AutoCloner

Multiple sequence alignment - TraesCS6B01G285700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G285700	chr6B	100.000	2696	0	0	1	2696	515020911	515023606	0.000000e+00	4979.0
1	TraesCS6B01G285700	chr6A	87.707	1627	110	42	447	2022	448352502	448350915	0.000000e+00	1814.0
2	TraesCS6B01G285700	chr6A	86.607	448	26	15	4	447	448352973	448352556	5.260000e-127	464.0
3	TraesCS6B01G285700	chr6D	90.266	1315	71	33	745	2022	311583031	311581737	0.000000e+00	1666.0
4	TraesCS6B01G285700	chr6D	95.101	347	16	1	1	347	311584214	311583869	1.830000e-151	545.0
5	TraesCS6B01G285700	chr6D	94.872	78	4	0	597	674	311583604	311583527	3.650000e-24	122.0
6	TraesCS6B01G285700	chr6D	97.436	39	1	0	367	405	311583869	311583831	1.730000e-07	67.6
7	TraesCS6B01G285700	chr1A	94.838	678	33	2	2021	2696	570102781	570102104	0.000000e+00	1057.0
8	TraesCS6B01G285700	chr5B	96.041	581	23	0	2116	2696	432157680	432158260	0.000000e+00	946.0
9	TraesCS6B01G285700	chr5B	83.800	679	100	9	2021	2694	671593323	671593996	1.050000e-178	636.0
10	TraesCS6B01G285700	chr3A	91.704	675	55	1	2021	2694	84032447	84031773	0.000000e+00	935.0
11	TraesCS6B01G285700	chr3B	91.458	679	55	3	2021	2696	26815425	26816103	0.000000e+00	929.0
12	TraesCS6B01G285700	chr3B	85.672	677	93	4	2021	2694	257824854	257824179	0.000000e+00	710.0
13	TraesCS6B01G285700	chrUn	94.224	606	31	4	2021	2623	48369977	48369373	0.000000e+00	922.0
14	TraesCS6B01G285700	chr1B	88.807	679	72	4	2021	2696	331597191	331597868	0.000000e+00	830.0
15	TraesCS6B01G285700	chr1B	83.922	255	34	6	1285	1537	378858372	378858123	1.250000e-58	237.0
16	TraesCS6B01G285700	chr7D	92.661	436	23	4	1117	1543	126880327	126879892	1.060000e-173	619.0
17	TraesCS6B01G285700	chr5D	83.113	681	102	12	2023	2696	364730358	364729684	2.300000e-170	608.0
18	TraesCS6B01G285700	chr2D	83.846	520	73	10	1153	1668	488472373	488471861	4.040000e-133	484.0
19	TraesCS6B01G285700	chr2D	83.462	520	75	10	1153	1668	488364312	488363800	8.740000e-130	473.0
20	TraesCS6B01G285700	chr2A	84.047	514	71	10	1153	1662	632929025	632928519	4.040000e-133	484.0
21	TraesCS6B01G285700	chr2B	83.396	530	77	9	1154	1679	572678642	572678120	5.220000e-132	481.0
22	TraesCS6B01G285700	chr2B	88.211	246	19	9	1285	1520	682132217	682131972	4.390000e-73	285.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G285700	chr6B	515020911	515023606	2695	False	4979.00	4979	100.00000	1	2696	1	chr6B.!!$F1	2695
1	TraesCS6B01G285700	chr6A	448350915	448352973	2058	True	1139.00	1814	87.15700	4	2022	2	chr6A.!!$R1	2018
2	TraesCS6B01G285700	chr6D	311581737	311584214	2477	True	600.15	1666	94.41875	1	2022	4	chr6D.!!$R1	2021
3	TraesCS6B01G285700	chr1A	570102104	570102781	677	True	1057.00	1057	94.83800	2021	2696	1	chr1A.!!$R1	675
4	TraesCS6B01G285700	chr5B	432157680	432158260	580	False	946.00	946	96.04100	2116	2696	1	chr5B.!!$F1	580
5	TraesCS6B01G285700	chr5B	671593323	671593996	673	False	636.00	636	83.80000	2021	2694	1	chr5B.!!$F2	673
6	TraesCS6B01G285700	chr3A	84031773	84032447	674	True	935.00	935	91.70400	2021	2694	1	chr3A.!!$R1	673
7	TraesCS6B01G285700	chr3B	26815425	26816103	678	False	929.00	929	91.45800	2021	2696	1	chr3B.!!$F1	675
8	TraesCS6B01G285700	chr3B	257824179	257824854	675	True	710.00	710	85.67200	2021	2694	1	chr3B.!!$R1	673
9	TraesCS6B01G285700	chrUn	48369373	48369977	604	True	922.00	922	94.22400	2021	2623	1	chrUn.!!$R1	602
10	TraesCS6B01G285700	chr1B	331597191	331597868	677	False	830.00	830	88.80700	2021	2696	1	chr1B.!!$F1	675
11	TraesCS6B01G285700	chr5D	364729684	364730358	674	True	608.00	608	83.11300	2023	2696	1	chr5D.!!$R1	673
12	TraesCS6B01G285700	chr2D	488471861	488472373	512	True	484.00	484	83.84600	1153	1668	1	chr2D.!!$R2	515
13	TraesCS6B01G285700	chr2D	488363800	488364312	512	True	473.00	473	83.46200	1153	1668	1	chr2D.!!$R1	515
14	TraesCS6B01G285700	chr2A	632928519	632929025	506	True	484.00	484	84.04700	1153	1662	1	chr2A.!!$R1	509
15	TraesCS6B01G285700	chr2B	572678120	572678642	522	True	481.00	481	83.39600	1154	1679	1	chr2B.!!$R1	525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
558	659	0.035317	TGGGATGGATGTATGAGCGC	59.965	55.0	0.0	0.0	0.0	5.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2258	2904	0.52847	ACACACTAAGGAGCTCTCGC	59.472	55.0	14.64	0.0	0.0	5.03	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	3.259064	TGGTTATCTGTAAAGCGCACTC	58.741	45.455	11.47	0.00	0.00	3.51
205	206	4.021192	TCATCATCCCTTTTGCTTGTTTCC	60.021	41.667	0.00	0.00	0.00	3.13
207	208	3.903090	TCATCCCTTTTGCTTGTTTCCAT	59.097	39.130	0.00	0.00	0.00	3.41
220	221	1.730064	GTTTCCATTGAGAACGCGCTA	59.270	47.619	5.73	0.00	0.00	4.26
233	234	4.018609	CGCTACATCCGCTCCAAG	57.981	61.111	0.00	0.00	0.00	3.61
280	285	3.057736	CCTGAAAATGTTGAGCTGTGAGG	60.058	47.826	0.00	0.00	0.00	3.86
354	359	5.278169	GCACATCTGTTCACAAGTTTCATCT	60.278	40.000	0.00	0.00	0.00	2.90
409	414	4.926860	TCTGTTCGCATTTGTGTATCAG	57.073	40.909	0.00	0.00	0.00	2.90
414	419	4.200838	TCGCATTTGTGTATCAGAGGAA	57.799	40.909	0.00	0.00	0.00	3.36
421	426	4.743057	TGTGTATCAGAGGAATGGAGTG	57.257	45.455	0.00	0.00	0.00	3.51
422	427	4.352893	TGTGTATCAGAGGAATGGAGTGA	58.647	43.478	0.00	0.00	0.00	3.41
466	563	1.868109	GCCGTTCTTTCCCAGTTTTGC	60.868	52.381	0.00	0.00	0.00	3.68
497	594	4.440839	GAAAATTTTCGTGGGATGCTCT	57.559	40.909	14.83	0.00	0.00	4.09
499	596	2.787473	ATTTTCGTGGGATGCTCTGA	57.213	45.000	0.00	0.00	0.00	3.27
500	597	2.099141	TTTTCGTGGGATGCTCTGAG	57.901	50.000	0.00	0.00	0.00	3.35
511	612	2.238942	TGCTCTGAGCGAAAGTTTCA	57.761	45.000	23.35	0.84	46.26	2.69
521	622	1.063912	CGAAAGTTTCACAGTGCAGCA	59.936	47.619	15.67	0.00	0.00	4.41
524	625	1.008079	GTTTCACAGTGCAGCAGCC	60.008	57.895	0.00	0.00	41.13	4.85
529	630	2.746671	CAGTGCAGCAGCCCTCAG	60.747	66.667	0.00	0.00	41.13	3.35
536	637	2.743928	GCAGCCCTCAGACAACCG	60.744	66.667	0.00	0.00	0.00	4.44
537	638	3.059982	CAGCCCTCAGACAACCGA	58.940	61.111	0.00	0.00	0.00	4.69
538	639	1.079543	CAGCCCTCAGACAACCGAG	60.080	63.158	0.00	0.00	0.00	4.63
539	640	1.534235	AGCCCTCAGACAACCGAGT	60.534	57.895	0.00	0.00	0.00	4.18
541	642	1.293498	CCCTCAGACAACCGAGTGG	59.707	63.158	0.00	0.00	42.84	4.00
542	643	1.293498	CCTCAGACAACCGAGTGGG	59.707	63.158	0.00	0.00	40.75	4.61
554	655	1.970640	CCGAGTGGGATGGATGTATGA	59.029	52.381	0.00	0.00	38.47	2.15
555	656	2.028658	CCGAGTGGGATGGATGTATGAG	60.029	54.545	0.00	0.00	38.47	2.90
556	657	2.611473	CGAGTGGGATGGATGTATGAGC	60.611	54.545	0.00	0.00	0.00	4.26
557	658	1.345741	AGTGGGATGGATGTATGAGCG	59.654	52.381	0.00	0.00	0.00	5.03
558	659	0.035317	TGGGATGGATGTATGAGCGC	59.965	55.000	0.00	0.00	0.00	5.92
559	660	0.674895	GGGATGGATGTATGAGCGCC	60.675	60.000	2.29	0.00	0.00	6.53
560	661	0.322975	GGATGGATGTATGAGCGCCT	59.677	55.000	2.29	0.00	0.00	5.52
562	663	0.604780	ATGGATGTATGAGCGCCTGC	60.605	55.000	2.29	0.00	43.24	4.85
572	673	4.439472	GCGCCTGCGTTTGTACCG	62.439	66.667	13.57	0.00	42.09	4.02
573	674	3.039588	CGCCTGCGTTTGTACCGT	61.040	61.111	2.83	0.00	34.35	4.83
574	675	2.600475	CGCCTGCGTTTGTACCGTT	61.600	57.895	2.83	0.00	34.35	4.44
575	676	1.082366	GCCTGCGTTTGTACCGTTG	60.082	57.895	0.00	0.00	0.00	4.10
576	677	1.778027	GCCTGCGTTTGTACCGTTGT	61.778	55.000	0.00	0.00	0.00	3.32
577	678	0.658897	CCTGCGTTTGTACCGTTGTT	59.341	50.000	0.00	0.00	0.00	2.83
578	679	1.333435	CCTGCGTTTGTACCGTTGTTC	60.333	52.381	0.00	0.00	0.00	3.18
579	680	1.328069	CTGCGTTTGTACCGTTGTTCA	59.672	47.619	0.00	0.00	0.00	3.18
580	681	1.736126	TGCGTTTGTACCGTTGTTCAA	59.264	42.857	0.00	0.00	30.94	2.69
581	682	2.161012	TGCGTTTGTACCGTTGTTCAAA	59.839	40.909	0.00	0.00	38.80	2.69
582	683	3.169733	GCGTTTGTACCGTTGTTCAAAA	58.830	40.909	0.00	0.00	41.47	2.44
583	684	3.607209	GCGTTTGTACCGTTGTTCAAAAA	59.393	39.130	0.00	0.00	41.47	1.94
653	763	2.768920	CGAAGTGTTCTCGAGCGCG	61.769	63.158	7.81	2.41	39.35	6.86
689	799	2.320367	CACGTTCAACCGAGAGAGAAG	58.680	52.381	0.00	0.00	0.00	2.85
816	1388	4.804108	CGACTCACAGAAAGTTGATCTCT	58.196	43.478	0.00	0.00	30.87	3.10
817	1389	5.620205	GCGACTCACAGAAAGTTGATCTCTA	60.620	44.000	0.00	0.00	30.87	2.43
844	1416	2.288763	GGCCACGTGTCATTCCATTTTT	60.289	45.455	15.65	0.00	0.00	1.94
970	1545	1.688735	ACACAACAGTGCTAGAGCTCA	59.311	47.619	17.77	0.82	42.66	4.26
978	1556	4.892345	ACAGTGCTAGAGCTCATCTCATTA	59.108	41.667	17.77	0.00	44.35	1.90
983	1561	4.560513	GCTAGAGCTCATCTCATTACACCC	60.561	50.000	17.77	0.00	44.35	4.61
1007	1585	2.359850	TGTTGCGTCCATGGCTCC	60.360	61.111	6.96	0.00	0.00	4.70
1008	1586	3.134127	GTTGCGTCCATGGCTCCC	61.134	66.667	6.96	0.00	0.00	4.30
1009	1587	4.776322	TTGCGTCCATGGCTCCCG	62.776	66.667	6.96	7.69	0.00	5.14
1248	1826	1.443407	CTCCCTCATGATCGGCGTT	59.557	57.895	6.85	0.00	0.00	4.84
1263	1841	3.419759	GTTGGCGCCGTCAACGAT	61.420	61.111	19.47	0.00	38.36	3.73
1268	1846	2.673114	GCGCCGTCAACGATTCCAA	61.673	57.895	3.71	0.00	43.02	3.53
1388	1966	2.517875	GGCCCAGATCAAGCGCAT	60.518	61.111	11.47	0.00	0.00	4.73
1430	2050	4.473520	CAACCTGCCGAGCCCGAT	62.474	66.667	0.00	0.00	38.22	4.18
1689	2309	2.811317	CTCTTCGGAGTGCACGGC	60.811	66.667	12.01	7.73	37.31	5.68
1716	2336	1.062525	GAGCGCAAATTACGGGCAG	59.937	57.895	11.47	0.00	44.20	4.85
1759	2379	5.010282	GGAATAACCGAGCCAATGGATTAT	58.990	41.667	2.05	0.00	0.00	1.28
1804	2424	1.016130	CGCTAGGTCTGTTGGTGCTG	61.016	60.000	0.00	0.00	0.00	4.41
1893	2536	6.365970	AGCCAGGAGATCGTATATTTGAAT	57.634	37.500	0.00	0.00	0.00	2.57
1914	2557	7.475015	TGAATACAGATTATGAAGTTTGCTGC	58.525	34.615	0.00	0.00	0.00	5.25
1967	2610	1.344438	TCTGCACTCGGAAATGTCACT	59.656	47.619	0.00	0.00	0.00	3.41
1973	2616	3.935203	CACTCGGAAATGTCACTGCTTAT	59.065	43.478	0.00	0.00	0.00	1.73
1981	2624	6.183360	GGAAATGTCACTGCTTATGTACAGTC	60.183	42.308	0.33	0.00	45.15	3.51
1998	2641	2.225019	CAGTCACAACTTGTCATGAGGC	59.775	50.000	0.00	0.00	31.71	4.70
2258	2904	4.087892	CACCAGAGGCCCAGACGG	62.088	72.222	0.00	0.00	0.00	4.79
2402	3048	1.899437	GCCACCTCAGGATCGACCAA	61.899	60.000	0.00	0.00	42.04	3.67
2637	3283	3.566322	TCAAAACCACACCCAGTATTTCG	59.434	43.478	0.00	0.00	0.00	3.46
2681	3327	2.109425	TCTCGTGTCTCATTCCTCGA	57.891	50.000	0.00	0.00	0.00	4.04

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	3.209410	AGCTGCCATTTTCGATTCTAGG	58.791	45.455	0.00	0.00	0.00	3.02
205	206	1.258982	GGATGTAGCGCGTTCTCAATG	59.741	52.381	8.43	0.00	0.00	2.82
207	208	0.800683	CGGATGTAGCGCGTTCTCAA	60.801	55.000	8.43	0.00	0.00	3.02
220	221	2.206635	CTCTCCTTGGAGCGGATGT	58.793	57.895	11.61	0.00	0.00	3.06
233	234	0.178068	TTTGCGGTATCCTGCTCTCC	59.822	55.000	0.00	0.00	0.00	3.71
246	251	4.057432	ACATTTTCAGGAAACATTTGCGG	58.943	39.130	0.00	0.00	33.38	5.69
280	285	2.500582	GAAGCTTGCTTGCGACGC	60.501	61.111	14.19	14.19	38.13	5.19
311	316	3.248602	GTGCTCATGTTATCCGCCTAAAG	59.751	47.826	0.00	0.00	0.00	1.85
354	359	0.250553	CGGCCACCAACTTACTGGAA	60.251	55.000	2.24	0.00	38.96	3.53
409	414	2.461695	TCCAGTCTCACTCCATTCCTC	58.538	52.381	0.00	0.00	0.00	3.71
414	419	4.137543	GTTTTGTTCCAGTCTCACTCCAT	58.862	43.478	0.00	0.00	0.00	3.41
421	426	2.687935	TGGCTTGTTTTGTTCCAGTCTC	59.312	45.455	0.00	0.00	0.00	3.36
422	427	2.733956	TGGCTTGTTTTGTTCCAGTCT	58.266	42.857	0.00	0.00	0.00	3.24
486	583	0.391661	TTTCGCTCAGAGCATCCCAC	60.392	55.000	22.49	0.00	42.58	4.61
497	594	1.330521	GCACTGTGAAACTTTCGCTCA	59.669	47.619	12.86	5.52	40.72	4.26
499	596	1.331756	CTGCACTGTGAAACTTTCGCT	59.668	47.619	12.86	0.00	40.72	4.93
500	597	1.746760	CTGCACTGTGAAACTTTCGC	58.253	50.000	12.86	7.95	40.51	4.70
521	622	3.382111	CTCGGTTGTCTGAGGGCT	58.618	61.111	0.00	0.00	41.83	5.19
529	630	0.541863	ATCCATCCCACTCGGTTGTC	59.458	55.000	0.00	0.00	30.27	3.18
536	637	2.611473	CGCTCATACATCCATCCCACTC	60.611	54.545	0.00	0.00	0.00	3.51
537	638	1.345741	CGCTCATACATCCATCCCACT	59.654	52.381	0.00	0.00	0.00	4.00
538	639	1.800805	CGCTCATACATCCATCCCAC	58.199	55.000	0.00	0.00	0.00	4.61
539	640	0.035317	GCGCTCATACATCCATCCCA	59.965	55.000	0.00	0.00	0.00	4.37
541	642	0.322975	AGGCGCTCATACATCCATCC	59.677	55.000	7.64	0.00	0.00	3.51
542	643	1.436600	CAGGCGCTCATACATCCATC	58.563	55.000	7.64	0.00	0.00	3.51
554	655	3.047877	GGTACAAACGCAGGCGCT	61.048	61.111	14.32	0.00	44.19	5.92
555	656	4.439472	CGGTACAAACGCAGGCGC	62.439	66.667	14.32	0.00	44.19	6.53
556	657	2.600475	AACGGTACAAACGCAGGCG	61.600	57.895	12.71	12.71	46.03	5.52
557	658	1.082366	CAACGGTACAAACGCAGGC	60.082	57.895	0.00	0.00	34.00	4.85
558	659	0.658897	AACAACGGTACAAACGCAGG	59.341	50.000	0.00	0.00	34.00	4.85
559	660	1.328069	TGAACAACGGTACAAACGCAG	59.672	47.619	0.00	0.00	34.00	5.18
560	661	1.366679	TGAACAACGGTACAAACGCA	58.633	45.000	0.00	0.00	34.00	5.24
581	682	2.952273	GGCACGTTCGCAACTTTTT	58.048	47.368	0.00	0.00	0.00	1.94
582	683	4.702020	GGCACGTTCGCAACTTTT	57.298	50.000	0.00	0.00	0.00	2.27
653	763	1.741770	GTGGTGCGACATCTGGGAC	60.742	63.158	0.00	0.00	0.00	4.46
844	1416	8.001881	TGGATTTTTGTTCTAGCACTGTAAAA	57.998	30.769	0.00	0.00	0.00	1.52
848	1420	5.769662	TCATGGATTTTTGTTCTAGCACTGT	59.230	36.000	0.00	0.00	0.00	3.55
857	1429	4.795278	GCTCATCGTCATGGATTTTTGTTC	59.205	41.667	0.00	0.00	0.00	3.18
860	1435	4.627611	AGCTCATCGTCATGGATTTTTG	57.372	40.909	0.00	0.00	0.00	2.44
962	1537	3.570125	CGGGTGTAATGAGATGAGCTCTA	59.430	47.826	16.19	1.49	44.27	2.43
970	1545	2.208527	ACCGCGGGTGTAATGAGAT	58.791	52.632	31.76	0.00	32.98	2.75
992	1570	4.776322	CGGGAGCCATGGACGCAA	62.776	66.667	18.40	0.00	0.00	4.85
1248	1826	3.115892	GAATCGTTGACGGCGCCA	61.116	61.111	28.98	3.37	40.29	5.69
1699	2319	0.958382	TTCTGCCCGTAATTTGCGCT	60.958	50.000	9.73	0.00	0.00	5.92
1716	2336	3.998341	TCCCGCGGCAAAATATATACTTC	59.002	43.478	22.85	0.00	0.00	3.01
1759	2379	7.599245	GCTACTCTGCTAGTCTTGTTTTCTAAA	59.401	37.037	0.00	0.00	39.80	1.85
1804	2424	5.263185	ACATGATATGTTTTCGTAAAGCGC	58.737	37.500	0.00	0.00	41.63	5.92
1825	2445	7.482474	TGCACGTTAGTAGCAATATACTTACA	58.518	34.615	0.00	0.00	35.86	2.41
1826	2446	7.919313	TGCACGTTAGTAGCAATATACTTAC	57.081	36.000	0.00	0.00	37.24	2.34
1827	2447	8.139350	ACATGCACGTTAGTAGCAATATACTTA	58.861	33.333	1.35	0.00	37.71	2.24
1828	2448	6.984474	ACATGCACGTTAGTAGCAATATACTT	59.016	34.615	1.35	0.00	37.71	2.24
1830	2450	6.346598	CCACATGCACGTTAGTAGCAATATAC	60.347	42.308	1.35	0.00	37.71	1.47
1840	2475	2.032634	CGGCCACATGCACGTTAGT	61.033	57.895	2.24	0.00	43.89	2.24
1893	2536	5.163723	GCAGCAGCAAACTTCATAATCTGTA	60.164	40.000	0.00	0.00	41.58	2.74
1914	2557	3.698040	ACATTCTTTTCATAGGCCAGCAG	59.302	43.478	5.01	0.00	0.00	4.24
1953	2596	3.935203	ACATAAGCAGTGACATTTCCGAG	59.065	43.478	0.00	0.00	0.00	4.63
1967	2610	5.364778	ACAAGTTGTGACTGTACATAAGCA	58.635	37.500	7.96	0.00	35.91	3.91
1973	2616	5.017294	TCATGACAAGTTGTGACTGTACA	57.983	39.130	14.57	3.39	35.91	2.90
1981	2624	1.608055	TGGCCTCATGACAAGTTGTG	58.392	50.000	14.57	0.00	0.00	3.33
1998	2641	5.818136	ACACCGTTGAGATATTTGAATGG	57.182	39.130	2.64	2.64	0.00	3.16
2258	2904	0.528470	ACACACTAAGGAGCTCTCGC	59.472	55.000	14.64	0.00	0.00	5.03
2402	3048	1.770110	TGCCACCACTTCCAGGAGT	60.770	57.895	0.00	0.00	0.00	3.85
2637	3283	4.306600	GGAAAATGATCAAACACCCACAC	58.693	43.478	0.00	0.00	0.00	3.82

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.