Multiple sequence alignment - TraesCS6B01G285200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G285200 chr6B 100.000 3646 0 0 1 3646 514120404 514116759 0.000000e+00 6734
1 TraesCS6B01G285200 chr6B 89.223 631 67 1 3010 3640 707204644 707204015 0.000000e+00 787
2 TraesCS6B01G285200 chr6D 89.227 2534 138 57 516 3008 312762609 312765048 0.000000e+00 3042
3 TraesCS6B01G285200 chr6D 84.848 462 34 16 1 436 312757015 312757466 2.010000e-117 433
4 TraesCS6B01G285200 chr6A 88.512 2507 149 52 554 3008 449583769 449586188 0.000000e+00 2905
5 TraesCS6B01G285200 chr6A 82.677 381 26 13 1 352 449581443 449581812 5.920000e-78 302
6 TraesCS6B01G285200 chr1B 93.564 637 41 0 3010 3646 375858717 375858081 0.000000e+00 950
7 TraesCS6B01G285200 chr1B 92.779 637 46 0 3010 3646 444005175 444005811 0.000000e+00 922
8 TraesCS6B01G285200 chr1B 91.736 605 48 1 3010 3614 573322763 573322161 0.000000e+00 839
9 TraesCS6B01G285200 chr2B 91.209 637 56 0 3010 3646 11410704 11411340 0.000000e+00 867
10 TraesCS6B01G285200 chr2B 78.020 687 89 46 1224 1868 575903796 575904462 3.440000e-100 375
11 TraesCS6B01G285200 chr5B 90.575 626 57 1 3010 3633 520861339 520861964 0.000000e+00 828
12 TraesCS6B01G285200 chr7B 89.841 630 61 3 3010 3639 110341902 110341276 0.000000e+00 806
13 TraesCS6B01G285200 chr7B 83.077 195 28 4 1232 1422 521578100 521578293 4.840000e-39 172
14 TraesCS6B01G285200 chr4A 89.168 637 69 0 3010 3646 602393337 602392701 0.000000e+00 795
15 TraesCS6B01G285200 chr3B 89.085 623 68 0 3010 3632 99114870 99115492 0.000000e+00 774
16 TraesCS6B01G285200 chr2D 78.529 666 86 38 1224 1856 491429579 491430220 5.710000e-103 385
17 TraesCS6B01G285200 chr2A 81.633 343 50 12 1525 1856 635723303 635723643 4.640000e-69 272
18 TraesCS6B01G285200 chr2A 93.168 161 11 0 1224 1384 635723011 635723171 1.690000e-58 237
19 TraesCS6B01G285200 chr7D 83.590 195 27 4 1232 1422 492148825 492149018 1.040000e-40 178
20 TraesCS6B01G285200 chr7D 77.990 209 28 12 1226 1425 63325769 63325968 8.270000e-22 115
21 TraesCS6B01G285200 chr7A 83.590 195 27 4 1232 1422 558402778 558402971 1.040000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G285200 chr6B 514116759 514120404 3645 True 6734.0 6734 100.0000 1 3646 1 chr6B.!!$R1 3645
1 TraesCS6B01G285200 chr6B 707204015 707204644 629 True 787.0 787 89.2230 3010 3640 1 chr6B.!!$R2 630
2 TraesCS6B01G285200 chr6D 312762609 312765048 2439 False 3042.0 3042 89.2270 516 3008 1 chr6D.!!$F2 2492
3 TraesCS6B01G285200 chr6A 449581443 449586188 4745 False 1603.5 2905 85.5945 1 3008 2 chr6A.!!$F1 3007
4 TraesCS6B01G285200 chr1B 375858081 375858717 636 True 950.0 950 93.5640 3010 3646 1 chr1B.!!$R1 636
5 TraesCS6B01G285200 chr1B 444005175 444005811 636 False 922.0 922 92.7790 3010 3646 1 chr1B.!!$F1 636
6 TraesCS6B01G285200 chr1B 573322161 573322763 602 True 839.0 839 91.7360 3010 3614 1 chr1B.!!$R2 604
7 TraesCS6B01G285200 chr2B 11410704 11411340 636 False 867.0 867 91.2090 3010 3646 1 chr2B.!!$F1 636
8 TraesCS6B01G285200 chr2B 575903796 575904462 666 False 375.0 375 78.0200 1224 1868 1 chr2B.!!$F2 644
9 TraesCS6B01G285200 chr5B 520861339 520861964 625 False 828.0 828 90.5750 3010 3633 1 chr5B.!!$F1 623
10 TraesCS6B01G285200 chr7B 110341276 110341902 626 True 806.0 806 89.8410 3010 3639 1 chr7B.!!$R1 629
11 TraesCS6B01G285200 chr4A 602392701 602393337 636 True 795.0 795 89.1680 3010 3646 1 chr4A.!!$R1 636
12 TraesCS6B01G285200 chr3B 99114870 99115492 622 False 774.0 774 89.0850 3010 3632 1 chr3B.!!$F1 622
13 TraesCS6B01G285200 chr2D 491429579 491430220 641 False 385.0 385 78.5290 1224 1856 1 chr2D.!!$F1 632
14 TraesCS6B01G285200 chr2A 635723011 635723643 632 False 254.5 272 87.4005 1224 1856 2 chr2A.!!$F1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.103208 GATCTTGGTCGATCGCTGGT 59.897 55.0 11.09 0.00 31.43 4.00 F
248 275 0.104120 TGCCCATCACGTCTAATCCG 59.896 55.0 0.00 0.00 0.00 4.18 F
291 318 0.107017 CGAAGGTTCATGGGGATGCT 60.107 55.0 0.00 0.00 0.00 3.79 F
611 2399 0.168128 GACGCGGAAAAATCCCACAG 59.832 55.0 12.47 0.00 0.00 3.66 F
1221 3023 0.178918 AGGAAGGGGGAGATCGATCC 60.179 60.0 21.66 9.25 38.76 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 3923 0.107831 TGGTTGTACTGGGTGCAGTC 59.892 55.000 0.0 0.0 36.68 3.51 R
2116 4017 1.338655 TGCTGTCGCTACTACAACACA 59.661 47.619 0.0 0.0 36.97 3.72 R
2211 4112 2.158871 ACCGAAAGCCAAGTTAGTCACA 60.159 45.455 0.0 0.0 0.00 3.58 R
2511 4419 0.391130 CGAGGAATGAGGACGCCAAA 60.391 55.000 0.0 0.0 0.00 3.28 R
2918 4826 0.320050 TGGTAGTGCTTCACATCGCA 59.680 50.000 0.0 0.0 36.74 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.580193 CGCGGTACCGACGGATCT 61.580 66.667 37.62 0.00 42.83 2.75
44 45 0.103208 GATCTTGGTCGATCGCTGGT 59.897 55.000 11.09 0.00 31.43 4.00
81 86 1.899814 AGCGAGTGAGTGATTGGGTAA 59.100 47.619 0.00 0.00 0.00 2.85
154 181 0.743097 GGGATGCATCAAGTTGGAGC 59.257 55.000 27.25 8.15 0.00 4.70
243 270 3.205338 CATTTCATGCCCATCACGTCTA 58.795 45.455 0.00 0.00 0.00 2.59
244 271 3.342377 TTTCATGCCCATCACGTCTAA 57.658 42.857 0.00 0.00 0.00 2.10
245 272 3.558931 TTCATGCCCATCACGTCTAAT 57.441 42.857 0.00 0.00 0.00 1.73
246 273 3.111853 TCATGCCCATCACGTCTAATC 57.888 47.619 0.00 0.00 0.00 1.75
247 274 2.146342 CATGCCCATCACGTCTAATCC 58.854 52.381 0.00 0.00 0.00 3.01
248 275 0.104120 TGCCCATCACGTCTAATCCG 59.896 55.000 0.00 0.00 0.00 4.18
249 276 0.600255 GCCCATCACGTCTAATCCGG 60.600 60.000 0.00 0.00 0.00 5.14
252 279 1.270305 CCATCACGTCTAATCCGGCAT 60.270 52.381 0.00 0.00 0.00 4.40
253 280 1.794701 CATCACGTCTAATCCGGCATG 59.205 52.381 0.00 0.00 0.00 4.06
255 282 1.067060 TCACGTCTAATCCGGCATGAG 59.933 52.381 0.00 0.00 0.00 2.90
256 283 1.112113 ACGTCTAATCCGGCATGAGT 58.888 50.000 0.00 0.00 0.00 3.41
257 284 1.480954 ACGTCTAATCCGGCATGAGTT 59.519 47.619 0.00 0.00 0.00 3.01
258 285 2.093658 ACGTCTAATCCGGCATGAGTTT 60.094 45.455 0.00 0.00 0.00 2.66
259 286 2.540101 CGTCTAATCCGGCATGAGTTTC 59.460 50.000 0.00 0.00 0.00 2.78
274 301 3.889538 TGAGTTTCTTTCCTCAGACTCGA 59.110 43.478 0.00 0.00 37.04 4.04
278 305 2.877866 TCTTTCCTCAGACTCGAAGGT 58.122 47.619 0.18 0.00 0.00 3.50
282 309 2.808919 TCCTCAGACTCGAAGGTTCAT 58.191 47.619 0.18 0.00 0.00 2.57
286 313 0.905357 AGACTCGAAGGTTCATGGGG 59.095 55.000 0.00 0.00 0.00 4.96
289 316 1.210478 ACTCGAAGGTTCATGGGGATG 59.790 52.381 0.00 0.00 0.00 3.51
290 317 0.107214 TCGAAGGTTCATGGGGATGC 60.107 55.000 0.00 0.00 0.00 3.91
291 318 0.107017 CGAAGGTTCATGGGGATGCT 60.107 55.000 0.00 0.00 0.00 3.79
292 319 1.140852 CGAAGGTTCATGGGGATGCTA 59.859 52.381 0.00 0.00 0.00 3.49
293 320 2.808202 CGAAGGTTCATGGGGATGCTAG 60.808 54.545 0.00 0.00 0.00 3.42
294 321 1.898863 AGGTTCATGGGGATGCTAGT 58.101 50.000 0.00 0.00 0.00 2.57
298 325 4.416848 AGGTTCATGGGGATGCTAGTATTT 59.583 41.667 0.00 0.00 0.00 1.40
308 335 5.278660 GGGATGCTAGTATTTGGCAAGATTG 60.279 44.000 0.00 0.00 39.46 2.67
309 336 5.278660 GGATGCTAGTATTTGGCAAGATTGG 60.279 44.000 0.00 0.00 39.46 3.16
331 358 6.757237 TGGCACAACATCAAAATTTACAGAT 58.243 32.000 0.00 0.00 31.92 2.90
334 361 7.360269 GGCACAACATCAAAATTTACAGATTGG 60.360 37.037 0.00 0.00 0.00 3.16
337 364 9.260002 ACAACATCAAAATTTACAGATTGGTTC 57.740 29.630 0.00 0.00 0.00 3.62
342 369 7.881142 TCAAAATTTACAGATTGGTTCATCGT 58.119 30.769 0.00 0.00 0.00 3.73
345 372 9.620660 AAAATTTACAGATTGGTTCATCGTTAC 57.379 29.630 0.00 0.00 0.00 2.50
352 379 5.405571 AGATTGGTTCATCGTTACGATATGC 59.594 40.000 20.09 11.96 45.19 3.14
353 380 4.048241 TGGTTCATCGTTACGATATGCA 57.952 40.909 20.09 0.00 45.19 3.96
355 382 4.049186 GGTTCATCGTTACGATATGCAGT 58.951 43.478 20.09 0.00 45.19 4.40
356 383 4.148348 GGTTCATCGTTACGATATGCAGTC 59.852 45.833 20.09 6.78 45.19 3.51
357 384 4.561735 TCATCGTTACGATATGCAGTCA 57.438 40.909 20.09 0.00 45.19 3.41
358 385 4.927422 TCATCGTTACGATATGCAGTCAA 58.073 39.130 20.09 0.00 45.19 3.18
359 386 5.344884 TCATCGTTACGATATGCAGTCAAA 58.655 37.500 20.09 0.00 45.19 2.69
360 387 5.808030 TCATCGTTACGATATGCAGTCAAAA 59.192 36.000 20.09 0.00 45.19 2.44
361 388 5.696260 TCGTTACGATATGCAGTCAAAAG 57.304 39.130 2.33 0.00 0.00 2.27
362 389 4.565166 TCGTTACGATATGCAGTCAAAAGG 59.435 41.667 2.33 0.00 0.00 3.11
363 390 4.328983 CGTTACGATATGCAGTCAAAAGGT 59.671 41.667 0.00 0.00 0.00 3.50
364 391 5.163893 CGTTACGATATGCAGTCAAAAGGTT 60.164 40.000 0.00 0.00 0.00 3.50
366 393 7.399523 GTTACGATATGCAGTCAAAAGGTTAG 58.600 38.462 0.00 0.00 0.00 2.34
367 394 5.730550 ACGATATGCAGTCAAAAGGTTAGA 58.269 37.500 0.00 0.00 0.00 2.10
369 396 5.580691 CGATATGCAGTCAAAAGGTTAGACA 59.419 40.000 0.00 0.00 34.80 3.41
370 397 6.237942 CGATATGCAGTCAAAAGGTTAGACAG 60.238 42.308 0.00 0.00 34.80 3.51
371 398 3.476552 TGCAGTCAAAAGGTTAGACAGG 58.523 45.455 0.00 0.00 34.80 4.00
379 953 7.017254 AGTCAAAAGGTTAGACAGGGAAGATTA 59.983 37.037 0.00 0.00 34.80 1.75
388 962 4.353191 AGACAGGGAAGATTATGATGGCAT 59.647 41.667 0.00 0.00 38.54 4.40
392 966 4.018050 AGGGAAGATTATGATGGCATACCC 60.018 45.833 0.00 0.00 38.03 3.69
393 967 3.941483 GGAAGATTATGATGGCATACCCG 59.059 47.826 0.00 0.00 36.74 5.28
400 974 0.464036 GATGGCATACCCGACTCACA 59.536 55.000 0.00 0.00 35.87 3.58
409 983 2.842457 ACCCGACTCACAAGGTTAAAC 58.158 47.619 0.00 0.00 0.00 2.01
410 984 2.148768 CCCGACTCACAAGGTTAAACC 58.851 52.381 0.00 0.00 38.99 3.27
447 1021 9.726232 ATGAAAGTGTTATTCATTCATCAATCG 57.274 29.630 0.00 0.00 43.19 3.34
448 1022 8.729756 TGAAAGTGTTATTCATTCATCAATCGT 58.270 29.630 0.00 0.00 32.10 3.73
449 1023 9.214953 GAAAGTGTTATTCATTCATCAATCGTC 57.785 33.333 0.00 0.00 0.00 4.20
450 1024 7.848223 AGTGTTATTCATTCATCAATCGTCA 57.152 32.000 0.00 0.00 0.00 4.35
451 1025 7.688372 AGTGTTATTCATTCATCAATCGTCAC 58.312 34.615 0.00 0.00 0.00 3.67
465 1527 1.741706 TCGTCACACGAGGACTATTCC 59.258 52.381 0.00 0.00 46.73 3.01
468 1530 5.504806 CGTCACACGAGGACTATTCCGTT 62.505 52.174 0.00 0.00 46.05 4.44
481 1543 1.355971 TTCCGTTGACAAGCGCTATC 58.644 50.000 12.05 12.89 0.00 2.08
482 1544 0.459585 TCCGTTGACAAGCGCTATCC 60.460 55.000 12.05 2.71 0.00 2.59
521 1583 0.813821 CGAGGTGCATCAGAGTCTCA 59.186 55.000 0.00 0.00 0.00 3.27
522 1584 1.202279 CGAGGTGCATCAGAGTCTCAG 60.202 57.143 0.00 0.00 0.00 3.35
529 1591 2.672381 GCATCAGAGTCTCAGCTTTCAC 59.328 50.000 1.94 0.00 0.00 3.18
531 1593 1.270826 TCAGAGTCTCAGCTTTCACGG 59.729 52.381 1.94 0.00 0.00 4.94
539 1601 2.548057 CTCAGCTTTCACGGCACTTTTA 59.452 45.455 0.00 0.00 0.00 1.52
544 1606 3.304391 GCTTTCACGGCACTTTTATGTGA 60.304 43.478 0.00 0.00 40.12 3.58
546 1608 1.804151 TCACGGCACTTTTATGTGAGC 59.196 47.619 0.00 0.00 40.12 4.26
549 1611 3.062639 CACGGCACTTTTATGTGAGCTAG 59.937 47.826 0.00 0.00 40.12 3.42
556 1618 4.154918 ACTTTTATGTGAGCTAGCTTGCAC 59.845 41.667 23.20 23.20 34.99 4.57
611 2399 0.168128 GACGCGGAAAAATCCCACAG 59.832 55.000 12.47 0.00 0.00 3.66
612 2400 0.250553 ACGCGGAAAAATCCCACAGA 60.251 50.000 12.47 0.00 0.00 3.41
613 2401 1.094785 CGCGGAAAAATCCCACAGAT 58.905 50.000 0.00 0.00 36.48 2.90
615 2403 1.064060 GCGGAAAAATCCCACAGATCG 59.936 52.381 0.00 0.00 32.47 3.69
617 2405 2.351726 CGGAAAAATCCCACAGATCGAC 59.648 50.000 0.00 0.00 32.47 4.20
630 2418 2.169352 CAGATCGACAAGTCCCCAGAAT 59.831 50.000 0.00 0.00 0.00 2.40
639 2427 4.850386 ACAAGTCCCCAGAATTAGTAACCT 59.150 41.667 0.00 0.00 0.00 3.50
675 2463 1.090625 TCAACACCCGAACAACCACG 61.091 55.000 0.00 0.00 0.00 4.94
691 2480 1.227853 ACGGAAACAGGAGTGGCAC 60.228 57.895 10.29 10.29 0.00 5.01
706 2496 3.443045 CACGCCCATTCAGCCACC 61.443 66.667 0.00 0.00 0.00 4.61
707 2497 3.965258 ACGCCCATTCAGCCACCA 61.965 61.111 0.00 0.00 0.00 4.17
708 2498 2.676121 CGCCCATTCAGCCACCAA 60.676 61.111 0.00 0.00 0.00 3.67
710 2500 1.593265 GCCCATTCAGCCACCAAAG 59.407 57.895 0.00 0.00 0.00 2.77
718 2508 0.321564 CAGCCACCAAAGGACGATGA 60.322 55.000 0.00 0.00 0.00 2.92
723 2513 2.009774 CACCAAAGGACGATGATGGAC 58.990 52.381 0.00 0.00 35.16 4.02
730 2520 4.559862 AGGACGATGATGGACTTCTTTT 57.440 40.909 0.00 0.00 0.00 2.27
735 2525 6.187125 ACGATGATGGACTTCTTTTCAATG 57.813 37.500 0.00 0.00 0.00 2.82
742 2532 5.890334 TGGACTTCTTTTCAATGAACACAC 58.110 37.500 0.00 0.00 0.00 3.82
753 2544 2.319136 TGAACACACCGCTTTACAGT 57.681 45.000 0.00 0.00 0.00 3.55
774 2565 5.005394 CAGTTCCGTACTATCATCAAAACCG 59.995 44.000 0.00 0.00 34.56 4.44
776 2567 5.833406 TCCGTACTATCATCAAAACCGTA 57.167 39.130 0.00 0.00 0.00 4.02
779 2570 6.038356 CCGTACTATCATCAAAACCGTAACT 58.962 40.000 0.00 0.00 0.00 2.24
782 2573 9.241317 CGTACTATCATCAAAACCGTAACTTAT 57.759 33.333 0.00 0.00 0.00 1.73
816 2609 2.343101 GAAACCTAGCACATGTACGCA 58.657 47.619 10.46 0.00 0.00 5.24
895 2696 0.267356 ATCAGGGAGGGAGGGAGAAG 59.733 60.000 0.00 0.00 0.00 2.85
972 2773 0.319297 GTCAGGTCGGCAAAGTACGT 60.319 55.000 0.00 0.00 0.00 3.57
975 2776 1.068055 CAGGTCGGCAAAGTACGTACT 60.068 52.381 22.45 22.45 38.39 2.73
987 2788 3.216800 AGTACGTACTCACACTTGACCA 58.783 45.455 22.45 0.00 0.00 4.02
1025 2826 4.545706 CCATGCTTAGCGCCCCGA 62.546 66.667 2.29 0.00 38.05 5.14
1028 2829 1.598130 ATGCTTAGCGCCCCGAATC 60.598 57.895 2.29 0.00 38.05 2.52
1029 2830 3.338676 GCTTAGCGCCCCGAATCG 61.339 66.667 2.29 0.00 0.00 3.34
1091 2892 4.109766 CTCACGTTTATCTTCCACGCATA 58.890 43.478 0.00 0.00 37.44 3.14
1092 2893 3.861113 TCACGTTTATCTTCCACGCATAC 59.139 43.478 0.00 0.00 37.44 2.39
1096 2897 4.745125 CGTTTATCTTCCACGCATACATCT 59.255 41.667 0.00 0.00 0.00 2.90
1102 2903 6.255596 TCTTCCACGCATACATCTATCTAC 57.744 41.667 0.00 0.00 0.00 2.59
1103 2904 6.004574 TCTTCCACGCATACATCTATCTACT 58.995 40.000 0.00 0.00 0.00 2.57
1123 2925 1.066587 CTCCAGCTAGTAGCCGTGC 59.933 63.158 18.65 0.00 43.77 5.34
1221 3023 0.178918 AGGAAGGGGGAGATCGATCC 60.179 60.000 21.66 9.25 38.76 3.36
1433 3269 0.835276 TGCCAGGTCAGGATCAGATG 59.165 55.000 0.00 0.00 0.00 2.90
1474 3322 1.943730 TTGTGGCTTCTGTGGGGGTT 61.944 55.000 0.00 0.00 0.00 4.11
1496 3348 1.337354 TGATTGCCGTGAAAGTAGCGA 60.337 47.619 0.00 0.00 0.00 4.93
1497 3349 1.730064 GATTGCCGTGAAAGTAGCGAA 59.270 47.619 0.00 0.00 0.00 4.70
1498 3350 0.863144 TTGCCGTGAAAGTAGCGAAC 59.137 50.000 0.00 0.00 0.00 3.95
1499 3351 1.279527 TGCCGTGAAAGTAGCGAACG 61.280 55.000 0.00 0.00 0.00 3.95
1500 3352 1.005294 GCCGTGAAAGTAGCGAACGA 61.005 55.000 0.00 0.00 36.38 3.85
1506 3358 0.668401 AAAGTAGCGAACGAACGGGG 60.668 55.000 0.00 0.00 0.00 5.73
1516 3368 1.294138 CGAACGGGGGCTTAAGTCA 59.706 57.895 9.72 0.00 0.00 3.41
1893 3790 4.760047 GCTTCCGCCGGCTTCTCA 62.760 66.667 26.68 2.47 0.00 3.27
1910 3807 1.006102 CATCAGGCGGATCGTACCC 60.006 63.158 0.00 0.00 32.57 3.69
1926 3823 2.669569 CCGGTTGGTGCCACTGAG 60.670 66.667 0.00 0.00 0.00 3.35
2020 3918 2.812542 TTCCGGTCACGTCTGCATCG 62.813 60.000 0.00 9.35 38.78 3.84
2021 3919 2.880879 CGGTCACGTCTGCATCGG 60.881 66.667 14.18 5.41 34.81 4.18
2047 3945 2.238521 CTGCACCCAGTACAACCATTT 58.761 47.619 0.00 0.00 34.31 2.32
2116 4017 0.464373 CTTGCACACACTGGTCCAGT 60.464 55.000 19.42 19.42 46.51 4.00
2134 4035 2.980476 CAGTGTGTTGTAGTAGCGACAG 59.020 50.000 0.00 0.00 33.80 3.51
2179 4080 1.069022 CACCATTTTGGACACGAGCAG 60.069 52.381 0.00 0.00 40.96 4.24
2201 4102 6.709397 GCAGAATTTACATCTCTGGATCATCA 59.291 38.462 0.00 0.00 37.62 3.07
2203 4104 8.775527 CAGAATTTACATCTCTGGATCATCAAG 58.224 37.037 0.00 0.00 34.24 3.02
2204 4105 7.444792 AGAATTTACATCTCTGGATCATCAAGC 59.555 37.037 0.00 0.00 0.00 4.01
2211 4112 2.842496 TCTGGATCATCAAGCAGAACCT 59.158 45.455 0.00 0.00 0.00 3.50
2435 4340 1.328680 CTGTGTTATGCAGTGGATCGC 59.671 52.381 0.00 0.00 0.00 4.58
2489 4397 2.359900 AGATGATGTTGTTTCGGGCTC 58.640 47.619 0.00 0.00 0.00 4.70
2511 4419 0.467290 TTTCTGGGTTTTGCGCTCCT 60.467 50.000 9.73 0.00 0.00 3.69
2513 4421 0.467290 TCTGGGTTTTGCGCTCCTTT 60.467 50.000 9.73 0.00 0.00 3.11
2537 4445 1.069358 GTCCTCATTCCTCGGGATGTC 59.931 57.143 4.20 0.00 0.00 3.06
2597 4505 4.947388 TCTCCGCACCTTTATATGCTTTTT 59.053 37.500 0.00 0.00 39.79 1.94
2616 4524 4.961438 TTTTCCTACCTGGTTCGTAAGT 57.039 40.909 3.84 0.00 37.07 2.24
2686 4594 5.505173 ACAGTTTGGTCAGAAGTTGAATG 57.495 39.130 0.00 0.00 37.61 2.67
2715 4623 2.607635 CTGTTTGTACTTGAGCGTGTGT 59.392 45.455 0.00 0.00 0.00 3.72
2751 4659 2.677836 TCTGATTGACTGTAAATGGCGC 59.322 45.455 0.00 0.00 0.00 6.53
2761 4669 0.033504 TAAATGGCGCGGAGAGATCC 59.966 55.000 8.83 0.00 0.00 3.36
2823 4731 1.273041 TGAAGCACCCCACTAGCTAGA 60.273 52.381 27.45 0.00 37.70 2.43
2873 4781 2.529389 GACACCCTCCACCACCCT 60.529 66.667 0.00 0.00 0.00 4.34
2936 4844 1.656652 ATGCGATGTGAAGCACTACC 58.343 50.000 0.00 0.00 46.83 3.18
2954 4862 1.299620 CACAGGCAACAAGCTGCAC 60.300 57.895 1.02 0.00 44.52 4.57
2965 4873 1.321805 AAGCTGCACCAGTGTTGCAA 61.322 50.000 16.63 0.00 38.15 4.08
2974 4882 2.946329 ACCAGTGTTGCAACATACGAAA 59.054 40.909 33.16 7.51 41.59 3.46
3101 5010 3.001514 GGCCATGCTCCTTCCTCA 58.998 61.111 0.00 0.00 0.00 3.86
3273 5182 0.889186 ACCGGTGCCTGTTGATCAAC 60.889 55.000 28.10 28.10 41.50 3.18
3556 5467 1.904865 ACGGACACGAAGGCCACTA 60.905 57.895 5.01 0.00 44.60 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.065928 GCGATCGACCAAGATCCGT 59.934 57.895 21.57 0.00 42.94 4.69
29 30 1.265635 CAAAAACCAGCGATCGACCAA 59.734 47.619 21.57 0.00 0.00 3.67
120 125 2.948315 GCATCCCTCTTCAACTTGGATC 59.052 50.000 0.00 0.00 33.60 3.36
154 181 2.280628 GGCTCCGACAATAAAGACAGG 58.719 52.381 0.00 0.00 0.00 4.00
198 225 2.038813 TGATGGACGGAGGGCAGA 59.961 61.111 0.00 0.00 0.00 4.26
243 270 2.755103 GGAAAGAAACTCATGCCGGATT 59.245 45.455 5.05 0.00 0.00 3.01
244 271 2.025887 AGGAAAGAAACTCATGCCGGAT 60.026 45.455 5.05 0.00 0.00 4.18
245 272 1.351017 AGGAAAGAAACTCATGCCGGA 59.649 47.619 5.05 0.00 0.00 5.14
246 273 1.740025 GAGGAAAGAAACTCATGCCGG 59.260 52.381 0.00 0.00 33.95 6.13
247 274 2.417933 CTGAGGAAAGAAACTCATGCCG 59.582 50.000 0.00 0.00 42.33 5.69
248 275 3.438434 GTCTGAGGAAAGAAACTCATGCC 59.562 47.826 0.00 0.00 42.33 4.40
249 276 4.322567 AGTCTGAGGAAAGAAACTCATGC 58.677 43.478 0.00 0.00 42.33 4.06
252 279 3.889538 TCGAGTCTGAGGAAAGAAACTCA 59.110 43.478 0.00 0.00 41.13 3.41
253 280 4.506886 TCGAGTCTGAGGAAAGAAACTC 57.493 45.455 0.00 0.00 0.00 3.01
255 282 3.991121 CCTTCGAGTCTGAGGAAAGAAAC 59.009 47.826 3.23 0.00 0.00 2.78
256 283 3.641906 ACCTTCGAGTCTGAGGAAAGAAA 59.358 43.478 13.76 0.00 0.00 2.52
257 284 3.231818 ACCTTCGAGTCTGAGGAAAGAA 58.768 45.455 13.76 0.00 0.00 2.52
258 285 2.877866 ACCTTCGAGTCTGAGGAAAGA 58.122 47.619 13.76 0.00 0.00 2.52
259 286 3.005897 TGAACCTTCGAGTCTGAGGAAAG 59.994 47.826 13.76 0.00 0.00 2.62
274 301 2.208872 ACTAGCATCCCCATGAACCTT 58.791 47.619 0.00 0.00 30.57 3.50
278 305 4.728772 CCAAATACTAGCATCCCCATGAA 58.271 43.478 0.00 0.00 30.57 2.57
282 309 1.849692 TGCCAAATACTAGCATCCCCA 59.150 47.619 0.00 0.00 0.00 4.96
286 313 5.766222 CCAATCTTGCCAAATACTAGCATC 58.234 41.667 0.00 0.00 36.20 3.91
289 316 3.381272 TGCCAATCTTGCCAAATACTAGC 59.619 43.478 0.00 0.00 0.00 3.42
290 317 4.398988 TGTGCCAATCTTGCCAAATACTAG 59.601 41.667 0.00 0.00 0.00 2.57
291 318 4.339748 TGTGCCAATCTTGCCAAATACTA 58.660 39.130 0.00 0.00 0.00 1.82
292 319 3.164268 TGTGCCAATCTTGCCAAATACT 58.836 40.909 0.00 0.00 0.00 2.12
293 320 3.591196 TGTGCCAATCTTGCCAAATAC 57.409 42.857 0.00 0.00 0.00 1.89
294 321 3.323115 TGTTGTGCCAATCTTGCCAAATA 59.677 39.130 0.00 0.00 0.00 1.40
298 325 1.273048 GATGTTGTGCCAATCTTGCCA 59.727 47.619 0.00 0.00 0.00 4.92
308 335 7.360269 CCAATCTGTAAATTTTGATGTTGTGCC 60.360 37.037 0.00 0.00 0.00 5.01
309 336 7.171337 ACCAATCTGTAAATTTTGATGTTGTGC 59.829 33.333 0.00 0.00 0.00 4.57
310 337 8.592105 ACCAATCTGTAAATTTTGATGTTGTG 57.408 30.769 0.00 0.00 0.00 3.33
315 342 8.800972 CGATGAACCAATCTGTAAATTTTGATG 58.199 33.333 0.00 0.00 0.00 3.07
324 351 5.712004 TCGTAACGATGAACCAATCTGTAA 58.288 37.500 0.00 0.00 0.00 2.41
329 356 5.176774 TGCATATCGTAACGATGAACCAATC 59.823 40.000 0.00 0.00 46.43 2.67
331 358 4.434520 TGCATATCGTAACGATGAACCAA 58.565 39.130 0.00 0.00 46.43 3.67
334 361 4.738252 TGACTGCATATCGTAACGATGAAC 59.262 41.667 0.00 0.00 46.43 3.18
337 364 5.635549 TTTGACTGCATATCGTAACGATG 57.364 39.130 0.00 0.00 46.43 3.84
342 369 7.277098 GTCTAACCTTTTGACTGCATATCGTAA 59.723 37.037 0.00 0.00 0.00 3.18
345 372 5.580691 TGTCTAACCTTTTGACTGCATATCG 59.419 40.000 0.00 0.00 0.00 2.92
352 379 4.351874 TCCCTGTCTAACCTTTTGACTG 57.648 45.455 2.92 2.48 0.00 3.51
353 380 4.658901 TCTTCCCTGTCTAACCTTTTGACT 59.341 41.667 2.92 0.00 0.00 3.41
355 382 5.843019 ATCTTCCCTGTCTAACCTTTTGA 57.157 39.130 0.00 0.00 0.00 2.69
356 383 7.829211 TCATAATCTTCCCTGTCTAACCTTTTG 59.171 37.037 0.00 0.00 0.00 2.44
357 384 7.928873 TCATAATCTTCCCTGTCTAACCTTTT 58.071 34.615 0.00 0.00 0.00 2.27
358 385 7.510675 TCATAATCTTCCCTGTCTAACCTTT 57.489 36.000 0.00 0.00 0.00 3.11
359 386 7.420680 CCATCATAATCTTCCCTGTCTAACCTT 60.421 40.741 0.00 0.00 0.00 3.50
360 387 6.043706 CCATCATAATCTTCCCTGTCTAACCT 59.956 42.308 0.00 0.00 0.00 3.50
361 388 6.234177 CCATCATAATCTTCCCTGTCTAACC 58.766 44.000 0.00 0.00 0.00 2.85
362 389 5.703130 GCCATCATAATCTTCCCTGTCTAAC 59.297 44.000 0.00 0.00 0.00 2.34
363 390 5.369404 TGCCATCATAATCTTCCCTGTCTAA 59.631 40.000 0.00 0.00 0.00 2.10
364 391 4.907269 TGCCATCATAATCTTCCCTGTCTA 59.093 41.667 0.00 0.00 0.00 2.59
366 393 4.090761 TGCCATCATAATCTTCCCTGTC 57.909 45.455 0.00 0.00 0.00 3.51
367 394 4.736611 ATGCCATCATAATCTTCCCTGT 57.263 40.909 0.00 0.00 0.00 4.00
369 396 4.018050 GGGTATGCCATCATAATCTTCCCT 60.018 45.833 1.04 0.00 36.96 4.20
370 397 4.273318 GGGTATGCCATCATAATCTTCCC 58.727 47.826 1.04 0.00 36.96 3.97
371 398 3.941483 CGGGTATGCCATCATAATCTTCC 59.059 47.826 1.04 0.00 36.96 3.46
379 953 1.070758 GTGAGTCGGGTATGCCATCAT 59.929 52.381 1.04 0.00 36.17 2.45
388 962 3.244181 GGTTTAACCTTGTGAGTCGGGTA 60.244 47.826 6.92 0.00 34.73 3.69
424 998 8.729756 TGACGATTGATGAATGAATAACACTTT 58.270 29.630 0.00 0.00 0.00 2.66
433 1007 4.241681 TCGTGTGACGATTGATGAATGAA 58.758 39.130 0.00 0.00 46.73 2.57
446 1020 1.531264 CGGAATAGTCCTCGTGTGACG 60.531 57.143 7.75 0.00 42.44 4.35
447 1021 1.471684 ACGGAATAGTCCTCGTGTGAC 59.528 52.381 7.75 0.00 42.44 3.67
448 1022 1.830279 ACGGAATAGTCCTCGTGTGA 58.170 50.000 7.75 0.00 42.44 3.58
449 1023 2.094906 TCAACGGAATAGTCCTCGTGTG 60.095 50.000 7.75 3.54 42.44 3.82
450 1024 2.094854 GTCAACGGAATAGTCCTCGTGT 60.095 50.000 7.75 0.00 42.44 4.49
451 1025 2.094906 TGTCAACGGAATAGTCCTCGTG 60.095 50.000 7.75 2.74 42.44 4.35
457 1519 1.060698 GCGCTTGTCAACGGAATAGTC 59.939 52.381 0.00 0.00 0.00 2.59
461 1523 1.933853 GATAGCGCTTGTCAACGGAAT 59.066 47.619 18.68 0.00 0.00 3.01
463 1525 0.459585 GGATAGCGCTTGTCAACGGA 60.460 55.000 18.68 0.00 0.00 4.69
464 1526 0.739462 TGGATAGCGCTTGTCAACGG 60.739 55.000 18.68 0.00 0.00 4.44
465 1527 0.647410 CTGGATAGCGCTTGTCAACG 59.353 55.000 18.68 3.14 0.00 4.10
468 1530 4.521075 GCTGGATAGCGCTTGTCA 57.479 55.556 18.68 10.68 40.67 3.58
498 1560 3.746949 CTCTGATGCACCTCGGCCC 62.747 68.421 0.00 0.00 0.00 5.80
500 1562 1.520342 GACTCTGATGCACCTCGGC 60.520 63.158 0.00 0.00 0.00 5.54
501 1563 0.102120 GAGACTCTGATGCACCTCGG 59.898 60.000 0.00 0.00 0.00 4.63
502 1564 0.813821 TGAGACTCTGATGCACCTCG 59.186 55.000 3.68 0.00 0.00 4.63
503 1565 1.471327 GCTGAGACTCTGATGCACCTC 60.471 57.143 13.11 0.00 0.00 3.85
504 1566 0.536260 GCTGAGACTCTGATGCACCT 59.464 55.000 13.11 0.00 0.00 4.00
505 1567 0.536260 AGCTGAGACTCTGATGCACC 59.464 55.000 13.11 0.00 0.00 5.01
509 1571 2.922387 CGTGAAAGCTGAGACTCTGATG 59.078 50.000 13.11 0.00 0.00 3.07
521 1583 2.884639 ACATAAAAGTGCCGTGAAAGCT 59.115 40.909 0.00 0.00 0.00 3.74
522 1584 2.979813 CACATAAAAGTGCCGTGAAAGC 59.020 45.455 0.00 0.00 32.04 3.51
529 1591 2.030946 GCTAGCTCACATAAAAGTGCCG 59.969 50.000 7.70 0.00 39.35 5.69
531 1593 4.656041 CAAGCTAGCTCACATAAAAGTGC 58.344 43.478 19.65 0.00 39.35 4.40
539 1601 0.393537 GGGTGCAAGCTAGCTCACAT 60.394 55.000 28.11 9.48 32.02 3.21
544 1606 4.785453 GCCGGGTGCAAGCTAGCT 62.785 66.667 12.68 12.68 40.77 3.32
611 2399 2.990066 ATTCTGGGGACTTGTCGATC 57.010 50.000 0.00 0.00 0.00 3.69
612 2400 3.775316 ACTAATTCTGGGGACTTGTCGAT 59.225 43.478 0.00 0.00 0.00 3.59
613 2401 3.170717 ACTAATTCTGGGGACTTGTCGA 58.829 45.455 0.00 0.00 0.00 4.20
615 2403 5.045797 AGGTTACTAATTCTGGGGACTTGTC 60.046 44.000 0.00 0.00 0.00 3.18
617 2405 5.437191 AGGTTACTAATTCTGGGGACTTG 57.563 43.478 0.00 0.00 0.00 3.16
675 2463 2.617274 GCGTGCCACTCCTGTTTCC 61.617 63.158 0.00 0.00 0.00 3.13
691 2480 2.216750 CTTTGGTGGCTGAATGGGCG 62.217 60.000 0.00 0.00 34.31 6.13
706 2496 3.866651 AGAAGTCCATCATCGTCCTTTG 58.133 45.455 0.00 0.00 0.00 2.77
707 2497 4.559862 AAGAAGTCCATCATCGTCCTTT 57.440 40.909 0.00 0.00 0.00 3.11
708 2498 4.559862 AAAGAAGTCCATCATCGTCCTT 57.440 40.909 0.00 0.00 0.00 3.36
710 2500 4.253685 TGAAAAGAAGTCCATCATCGTCC 58.746 43.478 0.00 0.00 0.00 4.79
718 2508 6.461509 GGTGTGTTCATTGAAAAGAAGTCCAT 60.462 38.462 0.00 0.00 0.00 3.41
723 2513 3.730715 GCGGTGTGTTCATTGAAAAGAAG 59.269 43.478 0.00 0.00 0.00 2.85
730 2520 3.206964 TGTAAAGCGGTGTGTTCATTGA 58.793 40.909 0.00 0.00 0.00 2.57
735 2525 2.032290 GGAACTGTAAAGCGGTGTGTTC 60.032 50.000 0.00 0.00 36.67 3.18
742 2532 2.358939 AGTACGGAACTGTAAAGCGG 57.641 50.000 0.00 0.00 36.93 5.52
753 2544 5.075858 ACGGTTTTGATGATAGTACGGAA 57.924 39.130 0.00 0.00 0.00 4.30
774 2565 3.126343 CGGGTGTGGCTTTCATAAGTTAC 59.874 47.826 0.00 0.00 33.74 2.50
776 2567 2.159382 CGGGTGTGGCTTTCATAAGTT 58.841 47.619 0.00 0.00 33.74 2.66
779 2570 2.554893 GTTTCGGGTGTGGCTTTCATAA 59.445 45.455 0.00 0.00 0.00 1.90
782 2573 1.104577 GGTTTCGGGTGTGGCTTTCA 61.105 55.000 0.00 0.00 0.00 2.69
783 2574 0.822121 AGGTTTCGGGTGTGGCTTTC 60.822 55.000 0.00 0.00 0.00 2.62
816 2609 0.664166 CGCTCTGCATTTTGCCGTTT 60.664 50.000 0.00 0.00 44.23 3.60
834 2627 4.111016 CTGTGGCTGCCATGCACG 62.111 66.667 26.22 9.08 35.28 5.34
835 2628 3.755628 CCTGTGGCTGCCATGCAC 61.756 66.667 26.22 12.44 35.28 4.57
837 2630 2.629424 TATCCCTGTGGCTGCCATGC 62.629 60.000 26.22 13.63 35.28 4.06
838 2631 0.111832 ATATCCCTGTGGCTGCCATG 59.888 55.000 26.22 19.54 35.28 3.66
839 2632 0.111832 CATATCCCTGTGGCTGCCAT 59.888 55.000 26.22 10.20 35.28 4.40
879 2680 1.031112 ATTCTTCTCCCTCCCTCCCT 58.969 55.000 0.00 0.00 0.00 4.20
880 2681 1.492599 CAATTCTTCTCCCTCCCTCCC 59.507 57.143 0.00 0.00 0.00 4.30
881 2682 2.171659 GTCAATTCTTCTCCCTCCCTCC 59.828 54.545 0.00 0.00 0.00 4.30
882 2683 2.840651 TGTCAATTCTTCTCCCTCCCTC 59.159 50.000 0.00 0.00 0.00 4.30
895 2696 0.984109 CGCGCCATGTTTGTCAATTC 59.016 50.000 0.00 0.00 0.00 2.17
972 2773 1.618837 GAGGCTGGTCAAGTGTGAGTA 59.381 52.381 0.00 0.00 33.27 2.59
975 2776 1.367471 CGAGGCTGGTCAAGTGTGA 59.633 57.895 0.00 0.00 0.00 3.58
987 2788 1.202313 GCGATTAAGTCAGACGAGGCT 60.202 52.381 0.00 0.00 0.00 4.58
1091 2892 7.324388 ACTAGCTGGAGTAGTAGATAGATGT 57.676 40.000 3.17 0.00 36.63 3.06
1123 2925 2.097589 CGTAGTACGTGTTGCAACTGTG 60.098 50.000 28.61 19.81 36.74 3.66
1257 3078 3.764466 CAGAAGACCGAGGCCGCT 61.764 66.667 4.53 0.00 0.00 5.52
1433 3269 5.986501 ACCCAGAAGATCGAGTTATATCC 57.013 43.478 0.00 0.00 0.00 2.59
1474 3322 2.346803 GCTACTTTCACGGCAATCAGA 58.653 47.619 0.00 0.00 0.00 3.27
1496 3348 0.321034 GACTTAAGCCCCCGTTCGTT 60.321 55.000 1.29 0.00 0.00 3.85
1497 3349 1.294459 GACTTAAGCCCCCGTTCGT 59.706 57.895 1.29 0.00 0.00 3.85
1498 3350 0.320946 TTGACTTAAGCCCCCGTTCG 60.321 55.000 1.29 0.00 0.00 3.95
1499 3351 1.271217 ACTTGACTTAAGCCCCCGTTC 60.271 52.381 1.29 0.00 40.16 3.95
1500 3352 0.769247 ACTTGACTTAAGCCCCCGTT 59.231 50.000 1.29 0.00 40.16 4.44
1506 3358 1.537202 CCAGCACACTTGACTTAAGCC 59.463 52.381 1.29 0.00 40.16 4.35
1516 3368 2.596631 CTGCAGCCCAGCACACTT 60.597 61.111 0.00 0.00 40.11 3.16
1695 3553 0.677098 TCGTGTTCTCCTCCTCCGAG 60.677 60.000 0.00 0.00 35.72 4.63
1893 3790 2.561956 CGGGTACGATCCGCCTGAT 61.562 63.158 0.00 0.00 44.60 2.90
1910 3807 3.357079 GCTCAGTGGCACCAACCG 61.357 66.667 15.27 0.00 0.00 4.44
2025 3923 0.107831 TGGTTGTACTGGGTGCAGTC 59.892 55.000 0.00 0.00 36.68 3.51
2047 3945 3.629539 CCACAAACCATCCCCATAATGGA 60.630 47.826 9.04 0.00 45.51 3.41
2116 4017 1.338655 TGCTGTCGCTACTACAACACA 59.661 47.619 0.00 0.00 36.97 3.72
2134 4035 2.191641 GTGGGCCTCTGAGGATGC 59.808 66.667 27.53 11.61 37.67 3.91
2174 4075 6.286758 TGATCCAGAGATGTAAATTCTGCTC 58.713 40.000 0.00 0.00 37.58 4.26
2179 4080 7.228108 TGCTTGATGATCCAGAGATGTAAATTC 59.772 37.037 0.00 0.00 30.90 2.17
2201 4102 4.130118 CAAGTTAGTCACAGGTTCTGCTT 58.870 43.478 0.00 0.00 34.37 3.91
2203 4104 2.808543 CCAAGTTAGTCACAGGTTCTGC 59.191 50.000 0.00 0.00 34.37 4.26
2204 4105 2.808543 GCCAAGTTAGTCACAGGTTCTG 59.191 50.000 0.00 0.00 37.52 3.02
2211 4112 2.158871 ACCGAAAGCCAAGTTAGTCACA 60.159 45.455 0.00 0.00 0.00 3.58
2427 4332 3.187227 CCAGCATATTAACTGCGATCCAC 59.813 47.826 6.28 0.00 44.38 4.02
2435 4340 7.170489 CAGTCATGTACTCCAGCATATTAACTG 59.830 40.741 0.00 0.00 35.76 3.16
2489 4397 2.061028 GAGCGCAAAACCCAGAAATTG 58.939 47.619 11.47 0.00 0.00 2.32
2511 4419 0.391130 CGAGGAATGAGGACGCCAAA 60.391 55.000 0.00 0.00 0.00 3.28
2513 4421 2.721167 CCGAGGAATGAGGACGCCA 61.721 63.158 0.00 0.00 0.00 5.69
2597 4505 4.961438 AAACTTACGAACCAGGTAGGAA 57.039 40.909 0.00 0.00 41.22 3.36
2686 4594 2.872245 TCAAGTACAAACAGCTGCAGAC 59.128 45.455 20.43 9.11 0.00 3.51
2715 4623 4.225492 TCAATCAGATAACCGGTACCCAAA 59.775 41.667 8.00 0.00 0.00 3.28
2729 4637 3.313526 GCGCCATTTACAGTCAATCAGAT 59.686 43.478 0.00 0.00 0.00 2.90
2751 4659 1.480137 AGCTTCAGTTGGATCTCTCCG 59.520 52.381 0.00 0.00 45.37 4.63
2761 4669 3.005554 CACCCTCACATAGCTTCAGTTG 58.994 50.000 0.00 0.00 0.00 3.16
2823 4731 1.275291 ACAAGATTCGTCGTCCCACAT 59.725 47.619 0.00 0.00 0.00 3.21
2918 4826 0.320050 TGGTAGTGCTTCACATCGCA 59.680 50.000 0.00 0.00 36.74 5.10
2919 4827 0.721718 GTGGTAGTGCTTCACATCGC 59.278 55.000 0.00 0.00 36.74 4.58
2936 4844 1.299620 GTGCAGCTTGTTGCCTGTG 60.300 57.895 6.97 0.00 43.43 3.66
2954 4862 3.617540 TTTCGTATGTTGCAACACTGG 57.382 42.857 33.29 23.17 42.51 4.00
2965 4873 7.027161 GGTATTGCATCTTTGTTTTCGTATGT 58.973 34.615 0.00 0.00 0.00 2.29
3008 4917 3.151022 CAGGGGAGAGGAGCCGAC 61.151 72.222 0.00 0.00 0.00 4.79
3078 4987 3.667217 AAGGAGCATGGCCGCCATT 62.667 57.895 22.88 9.39 42.23 3.16
3101 5010 0.385390 CAACTTTTTGAGCACCGCCT 59.615 50.000 0.00 0.00 34.24 5.52
3146 5055 2.434884 CACGGTCGGCAGCATTCT 60.435 61.111 0.00 0.00 0.00 2.40
3273 5182 2.046988 TGGAGACGGTGCAGCATG 60.047 61.111 17.33 2.74 40.87 4.06
3463 5374 1.464997 GTGATCAAACCAGAAGGACGC 59.535 52.381 0.00 0.00 38.69 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.