Multiple sequence alignment - TraesCS6B01G285100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G285100 chr6B 100.000 4353 0 0 1 4353 513984677 513980325 0.000000e+00 8039.0
1 TraesCS6B01G285100 chr6B 95.282 763 36 0 3591 4353 164577210 164576448 0.000000e+00 1210.0
2 TraesCS6B01G285100 chr6B 94.889 763 38 1 3591 4353 474433228 474433989 0.000000e+00 1192.0
3 TraesCS6B01G285100 chr6A 94.643 3323 115 20 316 3593 449637694 449640998 0.000000e+00 5092.0
4 TraesCS6B01G285100 chr6A 91.398 93 8 0 1 93 449592996 449593088 1.270000e-25 128.0
5 TraesCS6B01G285100 chr6D 92.745 1461 86 9 2136 3593 312772163 312773606 0.000000e+00 2093.0
6 TraesCS6B01G285100 chr6D 88.089 806 58 17 1077 1872 312771385 312772162 0.000000e+00 922.0
7 TraesCS6B01G285100 chr6D 83.163 392 28 8 545 918 312770853 312771224 1.510000e-84 324.0
8 TraesCS6B01G285100 chr6D 94.815 135 5 2 934 1068 312771212 312771344 4.410000e-50 209.0
9 TraesCS6B01G285100 chr3D 95.151 763 37 0 3591 4353 349873909 349874671 0.000000e+00 1205.0
10 TraesCS6B01G285100 chr3D 79.762 336 50 12 28 358 595759090 595759412 1.220000e-55 228.0
11 TraesCS6B01G285100 chr7A 94.889 763 39 0 3591 4353 513559559 513560321 0.000000e+00 1194.0
12 TraesCS6B01G285100 chr7B 94.626 763 40 1 3591 4353 712793058 712792297 0.000000e+00 1181.0
13 TraesCS6B01G285100 chr7B 78.804 184 29 10 616 794 409174232 409174410 9.890000e-22 115.0
14 TraesCS6B01G285100 chr2B 94.364 763 42 1 3591 4353 95484634 95483873 0.000000e+00 1170.0
15 TraesCS6B01G285100 chr2B 91.045 67 3 3 546 610 776208192 776208127 2.160000e-13 87.9
16 TraesCS6B01G285100 chr7D 93.673 727 45 1 3628 4353 469239167 469238441 0.000000e+00 1086.0
17 TraesCS6B01G285100 chr5D 91.732 762 63 0 3592 4353 88499946 88500707 0.000000e+00 1059.0
18 TraesCS6B01G285100 chr4D 89.645 676 68 2 3591 4266 78433337 78432664 0.000000e+00 859.0
19 TraesCS6B01G285100 chr3B 80.547 329 58 3 28 353 798949449 798949774 9.350000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G285100 chr6B 513980325 513984677 4352 True 8039 8039 100.000 1 4353 1 chr6B.!!$R2 4352
1 TraesCS6B01G285100 chr6B 164576448 164577210 762 True 1210 1210 95.282 3591 4353 1 chr6B.!!$R1 762
2 TraesCS6B01G285100 chr6B 474433228 474433989 761 False 1192 1192 94.889 3591 4353 1 chr6B.!!$F1 762
3 TraesCS6B01G285100 chr6A 449637694 449640998 3304 False 5092 5092 94.643 316 3593 1 chr6A.!!$F2 3277
4 TraesCS6B01G285100 chr6D 312770853 312773606 2753 False 887 2093 89.703 545 3593 4 chr6D.!!$F1 3048
5 TraesCS6B01G285100 chr3D 349873909 349874671 762 False 1205 1205 95.151 3591 4353 1 chr3D.!!$F1 762
6 TraesCS6B01G285100 chr7A 513559559 513560321 762 False 1194 1194 94.889 3591 4353 1 chr7A.!!$F1 762
7 TraesCS6B01G285100 chr7B 712792297 712793058 761 True 1181 1181 94.626 3591 4353 1 chr7B.!!$R1 762
8 TraesCS6B01G285100 chr2B 95483873 95484634 761 True 1170 1170 94.364 3591 4353 1 chr2B.!!$R1 762
9 TraesCS6B01G285100 chr7D 469238441 469239167 726 True 1086 1086 93.673 3628 4353 1 chr7D.!!$R1 725
10 TraesCS6B01G285100 chr5D 88499946 88500707 761 False 1059 1059 91.732 3592 4353 1 chr5D.!!$F1 761
11 TraesCS6B01G285100 chr4D 78432664 78433337 673 True 859 859 89.645 3591 4266 1 chr4D.!!$R1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.031111 AGGTCGAGGGATTCATGGGA 60.031 55.0 0.00 0.00 0.00 4.37 F
216 217 0.034186 TGCATGGGAAGGTGATGGTC 60.034 55.0 0.00 0.00 0.00 4.02 F
274 275 0.304705 CTGTGTTGTGCTTCGACCAC 59.695 55.0 8.14 8.14 0.00 4.16 F
459 460 0.557729 CCTAGGCCCAACCCATGAAT 59.442 55.0 0.00 0.00 40.58 2.57 F
1487 1543 0.813610 TGAATTAGGCCCATCGCGTG 60.814 55.0 5.77 3.64 38.94 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1414 1470 0.032130 ATTCACGACATCCGGATCCG 59.968 55.000 27.65 27.65 43.93 4.18 R
1752 1809 0.374758 CAATCGACATTCCGTGCAGG 59.625 55.000 0.00 0.00 42.97 4.85 R
1940 2001 3.059352 ACATCCCAACTGCAGTAGTTC 57.941 47.619 22.01 0.00 46.55 3.01 R
1943 2004 4.271049 CGAATTACATCCCAACTGCAGTAG 59.729 45.833 22.01 14.70 0.00 2.57 R
3422 3492 1.168407 TCAGCACTGCTTGAACCAGC 61.168 55.000 0.00 0.00 36.40 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.110178 GGACGTGCGTTTCTCCCG 61.110 66.667 0.00 0.00 0.00 5.14
18 19 2.355481 GACGTGCGTTTCTCCCGT 60.355 61.111 0.00 0.00 0.00 5.28
19 20 2.355481 ACGTGCGTTTCTCCCGTC 60.355 61.111 0.00 0.00 0.00 4.79
20 21 2.355363 CGTGCGTTTCTCCCGTCA 60.355 61.111 0.00 0.00 0.00 4.35
21 22 1.736645 CGTGCGTTTCTCCCGTCAT 60.737 57.895 0.00 0.00 0.00 3.06
22 23 1.683790 CGTGCGTTTCTCCCGTCATC 61.684 60.000 0.00 0.00 0.00 2.92
23 24 1.445410 TGCGTTTCTCCCGTCATCG 60.445 57.895 0.00 0.00 0.00 3.84
24 25 1.445582 GCGTTTCTCCCGTCATCGT 60.446 57.895 0.00 0.00 35.01 3.73
25 26 1.012486 GCGTTTCTCCCGTCATCGTT 61.012 55.000 0.00 0.00 35.01 3.85
26 27 1.425412 CGTTTCTCCCGTCATCGTTT 58.575 50.000 0.00 0.00 35.01 3.60
27 28 1.126113 CGTTTCTCCCGTCATCGTTTG 59.874 52.381 0.00 0.00 35.01 2.93
28 29 2.409975 GTTTCTCCCGTCATCGTTTGA 58.590 47.619 0.00 0.00 35.01 2.69
35 36 4.590487 TCATCGTTTGACCTCGGC 57.410 55.556 0.00 0.00 0.00 5.54
36 37 1.445410 TCATCGTTTGACCTCGGCG 60.445 57.895 0.00 0.00 0.00 6.46
37 38 2.125673 ATCGTTTGACCTCGGCGG 60.126 61.111 7.21 0.00 39.35 6.13
45 46 3.716381 ACCTCGGCGGTTGGAATA 58.284 55.556 18.06 0.00 46.37 1.75
46 47 1.984817 ACCTCGGCGGTTGGAATAA 59.015 52.632 18.06 0.00 46.37 1.40
47 48 0.325602 ACCTCGGCGGTTGGAATAAA 59.674 50.000 18.06 0.00 46.37 1.40
48 49 1.064979 ACCTCGGCGGTTGGAATAAAT 60.065 47.619 18.06 0.00 46.37 1.40
49 50 2.021457 CCTCGGCGGTTGGAATAAATT 58.979 47.619 7.21 0.00 0.00 1.82
50 51 2.425668 CCTCGGCGGTTGGAATAAATTT 59.574 45.455 7.21 0.00 0.00 1.82
51 52 3.119280 CCTCGGCGGTTGGAATAAATTTT 60.119 43.478 7.21 0.00 0.00 1.82
52 53 4.099380 TCGGCGGTTGGAATAAATTTTC 57.901 40.909 7.21 0.00 0.00 2.29
53 54 3.119424 TCGGCGGTTGGAATAAATTTTCC 60.119 43.478 7.21 0.00 44.60 3.13
54 55 3.527533 GGCGGTTGGAATAAATTTTCCC 58.472 45.455 6.47 2.28 43.86 3.97
55 56 3.196901 GGCGGTTGGAATAAATTTTCCCT 59.803 43.478 6.47 0.00 43.86 4.20
56 57 4.403113 GGCGGTTGGAATAAATTTTCCCTA 59.597 41.667 6.47 0.00 43.86 3.53
57 58 5.451381 GGCGGTTGGAATAAATTTTCCCTAG 60.451 44.000 6.47 0.00 43.86 3.02
58 59 5.126545 GCGGTTGGAATAAATTTTCCCTAGT 59.873 40.000 6.47 0.00 43.86 2.57
59 60 6.679638 GCGGTTGGAATAAATTTTCCCTAGTC 60.680 42.308 6.47 0.00 43.86 2.59
60 61 6.183360 CGGTTGGAATAAATTTTCCCTAGTCC 60.183 42.308 6.47 2.61 43.86 3.85
61 62 6.895756 GGTTGGAATAAATTTTCCCTAGTCCT 59.104 38.462 6.47 0.00 43.86 3.85
62 63 7.147897 GGTTGGAATAAATTTTCCCTAGTCCTG 60.148 40.741 6.47 0.00 43.86 3.86
63 64 7.039722 TGGAATAAATTTTCCCTAGTCCTGT 57.960 36.000 6.47 0.00 43.86 4.00
64 65 7.116736 TGGAATAAATTTTCCCTAGTCCTGTC 58.883 38.462 6.47 0.00 43.86 3.51
65 66 7.036863 TGGAATAAATTTTCCCTAGTCCTGTCT 60.037 37.037 6.47 0.00 43.86 3.41
66 67 7.499563 GGAATAAATTTTCCCTAGTCCTGTCTC 59.500 40.741 0.00 0.00 39.46 3.36
67 68 4.846168 AATTTTCCCTAGTCCTGTCTCC 57.154 45.455 0.00 0.00 0.00 3.71
68 69 3.269592 TTTTCCCTAGTCCTGTCTCCA 57.730 47.619 0.00 0.00 0.00 3.86
69 70 3.491766 TTTCCCTAGTCCTGTCTCCAT 57.508 47.619 0.00 0.00 0.00 3.41
70 71 2.757894 TCCCTAGTCCTGTCTCCATC 57.242 55.000 0.00 0.00 0.00 3.51
71 72 2.218673 TCCCTAGTCCTGTCTCCATCT 58.781 52.381 0.00 0.00 0.00 2.90
72 73 2.175931 TCCCTAGTCCTGTCTCCATCTC 59.824 54.545 0.00 0.00 0.00 2.75
73 74 2.226330 CCTAGTCCTGTCTCCATCTCG 58.774 57.143 0.00 0.00 0.00 4.04
74 75 2.226330 CTAGTCCTGTCTCCATCTCGG 58.774 57.143 0.00 0.00 0.00 4.63
75 76 1.040339 AGTCCTGTCTCCATCTCGGC 61.040 60.000 0.00 0.00 33.14 5.54
76 77 1.000359 TCCTGTCTCCATCTCGGCA 60.000 57.895 0.00 0.00 33.14 5.69
77 78 0.397675 TCCTGTCTCCATCTCGGCAT 60.398 55.000 0.00 0.00 33.14 4.40
78 79 0.033228 CCTGTCTCCATCTCGGCATC 59.967 60.000 0.00 0.00 33.14 3.91
79 80 0.318529 CTGTCTCCATCTCGGCATCG 60.319 60.000 0.00 0.00 37.82 3.84
80 81 1.663074 GTCTCCATCTCGGCATCGC 60.663 63.158 0.00 0.00 36.13 4.58
81 82 2.356793 CTCCATCTCGGCATCGCC 60.357 66.667 0.00 0.00 46.75 5.54
103 104 3.528370 CGGCGAGGTCGAGGGATT 61.528 66.667 0.00 0.00 43.02 3.01
104 105 2.417936 GGCGAGGTCGAGGGATTC 59.582 66.667 2.94 0.00 43.02 2.52
105 106 2.423898 GGCGAGGTCGAGGGATTCA 61.424 63.158 2.94 0.00 43.02 2.57
106 107 1.742768 GCGAGGTCGAGGGATTCAT 59.257 57.895 2.94 0.00 43.02 2.57
107 108 0.598680 GCGAGGTCGAGGGATTCATG 60.599 60.000 2.94 0.00 43.02 3.07
108 109 0.032678 CGAGGTCGAGGGATTCATGG 59.967 60.000 0.00 0.00 43.02 3.66
109 110 0.394565 GAGGTCGAGGGATTCATGGG 59.605 60.000 0.00 0.00 0.00 4.00
110 111 0.031111 AGGTCGAGGGATTCATGGGA 60.031 55.000 0.00 0.00 0.00 4.37
111 112 0.394565 GGTCGAGGGATTCATGGGAG 59.605 60.000 0.00 0.00 0.00 4.30
112 113 1.414158 GTCGAGGGATTCATGGGAGA 58.586 55.000 0.00 0.00 0.00 3.71
113 114 1.974236 GTCGAGGGATTCATGGGAGAT 59.026 52.381 0.00 0.00 0.00 2.75
114 115 2.370189 GTCGAGGGATTCATGGGAGATT 59.630 50.000 0.00 0.00 0.00 2.40
115 116 2.369860 TCGAGGGATTCATGGGAGATTG 59.630 50.000 0.00 0.00 0.00 2.67
116 117 2.369860 CGAGGGATTCATGGGAGATTGA 59.630 50.000 0.00 0.00 0.00 2.57
117 118 3.181451 CGAGGGATTCATGGGAGATTGAA 60.181 47.826 0.00 0.00 36.38 2.69
118 119 4.506271 CGAGGGATTCATGGGAGATTGAAT 60.506 45.833 0.00 0.00 43.42 2.57
119 120 5.392125 GAGGGATTCATGGGAGATTGAATT 58.608 41.667 0.00 0.00 41.42 2.17
120 121 5.785123 AGGGATTCATGGGAGATTGAATTT 58.215 37.500 0.00 0.00 41.42 1.82
121 122 6.207532 AGGGATTCATGGGAGATTGAATTTT 58.792 36.000 0.00 0.00 41.42 1.82
122 123 6.099269 AGGGATTCATGGGAGATTGAATTTTG 59.901 38.462 0.00 0.00 41.42 2.44
123 124 6.126968 GGGATTCATGGGAGATTGAATTTTGT 60.127 38.462 0.00 0.00 41.42 2.83
124 125 7.333323 GGATTCATGGGAGATTGAATTTTGTT 58.667 34.615 0.00 0.00 41.42 2.83
125 126 7.279313 GGATTCATGGGAGATTGAATTTTGTTG 59.721 37.037 0.00 0.00 41.42 3.33
126 127 6.669125 TCATGGGAGATTGAATTTTGTTGT 57.331 33.333 0.00 0.00 0.00 3.32
127 128 7.065120 TCATGGGAGATTGAATTTTGTTGTT 57.935 32.000 0.00 0.00 0.00 2.83
128 129 7.507829 TCATGGGAGATTGAATTTTGTTGTTT 58.492 30.769 0.00 0.00 0.00 2.83
129 130 7.656948 TCATGGGAGATTGAATTTTGTTGTTTC 59.343 33.333 0.00 0.00 0.00 2.78
130 131 7.123355 TGGGAGATTGAATTTTGTTGTTTCT 57.877 32.000 0.00 0.00 0.00 2.52
131 132 7.563906 TGGGAGATTGAATTTTGTTGTTTCTT 58.436 30.769 0.00 0.00 0.00 2.52
132 133 8.046107 TGGGAGATTGAATTTTGTTGTTTCTTT 58.954 29.630 0.00 0.00 0.00 2.52
133 134 8.337532 GGGAGATTGAATTTTGTTGTTTCTTTG 58.662 33.333 0.00 0.00 0.00 2.77
134 135 8.337532 GGAGATTGAATTTTGTTGTTTCTTTGG 58.662 33.333 0.00 0.00 0.00 3.28
135 136 8.791327 AGATTGAATTTTGTTGTTTCTTTGGT 57.209 26.923 0.00 0.00 0.00 3.67
136 137 8.667463 AGATTGAATTTTGTTGTTTCTTTGGTG 58.333 29.630 0.00 0.00 0.00 4.17
137 138 6.175712 TGAATTTTGTTGTTTCTTTGGTGC 57.824 33.333 0.00 0.00 0.00 5.01
138 139 5.702670 TGAATTTTGTTGTTTCTTTGGTGCA 59.297 32.000 0.00 0.00 0.00 4.57
139 140 6.205464 TGAATTTTGTTGTTTCTTTGGTGCAA 59.795 30.769 0.00 0.00 0.00 4.08
140 141 6.566197 ATTTTGTTGTTTCTTTGGTGCAAA 57.434 29.167 0.00 0.00 0.00 3.68
141 142 6.377327 TTTTGTTGTTTCTTTGGTGCAAAA 57.623 29.167 0.00 0.00 32.75 2.44
142 143 5.604010 TTGTTGTTTCTTTGGTGCAAAAG 57.396 34.783 4.75 4.75 38.31 2.27
143 144 4.887748 TGTTGTTTCTTTGGTGCAAAAGA 58.112 34.783 9.09 9.09 42.89 2.52
144 145 5.486526 TGTTGTTTCTTTGGTGCAAAAGAT 58.513 33.333 13.05 0.00 43.75 2.40
145 146 5.580297 TGTTGTTTCTTTGGTGCAAAAGATC 59.420 36.000 13.05 10.37 43.75 2.75
146 147 5.596836 TGTTTCTTTGGTGCAAAAGATCT 57.403 34.783 13.05 0.00 43.75 2.75
147 148 6.707440 TGTTTCTTTGGTGCAAAAGATCTA 57.293 33.333 13.05 0.00 43.75 1.98
148 149 6.738114 TGTTTCTTTGGTGCAAAAGATCTAG 58.262 36.000 13.05 0.00 43.75 2.43
149 150 6.321181 TGTTTCTTTGGTGCAAAAGATCTAGT 59.679 34.615 13.05 0.00 43.75 2.57
150 151 5.947228 TCTTTGGTGCAAAAGATCTAGTG 57.053 39.130 9.09 0.00 40.41 2.74
151 152 5.376625 TCTTTGGTGCAAAAGATCTAGTGT 58.623 37.500 9.09 0.00 40.41 3.55
152 153 5.827797 TCTTTGGTGCAAAAGATCTAGTGTT 59.172 36.000 9.09 0.00 40.41 3.32
153 154 5.689383 TTGGTGCAAAAGATCTAGTGTTC 57.311 39.130 0.00 0.00 0.00 3.18
154 155 4.072131 TGGTGCAAAAGATCTAGTGTTCC 58.928 43.478 0.00 5.21 0.00 3.62
155 156 3.440522 GGTGCAAAAGATCTAGTGTTCCC 59.559 47.826 0.00 0.00 0.00 3.97
156 157 4.327680 GTGCAAAAGATCTAGTGTTCCCT 58.672 43.478 0.00 0.00 0.00 4.20
157 158 4.154918 GTGCAAAAGATCTAGTGTTCCCTG 59.845 45.833 0.00 0.00 0.00 4.45
158 159 4.202461 TGCAAAAGATCTAGTGTTCCCTGT 60.202 41.667 0.00 0.00 0.00 4.00
159 160 4.762251 GCAAAAGATCTAGTGTTCCCTGTT 59.238 41.667 0.00 0.00 0.00 3.16
160 161 5.335191 GCAAAAGATCTAGTGTTCCCTGTTG 60.335 44.000 0.00 0.00 0.00 3.33
161 162 4.559862 AAGATCTAGTGTTCCCTGTTGG 57.440 45.455 0.00 0.00 0.00 3.77
171 172 2.598394 CCTGTTGGGCTGGTGGTG 60.598 66.667 0.00 0.00 0.00 4.17
172 173 2.598394 CTGTTGGGCTGGTGGTGG 60.598 66.667 0.00 0.00 0.00 4.61
173 174 3.425014 TGTTGGGCTGGTGGTGGT 61.425 61.111 0.00 0.00 0.00 4.16
174 175 2.123468 GTTGGGCTGGTGGTGGTT 60.123 61.111 0.00 0.00 0.00 3.67
175 176 1.760480 GTTGGGCTGGTGGTGGTTT 60.760 57.895 0.00 0.00 0.00 3.27
176 177 1.456705 TTGGGCTGGTGGTGGTTTC 60.457 57.895 0.00 0.00 0.00 2.78
177 178 2.600470 GGGCTGGTGGTGGTTTCC 60.600 66.667 0.00 0.00 0.00 3.13
178 179 2.600470 GGCTGGTGGTGGTTTCCC 60.600 66.667 0.00 0.00 0.00 3.97
179 180 2.520968 GCTGGTGGTGGTTTCCCT 59.479 61.111 0.00 0.00 0.00 4.20
180 181 1.765074 GCTGGTGGTGGTTTCCCTA 59.235 57.895 0.00 0.00 0.00 3.53
181 182 0.111639 GCTGGTGGTGGTTTCCCTAA 59.888 55.000 0.00 0.00 0.00 2.69
182 183 1.886655 GCTGGTGGTGGTTTCCCTAAG 60.887 57.143 0.00 0.00 0.00 2.18
183 184 0.111639 TGGTGGTGGTTTCCCTAAGC 59.888 55.000 0.00 0.00 34.80 3.09
184 185 0.958876 GGTGGTGGTTTCCCTAAGCG 60.959 60.000 0.00 0.00 37.04 4.68
185 186 0.958876 GTGGTGGTTTCCCTAAGCGG 60.959 60.000 0.00 0.00 37.04 5.52
186 187 2.044555 GGTGGTTTCCCTAAGCGGC 61.045 63.158 0.00 0.00 37.04 6.53
187 188 2.046700 TGGTTTCCCTAAGCGGCG 60.047 61.111 0.51 0.51 37.04 6.46
188 189 3.506096 GGTTTCCCTAAGCGGCGC 61.506 66.667 26.86 26.86 0.00 6.53
189 190 3.506096 GTTTCCCTAAGCGGCGCC 61.506 66.667 30.40 19.07 0.00 6.53
195 196 4.891727 CTAAGCGGCGCCGTCCAT 62.892 66.667 45.02 30.61 42.09 3.41
196 197 4.460683 TAAGCGGCGCCGTCCATT 62.461 61.111 45.02 33.85 42.09 3.16
197 198 3.961838 TAAGCGGCGCCGTCCATTT 62.962 57.895 45.02 31.21 42.09 2.32
201 202 3.825611 GGCGCCGTCCATTTGCAT 61.826 61.111 12.58 0.00 0.00 3.96
202 203 2.580326 GCGCCGTCCATTTGCATG 60.580 61.111 0.00 0.00 0.00 4.06
211 212 1.559368 CCATTTGCATGGGAAGGTGA 58.441 50.000 0.00 0.00 45.99 4.02
212 213 2.112998 CCATTTGCATGGGAAGGTGAT 58.887 47.619 0.00 0.00 45.99 3.06
213 214 2.159014 CCATTTGCATGGGAAGGTGATG 60.159 50.000 0.00 0.00 45.99 3.07
214 215 1.559368 TTTGCATGGGAAGGTGATGG 58.441 50.000 0.00 0.00 0.00 3.51
215 216 0.409092 TTGCATGGGAAGGTGATGGT 59.591 50.000 0.00 0.00 0.00 3.55
216 217 0.034186 TGCATGGGAAGGTGATGGTC 60.034 55.000 0.00 0.00 0.00 4.02
217 218 0.753111 GCATGGGAAGGTGATGGTCC 60.753 60.000 0.00 0.00 0.00 4.46
218 219 0.625316 CATGGGAAGGTGATGGTCCA 59.375 55.000 0.00 0.00 32.70 4.02
219 220 1.005805 CATGGGAAGGTGATGGTCCAA 59.994 52.381 0.00 0.00 32.70 3.53
220 221 0.698238 TGGGAAGGTGATGGTCCAAG 59.302 55.000 0.00 0.00 32.70 3.61
221 222 0.991920 GGGAAGGTGATGGTCCAAGA 59.008 55.000 0.00 0.00 32.70 3.02
222 223 1.354368 GGGAAGGTGATGGTCCAAGAA 59.646 52.381 0.00 0.00 32.70 2.52
223 224 2.437413 GGAAGGTGATGGTCCAAGAAC 58.563 52.381 0.00 0.00 0.00 3.01
224 225 2.040412 GGAAGGTGATGGTCCAAGAACT 59.960 50.000 0.00 0.00 0.00 3.01
225 226 2.867109 AGGTGATGGTCCAAGAACTG 57.133 50.000 0.00 0.00 0.00 3.16
227 228 1.614317 GGTGATGGTCCAAGAACTGGG 60.614 57.143 0.00 0.00 46.44 4.45
228 229 1.351017 GTGATGGTCCAAGAACTGGGA 59.649 52.381 0.00 0.00 46.44 4.37
229 230 2.025887 GTGATGGTCCAAGAACTGGGAT 60.026 50.000 0.00 0.00 46.44 3.85
230 231 2.025981 TGATGGTCCAAGAACTGGGATG 60.026 50.000 0.00 0.00 46.44 3.51
231 232 0.698238 TGGTCCAAGAACTGGGATGG 59.302 55.000 0.96 0.00 46.44 3.51
232 233 0.698818 GGTCCAAGAACTGGGATGGT 59.301 55.000 0.96 0.00 46.44 3.55
233 234 1.614317 GGTCCAAGAACTGGGATGGTG 60.614 57.143 0.96 0.00 46.44 4.17
234 235 0.698238 TCCAAGAACTGGGATGGTGG 59.302 55.000 0.00 0.00 46.44 4.61
235 236 0.405585 CCAAGAACTGGGATGGTGGT 59.594 55.000 0.00 0.00 42.17 4.16
236 237 1.614317 CCAAGAACTGGGATGGTGGTC 60.614 57.143 0.00 0.00 42.17 4.02
237 238 1.352352 CAAGAACTGGGATGGTGGTCT 59.648 52.381 0.00 0.00 0.00 3.85
238 239 0.987294 AGAACTGGGATGGTGGTCTG 59.013 55.000 0.00 0.00 0.00 3.51
239 240 0.693049 GAACTGGGATGGTGGTCTGT 59.307 55.000 0.00 0.00 0.00 3.41
240 241 1.073923 GAACTGGGATGGTGGTCTGTT 59.926 52.381 0.00 0.00 0.00 3.16
241 242 2.038863 ACTGGGATGGTGGTCTGTTA 57.961 50.000 0.00 0.00 0.00 2.41
242 243 2.562296 ACTGGGATGGTGGTCTGTTAT 58.438 47.619 0.00 0.00 0.00 1.89
243 244 2.239654 ACTGGGATGGTGGTCTGTTATG 59.760 50.000 0.00 0.00 0.00 1.90
244 245 1.563879 TGGGATGGTGGTCTGTTATGG 59.436 52.381 0.00 0.00 0.00 2.74
245 246 1.843851 GGGATGGTGGTCTGTTATGGA 59.156 52.381 0.00 0.00 0.00 3.41
246 247 2.443255 GGGATGGTGGTCTGTTATGGAT 59.557 50.000 0.00 0.00 0.00 3.41
247 248 3.480470 GGATGGTGGTCTGTTATGGATG 58.520 50.000 0.00 0.00 0.00 3.51
248 249 3.136443 GGATGGTGGTCTGTTATGGATGA 59.864 47.826 0.00 0.00 0.00 2.92
249 250 3.627395 TGGTGGTCTGTTATGGATGAC 57.373 47.619 0.00 0.00 0.00 3.06
250 251 2.093711 TGGTGGTCTGTTATGGATGACG 60.094 50.000 0.00 0.00 0.00 4.35
251 252 2.550978 GTGGTCTGTTATGGATGACGG 58.449 52.381 0.00 0.00 0.00 4.79
252 253 2.093658 GTGGTCTGTTATGGATGACGGT 60.094 50.000 0.00 0.00 0.00 4.83
253 254 2.569853 TGGTCTGTTATGGATGACGGTT 59.430 45.455 0.00 0.00 0.00 4.44
254 255 3.195661 GGTCTGTTATGGATGACGGTTC 58.804 50.000 0.00 0.00 0.00 3.62
255 256 3.195661 GTCTGTTATGGATGACGGTTCC 58.804 50.000 0.00 0.00 0.00 3.62
256 257 3.104512 TCTGTTATGGATGACGGTTCCT 58.895 45.455 0.90 0.00 34.17 3.36
257 258 3.118775 TCTGTTATGGATGACGGTTCCTG 60.119 47.826 0.90 0.00 34.17 3.86
258 259 2.569853 TGTTATGGATGACGGTTCCTGT 59.430 45.455 0.90 0.00 34.17 4.00
259 260 2.936498 GTTATGGATGACGGTTCCTGTG 59.064 50.000 0.90 0.00 34.17 3.66
260 261 0.984230 ATGGATGACGGTTCCTGTGT 59.016 50.000 0.90 0.00 34.17 3.72
261 262 0.762418 TGGATGACGGTTCCTGTGTT 59.238 50.000 0.90 0.00 34.17 3.32
262 263 1.156736 GGATGACGGTTCCTGTGTTG 58.843 55.000 0.00 0.00 0.00 3.33
263 264 1.542547 GGATGACGGTTCCTGTGTTGT 60.543 52.381 0.00 0.00 0.00 3.32
264 265 1.531149 GATGACGGTTCCTGTGTTGTG 59.469 52.381 0.00 0.00 0.00 3.33
265 266 1.092921 TGACGGTTCCTGTGTTGTGC 61.093 55.000 0.00 0.00 0.00 4.57
266 267 0.814010 GACGGTTCCTGTGTTGTGCT 60.814 55.000 0.00 0.00 0.00 4.40
267 268 0.393808 ACGGTTCCTGTGTTGTGCTT 60.394 50.000 0.00 0.00 0.00 3.91
268 269 0.307760 CGGTTCCTGTGTTGTGCTTC 59.692 55.000 0.00 0.00 0.00 3.86
269 270 0.307760 GGTTCCTGTGTTGTGCTTCG 59.692 55.000 0.00 0.00 0.00 3.79
270 271 1.295792 GTTCCTGTGTTGTGCTTCGA 58.704 50.000 0.00 0.00 0.00 3.71
271 272 1.003866 GTTCCTGTGTTGTGCTTCGAC 60.004 52.381 0.00 0.00 0.00 4.20
272 273 0.531974 TCCTGTGTTGTGCTTCGACC 60.532 55.000 0.00 0.00 0.00 4.79
273 274 0.813610 CCTGTGTTGTGCTTCGACCA 60.814 55.000 0.00 0.00 0.00 4.02
274 275 0.304705 CTGTGTTGTGCTTCGACCAC 59.695 55.000 8.14 8.14 0.00 4.16
275 276 1.275657 GTGTTGTGCTTCGACCACG 59.724 57.895 9.94 0.00 36.01 4.94
276 277 1.153529 TGTTGTGCTTCGACCACGT 60.154 52.632 9.94 0.00 40.69 4.49
277 278 1.149361 TGTTGTGCTTCGACCACGTC 61.149 55.000 9.94 6.74 40.69 4.34
289 290 3.102985 CACGTCGGTGGCAAACAA 58.897 55.556 0.00 0.00 40.58 2.83
290 291 1.298041 CACGTCGGTGGCAAACAAC 60.298 57.895 0.00 0.00 40.58 3.32
296 297 2.966324 GGTGGCAAACAACGGTTTC 58.034 52.632 0.00 0.00 45.18 2.78
297 298 0.868177 GGTGGCAAACAACGGTTTCG 60.868 55.000 0.00 0.00 45.18 3.46
298 299 0.868177 GTGGCAAACAACGGTTTCGG 60.868 55.000 0.00 0.00 45.18 4.30
299 300 1.299544 GGCAAACAACGGTTTCGGG 60.300 57.895 0.00 0.00 45.18 5.14
300 301 1.434287 GCAAACAACGGTTTCGGGT 59.566 52.632 0.00 0.00 45.18 5.28
301 302 0.593008 GCAAACAACGGTTTCGGGTC 60.593 55.000 0.00 0.00 45.18 4.46
302 303 0.733729 CAAACAACGGTTTCGGGTCA 59.266 50.000 0.00 0.00 45.18 4.02
303 304 0.734309 AAACAACGGTTTCGGGTCAC 59.266 50.000 0.00 0.00 43.60 3.67
304 305 1.430707 AACAACGGTTTCGGGTCACG 61.431 55.000 0.00 0.00 46.11 4.35
333 334 0.814010 GGAATGTCCCCCGATCAACG 60.814 60.000 0.00 0.00 42.18 4.10
334 335 1.436983 GAATGTCCCCCGATCAACGC 61.437 60.000 0.00 0.00 41.07 4.84
342 343 2.749865 CCGATCAACGCGCCACAAT 61.750 57.895 5.73 0.00 41.07 2.71
356 357 1.741770 ACAATGACTTCGGCTCCGC 60.742 57.895 2.96 0.00 39.59 5.54
385 386 2.665777 CGGAGCTATGTTGTGACCG 58.334 57.895 0.00 0.00 0.00 4.79
401 402 3.282157 CGAATGGGCCATGGCTCG 61.282 66.667 34.70 29.73 46.35 5.03
418 419 3.588955 GCTCGCCCAGATTTTCAATTTT 58.411 40.909 0.00 0.00 0.00 1.82
450 451 7.642094 ATTATAGAAATGTACCTAGGCCCAA 57.358 36.000 9.30 0.00 0.00 4.12
459 460 0.557729 CCTAGGCCCAACCCATGAAT 59.442 55.000 0.00 0.00 40.58 2.57
460 461 1.780309 CCTAGGCCCAACCCATGAATA 59.220 52.381 0.00 0.00 40.58 1.75
461 462 2.489073 CCTAGGCCCAACCCATGAATAC 60.489 54.545 0.00 0.00 40.58 1.89
462 463 1.006813 AGGCCCAACCCATGAATACA 58.993 50.000 0.00 0.00 40.58 2.29
463 464 1.111277 GGCCCAACCCATGAATACAC 58.889 55.000 0.00 0.00 0.00 2.90
464 465 1.618345 GGCCCAACCCATGAATACACA 60.618 52.381 0.00 0.00 0.00 3.72
466 467 2.094234 GCCCAACCCATGAATACACAAC 60.094 50.000 0.00 0.00 0.00 3.32
467 468 3.161067 CCCAACCCATGAATACACAACA 58.839 45.455 0.00 0.00 0.00 3.33
478 480 5.126779 TGAATACACAACACTACAAGGCAA 58.873 37.500 0.00 0.00 0.00 4.52
506 508 4.622701 AGATTTAGCGTCAAATTCAGCC 57.377 40.909 0.00 0.00 0.00 4.85
508 510 1.083489 TTAGCGTCAAATTCAGCCCG 58.917 50.000 0.00 0.00 0.00 6.13
511 513 2.040544 CGTCAAATTCAGCCCGGCT 61.041 57.895 5.94 5.94 40.77 5.52
512 514 1.586154 CGTCAAATTCAGCCCGGCTT 61.586 55.000 9.99 0.00 36.40 4.35
536 538 4.646572 CCCAGTTTTCTGTTTCTAGCTCT 58.353 43.478 0.00 0.00 45.68 4.09
537 539 5.794894 CCCAGTTTTCTGTTTCTAGCTCTA 58.205 41.667 0.00 0.00 45.68 2.43
1356 1409 4.595538 TGGAGTTCACGCCGCGTT 62.596 61.111 17.45 0.56 38.32 4.84
1369 1422 1.599419 GCCGCGTTGTTGTGAAAGATT 60.599 47.619 4.92 0.00 0.00 2.40
1414 1470 3.548668 GCACACGTTTAACAAGGGAAAAC 59.451 43.478 0.00 0.00 0.00 2.43
1459 1515 5.067413 GGACGGATTTGTGTCTAGTAGATGA 59.933 44.000 2.51 0.00 35.45 2.92
1487 1543 0.813610 TGAATTAGGCCCATCGCGTG 60.814 55.000 5.77 3.64 38.94 5.34
1560 1616 2.758648 TGTGGCCAGAGCTAACAGA 58.241 52.632 5.11 0.00 39.73 3.41
1641 1697 3.538028 CTGCTGTGTGCTGTGCTGC 62.538 63.158 0.00 0.00 43.37 5.25
1690 1746 4.959210 TCTCTCCAGATCCTTCTGTTTAGG 59.041 45.833 2.61 0.00 46.71 2.69
1774 1831 1.066787 TGCACGGAATGTCGATTGGTA 60.067 47.619 0.00 0.00 0.00 3.25
1810 1867 1.456331 GGGTAGGCGGGTACTAGCA 60.456 63.158 13.38 0.00 39.90 3.49
1848 1909 8.832735 TGAACTTTAGGGTTCATAGATTTAGGT 58.167 33.333 6.03 0.00 46.91 3.08
1876 1937 2.280628 GGCTTTACGATGAGTTGAGGG 58.719 52.381 0.00 0.00 0.00 4.30
1965 2026 5.186198 ACTACTGCAGTTGGGATGTAATTC 58.814 41.667 27.06 0.00 31.59 2.17
2028 2089 8.301252 TCTGATACCACTGCTACAAACTATTA 57.699 34.615 0.00 0.00 0.00 0.98
2029 2090 8.924303 TCTGATACCACTGCTACAAACTATTAT 58.076 33.333 0.00 0.00 0.00 1.28
2030 2091 9.547753 CTGATACCACTGCTACAAACTATTATT 57.452 33.333 0.00 0.00 0.00 1.40
2077 2138 3.979911 ACCACATAAAGGCCAATCATGA 58.020 40.909 5.01 0.00 0.00 3.07
2081 2142 6.783977 ACCACATAAAGGCCAATCATGATATT 59.216 34.615 9.04 0.00 0.00 1.28
2111 2172 2.815503 TGTCGTCTGTCATTAGAACCGA 59.184 45.455 0.00 0.00 0.00 4.69
2149 2210 9.092876 TGTGTTTCTTTCAATAAATTTGGTCAC 57.907 29.630 0.00 0.00 0.00 3.67
2185 2247 6.494893 TTTTAACATTGACTCCTTCGGATG 57.505 37.500 0.00 0.00 0.00 3.51
2251 2313 1.001597 CCGCTAGGTAGGATGTTCGTC 60.002 57.143 0.00 0.00 0.00 4.20
2876 2939 1.581934 TGGTCAGTGCTCAAACTTCG 58.418 50.000 0.00 0.00 0.00 3.79
2900 2963 4.183865 TGCTGCACTTATGTCTGTATGTC 58.816 43.478 0.00 0.00 0.00 3.06
2950 3013 1.523758 ATCTTTCACGGTGCACCTTC 58.476 50.000 32.28 7.95 0.00 3.46
2991 3054 3.371102 TCAGACGGACAACTTCAGAAG 57.629 47.619 8.77 8.77 0.00 2.85
3291 3361 9.868277 CTACTTCCTCTTCCATTATGTATCATC 57.132 37.037 0.00 0.00 0.00 2.92
3294 3364 8.496534 TTCCTCTTCCATTATGTATCATCTGA 57.503 34.615 0.00 0.00 0.00 3.27
3295 3365 7.901029 TCCTCTTCCATTATGTATCATCTGAC 58.099 38.462 0.00 0.00 0.00 3.51
3296 3366 7.732140 TCCTCTTCCATTATGTATCATCTGACT 59.268 37.037 0.00 0.00 0.00 3.41
3297 3367 8.373981 CCTCTTCCATTATGTATCATCTGACTT 58.626 37.037 0.00 0.00 0.00 3.01
3310 3380 6.174720 TCATCTGACTTACTTGGTTTCAGT 57.825 37.500 0.00 0.00 36.03 3.41
3324 3394 8.960591 ACTTGGTTTCAGTCTTCATATTATTGG 58.039 33.333 0.00 0.00 0.00 3.16
3346 3416 7.846644 TGGAATTTTATTGGAATGTCATTGC 57.153 32.000 9.96 9.96 0.00 3.56
3372 3442 4.957296 ACGAAGTAGTGAAATGTTGTCCT 58.043 39.130 0.00 0.00 41.94 3.85
3428 3498 2.076863 GCAAAGATACGAGTGCTGGTT 58.923 47.619 0.00 0.00 34.13 3.67
3470 3540 1.001974 CCCTGTTCCTCATGTCGTTGA 59.998 52.381 0.00 0.00 0.00 3.18
3527 3604 3.492102 TTAGAAGAGCTTTGCTGTGGT 57.508 42.857 0.00 0.00 39.88 4.16
3553 3630 3.195698 GAATCGGTCGCTGGTGGC 61.196 66.667 0.00 0.00 37.64 5.01
3658 3735 2.981859 TTAGGAAGGCATTCGACTCC 57.018 50.000 4.84 0.00 36.19 3.85
3698 3775 3.552875 CTGGAGATGTTGAGCCATCATT 58.447 45.455 4.20 0.00 43.00 2.57
3769 3846 5.010213 GGCATCCTCGAGAGTCTTACTAAAT 59.990 44.000 15.71 0.00 0.00 1.40
3779 3856 7.921214 CGAGAGTCTTACTAAATGGAATTGCTA 59.079 37.037 0.00 0.00 36.10 3.49
3834 3911 1.674651 GTGACCCGCTTTCCCCTTC 60.675 63.158 0.00 0.00 0.00 3.46
3848 3925 0.826715 CCCTTCGCTCTTCATCCTCA 59.173 55.000 0.00 0.00 0.00 3.86
3954 4032 1.302033 CCTCCCTGTATGCCGATGC 60.302 63.158 0.00 0.00 38.26 3.91
3966 4044 1.136147 CCGATGCTGCTGCTGTTTC 59.864 57.895 17.00 7.54 40.48 2.78
3975 4053 1.458639 GCTGCTGTTTCTTGTGCCCT 61.459 55.000 0.00 0.00 0.00 5.19
4032 4110 1.707427 AGCTTCCTTTGGTGAGTCCAT 59.293 47.619 0.00 0.00 46.60 3.41
4051 4129 1.136828 TGGGCTTGTCCACTAACTGT 58.863 50.000 0.00 0.00 36.21 3.55
4053 4131 1.202770 GGGCTTGTCCACTAACTGTGT 60.203 52.381 0.00 0.00 44.81 3.72
4069 4147 4.450976 ACTGTGTCAAGAGTATTGTTGCA 58.549 39.130 0.00 0.00 0.00 4.08
4123 4201 0.991920 TTCTTCAATCCTTCCCGGCT 59.008 50.000 0.00 0.00 0.00 5.52
4170 4248 1.999071 CTTGGTCTCCCTCTCGCGAG 61.999 65.000 30.03 30.03 37.01 5.03
4176 4254 1.733402 CTCCCTCTCGCGAGCAAGAT 61.733 60.000 30.97 0.00 35.90 2.40
4330 4408 0.324368 ACATCACTCCGCTGGACCTA 60.324 55.000 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.110178 CGGGAGAAACGCACGTCC 61.110 66.667 0.00 0.00 0.00 4.79
1 2 2.355481 ACGGGAGAAACGCACGTC 60.355 61.111 0.00 0.00 31.39 4.34
3 4 1.683790 GATGACGGGAGAAACGCACG 61.684 60.000 0.00 0.00 34.00 5.34
5 6 1.445410 CGATGACGGGAGAAACGCA 60.445 57.895 0.00 0.00 35.72 5.24
6 7 1.012486 AACGATGACGGGAGAAACGC 61.012 55.000 0.00 0.00 44.46 4.84
7 8 1.126113 CAAACGATGACGGGAGAAACG 59.874 52.381 0.00 0.00 44.46 3.60
8 9 2.409975 TCAAACGATGACGGGAGAAAC 58.590 47.619 0.00 0.00 44.46 2.78
9 10 2.823924 TCAAACGATGACGGGAGAAA 57.176 45.000 0.00 0.00 44.46 2.52
18 19 1.445410 CGCCGAGGTCAAACGATGA 60.445 57.895 0.00 0.00 35.05 2.92
19 20 2.452813 CCGCCGAGGTCAAACGATG 61.453 63.158 0.00 0.00 34.51 3.84
20 21 2.125673 CCGCCGAGGTCAAACGAT 60.126 61.111 0.00 0.00 34.51 3.73
29 30 7.893118 GGAAAATTTATTCCAACCGCCGAGG 62.893 48.000 4.33 0.00 46.70 4.63
30 31 3.775661 AAATTTATTCCAACCGCCGAG 57.224 42.857 0.00 0.00 0.00 4.63
31 32 3.119424 GGAAAATTTATTCCAACCGCCGA 60.119 43.478 4.33 0.00 46.70 5.54
32 33 3.183754 GGAAAATTTATTCCAACCGCCG 58.816 45.455 4.33 0.00 46.70 6.46
40 41 7.347252 AGACAGGACTAGGGAAAATTTATTCC 58.653 38.462 0.84 0.84 46.74 3.01
41 42 7.499563 GGAGACAGGACTAGGGAAAATTTATTC 59.500 40.741 0.00 0.00 0.00 1.75
42 43 7.036863 TGGAGACAGGACTAGGGAAAATTTATT 60.037 37.037 0.00 0.00 35.01 1.40
43 44 6.447084 TGGAGACAGGACTAGGGAAAATTTAT 59.553 38.462 0.00 0.00 35.01 1.40
44 45 5.788533 TGGAGACAGGACTAGGGAAAATTTA 59.211 40.000 0.00 0.00 35.01 1.40
45 46 4.601857 TGGAGACAGGACTAGGGAAAATTT 59.398 41.667 0.00 0.00 35.01 1.82
46 47 4.175962 TGGAGACAGGACTAGGGAAAATT 58.824 43.478 0.00 0.00 35.01 1.82
47 48 3.803340 TGGAGACAGGACTAGGGAAAAT 58.197 45.455 0.00 0.00 35.01 1.82
48 49 3.269592 TGGAGACAGGACTAGGGAAAA 57.730 47.619 0.00 0.00 35.01 2.29
59 60 3.607696 CGATGCCGAGATGGAGACAGG 62.608 61.905 0.00 0.00 40.82 4.00
60 61 0.318529 CGATGCCGAGATGGAGACAG 60.319 60.000 0.00 0.00 40.82 3.51
61 62 1.735973 CGATGCCGAGATGGAGACA 59.264 57.895 0.00 0.00 42.00 3.41
62 63 1.663074 GCGATGCCGAGATGGAGAC 60.663 63.158 0.00 0.00 42.00 3.36
63 64 2.730733 GCGATGCCGAGATGGAGA 59.269 61.111 0.00 0.00 42.00 3.71
64 65 2.356793 GGCGATGCCGAGATGGAG 60.357 66.667 0.00 0.00 39.62 3.86
86 87 3.486252 GAATCCCTCGACCTCGCCG 62.486 68.421 0.00 0.00 39.60 6.46
87 88 1.749334 ATGAATCCCTCGACCTCGCC 61.749 60.000 0.00 0.00 39.60 5.54
88 89 0.598680 CATGAATCCCTCGACCTCGC 60.599 60.000 0.00 0.00 39.60 5.03
89 90 0.032678 CCATGAATCCCTCGACCTCG 59.967 60.000 0.00 0.00 41.45 4.63
90 91 0.394565 CCCATGAATCCCTCGACCTC 59.605 60.000 0.00 0.00 0.00 3.85
91 92 0.031111 TCCCATGAATCCCTCGACCT 60.031 55.000 0.00 0.00 0.00 3.85
92 93 0.394565 CTCCCATGAATCCCTCGACC 59.605 60.000 0.00 0.00 0.00 4.79
93 94 1.414158 TCTCCCATGAATCCCTCGAC 58.586 55.000 0.00 0.00 0.00 4.20
94 95 2.369860 CAATCTCCCATGAATCCCTCGA 59.630 50.000 0.00 0.00 0.00 4.04
95 96 2.369860 TCAATCTCCCATGAATCCCTCG 59.630 50.000 0.00 0.00 0.00 4.63
96 97 4.443978 TTCAATCTCCCATGAATCCCTC 57.556 45.455 0.00 0.00 30.94 4.30
97 98 5.414133 AATTCAATCTCCCATGAATCCCT 57.586 39.130 0.00 0.00 43.54 4.20
98 99 6.126968 ACAAAATTCAATCTCCCATGAATCCC 60.127 38.462 0.00 0.00 43.54 3.85
99 100 6.881570 ACAAAATTCAATCTCCCATGAATCC 58.118 36.000 0.00 0.00 43.54 3.01
100 101 7.820872 ACAACAAAATTCAATCTCCCATGAATC 59.179 33.333 0.00 0.00 43.54 2.52
101 102 7.682628 ACAACAAAATTCAATCTCCCATGAAT 58.317 30.769 0.00 0.00 45.61 2.57
102 103 7.065120 ACAACAAAATTCAATCTCCCATGAA 57.935 32.000 0.00 0.00 39.66 2.57
103 104 6.669125 ACAACAAAATTCAATCTCCCATGA 57.331 33.333 0.00 0.00 0.00 3.07
104 105 7.658575 AGAAACAACAAAATTCAATCTCCCATG 59.341 33.333 0.00 0.00 0.00 3.66
105 106 7.738847 AGAAACAACAAAATTCAATCTCCCAT 58.261 30.769 0.00 0.00 0.00 4.00
106 107 7.123355 AGAAACAACAAAATTCAATCTCCCA 57.877 32.000 0.00 0.00 0.00 4.37
107 108 8.337532 CAAAGAAACAACAAAATTCAATCTCCC 58.662 33.333 0.00 0.00 0.00 4.30
108 109 8.337532 CCAAAGAAACAACAAAATTCAATCTCC 58.662 33.333 0.00 0.00 0.00 3.71
109 110 8.882736 ACCAAAGAAACAACAAAATTCAATCTC 58.117 29.630 0.00 0.00 0.00 2.75
110 111 8.667463 CACCAAAGAAACAACAAAATTCAATCT 58.333 29.630 0.00 0.00 0.00 2.40
111 112 7.429051 GCACCAAAGAAACAACAAAATTCAATC 59.571 33.333 0.00 0.00 0.00 2.67
112 113 7.094463 TGCACCAAAGAAACAACAAAATTCAAT 60.094 29.630 0.00 0.00 0.00 2.57
113 114 6.205464 TGCACCAAAGAAACAACAAAATTCAA 59.795 30.769 0.00 0.00 0.00 2.69
114 115 5.702670 TGCACCAAAGAAACAACAAAATTCA 59.297 32.000 0.00 0.00 0.00 2.57
115 116 6.175712 TGCACCAAAGAAACAACAAAATTC 57.824 33.333 0.00 0.00 0.00 2.17
116 117 6.566197 TTGCACCAAAGAAACAACAAAATT 57.434 29.167 0.00 0.00 0.00 1.82
117 118 6.566197 TTTGCACCAAAGAAACAACAAAAT 57.434 29.167 0.00 0.00 0.00 1.82
118 119 6.260936 TCTTTTGCACCAAAGAAACAACAAAA 59.739 30.769 10.47 0.00 34.72 2.44
119 120 5.760253 TCTTTTGCACCAAAGAAACAACAAA 59.240 32.000 10.47 0.00 34.72 2.83
120 121 5.300752 TCTTTTGCACCAAAGAAACAACAA 58.699 33.333 10.47 0.00 34.72 2.83
121 122 4.887748 TCTTTTGCACCAAAGAAACAACA 58.112 34.783 10.47 0.00 34.72 3.33
122 123 5.812127 AGATCTTTTGCACCAAAGAAACAAC 59.188 36.000 15.60 7.19 34.72 3.32
123 124 5.976458 AGATCTTTTGCACCAAAGAAACAA 58.024 33.333 15.60 0.00 34.72 2.83
124 125 5.596836 AGATCTTTTGCACCAAAGAAACA 57.403 34.783 15.60 0.00 34.72 2.83
125 126 6.638468 CACTAGATCTTTTGCACCAAAGAAAC 59.362 38.462 15.60 12.77 34.72 2.78
126 127 6.321181 ACACTAGATCTTTTGCACCAAAGAAA 59.679 34.615 15.60 5.96 34.72 2.52
127 128 5.827797 ACACTAGATCTTTTGCACCAAAGAA 59.172 36.000 15.60 1.76 34.72 2.52
128 129 5.376625 ACACTAGATCTTTTGCACCAAAGA 58.623 37.500 14.33 14.33 34.72 2.52
129 130 5.695851 ACACTAGATCTTTTGCACCAAAG 57.304 39.130 0.00 4.75 34.72 2.77
130 131 5.009610 GGAACACTAGATCTTTTGCACCAAA 59.990 40.000 0.00 0.00 0.00 3.28
131 132 4.518970 GGAACACTAGATCTTTTGCACCAA 59.481 41.667 0.00 0.00 0.00 3.67
132 133 4.072131 GGAACACTAGATCTTTTGCACCA 58.928 43.478 0.00 0.00 0.00 4.17
133 134 3.440522 GGGAACACTAGATCTTTTGCACC 59.559 47.826 0.00 5.79 0.00 5.01
134 135 4.154918 CAGGGAACACTAGATCTTTTGCAC 59.845 45.833 0.00 0.00 0.00 4.57
135 136 4.202461 ACAGGGAACACTAGATCTTTTGCA 60.202 41.667 0.00 0.00 0.00 4.08
136 137 4.327680 ACAGGGAACACTAGATCTTTTGC 58.672 43.478 0.00 0.00 0.00 3.68
137 138 5.182001 CCAACAGGGAACACTAGATCTTTTG 59.818 44.000 0.00 0.68 40.01 2.44
138 139 5.316987 CCAACAGGGAACACTAGATCTTTT 58.683 41.667 0.00 0.00 40.01 2.27
139 140 4.263506 CCCAACAGGGAACACTAGATCTTT 60.264 45.833 0.00 0.00 46.20 2.52
140 141 3.264450 CCCAACAGGGAACACTAGATCTT 59.736 47.826 0.00 0.00 46.20 2.40
141 142 2.840651 CCCAACAGGGAACACTAGATCT 59.159 50.000 0.00 0.00 46.20 2.75
142 143 2.681097 GCCCAACAGGGAACACTAGATC 60.681 54.545 4.37 0.00 46.20 2.75
143 144 1.282157 GCCCAACAGGGAACACTAGAT 59.718 52.381 4.37 0.00 46.20 1.98
144 145 0.690762 GCCCAACAGGGAACACTAGA 59.309 55.000 4.37 0.00 46.20 2.43
145 146 0.693049 AGCCCAACAGGGAACACTAG 59.307 55.000 4.37 0.00 46.20 2.57
146 147 0.400213 CAGCCCAACAGGGAACACTA 59.600 55.000 4.37 0.00 46.20 2.74
147 148 1.151450 CAGCCCAACAGGGAACACT 59.849 57.895 4.37 0.00 46.20 3.55
148 149 1.903404 CCAGCCCAACAGGGAACAC 60.903 63.158 4.37 0.00 46.20 3.32
149 150 2.391130 ACCAGCCCAACAGGGAACA 61.391 57.895 4.37 0.00 46.20 3.18
150 151 1.903404 CACCAGCCCAACAGGGAAC 60.903 63.158 4.37 0.00 46.20 3.62
151 152 2.520458 CACCAGCCCAACAGGGAA 59.480 61.111 4.37 0.00 46.20 3.97
152 153 3.579302 CCACCAGCCCAACAGGGA 61.579 66.667 4.37 0.00 46.20 4.20
153 154 3.902112 ACCACCAGCCCAACAGGG 61.902 66.667 0.00 0.00 46.03 4.45
154 155 2.598394 CACCACCAGCCCAACAGG 60.598 66.667 0.00 0.00 39.47 4.00
155 156 2.598394 CCACCACCAGCCCAACAG 60.598 66.667 0.00 0.00 0.00 3.16
156 157 2.522198 AAACCACCACCAGCCCAACA 62.522 55.000 0.00 0.00 0.00 3.33
157 158 1.744320 GAAACCACCACCAGCCCAAC 61.744 60.000 0.00 0.00 0.00 3.77
158 159 1.456705 GAAACCACCACCAGCCCAA 60.457 57.895 0.00 0.00 0.00 4.12
159 160 2.197324 GAAACCACCACCAGCCCA 59.803 61.111 0.00 0.00 0.00 5.36
160 161 2.600470 GGAAACCACCACCAGCCC 60.600 66.667 0.00 0.00 0.00 5.19
172 173 3.506096 GGCGCCGCTTAGGGAAAC 61.506 66.667 12.58 0.00 41.48 2.78
178 179 4.891727 ATGGACGGCGCCGCTTAG 62.892 66.667 46.22 22.85 44.19 2.18
179 180 3.961838 AAATGGACGGCGCCGCTTA 62.962 57.895 46.22 32.02 44.19 3.09
184 185 3.825611 ATGCAAATGGACGGCGCC 61.826 61.111 19.07 19.07 0.00 6.53
185 186 2.580326 CATGCAAATGGACGGCGC 60.580 61.111 6.90 0.00 0.00 6.53
186 187 2.102749 CCATGCAAATGGACGGCG 59.897 61.111 4.80 4.80 44.39 6.46
187 188 1.603236 TTCCCATGCAAATGGACGGC 61.603 55.000 7.97 0.00 44.39 5.68
188 189 0.457035 CTTCCCATGCAAATGGACGG 59.543 55.000 7.97 0.00 44.39 4.79
189 190 0.457035 CCTTCCCATGCAAATGGACG 59.543 55.000 7.97 3.80 44.39 4.79
190 191 1.205417 CACCTTCCCATGCAAATGGAC 59.795 52.381 7.97 0.00 44.39 4.02
191 192 1.076841 TCACCTTCCCATGCAAATGGA 59.923 47.619 7.97 3.03 44.39 3.41
192 193 1.559368 TCACCTTCCCATGCAAATGG 58.441 50.000 0.00 0.00 41.34 3.16
193 194 2.159014 CCATCACCTTCCCATGCAAATG 60.159 50.000 0.00 0.00 0.00 2.32
194 195 2.112998 CCATCACCTTCCCATGCAAAT 58.887 47.619 0.00 0.00 0.00 2.32
195 196 1.203162 ACCATCACCTTCCCATGCAAA 60.203 47.619 0.00 0.00 0.00 3.68
196 197 0.409092 ACCATCACCTTCCCATGCAA 59.591 50.000 0.00 0.00 0.00 4.08
197 198 0.034186 GACCATCACCTTCCCATGCA 60.034 55.000 0.00 0.00 0.00 3.96
198 199 0.753111 GGACCATCACCTTCCCATGC 60.753 60.000 0.00 0.00 0.00 4.06
199 200 0.625316 TGGACCATCACCTTCCCATG 59.375 55.000 0.00 0.00 0.00 3.66
200 201 1.285962 CTTGGACCATCACCTTCCCAT 59.714 52.381 0.00 0.00 0.00 4.00
201 202 0.698238 CTTGGACCATCACCTTCCCA 59.302 55.000 0.00 0.00 0.00 4.37
202 203 0.991920 TCTTGGACCATCACCTTCCC 59.008 55.000 0.00 0.00 0.00 3.97
203 204 2.040412 AGTTCTTGGACCATCACCTTCC 59.960 50.000 0.00 0.00 0.00 3.46
204 205 3.077359 CAGTTCTTGGACCATCACCTTC 58.923 50.000 0.00 0.00 0.00 3.46
205 206 3.146104 CAGTTCTTGGACCATCACCTT 57.854 47.619 0.00 0.00 0.00 3.50
206 207 2.867109 CAGTTCTTGGACCATCACCT 57.133 50.000 0.00 0.00 0.00 4.00
217 218 1.352352 AGACCACCATCCCAGTTCTTG 59.648 52.381 0.00 0.00 0.00 3.02
218 219 1.352352 CAGACCACCATCCCAGTTCTT 59.648 52.381 0.00 0.00 0.00 2.52
219 220 0.987294 CAGACCACCATCCCAGTTCT 59.013 55.000 0.00 0.00 0.00 3.01
220 221 0.693049 ACAGACCACCATCCCAGTTC 59.307 55.000 0.00 0.00 0.00 3.01
221 222 1.149101 AACAGACCACCATCCCAGTT 58.851 50.000 0.00 0.00 0.00 3.16
222 223 2.038863 TAACAGACCACCATCCCAGT 57.961 50.000 0.00 0.00 0.00 4.00
223 224 2.421952 CCATAACAGACCACCATCCCAG 60.422 54.545 0.00 0.00 0.00 4.45
224 225 1.563879 CCATAACAGACCACCATCCCA 59.436 52.381 0.00 0.00 0.00 4.37
225 226 1.843851 TCCATAACAGACCACCATCCC 59.156 52.381 0.00 0.00 0.00 3.85
226 227 3.136443 TCATCCATAACAGACCACCATCC 59.864 47.826 0.00 0.00 0.00 3.51
227 228 4.130118 GTCATCCATAACAGACCACCATC 58.870 47.826 0.00 0.00 0.00 3.51
228 229 3.432186 CGTCATCCATAACAGACCACCAT 60.432 47.826 0.00 0.00 0.00 3.55
229 230 2.093711 CGTCATCCATAACAGACCACCA 60.094 50.000 0.00 0.00 0.00 4.17
230 231 2.550978 CGTCATCCATAACAGACCACC 58.449 52.381 0.00 0.00 0.00 4.61
231 232 2.093658 ACCGTCATCCATAACAGACCAC 60.094 50.000 0.00 0.00 0.00 4.16
232 233 2.184533 ACCGTCATCCATAACAGACCA 58.815 47.619 0.00 0.00 0.00 4.02
233 234 2.981859 ACCGTCATCCATAACAGACC 57.018 50.000 0.00 0.00 0.00 3.85
234 235 3.118738 AGGAACCGTCATCCATAACAGAC 60.119 47.826 0.00 0.00 39.55 3.51
235 236 3.104512 AGGAACCGTCATCCATAACAGA 58.895 45.455 0.00 0.00 39.55 3.41
236 237 3.198068 CAGGAACCGTCATCCATAACAG 58.802 50.000 0.00 0.00 39.55 3.16
237 238 2.569853 ACAGGAACCGTCATCCATAACA 59.430 45.455 0.00 0.00 39.55 2.41
238 239 2.936498 CACAGGAACCGTCATCCATAAC 59.064 50.000 0.00 0.00 39.55 1.89
239 240 2.569853 ACACAGGAACCGTCATCCATAA 59.430 45.455 0.00 0.00 39.55 1.90
240 241 2.184533 ACACAGGAACCGTCATCCATA 58.815 47.619 0.00 0.00 39.55 2.74
241 242 0.984230 ACACAGGAACCGTCATCCAT 59.016 50.000 0.00 0.00 39.55 3.41
242 243 0.762418 AACACAGGAACCGTCATCCA 59.238 50.000 0.00 0.00 39.55 3.41
243 244 1.156736 CAACACAGGAACCGTCATCC 58.843 55.000 0.00 0.00 37.22 3.51
244 245 1.531149 CACAACACAGGAACCGTCATC 59.469 52.381 0.00 0.00 0.00 2.92
245 246 1.593196 CACAACACAGGAACCGTCAT 58.407 50.000 0.00 0.00 0.00 3.06
246 247 1.092921 GCACAACACAGGAACCGTCA 61.093 55.000 0.00 0.00 0.00 4.35
247 248 0.814010 AGCACAACACAGGAACCGTC 60.814 55.000 0.00 0.00 0.00 4.79
248 249 0.393808 AAGCACAACACAGGAACCGT 60.394 50.000 0.00 0.00 0.00 4.83
249 250 0.307760 GAAGCACAACACAGGAACCG 59.692 55.000 0.00 0.00 0.00 4.44
250 251 0.307760 CGAAGCACAACACAGGAACC 59.692 55.000 0.00 0.00 0.00 3.62
251 252 1.003866 GTCGAAGCACAACACAGGAAC 60.004 52.381 0.00 0.00 0.00 3.62
252 253 1.295792 GTCGAAGCACAACACAGGAA 58.704 50.000 0.00 0.00 0.00 3.36
253 254 0.531974 GGTCGAAGCACAACACAGGA 60.532 55.000 0.00 0.00 0.00 3.86
254 255 0.813610 TGGTCGAAGCACAACACAGG 60.814 55.000 0.00 0.00 0.00 4.00
255 256 0.304705 GTGGTCGAAGCACAACACAG 59.695 55.000 10.83 0.00 45.26 3.66
256 257 1.425267 CGTGGTCGAAGCACAACACA 61.425 55.000 14.45 0.00 46.17 3.72
257 258 1.275657 CGTGGTCGAAGCACAACAC 59.724 57.895 14.45 0.00 46.17 3.32
258 259 1.149361 GACGTGGTCGAAGCACAACA 61.149 55.000 14.45 0.00 46.17 3.33
259 260 1.563173 GACGTGGTCGAAGCACAAC 59.437 57.895 14.45 6.49 46.17 3.32
260 261 4.021650 GACGTGGTCGAAGCACAA 57.978 55.556 14.45 0.00 46.17 3.33
272 273 1.298041 GTTGTTTGCCACCGACGTG 60.298 57.895 0.00 0.00 39.91 4.49
273 274 2.815298 CGTTGTTTGCCACCGACGT 61.815 57.895 0.00 0.00 32.26 4.34
274 275 2.052590 CGTTGTTTGCCACCGACG 60.053 61.111 0.00 0.00 0.00 5.12
275 276 1.995646 AACCGTTGTTTGCCACCGAC 61.996 55.000 0.00 0.00 0.00 4.79
276 277 1.313812 AAACCGTTGTTTGCCACCGA 61.314 50.000 0.00 0.00 42.97 4.69
277 278 0.868177 GAAACCGTTGTTTGCCACCG 60.868 55.000 0.00 0.00 44.57 4.94
278 279 0.868177 CGAAACCGTTGTTTGCCACC 60.868 55.000 0.00 0.00 44.57 4.61
279 280 0.868177 CCGAAACCGTTGTTTGCCAC 60.868 55.000 0.00 0.00 44.57 5.01
280 281 1.433879 CCGAAACCGTTGTTTGCCA 59.566 52.632 0.00 0.00 44.57 4.92
281 282 1.299544 CCCGAAACCGTTGTTTGCC 60.300 57.895 0.00 0.00 44.57 4.52
282 283 0.593008 GACCCGAAACCGTTGTTTGC 60.593 55.000 0.00 0.00 44.57 3.68
283 284 0.733729 TGACCCGAAACCGTTGTTTG 59.266 50.000 0.00 0.00 44.57 2.93
285 286 1.430707 CGTGACCCGAAACCGTTGTT 61.431 55.000 0.00 0.00 39.56 2.83
286 287 1.884004 CGTGACCCGAAACCGTTGT 60.884 57.895 0.00 0.00 39.56 3.32
287 288 1.554042 CTCGTGACCCGAAACCGTTG 61.554 60.000 0.00 0.00 46.75 4.10
288 289 1.300388 CTCGTGACCCGAAACCGTT 60.300 57.895 0.00 0.00 46.75 4.44
289 290 2.337532 CTCGTGACCCGAAACCGT 59.662 61.111 0.00 0.00 46.75 4.83
290 291 2.431942 CCTCGTGACCCGAAACCG 60.432 66.667 0.00 0.00 46.75 4.44
291 292 1.080025 CTCCTCGTGACCCGAAACC 60.080 63.158 0.00 0.00 46.75 3.27
292 293 0.666577 CACTCCTCGTGACCCGAAAC 60.667 60.000 0.00 0.00 46.75 2.78
293 294 1.111116 ACACTCCTCGTGACCCGAAA 61.111 55.000 0.00 0.00 46.75 3.46
294 295 1.529948 ACACTCCTCGTGACCCGAA 60.530 57.895 0.00 0.00 46.75 4.30
295 296 2.114625 ACACTCCTCGTGACCCGA 59.885 61.111 0.00 0.00 46.81 5.14
296 297 2.258591 CACACTCCTCGTGACCCG 59.741 66.667 0.00 0.00 46.81 5.28
297 298 2.657237 CCACACTCCTCGTGACCC 59.343 66.667 0.00 0.00 46.81 4.46
298 299 1.469335 TTCCCACACTCCTCGTGACC 61.469 60.000 0.00 0.00 46.81 4.02
299 300 0.608640 ATTCCCACACTCCTCGTGAC 59.391 55.000 0.00 0.00 46.81 3.67
300 301 0.608130 CATTCCCACACTCCTCGTGA 59.392 55.000 0.00 0.00 46.81 4.35
302 303 0.608640 GACATTCCCACACTCCTCGT 59.391 55.000 0.00 0.00 0.00 4.18
303 304 0.108138 GGACATTCCCACACTCCTCG 60.108 60.000 0.00 0.00 0.00 4.63
304 305 3.863407 GGACATTCCCACACTCCTC 57.137 57.895 0.00 0.00 0.00 3.71
314 315 0.814010 CGTTGATCGGGGGACATTCC 60.814 60.000 0.00 0.00 33.91 3.01
333 334 2.480555 CCGAAGTCATTGTGGCGC 59.519 61.111 0.00 0.00 0.00 6.53
334 335 2.480555 GCCGAAGTCATTGTGGCG 59.519 61.111 0.00 0.00 35.77 5.69
356 357 2.383245 ATAGCTCCGCCATTGGTCGG 62.383 60.000 24.05 24.05 41.33 4.79
358 359 0.179045 ACATAGCTCCGCCATTGGTC 60.179 55.000 4.26 0.00 0.00 4.02
363 364 0.541392 TCACAACATAGCTCCGCCAT 59.459 50.000 0.00 0.00 0.00 4.40
382 383 3.721370 GAGCCATGGCCCATTCGGT 62.721 63.158 33.14 12.23 43.17 4.69
385 386 3.599704 GCGAGCCATGGCCCATTC 61.600 66.667 33.14 21.99 43.17 2.67
401 402 4.317488 TGCTGAAAATTGAAAATCTGGGC 58.683 39.130 0.00 0.00 0.00 5.36
450 451 5.235850 TGTAGTGTTGTGTATTCATGGGT 57.764 39.130 0.00 0.00 0.00 4.51
459 460 3.875125 TGTTGCCTTGTAGTGTTGTGTA 58.125 40.909 0.00 0.00 0.00 2.90
460 461 2.717390 TGTTGCCTTGTAGTGTTGTGT 58.283 42.857 0.00 0.00 0.00 3.72
461 462 3.434637 GTTGTTGCCTTGTAGTGTTGTG 58.565 45.455 0.00 0.00 0.00 3.33
462 463 2.425668 GGTTGTTGCCTTGTAGTGTTGT 59.574 45.455 0.00 0.00 0.00 3.32
463 464 2.687935 AGGTTGTTGCCTTGTAGTGTTG 59.312 45.455 0.00 0.00 34.71 3.33
464 465 3.012934 AGGTTGTTGCCTTGTAGTGTT 57.987 42.857 0.00 0.00 34.71 3.32
466 467 4.002906 TCTAGGTTGTTGCCTTGTAGTG 57.997 45.455 0.00 0.00 39.94 2.74
467 468 4.910458 ATCTAGGTTGTTGCCTTGTAGT 57.090 40.909 0.00 0.00 39.94 2.73
478 480 6.653320 TGAATTTGACGCTAAATCTAGGTTGT 59.347 34.615 0.00 0.00 30.33 3.32
506 508 1.903404 AGAAAACTGGGCAAGCCGG 60.903 57.895 4.80 0.00 36.85 6.13
508 510 0.752658 AACAGAAAACTGGGCAAGCC 59.247 50.000 1.52 1.52 0.00 4.35
511 513 3.317993 GCTAGAAACAGAAAACTGGGCAA 59.682 43.478 0.00 0.00 0.00 4.52
512 514 2.884639 GCTAGAAACAGAAAACTGGGCA 59.115 45.455 0.00 0.00 0.00 5.36
679 681 3.695830 ACACTAGCGAAAAATCCTCCA 57.304 42.857 0.00 0.00 0.00 3.86
685 687 5.063880 AGTCCAAGAACACTAGCGAAAAAT 58.936 37.500 0.00 0.00 0.00 1.82
691 693 2.755650 ACAAGTCCAAGAACACTAGCG 58.244 47.619 0.00 0.00 0.00 4.26
930 950 8.314021 GTTCACTTTGATTTATCCCCATCTTTT 58.686 33.333 0.00 0.00 0.00 2.27
934 954 8.697507 ATAGTTCACTTTGATTTATCCCCATC 57.302 34.615 0.00 0.00 0.00 3.51
935 955 9.492730 AAATAGTTCACTTTGATTTATCCCCAT 57.507 29.630 0.00 0.00 0.00 4.00
936 956 8.893563 AAATAGTTCACTTTGATTTATCCCCA 57.106 30.769 0.00 0.00 0.00 4.96
981 1001 2.214216 CCGGTGGAGGGTCTTCACA 61.214 63.158 8.41 0.00 41.48 3.58
983 1003 2.606519 CCCGGTGGAGGGTCTTCA 60.607 66.667 0.00 0.00 46.38 3.02
1164 1217 3.608662 ACGAAGGCCGACGGTGAA 61.609 61.111 23.50 0.00 41.76 3.18
1191 1244 2.364324 GGTGATGCGGTTGGAGTAGATA 59.636 50.000 0.00 0.00 0.00 1.98
1334 1387 2.604174 CGGCGTGAACTCCACAACC 61.604 63.158 0.00 0.00 45.98 3.77
1356 1409 3.138304 CCTCACGGAATCTTTCACAACA 58.862 45.455 0.00 0.00 0.00 3.33
1369 1422 4.546829 AGTAAGCAATTAACCTCACGGA 57.453 40.909 0.00 0.00 0.00 4.69
1403 1459 0.322187 CCGGATCCGTTTTCCCTTGT 60.322 55.000 31.22 0.00 37.81 3.16
1414 1470 0.032130 ATTCACGACATCCGGATCCG 59.968 55.000 27.65 27.65 43.93 4.18
1459 1515 2.041620 TGGGCCTAATTCAAGCTTCTGT 59.958 45.455 4.53 0.00 0.00 3.41
1641 1697 2.676839 CAGCACATTTAGGACAGCTCTG 59.323 50.000 0.00 0.00 0.00 3.35
1690 1746 6.903883 ATAGACCAACATCGTGAACATAAC 57.096 37.500 0.00 0.00 0.00 1.89
1752 1809 0.374758 CAATCGACATTCCGTGCAGG 59.625 55.000 0.00 0.00 42.97 4.85
1774 1831 7.551617 CGCCTACCCGGATATAATTTCTAAATT 59.448 37.037 0.73 6.00 37.39 1.82
1810 1867 5.250774 ACCCTAAAGTTCAGTCACATGGTAT 59.749 40.000 0.00 0.00 0.00 2.73
1848 1909 4.890088 ACTCATCGTAAAGCCAACTAACA 58.110 39.130 0.00 0.00 0.00 2.41
1905 1966 9.224267 CAAATATGCTGGTATTATTCTAGTGCT 57.776 33.333 0.00 0.00 0.00 4.40
1933 1994 4.080863 CCCAACTGCAGTAGTTCCTAAGAT 60.081 45.833 22.01 0.00 46.55 2.40
1940 2001 3.059352 ACATCCCAACTGCAGTAGTTC 57.941 47.619 22.01 0.00 46.55 3.01
1943 2004 4.271049 CGAATTACATCCCAACTGCAGTAG 59.729 45.833 22.01 14.70 0.00 2.57
2081 2142 9.863845 TTCTAATGACAGACGACATATAAAACA 57.136 29.630 0.00 0.00 0.00 2.83
2441 2503 7.118723 TGAGAGGTGCATAGGACAAATATTTT 58.881 34.615 0.00 0.00 0.00 1.82
2876 2939 1.446907 ACAGACATAAGTGCAGCAGC 58.553 50.000 0.00 0.00 42.57 5.25
2950 3013 6.205464 TCTGAAAGAGCAGTTTTTGTATCTGG 59.795 38.462 0.00 0.00 38.67 3.86
2991 3054 3.246619 CGACTGACTCTTACCAAGAAGC 58.753 50.000 0.00 0.00 37.02 3.86
3154 3224 7.094162 TGGATTTTTGTCACAACACTTCAACTA 60.094 33.333 0.00 0.00 34.35 2.24
3158 3228 5.651387 TGGATTTTTGTCACAACACTTCA 57.349 34.783 0.00 0.00 34.35 3.02
3282 3352 8.321353 TGAAACCAAGTAAGTCAGATGATACAT 58.679 33.333 0.00 0.00 0.00 2.29
3291 3361 6.049149 TGAAGACTGAAACCAAGTAAGTCAG 58.951 40.000 4.16 0.00 39.77 3.51
3322 3392 6.822676 GGCAATGACATTCCAATAAAATTCCA 59.177 34.615 0.00 0.00 0.00 3.53
3324 3394 7.846644 TGGCAATGACATTCCAATAAAATTC 57.153 32.000 13.65 0.00 0.00 2.17
3339 3409 3.496884 TCACTACTTCGTTTGGCAATGAC 59.503 43.478 0.00 0.00 0.00 3.06
3346 3416 5.816919 ACAACATTTCACTACTTCGTTTGG 58.183 37.500 0.00 0.00 0.00 3.28
3372 3442 4.499865 GCTGCAAAGATACTCGGATCTACA 60.500 45.833 0.00 0.00 35.01 2.74
3422 3492 1.168407 TCAGCACTGCTTGAACCAGC 61.168 55.000 0.00 0.00 36.40 4.85
3527 3604 2.582436 GACCGATTCGCTTCCCCA 59.418 61.111 0.00 0.00 0.00 4.96
3560 3637 6.709281 TGCATATTGTTTTCCAATTCACCAT 58.291 32.000 0.00 0.00 41.01 3.55
3658 3735 1.549170 AGCAAGTAGTCCCACCTAACG 59.451 52.381 0.00 0.00 0.00 3.18
3698 3775 0.036388 CGGAAGCAAGTAGGGAAGCA 60.036 55.000 0.00 0.00 0.00 3.91
3769 3846 1.367346 TGGGGTCACTAGCAATTCCA 58.633 50.000 0.00 0.00 0.00 3.53
3779 3856 3.583054 CATGCTTGATGGGGTCACT 57.417 52.632 0.00 0.00 36.32 3.41
3834 3911 1.764851 GATCGTGAGGATGAAGAGCG 58.235 55.000 0.00 0.00 34.82 5.03
3848 3925 2.181021 GTGAAGCGGGTCGATCGT 59.819 61.111 15.94 0.00 0.00 3.73
3954 4032 0.318445 GGCACAAGAAACAGCAGCAG 60.318 55.000 0.00 0.00 0.00 4.24
3975 4053 8.752005 CAAGAATTGGACATCCTCCTTATAAA 57.248 34.615 0.00 0.00 43.94 1.40
3998 4076 1.340017 GGAAGCTAGCATGGTGGACAA 60.340 52.381 18.83 0.00 0.00 3.18
4032 4110 1.136828 ACAGTTAGTGGACAAGCCCA 58.863 50.000 0.00 0.00 34.97 5.36
4051 4129 3.146066 GGGTGCAACAATACTCTTGACA 58.854 45.455 3.06 0.00 39.98 3.58
4053 4131 3.500448 TGGGTGCAACAATACTCTTGA 57.500 42.857 3.06 0.00 39.98 3.02
4069 4147 1.006281 ACATTGGCACATCTGATGGGT 59.994 47.619 20.24 0.00 39.30 4.51
4123 4201 2.314071 TAGGGAAGGAGGAACGACAA 57.686 50.000 0.00 0.00 0.00 3.18
4170 4248 9.036671 GTAAGTGAATCCTCTTAAGTATCTTGC 57.963 37.037 1.63 0.00 32.27 4.01
4176 4254 9.924650 GAAGTTGTAAGTGAATCCTCTTAAGTA 57.075 33.333 1.63 0.00 32.27 2.24
4330 4408 0.908180 CCTTTAGGACCTCCACCGGT 60.908 60.000 0.00 0.00 40.80 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.