGAGGC 60.291 54.545 0.00 0.00 37.89 4.70
6027 6269 9.862149 TCATACAAGTGAATAGTACTCCATCTA 57.138 33.333 0.00 0.00 0.00 1.98
6122 6364 8.507524 AACTATTTCTTAGGTGGCTACAAATC 57.492 34.615 1.52 0.00 31.68 2.17
6223 6465 9.290988 TCTTTTTAGTGCATTGTAGAACCATTA 57.709 29.630 0.00 0.00 0.00 1.90
6226 6468 7.759489 ATCTTTTTAGTGCATTGTAGAACCA 57.241 32.000 0.00 0.00 0.00 3.67
6233 6475 6.804677 TCACACAATCTTTTTAGTGCATTGT 58.195 32.000 0.00 0.00 38.03 2.71
6313 6555 8.983789 GGGTGGTTGGAATTTTTAGGAATAATA 58.016 33.333 0.00 0.00 0.00 0.98
6465 6735 2.754552 TGTAGCCAATCTTCCAATGCAC 59.245 45.455 0.00 0.00 0.00 4.57
6467 6737 4.660789 AATGTAGCCAATCTTCCAATGC 57.339 40.909 0.00 0.00 0.00 3.56
6473 6821 6.620678 TGCAAAAGTAATGTAGCCAATCTTC 58.379 36.000 0.00 0.00 0.00 2.87
6513 6861 9.941325 AAATTTCATGCATAAACTATTGGACAA 57.059 25.926 0.00 0.00 0.00 3.18
6546 6894 7.148440 GCAAAAATAATGTAGCCAATCTTGCAA 60.148 33.333 0.00 0.00 35.52 4.08
6547 6895 6.313411 GCAAAAATAATGTAGCCAATCTTGCA 59.687 34.615 0.00 0.00 35.52 4.08
6548 6896 6.313411 TGCAAAAATAATGTAGCCAATCTTGC 59.687 34.615 0.00 0.00 35.89 4.01
6691 7039 3.786213 AATCAGAAGGGAGGGAGTACT 57.214 47.619 0.00 0.00 0.00 2.73
6692 7040 4.963628 AGTAAATCAGAAGGGAGGGAGTAC 59.036 45.833 0.00 0.00 0.00 2.73
6693 7041 5.209659 GAGTAAATCAGAAGGGAGGGAGTA 58.790 45.833 0.00 0.00 0.00 2.59
6694 7042 4.034410 GAGTAAATCAGAAGGGAGGGAGT 58.966 47.826 0.00 0.00 0.00 3.85
6695 7043 3.068873 CGAGTAAATCAGAAGGGAGGGAG 59.931 52.174 0.00 0.00 0.00 4.30
6696 7044 3.031736 CGAGTAAATCAGAAGGGAGGGA 58.968 50.000 0.00 0.00 0.00 4.20
6697 7045 2.766828 ACGAGTAAATCAGAAGGGAGGG 59.233 50.000 0.00 0.00 0.00 4.30
6698 7046 3.489398 CGACGAGTAAATCAGAAGGGAGG 60.489 52.174 0.00 0.00 0.00 4.30
6699 7047 3.128938 ACGACGAGTAAATCAGAAGGGAG 59.871 47.826 0.00 0.00 0.00 4.30
6700 7048 3.087031 ACGACGAGTAAATCAGAAGGGA 58.913 45.455 0.00 0.00 0.00 4.20
6701 7049 3.179830 CACGACGAGTAAATCAGAAGGG 58.820 50.000 0.00 0.00 0.00 3.95
6702 7050 3.179830 CCACGACGAGTAAATCAGAAGG 58.820 50.000 0.00 0.00 0.00 3.46
6703 7051 3.834610 ACCACGACGAGTAAATCAGAAG 58.165 45.455 0.00 0.00 0.00 2.85
6704 7052 3.928727 ACCACGACGAGTAAATCAGAA 57.071 42.857 0.00 0.00 0.00 3.02
6705 7053 3.928727 AACCACGACGAGTAAATCAGA 57.071 42.857 0.00 0.00 0.00 3.27
6706 7054 4.985044 AAAACCACGACGAGTAAATCAG 57.015 40.909 0.00 0.00 0.00 2.90
6707 7055 5.531634 ACTAAAACCACGACGAGTAAATCA 58.468 37.500 0.00 0.00 0.00 2.57
6708 7056 5.061435 GGACTAAAACCACGACGAGTAAATC 59.939 44.000 0.00 0.00 0.00 2.17
6709 7057 4.925646 GGACTAAAACCACGACGAGTAAAT 59.074 41.667 0.00 0.00 0.00 1.40
6710 7058 4.202101 TGGACTAAAACCACGACGAGTAAA 60.202 41.667 0.00 0.00 32.03 2.01
6711 7059 3.317711 TGGACTAAAACCACGACGAGTAA 59.682 43.478 0.00 0.00 32.03 2.24
6712 7060 2.884012 TGGACTAAAACCACGACGAGTA 59.116 45.455 0.00 0.00 32.03 2.59
6713 7061 1.682854 TGGACTAAAACCACGACGAGT 59.317 47.619 0.00 0.00 32.03 4.18
6714 7062 2.427232 TGGACTAAAACCACGACGAG 57.573 50.000 0.00 0.00 32.03 4.18
6715 7063 2.886862 TTGGACTAAAACCACGACGA 57.113 45.000 0.00 0.00 37.13 4.20
6716 7064 4.477302 AATTTGGACTAAAACCACGACG 57.523 40.909 0.00 0.00 37.13 5.12
6717 7065 5.823353 TCAAATTTGGACTAAAACCACGAC 58.177 37.500 17.90 0.00 37.13 4.34
6718 7066 6.095720 AGTTCAAATTTGGACTAAAACCACGA 59.904 34.615 27.39 0.00 45.03 4.35
6719 7067 6.270064 AGTTCAAATTTGGACTAAAACCACG 58.730 36.000 27.39 0.00 45.03 4.94
6727 7075 7.282675 TCGTGGTTTTAGTTCAAATTTGGACTA 59.717 33.333 28.28 28.28 45.03 2.59
6729 7077 6.197655 GTCGTGGTTTTAGTTCAAATTTGGAC 59.802 38.462 20.21 20.21 36.92 4.02
6730 7078 6.267070 GTCGTGGTTTTAGTTCAAATTTGGA 58.733 36.000 17.90 6.72 0.00 3.53
6731 7079 5.172411 CGTCGTGGTTTTAGTTCAAATTTGG 59.828 40.000 17.90 0.12 0.00 3.28
6732 7080 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
6733 7081 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
6734 7082 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
6735 7083 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
6736 7084 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
6737 7085 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
6738 7086 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
6739 7087 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
6740 7088 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
6741 7089 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
6742 7090 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
6743 7091 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
6744 7092 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
6745 7093 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
6746 7094 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
6747 7095 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
6748 7096 2.267188 TTCCGATTTACTCGTCGTGG 57.733 50.000 0.00 0.00 46.18 4.94
6749 7097 2.534349 CCATTCCGATTTACTCGTCGTG 59.466 50.000 0.00 0.00 46.18 4.35
6750 7098 2.480759 CCCATTCCGATTTACTCGTCGT 60.481 50.000 0.00 0.00 46.18 4.34
6751 7099 2.124903 CCCATTCCGATTTACTCGTCG 58.875 52.381 0.00 0.00 46.18 5.12
6752 7100 2.480845 CCCCATTCCGATTTACTCGTC 58.519 52.381 0.00 0.00 46.18 4.20
6753 7101 1.140252 CCCCCATTCCGATTTACTCGT 59.860 52.381 0.00 0.00 46.18 4.18
6770 7118 8.728596 AGTTATGCATATATATCTACTCCCCC 57.271 38.462 7.36 0.00 0.00 5.40
6952 7331 4.163268 TGCTATGTTACATACCTTCCTGCA 59.837 41.667 0.29 5.20 0.00 4.41
6993 7372 1.787731 CGCACACACATGTACGTACAA 59.212 47.619 30.46 15.24 40.16 2.41
6999 7378 0.934496 ACACACGCACACACATGTAC 59.066 50.000 0.00 0.00 36.72 2.90
7000 7379 0.933796 CACACACGCACACACATGTA 59.066 50.000 0.00 0.00 36.72 2.29
7001 7380 1.024046 ACACACACGCACACACATGT 61.024 50.000 0.00 0.00 40.80 3.21
7002 7381 0.589479 CACACACACGCACACACATG 60.589 55.000 0.00 0.00 0.00 3.21
7003 7382 1.720894 CACACACACGCACACACAT 59.279 52.632 0.00 0.00 0.00 3.21
7130 7514 2.021457 GCCCATACAGTGCGGTTAAAT 58.979 47.619 0.00 0.00 0.00 1.40
7134 7518 2.045340 GGCCCATACAGTGCGGTT 60.045 61.111 0.00 0.00 0.00 4.44
7141 7525 1.077212 AAGCTGCTGGCCCATACAG 60.077 57.895 1.35 9.07 43.05 2.74
7193 7583 4.168760 CAAAAATCAACTGATTCTCGGGC 58.831 43.478 5.44 0.00 43.41 6.13
7225 7615 4.905429 TGTGGCAAGTACATACAGTGAAT 58.095 39.130 0.00 0.00 0.00 2.57
7226 7616 4.344359 TGTGGCAAGTACATACAGTGAA 57.656 40.909 0.00 0.00 0.00 3.18
7334 7786 7.045416 AGTTCTTAATGTTGTGTGTGTACAGA 58.955 34.615 0.00 0.00 37.52 3.41
7338 7790 7.851387 TGAAGTTCTTAATGTTGTGTGTGTA 57.149 32.000 4.17 0.00 0.00 2.90
7351 7803 9.988350 GAATAGAAATGCGAATGAAGTTCTTAA 57.012 29.630 4.17 0.00 34.56 1.85
7526 7982 3.620488 GGAATGATTAGGGTGTTGCTGA 58.380 45.455 0.00 0.00 0.00 4.26
7532 7991 1.747206 GCAGCGGAATGATTAGGGTGT 60.747 52.381 8.32 0.00 0.00 4.16
7619 8078 2.715046 TCAGTTGCATGGATGGAAGAC 58.285 47.619 0.00 0.00 38.81 3.01
7628 8087 3.928727 AATGTCAGTTCAGTTGCATGG 57.071 42.857 0.00 0.00 0.00 3.66
7645 8104 4.765273 TGGTACCTGCGGCATATATAATG 58.235 43.478 14.36 0.00 0.00 1.90
7667 8126 1.134580 CAGGAGCCGTGAACTGATGAT 60.135 52.381 0.00 0.00 32.86 2.45
7693 8152 3.750371 TCCGTGGAATATTATTGGCTGG 58.250 45.455 0.00 0.00 0.00 4.85
7802 8261 2.673775 TTGGTTTCTTGGCTGATGGA 57.326 45.000 0.00 0.00 0.00 3.41
7844 8303 4.276183 GGATACTTCTCGTGTAGAGCATGA 59.724 45.833 0.00 0.00 46.44 3.07
7873 8332 1.623081 TAAAGAAAGAGGCACGCGCG 61.623 55.000 30.96 30.96 39.92 6.86
7959 8418 6.714810 AGTGTTTTACAAGATCCATGCAGTTA 59.285 34.615 0.00 0.00 0.00 2.24
7964 8423 4.622740 GCAAGTGTTTTACAAGATCCATGC 59.377 41.667 0.00 0.00 0.00 4.06
7970 8432 6.127479 TGGAACTTGCAAGTGTTTTACAAGAT 60.127 34.615 31.73 12.11 40.06 2.40
8048 8513 6.912051 TGATGAAACACGCATAAGCAATAATC 59.088 34.615 0.00 0.00 42.27 1.75
8058 8523 6.442112 TCAAACAAATGATGAAACACGCATA 58.558 32.000 0.00 0.00 0.00 3.14
8084 8549 1.070134 TGCACAACTACCAGTCTCCAC 59.930 52.381 0.00 0.00 0.00 4.02
8086 8551 2.350522 CATGCACAACTACCAGTCTCC 58.649 52.381 0.00 0.00 0.00 3.71
8087 8552 2.350522 CCATGCACAACTACCAGTCTC 58.649 52.381 0.00 0.00 0.00 3.36
8088 8553 1.003580 CCCATGCACAACTACCAGTCT 59.996 52.381 0.00 0.00 0.00 3.24
8093 8964 1.003118 TGAGTCCCATGCACAACTACC 59.997 52.381 0.00 0.00 0.00 3.18
8101 8972 4.469586 TCACTACTTATTGAGTCCCATGCA 59.530 41.667 0.00 0.00 39.86 3.96
8165 9038 1.208642 GGCAAGAAAGTTGCACACGC 61.209 55.000 11.56 0.00 46.58 5.34
8192 9065 3.701241 TCAAAAACAAGATTGGCGTGTC 58.299 40.909 0.00 0.00 38.28 3.67
8236 9109 2.004733 TGTCATCGCATTGAAGAGCTG 58.995 47.619 0.00 0.00 0.00 4.24
8285 9158 7.915397 ACAATAATTCGCACATATTCTGGAAAC 59.085 33.333 0.00 0.00 0.00 2.78
8290 9163 8.551205 ACAGTACAATAATTCGCACATATTCTG 58.449 33.333 0.00 0.00 0.00 3.02
8349 9222 6.519679 ACATACGACATTCTACCTTACACA 57.480 37.500 0.00 0.00 0.00 3.72
8369 9242 6.465439 TCAACGGATAAGTGATGAGTACAT 57.535 37.500 0.00 0.00 39.67 2.29
8412 9285 2.577644 CAATGGACACGCATGCGC 60.578 61.111 38.15 22.78 44.19 6.09
8413 9286 1.226101 GTCAATGGACACGCATGCG 60.226 57.895 36.79 36.79 43.73 4.73
8414 9287 4.771684 GTCAATGGACACGCATGC 57.228 55.556 7.91 7.91 43.73 4.06
8455 9328 7.095017 TGTGCATAAATACAACGAGTTGATGAA 60.095 33.333 21.14 7.00 42.93 2.57
8465 9338 4.329296 TTCCGTGTGCATAAATACAACG 57.671 40.909 0.00 0.00 0.00 4.10
8471 9344 5.065988 GTCAATACCTTCCGTGTGCATAAAT 59.934 40.000 0.00 0.00 0.00 1.40
8478 9351 2.993899 GTCTGTCAATACCTTCCGTGTG 59.006 50.000 0.00 0.00 0.00 3.82
8479 9352 2.631062 TGTCTGTCAATACCTTCCGTGT 59.369 45.455 0.00 0.00 0.00 4.49
8480 9353 3.313012 TGTCTGTCAATACCTTCCGTG 57.687 47.619 0.00 0.00 0.00 4.94
8481 9354 3.260884 ACATGTCTGTCAATACCTTCCGT 59.739 43.478 0.00 0.00 0.00 4.69
8482 9355 3.861840 ACATGTCTGTCAATACCTTCCG 58.138 45.455 0.00 0.00 0.00 4.30
8483 9356 5.760253 CCATACATGTCTGTCAATACCTTCC 59.240 44.000 0.00 0.00 36.79 3.46
8490 9372 6.244552 AGATGACCATACATGTCTGTCAAT 57.755 37.500 21.54 14.04 39.19 2.57
8530 9412 9.978044 ACGTTAGATTTGTAGTAGAGTTCTTTT 57.022 29.630 0.00 0.00 0.00 2.27
8534 9417 8.449397 TCTGACGTTAGATTTGTAGTAGAGTTC 58.551 37.037 5.85 0.00 0.00 3.01
8552 9435 3.305335 GCCATGGTCAAAAATCTGACGTT 60.305 43.478 14.67 0.00 45.60 3.99
8558 9441 3.390639 TGGTTTGCCATGGTCAAAAATCT 59.609 39.130 25.83 0.00 40.46 2.40
8568 9451 6.814506 TGAAAAATATTTGGTTTGCCATGG 57.185 33.333 7.63 7.63 45.56 3.66
8583 9466 9.598517 GGAGGACATAATTTGCAATGAAAAATA 57.401 29.630 0.00 0.00 0.00 1.40
8594 9477 3.194005 TCCTCGGAGGACATAATTTGC 57.806 47.619 22.70 0.00 40.06 3.68
8605 9488 0.035056 AAACTTGCCATCCTCGGAGG 60.035 55.000 18.25 18.25 36.46 4.30
8706 9589 4.869215 TCATGGCAATTTATATTGGTGCG 58.131 39.130 7.83 0.00 41.21 5.34
8708 9591 8.944029 TGTTTTTCATGGCAATTTATATTGGTG 58.056 29.630 7.83 0.00 41.21 4.17
8709 9592 9.683870 ATGTTTTTCATGGCAATTTATATTGGT 57.316 25.926 7.83 0.00 37.50 3.67
8734 9617 6.769822 AGATTTTTAGGCATGACGAATCTGAT 59.230 34.615 16.50 1.99 32.78 2.90
8738 9621 6.846283 CGTAAGATTTTTAGGCATGACGAATC 59.154 38.462 0.00 4.47 43.02 2.52
8742 9625 5.062934 TGACGTAAGATTTTTAGGCATGACG 59.937 40.000 0.00 0.00 43.62 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.