AutoCloner

Multiple sequence alignment - TraesCS6B01G284500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G284500	chr6B	100.000	3157	0	0	1	3157	513134515	513137671	0.000000e+00	5830.0
1	TraesCS6B01G284500	chr6D	93.695	2633	101	33	1	2585	313189322	313186707	0.000000e+00	3882.0
2	TraesCS6B01G284500	chr6A	90.453	2671	118	54	6	2568	450109414	450106773	0.000000e+00	3393.0
3	TraesCS6B01G284500	chr3B	85.983	585	60	10	2588	3157	172701855	172701278	9.680000e-170	606.0
4	TraesCS6B01G284500	chr4B	84.720	589	60	14	2599	3157	605845926	605845338	2.130000e-156	562.0
5	TraesCS6B01G284500	chr4B	93.396	318	18	2	1015	1329	27404958	27404641	4.770000e-128	468.0
6	TraesCS6B01G284500	chr4B	86.396	419	52	5	2588	3004	605847054	605846639	1.340000e-123	453.0
7	TraesCS6B01G284500	chr4B	85.545	422	55	4	2584	3004	90266043	90266459	1.340000e-118	436.0
8	TraesCS6B01G284500	chr4A	86.635	419	47	5	2588	3004	680565076	680564665	3.710000e-124	455.0
9	TraesCS6B01G284500	chr2D	86.364	418	48	4	2588	3003	166314323	166313913	6.210000e-122	448.0
10	TraesCS6B01G284500	chr2D	86.667	405	45	4	2589	2991	127257292	127257689	1.040000e-119	440.0
11	TraesCS6B01G284500	chr2D	86.580	231	31	0	1136	1366	492022862	492022632	4.040000e-64	255.0
12	TraesCS6B01G284500	chrUn	86.632	389	44	3	2604	2991	104042491	104042872	1.050000e-114	424.0
13	TraesCS6B01G284500	chr7D	85.071	422	53	4	2585	3003	602173597	602173183	3.760000e-114	422.0
14	TraesCS6B01G284500	chr7D	91.071	56	5	0	1826	1881	618489510	618489565	3.380000e-10	76.8
15	TraesCS6B01G284500	chr2B	87.172	343	36	3	2599	2939	768552168	768552504	1.780000e-102	383.0
16	TraesCS6B01G284500	chr2B	87.273	220	28	0	1147	1366	576745132	576744913	5.230000e-63	252.0
17	TraesCS6B01G284500	chr5D	83.388	307	41	9	2585	2881	126372937	126372631	3.100000e-70	276.0
18	TraesCS6B01G284500	chr5D	91.071	56	5	0	1826	1881	368333269	368333324	3.380000e-10	76.8
19	TraesCS6B01G284500	chr2A	87.013	231	30	0	1136	1366	637223291	637223061	8.690000e-66	261.0
20	TraesCS6B01G284500	chr1A	77.910	421	76	12	1461	1877	319320525	319320932	2.430000e-61	246.0
21	TraesCS6B01G284500	chr1A	91.071	56	5	0	1826	1881	497504520	497504465	3.380000e-10	76.8
22	TraesCS6B01G284500	chr1D	77.251	422	79	13	1460	1877	249560541	249560949	6.810000e-57	231.0
23	TraesCS6B01G284500	chr1D	91.071	56	5	0	1826	1881	401667225	401667170	3.380000e-10	76.8
24	TraesCS6B01G284500	chr5A	98.450	129	2	0	1201	1329	645412949	645412821	8.810000e-56	228.0
25	TraesCS6B01G284500	chr7A	97.674	129	3	0	1201	1329	83536322	83536450	4.100000e-54	222.0
26	TraesCS6B01G284500	chr7A	92.857	56	4	0	1826	1881	712180986	712181041	7.260000e-12	82.4
27	TraesCS6B01G284500	chr1B	86.408	206	24	3	2588	2789	270787851	270788056	4.100000e-54	222.0
28	TraesCS6B01G284500	chr1B	80.365	219	40	3	1147	1365	364919506	364919291	2.520000e-36	163.0
29	TraesCS6B01G284500	chr3A	81.818	198	27	7	2588	2782	687134869	687135060	1.170000e-34	158.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G284500	chr6B	513134515	513137671	3156	False	5830.0	5830	100.000	1	3157	1	chr6B.!!$F1	3156
1	TraesCS6B01G284500	chr6D	313186707	313189322	2615	True	3882.0	3882	93.695	1	2585	1	chr6D.!!$R1	2584
2	TraesCS6B01G284500	chr6A	450106773	450109414	2641	True	3393.0	3393	90.453	6	2568	1	chr6A.!!$R1	2562
3	TraesCS6B01G284500	chr3B	172701278	172701855	577	True	606.0	606	85.983	2588	3157	1	chr3B.!!$R1	569
4	TraesCS6B01G284500	chr4B	605845338	605847054	1716	True	507.5	562	85.558	2588	3157	2	chr4B.!!$R2	569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
210	220	0.108615	GTCGACAGCCATACAGTGCT	60.109	55.0	11.55	0.0	38.67	4.40	F
824	882	0.523072	CAGTGGCCATTCTTTGACCG	59.477	55.0	9.72	0.0	0.00	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1444	1537	1.082104	GCACGCGGGAAAGAAACAG	60.082	57.895	15.48	0.00	0.00	3.16	R
2378	2488	0.030638	AAGACCACATGCGTGTTTGC	59.969	50.000	9.37	1.18	41.93	3.68	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	1.860950	CGTATGCCCATCGTTTCTGAG	59.139	52.381	0.00	0.00	0.00	3.35
36	37	2.738643	CGTATGCCCATCGTTTCTGAGT	60.739	50.000	0.00	0.00	0.00	3.41
48	52	7.492669	CCATCGTTTCTGAGTACTGAAATGTAT	59.507	37.037	19.56	12.79	44.12	2.29
79	84	1.066858	ACAGTAGTCGTTGGCAGGATG	60.067	52.381	0.00	0.00	40.87	3.51
92	97	1.269102	GCAGGATGAGATGCAATGCAC	60.269	52.381	11.23	4.80	39.48	4.57
120	126	5.163814	GCAGTGCTCCACTATGAAAAAGTAG	60.164	44.000	8.18	0.00	43.43	2.57
123	129	7.173218	CAGTGCTCCACTATGAAAAAGTAGAAA	59.827	37.037	0.00	0.00	43.43	2.52
124	130	7.719633	AGTGCTCCACTATGAAAAAGTAGAAAA	59.280	33.333	0.00	0.00	43.46	2.29
166	176	0.913934	TCTGCATTACTCCAGGGGCA	60.914	55.000	0.00	0.00	0.00	5.36
210	220	0.108615	GTCGACAGCCATACAGTGCT	60.109	55.000	11.55	0.00	38.67	4.40
211	221	1.134367	GTCGACAGCCATACAGTGCTA	59.866	52.381	11.55	0.00	35.69	3.49
212	222	1.405463	TCGACAGCCATACAGTGCTAG	59.595	52.381	0.00	0.00	35.69	3.42
508	537	1.839747	ACTTGGTGCCGGTAGGACA	60.840	57.895	1.90	0.00	41.02	4.02
512	541	0.980754	TGGTGCCGGTAGGACATCAT	60.981	55.000	1.90	0.00	41.02	2.45
534	563	0.668535	TCCGTGCATCCGATCTAGTG	59.331	55.000	0.00	0.00	0.00	2.74
535	564	0.668535	CCGTGCATCCGATCTAGTGA	59.331	55.000	0.00	0.00	0.00	3.41
550	585	3.860605	TGAGTGCGTGCCCACTGT	61.861	61.111	6.51	0.00	45.55	3.55
684	720	2.441001	CTGATAAATGCAGGGGAGGAGT	59.559	50.000	0.00	0.00	0.00	3.85
687	723	1.972588	AAATGCAGGGGAGGAGTAGT	58.027	50.000	0.00	0.00	0.00	2.73
689	725	3.352611	AATGCAGGGGAGGAGTAGTAT	57.647	47.619	0.00	0.00	0.00	2.12
810	868	2.762535	ATAACAACGGACTCCAGTGG	57.237	50.000	1.40	1.40	0.00	4.00
824	882	0.523072	CAGTGGCCATTCTTTGACCG	59.477	55.000	9.72	0.00	0.00	4.79
830	888	1.000896	CATTCTTTGACCGGGCCCT	60.001	57.895	22.43	0.00	0.00	5.19
831	889	1.032114	CATTCTTTGACCGGGCCCTC	61.032	60.000	22.43	12.67	0.00	4.30
832	890	1.208165	ATTCTTTGACCGGGCCCTCT	61.208	55.000	22.43	3.43	0.00	3.69
833	891	2.045926	CTTTGACCGGGCCCTCTG	60.046	66.667	22.43	10.93	0.00	3.35
913	976	2.802106	CGACGGGAAGAGAGCCTC	59.198	66.667	0.00	0.00	0.00	4.70
914	977	2.802106	GACGGGAAGAGAGCCTCG	59.198	66.667	0.00	0.00	35.36	4.63
1032	1101	1.978617	CGGGCTGTTGGATTGCCTT	60.979	57.895	0.00	0.00	45.45	4.35
1037	1106	0.962356	CTGTTGGATTGCCTTCGCCT	60.962	55.000	0.00	0.00	34.31	5.52
1194	1266	1.153823	CTTCTCGTCCCGCGTGATT	60.154	57.895	4.92	0.00	41.75	2.57
1350	1422	4.838152	CCCCACATCGTCCGCCTG	62.838	72.222	0.00	0.00	0.00	4.85
1366	1438	3.342370	CTGCTCGGCTACTGCGACA	62.342	63.158	0.00	0.00	40.82	4.35
1416	1489	3.773418	TCGTTTCTTGGTCAACCCATA	57.227	42.857	0.00	0.00	44.74	2.74
1423	1496	4.331968	TCTTGGTCAACCCATACACATTC	58.668	43.478	0.00	0.00	44.74	2.67
1424	1497	3.797559	TGGTCAACCCATACACATTCA	57.202	42.857	0.00	0.00	38.72	2.57
1426	1499	2.418628	GGTCAACCCATACACATTCACG	59.581	50.000	0.00	0.00	0.00	4.35
1428	1501	2.083774	CAACCCATACACATTCACGCT	58.916	47.619	0.00	0.00	0.00	5.07
1429	1502	2.487762	CAACCCATACACATTCACGCTT	59.512	45.455	0.00	0.00	0.00	4.68
1430	1503	2.356135	ACCCATACACATTCACGCTTC	58.644	47.619	0.00	0.00	0.00	3.86
1431	1504	2.027192	ACCCATACACATTCACGCTTCT	60.027	45.455	0.00	0.00	0.00	2.85
1432	1505	2.609459	CCCATACACATTCACGCTTCTC	59.391	50.000	0.00	0.00	0.00	2.87
1433	1506	3.525537	CCATACACATTCACGCTTCTCT	58.474	45.455	0.00	0.00	0.00	3.10
1435	1508	2.533266	ACACATTCACGCTTCTCTGT	57.467	45.000	0.00	0.00	0.00	3.41
1436	1509	3.660501	ACACATTCACGCTTCTCTGTA	57.339	42.857	0.00	0.00	0.00	2.74
1444	1537	1.407258	ACGCTTCTCTGTAGCTGATCC	59.593	52.381	0.00	0.00	36.49	3.36
1520	1613	2.407428	CGACCTGCACGAGAGGCTA	61.407	63.158	0.00	0.00	33.39	3.93
1622	1715	1.760086	CCTCCACGAGAGCCAGGAT	60.760	63.158	0.00	0.00	41.74	3.24
1644	1737	4.429212	CGGTCATCCACGGCGACA	62.429	66.667	16.62	0.00	0.00	4.35
2053	2146	4.680237	CAACGTCAGCTCCGGGCA	62.680	66.667	15.92	0.00	44.79	5.36
2228	2330	7.901874	TTTCGTCACTTTGTTATTGTAAAGC	57.098	32.000	0.00	0.00	37.40	3.51
2309	2419	4.898829	GCATGTAGTGGCACATTAATCA	57.101	40.909	21.41	9.27	44.52	2.57
2311	2421	5.835257	GCATGTAGTGGCACATTAATCAAT	58.165	37.500	21.41	0.00	44.52	2.57
2315	2425	6.186957	TGTAGTGGCACATTAATCAATTCCT	58.813	36.000	21.41	0.00	44.52	3.36
2378	2488	2.471743	GGAGTACGCGCTTAAGCTAATG	59.528	50.000	24.33	13.37	39.32	1.90
2449	2559	5.871524	TGAGGAAATCAAAGTCGATCTTCAG	59.128	40.000	0.00	0.00	34.02	3.02
2451	2561	4.201861	GGAAATCAAAGTCGATCTTCAGCC	60.202	45.833	0.00	0.00	35.02	4.85
2502	2612	2.019249	CATGTGATCCACCATGGTCAC	58.981	52.381	21.75	21.75	42.99	3.67
2509	2619	3.797559	TCCACCATGGTCACAAATGTA	57.202	42.857	16.53	0.00	39.03	2.29
2515	2625	6.015856	CCACCATGGTCACAAATGTAGTTTAA	60.016	38.462	16.53	0.00	31.35	1.52
2516	2626	6.861055	CACCATGGTCACAAATGTAGTTTAAC	59.139	38.462	16.53	0.00	0.00	2.01
2517	2627	6.015772	ACCATGGTCACAAATGTAGTTTAACC	60.016	38.462	13.00	0.00	0.00	2.85
2554	2673	4.783621	TGCATGCACTCCCCTCGC	62.784	66.667	18.46	0.00	0.00	5.03
2573	2692	4.320456	CCCCGCCGATCTGATGGG	62.320	72.222	13.73	13.73	39.69	4.00
2585	2704	4.141869	CGATCTGATGGGCACATATCCATA	60.142	45.833	0.00	0.00	43.20	2.74
2586	2705	5.454329	CGATCTGATGGGCACATATCCATAT	60.454	44.000	0.00	0.00	43.20	1.78
2595	2714	7.112122	TGGGCACATATCCATATGAGTTAATC	58.888	38.462	12.61	0.00	42.05	1.75
2624	2743	8.970020	ACAAAAGTATCATAATTGAGGCATTGA	58.030	29.630	0.00	0.00	34.73	2.57
2634	2753	4.877378	TTGAGGCATTGAAAGCAGATTT	57.123	36.364	0.00	0.00	0.00	2.17
2635	2754	5.981088	TTGAGGCATTGAAAGCAGATTTA	57.019	34.783	0.00	0.00	0.00	1.40
2638	2757	7.828508	TGAGGCATTGAAAGCAGATTTATAT	57.171	32.000	0.00	0.00	0.00	0.86
2721	2841	9.611284	ATCTAAATCGCGTATAAACACGTATTA	57.389	29.630	5.77	0.00	43.79	0.98
2724	2844	7.448588	AATCGCGTATAAACACGTATTAACA	57.551	32.000	5.77	0.00	43.79	2.41
2815	4057	0.842635	GGCACCTCCTTCATCCTCAT	59.157	55.000	0.00	0.00	0.00	2.90
2820	4062	0.179065	CTCCTTCATCCTCATGCGCA	60.179	55.000	14.96	14.96	0.00	6.09
3011	4265	6.155049	CCTTCCATTCTTTCTTCTCTCTCTCT	59.845	42.308	0.00	0.00	0.00	3.10
3035	4289	1.064463	ACCCAGAGCTCTCTCTCTCTG	60.064	57.143	14.96	11.19	46.32	3.35
3054	4320	2.224159	TGTCTTGCCCACTCCCCTC	61.224	63.158	0.00	0.00	0.00	4.30
3069	4335	3.775654	CTCGGACAGGAGCCCACC	61.776	72.222	0.00	0.00	0.00	4.61
3088	4354	3.908081	CCAAGCCGCCATGGATGC	61.908	66.667	18.40	16.91	42.00	3.91
3093	4359	3.882326	CCGCCATGGATGCCCTCT	61.882	66.667	18.40	0.00	42.00	3.69
3094	4360	2.194056	CGCCATGGATGCCCTCTT	59.806	61.111	18.40	0.00	0.00	2.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	52	6.018832	GCCAACGACTACTGTGTTAAAACTAA	60.019	38.462	0.00	0.00	0.00	2.24
79	84	3.324170	GCAGTGTGCATTGCATCTC	57.676	52.632	15.49	9.37	44.26	2.75
92	97	1.066645	TCATAGTGGAGCACTGCAGTG	60.067	52.381	37.09	37.09	45.01	3.66
120	126	6.926272	CCTGCTACTACTGTCCATAGATTTTC	59.074	42.308	0.00	0.00	0.00	2.29
123	129	5.706447	TCCTGCTACTACTGTCCATAGATT	58.294	41.667	0.00	0.00	0.00	2.40
124	130	5.326283	TCCTGCTACTACTGTCCATAGAT	57.674	43.478	0.00	0.00	0.00	1.98
166	176	4.711949	CTGCGCACCAGAGGGCTT	62.712	66.667	5.66	0.00	46.41	4.35
210	220	6.862469	ACTTGTTGCCCATTACTACTACTA	57.138	37.500	0.00	0.00	0.00	1.82
211	221	5.757099	ACTTGTTGCCCATTACTACTACT	57.243	39.130	0.00	0.00	0.00	2.57
212	222	6.047231	CCTACTTGTTGCCCATTACTACTAC	58.953	44.000	0.00	0.00	0.00	2.73
284	294	2.161410	CGCTGCAAAAGGTAAGCACATA	59.839	45.455	0.00	0.00	35.33	2.29
289	310	0.730494	CTGCGCTGCAAAAGGTAAGC	60.730	55.000	9.73	0.00	38.41	3.09
457	478	4.481368	TTCCTCGTGTAATGTAATGGCT	57.519	40.909	0.00	0.00	0.00	4.75
467	488	1.001181	CGGGACCTTTTCCTCGTGTAA	59.999	52.381	0.00	0.00	45.09	2.41
534	563	2.591715	AACAGTGGGCACGCACTC	60.592	61.111	16.51	0.00	37.67	3.51
535	564	2.901840	CAACAGTGGGCACGCACT	60.902	61.111	13.97	13.97	39.70	4.40
595	631	0.546122	TTGGACTGTTGAGTGGTGCT	59.454	50.000	0.00	0.00	30.16	4.40
601	637	4.647564	ATTCCTGATTGGACTGTTGAGT	57.352	40.909	0.00	0.00	46.14	3.41
650	686	5.990386	TGCATTTATCAGCATGTGTGTTTTT	59.010	32.000	0.00	0.00	35.51	1.94
664	700	2.492025	ACTCCTCCCCTGCATTTATCA	58.508	47.619	0.00	0.00	0.00	2.15
810	868	2.710902	GGCCCGGTCAAAGAATGGC	61.711	63.158	0.00	0.00	38.16	4.40
913	976	5.583061	AGATAGCTACTGGAATAGATCGACG	59.417	44.000	0.00	0.00	0.00	5.12
914	977	6.037830	GGAGATAGCTACTGGAATAGATCGAC	59.962	46.154	0.00	0.00	0.00	4.20
1350	1422	1.736645	TTTGTCGCAGTAGCCGAGC	60.737	57.895	0.00	0.00	37.52	5.03
1416	1489	2.533266	ACAGAGAAGCGTGAATGTGT	57.467	45.000	0.00	0.00	0.00	3.72
1423	1496	2.458951	GATCAGCTACAGAGAAGCGTG	58.541	52.381	0.00	0.00	44.87	5.34
1424	1497	1.407258	GGATCAGCTACAGAGAAGCGT	59.593	52.381	0.00	0.00	44.87	5.07
1426	1499	2.430332	ACAGGATCAGCTACAGAGAAGC	59.570	50.000	0.00	0.00	40.40	3.86
1428	1501	4.774726	AGAAACAGGATCAGCTACAGAGAA	59.225	41.667	0.00	0.00	0.00	2.87
1429	1502	4.348486	AGAAACAGGATCAGCTACAGAGA	58.652	43.478	0.00	0.00	0.00	3.10
1430	1503	4.734398	AGAAACAGGATCAGCTACAGAG	57.266	45.455	0.00	0.00	0.00	3.35
1431	1504	5.482908	GAAAGAAACAGGATCAGCTACAGA	58.517	41.667	0.00	0.00	0.00	3.41
1432	1505	4.633565	GGAAAGAAACAGGATCAGCTACAG	59.366	45.833	0.00	0.00	0.00	2.74
1433	1506	4.565652	GGGAAAGAAACAGGATCAGCTACA	60.566	45.833	0.00	0.00	0.00	2.74
1435	1508	3.369471	CGGGAAAGAAACAGGATCAGCTA	60.369	47.826	0.00	0.00	0.00	3.32
1436	1509	2.616510	CGGGAAAGAAACAGGATCAGCT	60.617	50.000	0.00	0.00	0.00	4.24
1444	1537	1.082104	GCACGCGGGAAAGAAACAG	60.082	57.895	15.48	0.00	0.00	3.16
1882	1975	4.783621	TGTCTGCGCAGATGGCCC	62.784	66.667	39.91	27.18	39.97	5.80
1969	2062	1.303888	TACGCGTCTCCCAACCTCT	60.304	57.895	18.63	0.00	0.00	3.69
2119	2212	3.391665	CTGGCCGGCTTAGGTCCAG	62.392	68.421	28.56	18.87	43.63	3.86
2148	2241	4.794169	ACGTACGTACACCTTTACGAAAT	58.206	39.130	21.41	0.00	46.37	2.17
2228	2330	5.341617	GGAGTTCAACTACTAACTGATCCG	58.658	45.833	0.00	0.00	36.10	4.18
2300	2410	8.943085	AGATCTACAGGAGGAATTGATTAATGT	58.057	33.333	0.00	0.00	0.00	2.71
2309	2419	6.670027	ACTGTGTAAGATCTACAGGAGGAATT	59.330	38.462	22.27	3.24	44.56	2.17
2311	2421	5.580998	ACTGTGTAAGATCTACAGGAGGAA	58.419	41.667	22.27	0.00	44.56	3.36
2315	2425	6.665992	AACAACTGTGTAAGATCTACAGGA	57.334	37.500	22.27	6.49	44.56	3.86
2356	2466	3.296584	GCTTAAGCGCGTACTCCG	58.703	61.111	12.53	0.00	40.40	4.63
2378	2488	0.030638	AAGACCACATGCGTGTTTGC	59.969	50.000	9.37	1.18	41.93	3.68
2393	2503	2.670509	CGTCTCAAAGTACCCGGAAGAC	60.671	54.545	0.73	0.00	0.00	3.01
2472	2582	2.222678	GTGGATCACATGCATTCGCTAG	59.777	50.000	0.00	0.00	35.01	3.42
2502	2612	4.481463	CAAGCCGGGTTAAACTACATTTG	58.519	43.478	20.28	0.00	0.00	2.32
2509	2619	1.834188	CATCCAAGCCGGGTTAAACT	58.166	50.000	20.28	1.18	34.36	2.66
2517	2627	3.499737	GACGTGCATCCAAGCCGG	61.500	66.667	0.00	0.00	34.16	6.13
2573	2692	7.834068	ACGATTAACTCATATGGATATGTGC	57.166	36.000	2.13	0.00	40.69	4.57
2595	2714	7.915508	TGCCTCAATTATGATACTTTTGTACG	58.084	34.615	0.00	0.00	37.78	3.67
2607	2726	5.653330	TCTGCTTTCAATGCCTCAATTATGA	59.347	36.000	0.00	0.00	0.00	2.15
2610	2729	6.534475	AATCTGCTTTCAATGCCTCAATTA	57.466	33.333	0.00	0.00	0.00	1.40
2616	2735	7.828508	TGATATAAATCTGCTTTCAATGCCT	57.171	32.000	0.00	0.00	32.93	4.75
2638	2757	9.421806	CTGGCATGTAAAAATTATCAAACTTGA	57.578	29.630	0.00	0.00	42.14	3.02
2647	2766	8.361169	ACTTGGTACTGGCATGTAAAAATTAT	57.639	30.769	0.00	0.00	0.00	1.28
2714	2834	5.577945	CCGGTCAAATACACTGTTAATACGT	59.422	40.000	0.00	0.00	0.00	3.57
2721	2841	1.153353	CGCCGGTCAAATACACTGTT	58.847	50.000	1.90	0.00	0.00	3.16
2724	2844	1.078708	CCCGCCGGTCAAATACACT	60.079	57.895	1.90	0.00	0.00	3.55
2796	4038	0.842635	ATGAGGATGAAGGAGGTGCC	59.157	55.000	0.00	0.00	0.00	5.01
2944	4186	4.436998	CTGGTCCTGGTCGTCGGC	62.437	72.222	0.00	0.00	0.00	5.54
2979	4221	6.022315	AGAAGAAAGAATGGAAGGAGAGAGA	58.978	40.000	0.00	0.00	0.00	3.10
3011	4265	2.968737	GAGAGAGCTCTGGGTGTGA	58.031	57.895	23.91	0.00	40.61	3.58
3035	4289	2.034221	GGGGAGTGGGCAAGACAC	59.966	66.667	0.00	0.00	39.10	3.67
3037	4291	2.671682	GAGGGGAGTGGGCAAGAC	59.328	66.667	0.00	0.00	0.00	3.01
3088	4354	1.524482	GGCTGGAGCTACAAGAGGG	59.476	63.158	0.00	0.00	41.70	4.30
3093	4359	2.978824	GTCGGGCTGGAGCTACAA	59.021	61.111	0.00	0.00	41.70	2.41
3094	4360	3.449227	CGTCGGGCTGGAGCTACA	61.449	66.667	0.00	0.00	41.70	2.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.