Multiple sequence alignment - TraesCS6B01G283500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G283500 chr6B 100.000 2522 0 0 1 2522 511713109 511710588 0.000000e+00 4658.0
1 TraesCS6B01G283500 chr6B 88.119 202 17 6 81 281 160661002 160660807 1.510000e-57 233.0
2 TraesCS6B01G283500 chr6B 81.017 295 27 18 1 272 158160395 158160683 9.140000e-50 207.0
3 TraesCS6B01G283500 chr6B 91.250 80 6 1 1 79 157913147 157913068 9.540000e-20 108.0
4 TraesCS6B01G283500 chr2B 92.903 2198 123 17 348 2522 441885053 441887240 0.000000e+00 3164.0
5 TraesCS6B01G283500 chr2B 90.183 927 66 7 352 1270 142989455 142988546 0.000000e+00 1184.0
6 TraesCS6B01G283500 chr2B 94.044 319 19 0 2204 2522 534409968 534410286 3.770000e-133 484.0
7 TraesCS6B01G283500 chr4D 92.179 2212 125 27 356 2522 481887026 481889234 0.000000e+00 3083.0
8 TraesCS6B01G283500 chr4D 93.202 1927 105 14 354 2263 119369760 119367843 0.000000e+00 2809.0
9 TraesCS6B01G283500 chr4D 92.950 1915 95 18 353 2239 486565784 486563882 0.000000e+00 2752.0
10 TraesCS6B01G283500 chr4D 79.252 294 28 22 1 271 223628360 223628643 9.270000e-40 174.0
11 TraesCS6B01G283500 chr4D 82.703 185 22 10 91 272 505004385 505004562 3.360000e-34 156.0
12 TraesCS6B01G283500 chr4D 80.435 184 25 10 95 272 272382526 272382348 2.040000e-26 130.0
13 TraesCS6B01G283500 chr4D 78.528 163 24 10 117 272 10756157 10755999 2.070000e-16 97.1
14 TraesCS6B01G283500 chr1D 91.640 2225 124 27 353 2522 430108487 430110704 0.000000e+00 3022.0
15 TraesCS6B01G283500 chr1D 91.712 2220 117 25 355 2522 278102468 278100264 0.000000e+00 3018.0
16 TraesCS6B01G283500 chr1D 90.942 2208 140 24 355 2512 250223367 250225564 0.000000e+00 2915.0
17 TraesCS6B01G283500 chr1D 93.580 1916 101 10 356 2255 303344960 303346869 0.000000e+00 2837.0
18 TraesCS6B01G283500 chr1D 90.299 2206 146 27 354 2522 424634905 424637079 0.000000e+00 2826.0
19 TraesCS6B01G283500 chr1D 90.901 1132 67 9 355 1473 139135263 139134155 0.000000e+00 1487.0
20 TraesCS6B01G283500 chr1D 91.434 1004 64 8 354 1345 446540375 446541368 0.000000e+00 1358.0
21 TraesCS6B01G283500 chr1D 90.661 696 48 8 354 1037 441745115 441744425 0.000000e+00 909.0
22 TraesCS6B01G283500 chr1D 88.889 459 40 5 2075 2522 236097094 236096636 2.830000e-154 555.0
23 TraesCS6B01G283500 chr1D 88.489 278 19 5 357 623 398866615 398866340 8.700000e-85 324.0
24 TraesCS6B01G283500 chr1D 82.990 194 16 13 82 271 475624161 475623981 2.600000e-35 159.0
25 TraesCS6B01G283500 chr1D 82.105 190 22 11 90 272 337212309 337212493 4.350000e-33 152.0
26 TraesCS6B01G283500 chr1D 81.026 195 17 16 92 273 478935222 478935035 1.220000e-28 137.0
27 TraesCS6B01G283500 chr1D 80.435 184 25 10 95 272 462009682 462009860 2.040000e-26 130.0
28 TraesCS6B01G283500 chr1D 81.657 169 18 11 110 274 50989390 50989549 7.320000e-26 128.0
29 TraesCS6B01G283500 chr1D 80.000 195 16 21 82 273 111980057 111980231 3.410000e-24 122.0
30 TraesCS6B01G283500 chr1D 88.298 94 10 1 179 272 66379350 66379442 7.370000e-21 111.0
31 TraesCS6B01G283500 chr1D 86.735 98 7 6 179 273 250703682 250703776 1.230000e-18 104.0
32 TraesCS6B01G283500 chr1D 84.466 103 10 6 176 275 208854896 208854995 2.070000e-16 97.1
33 TraesCS6B01G283500 chr6D 91.434 2218 125 27 354 2522 325418870 325416669 0.000000e+00 2983.0
34 TraesCS6B01G283500 chr6D 90.836 2117 112 33 355 2420 447882347 447880262 0.000000e+00 2760.0
35 TraesCS6B01G283500 chr6D 92.451 1934 113 17 352 2263 347439908 347437986 0.000000e+00 2732.0
36 TraesCS6B01G283500 chr6D 92.901 1296 66 8 353 1627 421840966 421842256 0.000000e+00 1860.0
37 TraesCS6B01G283500 chr6D 92.668 1132 60 13 354 1473 41924608 41923488 0.000000e+00 1609.0
38 TraesCS6B01G283500 chr6D 78.596 285 34 20 4 273 83174870 83174598 2.010000e-36 163.0
39 TraesCS6B01G283500 chr6D 81.579 190 23 9 89 273 412196980 412197162 2.020000e-31 147.0
40 TraesCS6B01G283500 chr6D 79.042 167 20 13 117 274 139575054 139574894 1.600000e-17 100.0
41 TraesCS6B01G283500 chr6D 78.528 163 25 10 117 272 63718777 63718936 5.740000e-17 99.0
42 TraesCS6B01G283500 chr6D 78.916 166 20 11 112 275 147894399 147894247 5.740000e-17 99.0
43 TraesCS6B01G283500 chr2D 90.769 2210 157 19 354 2522 644015512 644013309 0.000000e+00 2907.0
44 TraesCS6B01G283500 chr2D 92.499 1933 94 18 354 2263 500667213 500665309 0.000000e+00 2719.0
45 TraesCS6B01G283500 chr2D 91.505 671 38 6 355 1011 50139065 50138400 0.000000e+00 905.0
46 TraesCS6B01G283500 chr2D 83.889 180 19 9 97 272 26455785 26455958 2.010000e-36 163.0
47 TraesCS6B01G283500 chr2D 85.542 83 4 5 272 354 21532136 21532210 2.080000e-11 80.5
48 TraesCS6B01G283500 chr7D 93.691 1918 94 16 354 2255 85019321 85021227 0.000000e+00 2846.0
49 TraesCS6B01G283500 chr7D 91.297 1195 67 12 353 1533 56936786 56937957 0.000000e+00 1596.0
50 TraesCS6B01G283500 chr7B 93.584 1917 101 9 355 2255 442357638 442359548 0.000000e+00 2839.0
51 TraesCS6B01G283500 chr7B 91.635 526 25 9 2016 2522 8457989 8457464 0.000000e+00 710.0
52 TraesCS6B01G283500 chr7B 87.000 200 15 9 80 277 1880477 1880287 5.460000e-52 215.0
53 TraesCS6B01G283500 chrUn 93.184 1922 100 13 355 2258 105335964 105334056 0.000000e+00 2795.0
54 TraesCS6B01G283500 chrUn 90.511 822 55 10 351 1160 108802910 108803720 0.000000e+00 1064.0
55 TraesCS6B01G283500 chrUn 80.928 194 19 16 82 272 32325533 32325355 1.220000e-28 137.0
56 TraesCS6B01G283500 chrUn 86.139 101 9 5 179 275 410432203 410432302 1.230000e-18 104.0
57 TraesCS6B01G283500 chr5B 89.428 2204 184 32 356 2522 615401475 615399284 0.000000e+00 2734.0
58 TraesCS6B01G283500 chr5B 89.955 2011 155 18 356 2325 635767314 635765310 0.000000e+00 2551.0
59 TraesCS6B01G283500 chr5B 89.060 521 42 7 353 871 128209013 128208506 1.270000e-177 632.0
60 TraesCS6B01G283500 chr5B 87.766 188 15 6 85 272 158732819 158732998 1.970000e-51 213.0
61 TraesCS6B01G283500 chr5B 89.634 164 10 5 108 271 105756185 105756341 4.250000e-48 202.0
62 TraesCS6B01G283500 chr5B 87.500 168 15 6 106 273 106354658 106354497 3.310000e-44 189.0
63 TraesCS6B01G283500 chr3D 93.763 1443 70 10 353 1781 576579536 576578100 0.000000e+00 2148.0
64 TraesCS6B01G283500 chr3D 92.581 1240 67 8 341 1567 580656345 580657572 0.000000e+00 1757.0
65 TraesCS6B01G283500 chr3D 89.950 398 25 9 354 740 515671975 515672368 1.350000e-137 499.0
66 TraesCS6B01G283500 chr3D 93.691 317 20 0 2206 2522 576576212 576575896 2.270000e-130 475.0
67 TraesCS6B01G283500 chr3D 81.481 189 25 9 89 274 2253483 2253302 2.020000e-31 147.0
68 TraesCS6B01G283500 chr3D 80.874 183 24 5 92 273 231161742 231161570 1.570000e-27 134.0
69 TraesCS6B01G283500 chr5A 89.736 341 20 8 353 682 655728954 655729290 3.000000e-114 422.0
70 TraesCS6B01G283500 chr5A 88.563 341 24 8 353 682 655800047 655800383 1.410000e-107 399.0
71 TraesCS6B01G283500 chr5A 87.683 341 26 9 353 682 655646392 655646727 1.420000e-102 383.0
72 TraesCS6B01G283500 chr5A 82.734 278 34 11 1 272 404664799 404665068 4.190000e-58 235.0
73 TraesCS6B01G283500 chr5A 84.043 188 20 9 93 273 338409852 338410036 3.340000e-39 172.0
74 TraesCS6B01G283500 chr5A 83.516 182 20 9 95 271 624753090 624753266 7.220000e-36 161.0
75 TraesCS6B01G283500 chr4B 90.391 281 25 2 353 633 554219909 554220187 3.960000e-98 368.0
76 TraesCS6B01G283500 chr4B 87.329 292 12 10 1 273 436261598 436261313 6.770000e-81 311.0
77 TraesCS6B01G283500 chr4B 83.158 190 23 7 90 272 242718651 242718838 5.580000e-37 165.0
78 TraesCS6B01G283500 chr3B 85.811 296 14 11 1 272 741431653 741431944 3.170000e-74 289.0
79 TraesCS6B01G283500 chr3B 90.674 193 11 3 80 271 16836340 16836154 1.500000e-62 250.0
80 TraesCS6B01G283500 chr3B 89.175 194 15 5 80 273 539563880 539563693 1.170000e-58 237.0
81 TraesCS6B01G283500 chr3B 82.432 296 23 15 1 273 466660491 466660780 5.430000e-57 231.0
82 TraesCS6B01G283500 chr3B 89.071 183 13 5 92 272 254847583 254847760 1.170000e-53 220.0
83 TraesCS6B01G283500 chr3B 95.312 64 3 0 1 64 16836687 16836624 4.440000e-18 102.0
84 TraesCS6B01G283500 chr1B 93.000 200 7 3 80 277 573413411 573413217 4.110000e-73 285.0
85 TraesCS6B01G283500 chr1B 84.512 297 18 10 1 273 7335756 7336048 4.140000e-68 268.0
86 TraesCS6B01G283500 chr1B 83.217 286 30 16 1 272 161379874 161379593 1.940000e-61 246.0
87 TraesCS6B01G283500 chr1B 81.145 297 26 16 1 273 130105834 130106124 7.070000e-51 211.0
88 TraesCS6B01G283500 chr1B 87.135 171 16 5 106 273 6578746 6578913 3.310000e-44 189.0
89 TraesCS6B01G283500 chr1B 87.059 170 16 5 105 271 562470704 562470538 1.190000e-43 187.0
90 TraesCS6B01G283500 chr4A 86.705 173 13 7 105 271 651086437 651086605 1.540000e-42 183.0
91 TraesCS6B01G283500 chr4A 83.770 191 22 9 86 273 512026073 512026257 3.340000e-39 172.0
92 TraesCS6B01G283500 chr4A 100.000 27 0 0 1 27 436436890 436436916 1.600000e-02 51.0
93 TraesCS6B01G283500 chr1A 79.667 300 25 21 4 272 513590144 513589850 1.540000e-42 183.0
94 TraesCS6B01G283500 chr1A 83.436 163 13 12 112 271 492136526 492136677 3.380000e-29 139.0
95 TraesCS6B01G283500 chr1A 83.226 155 17 8 118 271 269576126 269575980 1.570000e-27 134.0
96 TraesCS6B01G283500 chr6A 79.522 293 29 19 1 268 457611361 457611075 1.990000e-41 180.0
97 TraesCS6B01G283500 chr6A 82.812 192 23 9 95 281 609673185 609673371 2.010000e-36 163.0
98 TraesCS6B01G283500 chr6A 77.517 298 36 20 4 275 161148984 161148692 1.560000e-32 150.0
99 TraesCS6B01G283500 chr6A 97.674 43 1 0 1 43 102139846 102139804 9.680000e-10 75.0
100 TraesCS6B01G283500 chr5D 86.585 164 14 8 112 271 459140553 459140712 9.270000e-40 174.0
101 TraesCS6B01G283500 chr5D 85.629 167 13 10 117 281 110346009 110346166 5.580000e-37 165.0
102 TraesCS6B01G283500 chr5D 82.162 185 20 12 95 272 484783402 484783580 2.020000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G283500 chr6B 511710588 511713109 2521 True 4658.0 4658 100.000 1 2522 1 chr6B.!!$R3 2521
1 TraesCS6B01G283500 chr2B 441885053 441887240 2187 False 3164.0 3164 92.903 348 2522 1 chr2B.!!$F1 2174
2 TraesCS6B01G283500 chr2B 142988546 142989455 909 True 1184.0 1184 90.183 352 1270 1 chr2B.!!$R1 918
3 TraesCS6B01G283500 chr4D 481887026 481889234 2208 False 3083.0 3083 92.179 356 2522 1 chr4D.!!$F2 2166
4 TraesCS6B01G283500 chr4D 119367843 119369760 1917 True 2809.0 2809 93.202 354 2263 1 chr4D.!!$R2 1909
5 TraesCS6B01G283500 chr4D 486563882 486565784 1902 True 2752.0 2752 92.950 353 2239 1 chr4D.!!$R4 1886
6 TraesCS6B01G283500 chr1D 430108487 430110704 2217 False 3022.0 3022 91.640 353 2522 1 chr1D.!!$F10 2169
7 TraesCS6B01G283500 chr1D 278100264 278102468 2204 True 3018.0 3018 91.712 355 2522 1 chr1D.!!$R3 2167
8 TraesCS6B01G283500 chr1D 250223367 250225564 2197 False 2915.0 2915 90.942 355 2512 1 chr1D.!!$F5 2157
9 TraesCS6B01G283500 chr1D 303344960 303346869 1909 False 2837.0 2837 93.580 356 2255 1 chr1D.!!$F7 1899
10 TraesCS6B01G283500 chr1D 424634905 424637079 2174 False 2826.0 2826 90.299 354 2522 1 chr1D.!!$F9 2168
11 TraesCS6B01G283500 chr1D 139134155 139135263 1108 True 1487.0 1487 90.901 355 1473 1 chr1D.!!$R1 1118
12 TraesCS6B01G283500 chr1D 446540375 446541368 993 False 1358.0 1358 91.434 354 1345 1 chr1D.!!$F11 991
13 TraesCS6B01G283500 chr1D 441744425 441745115 690 True 909.0 909 90.661 354 1037 1 chr1D.!!$R5 683
14 TraesCS6B01G283500 chr6D 325416669 325418870 2201 True 2983.0 2983 91.434 354 2522 1 chr6D.!!$R5 2168
15 TraesCS6B01G283500 chr6D 447880262 447882347 2085 True 2760.0 2760 90.836 355 2420 1 chr6D.!!$R7 2065
16 TraesCS6B01G283500 chr6D 347437986 347439908 1922 True 2732.0 2732 92.451 352 2263 1 chr6D.!!$R6 1911
17 TraesCS6B01G283500 chr6D 421840966 421842256 1290 False 1860.0 1860 92.901 353 1627 1 chr6D.!!$F3 1274
18 TraesCS6B01G283500 chr6D 41923488 41924608 1120 True 1609.0 1609 92.668 354 1473 1 chr6D.!!$R1 1119
19 TraesCS6B01G283500 chr2D 644013309 644015512 2203 True 2907.0 2907 90.769 354 2522 1 chr2D.!!$R3 2168
20 TraesCS6B01G283500 chr2D 500665309 500667213 1904 True 2719.0 2719 92.499 354 2263 1 chr2D.!!$R2 1909
21 TraesCS6B01G283500 chr2D 50138400 50139065 665 True 905.0 905 91.505 355 1011 1 chr2D.!!$R1 656
22 TraesCS6B01G283500 chr7D 85019321 85021227 1906 False 2846.0 2846 93.691 354 2255 1 chr7D.!!$F2 1901
23 TraesCS6B01G283500 chr7D 56936786 56937957 1171 False 1596.0 1596 91.297 353 1533 1 chr7D.!!$F1 1180
24 TraesCS6B01G283500 chr7B 442357638 442359548 1910 False 2839.0 2839 93.584 355 2255 1 chr7B.!!$F1 1900
25 TraesCS6B01G283500 chr7B 8457464 8457989 525 True 710.0 710 91.635 2016 2522 1 chr7B.!!$R2 506
26 TraesCS6B01G283500 chrUn 105334056 105335964 1908 True 2795.0 2795 93.184 355 2258 1 chrUn.!!$R2 1903
27 TraesCS6B01G283500 chrUn 108802910 108803720 810 False 1064.0 1064 90.511 351 1160 1 chrUn.!!$F1 809
28 TraesCS6B01G283500 chr5B 615399284 615401475 2191 True 2734.0 2734 89.428 356 2522 1 chr5B.!!$R3 2166
29 TraesCS6B01G283500 chr5B 635765310 635767314 2004 True 2551.0 2551 89.955 356 2325 1 chr5B.!!$R4 1969
30 TraesCS6B01G283500 chr5B 128208506 128209013 507 True 632.0 632 89.060 353 871 1 chr5B.!!$R2 518
31 TraesCS6B01G283500 chr3D 580656345 580657572 1227 False 1757.0 1757 92.581 341 1567 1 chr3D.!!$F2 1226
32 TraesCS6B01G283500 chr3D 576575896 576579536 3640 True 1311.5 2148 93.727 353 2522 2 chr3D.!!$R3 2169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.109964 GTGTTTGTGCGTGTGTGTGT 60.11 50.0 0.0 0.0 0.0 3.72 F
200 201 0.109964 GTTTGTGCGTGTGTGTGTGT 60.11 50.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1259 1350 1.004745 ACCTCTGGTTATGGCCAACAG 59.995 52.381 10.96 16.16 38.18 3.16 R
2090 3615 1.350684 TGGCCAGAGCTAACAACATCA 59.649 47.619 0.00 0.00 39.73 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.296265 GGGACGTCATCAACACCC 57.704 61.111 18.91 3.08 37.10 4.61
22 23 1.677552 GGGACGTCATCAACACCCT 59.322 57.895 18.91 0.00 39.58 4.34
23 24 0.391263 GGGACGTCATCAACACCCTC 60.391 60.000 18.91 0.00 39.58 4.30
24 25 0.391263 GGACGTCATCAACACCCTCC 60.391 60.000 18.91 0.00 0.00 4.30
25 26 0.608640 GACGTCATCAACACCCTCCT 59.391 55.000 11.55 0.00 0.00 3.69
26 27 0.608640 ACGTCATCAACACCCTCCTC 59.391 55.000 0.00 0.00 0.00 3.71
27 28 0.608130 CGTCATCAACACCCTCCTCA 59.392 55.000 0.00 0.00 0.00 3.86
28 29 1.673033 CGTCATCAACACCCTCCTCAC 60.673 57.143 0.00 0.00 0.00 3.51
29 30 0.984230 TCATCAACACCCTCCTCACC 59.016 55.000 0.00 0.00 0.00 4.02
30 31 0.391661 CATCAACACCCTCCTCACCG 60.392 60.000 0.00 0.00 0.00 4.94
31 32 0.544357 ATCAACACCCTCCTCACCGA 60.544 55.000 0.00 0.00 0.00 4.69
32 33 1.004918 CAACACCCTCCTCACCGAC 60.005 63.158 0.00 0.00 0.00 4.79
33 34 2.214920 AACACCCTCCTCACCGACC 61.215 63.158 0.00 0.00 0.00 4.79
34 35 2.283966 CACCCTCCTCACCGACCT 60.284 66.667 0.00 0.00 0.00 3.85
35 36 1.000019 CACCCTCCTCACCGACCTA 60.000 63.158 0.00 0.00 0.00 3.08
36 37 1.000107 ACCCTCCTCACCGACCTAC 60.000 63.158 0.00 0.00 0.00 3.18
37 38 2.119655 CCCTCCTCACCGACCTACG 61.120 68.421 0.00 0.00 42.18 3.51
38 39 1.077930 CCTCCTCACCGACCTACGA 60.078 63.158 0.00 0.00 45.77 3.43
39 40 0.465824 CCTCCTCACCGACCTACGAT 60.466 60.000 0.00 0.00 45.77 3.73
40 41 0.945813 CTCCTCACCGACCTACGATC 59.054 60.000 0.00 0.00 45.77 3.69
41 42 0.812811 TCCTCACCGACCTACGATCG 60.813 60.000 14.88 14.88 45.77 3.69
42 43 1.009900 CTCACCGACCTACGATCGC 60.010 63.158 16.60 0.00 45.77 4.58
43 44 1.437772 CTCACCGACCTACGATCGCT 61.438 60.000 16.60 5.20 45.77 4.93
44 45 1.009900 CACCGACCTACGATCGCTC 60.010 63.158 16.60 3.87 45.77 5.03
54 55 4.577246 GATCGCTCGCCTTCCGCT 62.577 66.667 0.00 0.00 36.73 5.52
55 56 4.148825 ATCGCTCGCCTTCCGCTT 62.149 61.111 0.00 0.00 36.73 4.68
69 70 4.858680 GCTTGGCGCCTCCCCTAC 62.859 72.222 29.70 6.20 0.00 3.18
70 71 4.176752 CTTGGCGCCTCCCCTACC 62.177 72.222 29.70 0.00 0.00 3.18
71 72 4.733725 TTGGCGCCTCCCCTACCT 62.734 66.667 29.70 0.00 0.00 3.08
76 77 4.902258 GCCTCCCCTACCTCCCCC 62.902 77.778 0.00 0.00 0.00 5.40
99 100 2.124901 CACCCCGTGTGTGTGTGT 60.125 61.111 0.00 0.00 40.26 3.72
100 101 2.124901 ACCCCGTGTGTGTGTGTG 60.125 61.111 0.00 0.00 0.00 3.82
101 102 3.582120 CCCCGTGTGTGTGTGTGC 61.582 66.667 0.00 0.00 0.00 4.57
102 103 3.582120 CCCGTGTGTGTGTGTGCC 61.582 66.667 0.00 0.00 0.00 5.01
103 104 2.513666 CCGTGTGTGTGTGTGCCT 60.514 61.111 0.00 0.00 0.00 4.75
104 105 2.112198 CCGTGTGTGTGTGTGCCTT 61.112 57.895 0.00 0.00 0.00 4.35
105 106 1.653094 CCGTGTGTGTGTGTGCCTTT 61.653 55.000 0.00 0.00 0.00 3.11
106 107 0.170116 CGTGTGTGTGTGTGCCTTTT 59.830 50.000 0.00 0.00 0.00 2.27
107 108 1.402194 CGTGTGTGTGTGTGCCTTTTT 60.402 47.619 0.00 0.00 0.00 1.94
108 109 2.258755 GTGTGTGTGTGTGCCTTTTTC 58.741 47.619 0.00 0.00 0.00 2.29
109 110 2.094752 GTGTGTGTGTGTGCCTTTTTCT 60.095 45.455 0.00 0.00 0.00 2.52
110 111 2.094803 TGTGTGTGTGTGCCTTTTTCTG 60.095 45.455 0.00 0.00 0.00 3.02
111 112 2.094752 GTGTGTGTGTGCCTTTTTCTGT 60.095 45.455 0.00 0.00 0.00 3.41
112 113 2.560542 TGTGTGTGTGCCTTTTTCTGTT 59.439 40.909 0.00 0.00 0.00 3.16
113 114 3.179048 GTGTGTGTGCCTTTTTCTGTTC 58.821 45.455 0.00 0.00 0.00 3.18
114 115 3.088532 TGTGTGTGCCTTTTTCTGTTCT 58.911 40.909 0.00 0.00 0.00 3.01
115 116 3.128589 TGTGTGTGCCTTTTTCTGTTCTC 59.871 43.478 0.00 0.00 0.00 2.87
116 117 3.128589 GTGTGTGCCTTTTTCTGTTCTCA 59.871 43.478 0.00 0.00 0.00 3.27
117 118 3.378112 TGTGTGCCTTTTTCTGTTCTCAG 59.622 43.478 0.00 0.00 42.54 3.35
118 119 2.951642 TGTGCCTTTTTCTGTTCTCAGG 59.048 45.455 0.00 0.00 41.59 3.86
119 120 2.294512 GTGCCTTTTTCTGTTCTCAGGG 59.705 50.000 0.00 0.00 41.59 4.45
120 121 1.270826 GCCTTTTTCTGTTCTCAGGGC 59.729 52.381 0.00 0.00 41.59 5.19
121 122 2.868899 CCTTTTTCTGTTCTCAGGGCT 58.131 47.619 0.00 0.00 41.59 5.19
122 123 3.225940 CCTTTTTCTGTTCTCAGGGCTT 58.774 45.455 0.00 0.00 41.59 4.35
123 124 3.254411 CCTTTTTCTGTTCTCAGGGCTTC 59.746 47.826 0.00 0.00 41.59 3.86
124 125 3.864789 TTTTCTGTTCTCAGGGCTTCT 57.135 42.857 0.00 0.00 41.59 2.85
125 126 3.864789 TTTCTGTTCTCAGGGCTTCTT 57.135 42.857 0.00 0.00 41.59 2.52
126 127 2.847327 TCTGTTCTCAGGGCTTCTTG 57.153 50.000 0.00 0.00 41.59 3.02
127 128 2.329267 TCTGTTCTCAGGGCTTCTTGA 58.671 47.619 0.00 0.00 41.59 3.02
128 129 2.301296 TCTGTTCTCAGGGCTTCTTGAG 59.699 50.000 0.00 0.00 41.59 3.02
129 130 2.038295 CTGTTCTCAGGGCTTCTTGAGT 59.962 50.000 5.62 0.00 37.97 3.41
130 131 2.439507 TGTTCTCAGGGCTTCTTGAGTT 59.560 45.455 5.62 0.00 0.00 3.01
131 132 2.810852 GTTCTCAGGGCTTCTTGAGTTG 59.189 50.000 5.62 0.00 0.00 3.16
132 133 2.050144 TCTCAGGGCTTCTTGAGTTGT 58.950 47.619 5.62 0.00 0.00 3.32
133 134 2.149578 CTCAGGGCTTCTTGAGTTGTG 58.850 52.381 0.00 0.00 0.00 3.33
134 135 0.595095 CAGGGCTTCTTGAGTTGTGC 59.405 55.000 0.00 0.00 0.00 4.57
135 136 0.538287 AGGGCTTCTTGAGTTGTGCC 60.538 55.000 0.00 0.00 39.61 5.01
136 137 1.959848 GGCTTCTTGAGTTGTGCCC 59.040 57.895 0.00 0.00 34.81 5.36
137 138 0.538287 GGCTTCTTGAGTTGTGCCCT 60.538 55.000 0.00 0.00 34.81 5.19
138 139 0.877743 GCTTCTTGAGTTGTGCCCTC 59.122 55.000 0.00 0.00 0.00 4.30
139 140 1.815408 GCTTCTTGAGTTGTGCCCTCA 60.815 52.381 0.00 0.00 37.18 3.86
140 141 2.149578 CTTCTTGAGTTGTGCCCTCAG 58.850 52.381 0.00 0.00 39.91 3.35
141 142 0.250467 TCTTGAGTTGTGCCCTCAGC 60.250 55.000 0.00 0.00 39.91 4.26
151 152 3.596362 GCCCTCAGCATTAACCCTT 57.404 52.632 0.00 0.00 42.97 3.95
152 153 1.852633 GCCCTCAGCATTAACCCTTT 58.147 50.000 0.00 0.00 42.97 3.11
153 154 2.179427 GCCCTCAGCATTAACCCTTTT 58.821 47.619 0.00 0.00 42.97 2.27
154 155 2.094026 GCCCTCAGCATTAACCCTTTTG 60.094 50.000 0.00 0.00 42.97 2.44
155 156 2.497273 CCCTCAGCATTAACCCTTTTGG 59.503 50.000 0.00 0.00 41.37 3.28
156 157 3.430453 CCTCAGCATTAACCCTTTTGGA 58.570 45.455 0.00 0.00 44.07 3.53
157 158 4.026052 CCTCAGCATTAACCCTTTTGGAT 58.974 43.478 0.00 0.00 44.07 3.41
158 159 4.098501 CCTCAGCATTAACCCTTTTGGATC 59.901 45.833 0.00 0.00 44.07 3.36
159 160 4.023291 TCAGCATTAACCCTTTTGGATCC 58.977 43.478 4.20 4.20 44.07 3.36
160 161 4.026052 CAGCATTAACCCTTTTGGATCCT 58.974 43.478 14.23 0.00 44.07 3.24
161 162 4.026052 AGCATTAACCCTTTTGGATCCTG 58.974 43.478 14.23 0.00 44.07 3.86
162 163 3.769300 GCATTAACCCTTTTGGATCCTGT 59.231 43.478 14.23 0.00 44.07 4.00
163 164 4.381932 GCATTAACCCTTTTGGATCCTGTG 60.382 45.833 14.23 0.61 44.07 3.66
164 165 4.463050 TTAACCCTTTTGGATCCTGTGT 57.537 40.909 14.23 0.00 44.07 3.72
165 166 2.292828 ACCCTTTTGGATCCTGTGTG 57.707 50.000 14.23 0.00 44.07 3.82
166 167 1.499007 ACCCTTTTGGATCCTGTGTGT 59.501 47.619 14.23 0.48 44.07 3.72
167 168 2.714250 ACCCTTTTGGATCCTGTGTGTA 59.286 45.455 14.23 0.00 44.07 2.90
168 169 3.081804 CCCTTTTGGATCCTGTGTGTAC 58.918 50.000 14.23 0.00 44.07 2.90
169 170 3.244911 CCCTTTTGGATCCTGTGTGTACT 60.245 47.826 14.23 0.00 44.07 2.73
170 171 3.753272 CCTTTTGGATCCTGTGTGTACTG 59.247 47.826 14.23 0.00 44.07 2.74
171 172 4.504864 CCTTTTGGATCCTGTGTGTACTGA 60.505 45.833 14.23 0.00 44.07 3.41
172 173 3.961480 TTGGATCCTGTGTGTACTGAG 57.039 47.619 14.23 0.00 0.00 3.35
173 174 3.169512 TGGATCCTGTGTGTACTGAGA 57.830 47.619 14.23 0.00 0.00 3.27
174 175 2.826128 TGGATCCTGTGTGTACTGAGAC 59.174 50.000 14.23 0.00 0.00 3.36
175 176 3.093057 GGATCCTGTGTGTACTGAGACT 58.907 50.000 3.84 0.00 0.00 3.24
176 177 3.511934 GGATCCTGTGTGTACTGAGACTT 59.488 47.826 3.84 0.00 0.00 3.01
177 178 4.705507 GGATCCTGTGTGTACTGAGACTTA 59.294 45.833 3.84 0.00 0.00 2.24
178 179 5.361285 GGATCCTGTGTGTACTGAGACTTAT 59.639 44.000 3.84 0.00 0.00 1.73
179 180 5.644977 TCCTGTGTGTACTGAGACTTATG 57.355 43.478 0.00 0.00 0.00 1.90
180 181 5.077564 TCCTGTGTGTACTGAGACTTATGT 58.922 41.667 0.00 0.00 0.00 2.29
181 182 5.048013 TCCTGTGTGTACTGAGACTTATGTG 60.048 44.000 0.00 0.00 0.00 3.21
182 183 5.279006 CCTGTGTGTACTGAGACTTATGTGT 60.279 44.000 0.00 0.00 0.00 3.72
183 184 6.156748 TGTGTGTACTGAGACTTATGTGTT 57.843 37.500 0.00 0.00 0.00 3.32
184 185 6.578944 TGTGTGTACTGAGACTTATGTGTTT 58.421 36.000 0.00 0.00 0.00 2.83
185 186 6.478673 TGTGTGTACTGAGACTTATGTGTTTG 59.521 38.462 0.00 0.00 0.00 2.93
186 187 6.479001 GTGTGTACTGAGACTTATGTGTTTGT 59.521 38.462 0.00 0.00 0.00 2.83
187 188 6.478673 TGTGTACTGAGACTTATGTGTTTGTG 59.521 38.462 0.00 0.00 0.00 3.33
188 189 5.465390 TGTACTGAGACTTATGTGTTTGTGC 59.535 40.000 0.00 0.00 0.00 4.57
189 190 3.494626 ACTGAGACTTATGTGTTTGTGCG 59.505 43.478 0.00 0.00 0.00 5.34
190 191 3.462982 TGAGACTTATGTGTTTGTGCGT 58.537 40.909 0.00 0.00 0.00 5.24
191 192 3.247411 TGAGACTTATGTGTTTGTGCGTG 59.753 43.478 0.00 0.00 0.00 5.34
192 193 3.202906 AGACTTATGTGTTTGTGCGTGT 58.797 40.909 0.00 0.00 0.00 4.49
193 194 3.002246 AGACTTATGTGTTTGTGCGTGTG 59.998 43.478 0.00 0.00 0.00 3.82
194 195 2.680841 ACTTATGTGTTTGTGCGTGTGT 59.319 40.909 0.00 0.00 0.00 3.72
195 196 2.746623 TATGTGTTTGTGCGTGTGTG 57.253 45.000 0.00 0.00 0.00 3.82
196 197 0.808125 ATGTGTTTGTGCGTGTGTGT 59.192 45.000 0.00 0.00 0.00 3.72
197 198 0.110010 TGTGTTTGTGCGTGTGTGTG 60.110 50.000 0.00 0.00 0.00 3.82
198 199 0.109964 GTGTTTGTGCGTGTGTGTGT 60.110 50.000 0.00 0.00 0.00 3.72
199 200 0.110010 TGTTTGTGCGTGTGTGTGTG 60.110 50.000 0.00 0.00 0.00 3.82
200 201 0.109964 GTTTGTGCGTGTGTGTGTGT 60.110 50.000 0.00 0.00 0.00 3.72
201 202 0.110010 TTTGTGCGTGTGTGTGTGTG 60.110 50.000 0.00 0.00 0.00 3.82
202 203 0.951040 TTGTGCGTGTGTGTGTGTGA 60.951 50.000 0.00 0.00 0.00 3.58
203 204 0.951040 TGTGCGTGTGTGTGTGTGAA 60.951 50.000 0.00 0.00 0.00 3.18
204 205 0.520412 GTGCGTGTGTGTGTGTGAAC 60.520 55.000 0.00 0.00 0.00 3.18
205 206 1.061887 GCGTGTGTGTGTGTGAACC 59.938 57.895 0.00 0.00 0.00 3.62
206 207 1.366111 GCGTGTGTGTGTGTGAACCT 61.366 55.000 0.00 0.00 0.00 3.50
207 208 1.929230 CGTGTGTGTGTGTGAACCTA 58.071 50.000 0.00 0.00 0.00 3.08
208 209 2.479837 CGTGTGTGTGTGTGAACCTAT 58.520 47.619 0.00 0.00 0.00 2.57
209 210 3.644823 CGTGTGTGTGTGTGAACCTATA 58.355 45.455 0.00 0.00 0.00 1.31
210 211 4.242475 CGTGTGTGTGTGTGAACCTATAT 58.758 43.478 0.00 0.00 0.00 0.86
211 212 4.091365 CGTGTGTGTGTGTGAACCTATATG 59.909 45.833 0.00 0.00 0.00 1.78
212 213 4.391830 GTGTGTGTGTGTGAACCTATATGG 59.608 45.833 0.00 0.00 42.93 2.74
213 214 4.284746 TGTGTGTGTGTGAACCTATATGGA 59.715 41.667 0.00 0.00 39.71 3.41
214 215 5.221742 TGTGTGTGTGTGAACCTATATGGAA 60.222 40.000 0.00 0.00 39.71 3.53
215 216 5.880332 GTGTGTGTGTGAACCTATATGGAAT 59.120 40.000 0.00 0.00 39.71 3.01
216 217 5.879777 TGTGTGTGTGAACCTATATGGAATG 59.120 40.000 0.00 0.00 39.71 2.67
217 218 5.880332 GTGTGTGTGAACCTATATGGAATGT 59.120 40.000 0.00 0.00 39.71 2.71
218 219 6.374333 GTGTGTGTGAACCTATATGGAATGTT 59.626 38.462 0.00 0.00 39.71 2.71
219 220 6.374053 TGTGTGTGAACCTATATGGAATGTTG 59.626 38.462 0.00 0.00 39.71 3.33
220 221 5.885352 TGTGTGAACCTATATGGAATGTTGG 59.115 40.000 0.00 0.00 36.48 3.77
221 222 4.887071 TGTGAACCTATATGGAATGTTGGC 59.113 41.667 0.00 0.00 33.91 4.52
222 223 5.133221 GTGAACCTATATGGAATGTTGGCT 58.867 41.667 0.00 0.00 33.91 4.75
223 224 5.594317 GTGAACCTATATGGAATGTTGGCTT 59.406 40.000 0.00 0.00 33.91 4.35
224 225 5.593909 TGAACCTATATGGAATGTTGGCTTG 59.406 40.000 0.00 0.00 33.91 4.01
225 226 4.473444 ACCTATATGGAATGTTGGCTTGG 58.527 43.478 0.00 0.00 33.91 3.61
226 227 3.828451 CCTATATGGAATGTTGGCTTGGG 59.172 47.826 0.00 0.00 38.35 4.12
227 228 1.484038 TATGGAATGTTGGCTTGGGC 58.516 50.000 0.00 0.00 37.82 5.36
228 229 0.544833 ATGGAATGTTGGCTTGGGCA 60.545 50.000 0.00 0.00 40.87 5.36
229 230 1.186917 TGGAATGTTGGCTTGGGCAG 61.187 55.000 0.00 0.00 39.75 4.85
230 231 1.187567 GGAATGTTGGCTTGGGCAGT 61.188 55.000 0.00 0.00 39.75 4.40
231 232 0.681175 GAATGTTGGCTTGGGCAGTT 59.319 50.000 0.00 0.00 39.75 3.16
232 233 0.393820 AATGTTGGCTTGGGCAGTTG 59.606 50.000 0.00 0.00 39.75 3.16
233 234 2.029518 GTTGGCTTGGGCAGTTGC 59.970 61.111 0.00 0.00 39.75 4.17
234 235 2.123338 TTGGCTTGGGCAGTTGCT 60.123 55.556 3.88 0.00 39.75 3.91
235 236 1.761667 TTGGCTTGGGCAGTTGCTT 60.762 52.632 3.88 0.00 39.75 3.91
236 237 1.336632 TTGGCTTGGGCAGTTGCTTT 61.337 50.000 3.88 0.00 39.75 3.51
237 238 0.468958 TGGCTTGGGCAGTTGCTTTA 60.469 50.000 3.88 0.00 41.70 1.85
238 239 0.897621 GGCTTGGGCAGTTGCTTTAT 59.102 50.000 3.88 0.00 41.70 1.40
239 240 2.099405 GGCTTGGGCAGTTGCTTTATA 58.901 47.619 3.88 0.00 41.70 0.98
240 241 2.495669 GGCTTGGGCAGTTGCTTTATAA 59.504 45.455 3.88 0.00 41.70 0.98
241 242 3.132824 GGCTTGGGCAGTTGCTTTATAAT 59.867 43.478 3.88 0.00 41.70 1.28
242 243 4.340950 GGCTTGGGCAGTTGCTTTATAATA 59.659 41.667 3.88 0.00 41.70 0.98
243 244 5.011023 GGCTTGGGCAGTTGCTTTATAATAT 59.989 40.000 3.88 0.00 41.70 1.28
244 245 6.208599 GGCTTGGGCAGTTGCTTTATAATATA 59.791 38.462 3.88 0.00 41.70 0.86
245 246 7.255801 GGCTTGGGCAGTTGCTTTATAATATAA 60.256 37.037 3.88 0.00 41.70 0.98
246 247 8.141268 GCTTGGGCAGTTGCTTTATAATATAAA 58.859 33.333 3.88 5.46 41.70 1.40
247 248 9.683069 CTTGGGCAGTTGCTTTATAATATAAAG 57.317 33.333 22.11 22.11 41.70 1.85
254 255 4.905269 GCTTTATAATATAAAGCGGGGCG 58.095 43.478 30.20 10.34 46.31 6.13
255 256 4.632688 GCTTTATAATATAAAGCGGGGCGA 59.367 41.667 30.20 0.05 46.31 5.54
256 257 5.122711 GCTTTATAATATAAAGCGGGGCGAA 59.877 40.000 30.20 0.00 46.31 4.70
257 258 6.348704 GCTTTATAATATAAAGCGGGGCGAAA 60.349 38.462 30.20 0.57 46.31 3.46
258 259 6.730960 TTATAATATAAAGCGGGGCGAAAG 57.269 37.500 0.00 0.00 0.00 2.62
275 276 5.043189 CGAAAGCCTTTTTCGGTAAATCT 57.957 39.130 12.72 0.00 45.17 2.40
276 277 4.851558 CGAAAGCCTTTTTCGGTAAATCTG 59.148 41.667 12.72 0.00 45.17 2.90
277 278 4.783764 AAGCCTTTTTCGGTAAATCTGG 57.216 40.909 0.00 0.00 0.00 3.86
278 279 2.492088 AGCCTTTTTCGGTAAATCTGGC 59.508 45.455 0.00 0.00 37.30 4.85
279 280 2.492088 GCCTTTTTCGGTAAATCTGGCT 59.508 45.455 0.00 0.00 35.71 4.75
280 281 3.692593 GCCTTTTTCGGTAAATCTGGCTA 59.307 43.478 0.00 0.00 35.71 3.93
281 282 4.157105 GCCTTTTTCGGTAAATCTGGCTAA 59.843 41.667 0.00 0.00 35.71 3.09
282 283 5.676331 GCCTTTTTCGGTAAATCTGGCTAAG 60.676 44.000 0.00 0.00 35.71 2.18
283 284 4.957759 TTTTCGGTAAATCTGGCTAAGC 57.042 40.909 0.00 0.00 0.00 3.09
284 285 3.906720 TTCGGTAAATCTGGCTAAGCT 57.093 42.857 0.00 0.00 0.00 3.74
285 286 3.179443 TCGGTAAATCTGGCTAAGCTG 57.821 47.619 0.00 0.00 0.00 4.24
286 287 1.599542 CGGTAAATCTGGCTAAGCTGC 59.400 52.381 0.00 0.00 0.00 5.25
287 288 2.743183 CGGTAAATCTGGCTAAGCTGCT 60.743 50.000 0.00 0.00 0.00 4.24
288 289 2.875317 GGTAAATCTGGCTAAGCTGCTC 59.125 50.000 1.00 0.00 0.00 4.26
289 290 2.049888 AAATCTGGCTAAGCTGCTCC 57.950 50.000 1.00 0.00 0.00 4.70
290 291 0.914644 AATCTGGCTAAGCTGCTCCA 59.085 50.000 1.00 5.43 0.00 3.86
291 292 0.179936 ATCTGGCTAAGCTGCTCCAC 59.820 55.000 1.00 0.00 0.00 4.02
292 293 1.451028 CTGGCTAAGCTGCTCCACC 60.451 63.158 1.00 5.20 0.00 4.61
293 294 1.908340 CTGGCTAAGCTGCTCCACCT 61.908 60.000 1.00 0.00 0.00 4.00
294 295 0.617535 TGGCTAAGCTGCTCCACCTA 60.618 55.000 1.00 0.00 0.00 3.08
295 296 0.761802 GGCTAAGCTGCTCCACCTAT 59.238 55.000 1.00 0.00 0.00 2.57
296 297 1.971357 GGCTAAGCTGCTCCACCTATA 59.029 52.381 1.00 0.00 0.00 1.31
297 298 2.569404 GGCTAAGCTGCTCCACCTATAT 59.431 50.000 1.00 0.00 0.00 0.86
298 299 3.594134 GCTAAGCTGCTCCACCTATATG 58.406 50.000 1.00 0.00 0.00 1.78
299 300 3.259374 GCTAAGCTGCTCCACCTATATGA 59.741 47.826 1.00 0.00 0.00 2.15
300 301 3.760580 AAGCTGCTCCACCTATATGAC 57.239 47.619 1.00 0.00 0.00 3.06
301 302 1.974236 AGCTGCTCCACCTATATGACC 59.026 52.381 0.00 0.00 0.00 4.02
302 303 1.002544 GCTGCTCCACCTATATGACCC 59.997 57.143 0.00 0.00 0.00 4.46
303 304 2.329267 CTGCTCCACCTATATGACCCA 58.671 52.381 0.00 0.00 0.00 4.51
304 305 2.037772 CTGCTCCACCTATATGACCCAC 59.962 54.545 0.00 0.00 0.00 4.61
305 306 2.047061 GCTCCACCTATATGACCCACA 58.953 52.381 0.00 0.00 0.00 4.17
306 307 2.224305 GCTCCACCTATATGACCCACAC 60.224 54.545 0.00 0.00 0.00 3.82
307 308 2.368875 CTCCACCTATATGACCCACACC 59.631 54.545 0.00 0.00 0.00 4.16
308 309 2.123589 CCACCTATATGACCCACACCA 58.876 52.381 0.00 0.00 0.00 4.17
309 310 2.104792 CCACCTATATGACCCACACCAG 59.895 54.545 0.00 0.00 0.00 4.00
310 311 1.768870 ACCTATATGACCCACACCAGC 59.231 52.381 0.00 0.00 0.00 4.85
311 312 1.072331 CCTATATGACCCACACCAGCC 59.928 57.143 0.00 0.00 0.00 4.85
312 313 2.050144 CTATATGACCCACACCAGCCT 58.950 52.381 0.00 0.00 0.00 4.58
313 314 0.839946 ATATGACCCACACCAGCCTC 59.160 55.000 0.00 0.00 0.00 4.70
314 315 0.546507 TATGACCCACACCAGCCTCA 60.547 55.000 0.00 0.00 0.00 3.86
315 316 1.210204 ATGACCCACACCAGCCTCAT 61.210 55.000 0.00 0.00 0.00 2.90
316 317 1.377725 GACCCACACCAGCCTCATG 60.378 63.158 0.00 0.00 0.00 3.07
317 318 2.044650 CCCACACCAGCCTCATGG 60.045 66.667 0.00 0.00 46.47 3.66
324 325 2.187073 CCAGCCTCATGGTTGAAGC 58.813 57.895 0.51 0.00 45.89 3.86
325 326 0.609957 CCAGCCTCATGGTTGAAGCA 60.610 55.000 0.00 0.00 45.89 3.91
326 327 1.250328 CAGCCTCATGGTTGAAGCAA 58.750 50.000 0.00 0.00 45.89 3.91
327 328 1.822990 CAGCCTCATGGTTGAAGCAAT 59.177 47.619 0.00 0.00 45.89 3.56
328 329 2.097825 AGCCTCATGGTTGAAGCAATC 58.902 47.619 0.00 0.00 41.03 2.67
329 330 1.202222 GCCTCATGGTTGAAGCAATCG 60.202 52.381 0.00 0.00 38.85 3.34
330 331 1.202222 CCTCATGGTTGAAGCAATCGC 60.202 52.381 0.00 0.00 38.99 4.58
349 350 2.414058 CTAGCCATCTAGCACAGACG 57.586 55.000 0.00 0.00 36.24 4.18
377 378 1.829970 TGTTTGGTTGCCCGCATCA 60.830 52.632 0.00 0.00 0.00 3.07
415 416 1.225704 GGGAAGGGAGAGGCATGTG 59.774 63.158 0.00 0.00 0.00 3.21
435 436 1.068588 GTTGGTTGCCTGGTTTTCCTC 59.931 52.381 0.00 0.00 41.38 3.71
699 734 2.543861 GGCGACTGCGATTTCAGATCTA 60.544 50.000 0.00 0.00 44.10 1.98
713 769 2.428530 CAGATCTATGCTATAGGCGGCA 59.571 50.000 13.08 0.00 45.43 5.69
714 770 2.692557 AGATCTATGCTATAGGCGGCAG 59.307 50.000 13.08 0.10 45.43 4.85
715 771 0.532573 TCTATGCTATAGGCGGCAGC 59.467 55.000 13.08 12.57 45.43 5.25
717 773 2.225791 TATGCTATAGGCGGCAGCGG 62.226 60.000 13.08 0.00 46.35 5.52
817 892 1.385773 TGCCATGGCTCCCCTATGA 60.386 57.895 35.53 11.01 42.51 2.15
838 913 3.209812 CCTCGTCTCCGATGCCGA 61.210 66.667 0.00 0.00 43.27 5.54
952 1033 1.402968 GACTAGGTTATGGACGCACGA 59.597 52.381 0.00 0.00 0.00 4.35
953 1034 2.029623 ACTAGGTTATGGACGCACGAT 58.970 47.619 0.00 0.00 0.00 3.73
1072 1161 3.389656 TGATCCGCTATGGTCCATTGTTA 59.610 43.478 10.33 0.00 39.52 2.41
1137 1228 1.512310 CAACGACGTCGAGGCTCTC 60.512 63.158 41.52 2.04 43.02 3.20
1244 1335 2.292267 CAGTGTTGAAGAGCAAGTGGT 58.708 47.619 0.00 0.00 37.12 4.16
1259 1350 1.098050 GTGGTCATGTTCCTCCATGC 58.902 55.000 10.06 0.00 41.60 4.06
1283 1374 1.707989 TGGCCATAACCAGAGGTTCAA 59.292 47.619 0.00 0.00 43.05 2.69
1335 1427 5.988865 TGGAGACCATCTCTAGGTACTTA 57.011 43.478 5.84 0.00 42.95 2.24
1405 1497 1.701847 GACCATATGGCCAGACTCCAT 59.298 52.381 22.18 0.00 45.60 3.41
1516 1611 4.697828 TGTTCAAGTTGAGCACTAACACAA 59.302 37.500 17.37 0.00 32.63 3.33
1635 1731 3.981071 AGCACTACACAAGCCAGAATA 57.019 42.857 0.00 0.00 0.00 1.75
1745 1841 0.461548 GCATGAGTCGACCTGATGGA 59.538 55.000 13.01 0.00 35.54 3.41
1802 3323 2.111878 GGCTATGCATGTCGGCCT 59.888 61.111 20.04 0.00 39.68 5.19
1821 3342 2.420129 CCTGGTATTCTTCCACCCTTCG 60.420 54.545 0.00 0.00 33.61 3.79
1879 3400 2.338500 GAACTTTCCTAGGACTGCACG 58.662 52.381 12.22 0.00 0.00 5.34
2075 3597 0.396435 ATGAACACGTGCCTGAGGAA 59.604 50.000 17.22 0.00 0.00 3.36
2157 3683 3.181491 CGCTTGGAAGAACAAAAGGTTGA 60.181 43.478 0.00 0.00 40.63 3.18
2174 3701 0.991146 TGAAGTGGGCAGAGGCAATA 59.009 50.000 0.00 0.00 43.71 1.90
2276 3890 3.525537 CAGCAACACCGATGAACTATCT 58.474 45.455 0.00 0.00 33.44 1.98
2357 3971 9.846248 ATGAATTGTCATTTGTTTAACTAGCTC 57.154 29.630 0.00 0.00 42.03 4.09
2374 3990 4.655762 AGCTCGCACTATGTTCAGATTA 57.344 40.909 0.00 0.00 0.00 1.75
2444 4061 0.936600 GTTGCAACCAAACACCATGC 59.063 50.000 19.15 0.00 37.52 4.06
2453 4070 2.496871 CCAAACACCATGCCATATGTGT 59.503 45.455 6.40 6.40 0.00 3.72
2468 4085 5.221087 CCATATGTGTGTCTAATGCAATGCA 60.221 40.000 11.44 11.44 44.86 3.96
2489 4106 2.593436 AACCAAACGCCGGGTCAG 60.593 61.111 2.18 0.00 36.05 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.278238 GTGTTGATGACGTCCCGATC 58.722 55.000 14.12 10.13 0.00 3.69
5 6 0.391263 GGAGGGTGTTGATGACGTCC 60.391 60.000 14.12 0.00 0.00 4.79
6 7 0.608640 AGGAGGGTGTTGATGACGTC 59.391 55.000 9.11 9.11 0.00 4.34
7 8 0.608640 GAGGAGGGTGTTGATGACGT 59.391 55.000 0.00 0.00 0.00 4.34
8 9 0.608130 TGAGGAGGGTGTTGATGACG 59.392 55.000 0.00 0.00 0.00 4.35
9 10 1.339151 GGTGAGGAGGGTGTTGATGAC 60.339 57.143 0.00 0.00 0.00 3.06
10 11 0.984230 GGTGAGGAGGGTGTTGATGA 59.016 55.000 0.00 0.00 0.00 2.92
11 12 0.391661 CGGTGAGGAGGGTGTTGATG 60.392 60.000 0.00 0.00 0.00 3.07
12 13 0.544357 TCGGTGAGGAGGGTGTTGAT 60.544 55.000 0.00 0.00 0.00 2.57
13 14 1.152419 TCGGTGAGGAGGGTGTTGA 60.152 57.895 0.00 0.00 0.00 3.18
14 15 1.004918 GTCGGTGAGGAGGGTGTTG 60.005 63.158 0.00 0.00 0.00 3.33
15 16 2.214920 GGTCGGTGAGGAGGGTGTT 61.215 63.158 0.00 0.00 0.00 3.32
16 17 1.797018 TAGGTCGGTGAGGAGGGTGT 61.797 60.000 0.00 0.00 0.00 4.16
17 18 1.000019 TAGGTCGGTGAGGAGGGTG 60.000 63.158 0.00 0.00 0.00 4.61
18 19 1.000107 GTAGGTCGGTGAGGAGGGT 60.000 63.158 0.00 0.00 0.00 4.34
19 20 2.119655 CGTAGGTCGGTGAGGAGGG 61.120 68.421 0.00 0.00 35.71 4.30
20 21 0.465824 ATCGTAGGTCGGTGAGGAGG 60.466 60.000 0.00 0.00 40.32 4.30
21 22 0.945813 GATCGTAGGTCGGTGAGGAG 59.054 60.000 0.00 0.00 40.32 3.69
22 23 0.812811 CGATCGTAGGTCGGTGAGGA 60.813 60.000 7.03 0.00 40.32 3.71
23 24 1.647629 CGATCGTAGGTCGGTGAGG 59.352 63.158 7.03 0.00 40.32 3.86
24 25 1.009900 GCGATCGTAGGTCGGTGAG 60.010 63.158 17.81 0.00 39.38 3.51
25 26 1.450848 AGCGATCGTAGGTCGGTGA 60.451 57.895 17.81 0.00 46.56 4.02
26 27 3.108343 AGCGATCGTAGGTCGGTG 58.892 61.111 17.81 0.00 46.56 4.94
30 31 2.051166 GGCGAGCGATCGTAGGTC 60.051 66.667 25.15 7.03 35.26 3.85
31 32 2.061182 GAAGGCGAGCGATCGTAGGT 62.061 60.000 25.15 7.66 35.26 3.08
32 33 1.370657 GAAGGCGAGCGATCGTAGG 60.371 63.158 25.15 7.00 35.26 3.18
33 34 1.370657 GGAAGGCGAGCGATCGTAG 60.371 63.158 25.15 9.43 35.26 3.51
34 35 2.719979 GGAAGGCGAGCGATCGTA 59.280 61.111 25.15 0.00 35.26 3.43
35 36 4.554363 CGGAAGGCGAGCGATCGT 62.554 66.667 25.15 4.36 35.26 3.73
53 54 4.176752 GGTAGGGGAGGCGCCAAG 62.177 72.222 31.54 0.00 39.05 3.61
54 55 4.733725 AGGTAGGGGAGGCGCCAA 62.734 66.667 31.54 3.10 39.05 4.52
59 60 4.902258 GGGGGAGGTAGGGGAGGC 62.902 77.778 0.00 0.00 0.00 4.70
83 84 2.124901 CACACACACACACGGGGT 60.125 61.111 0.00 0.00 0.00 4.95
84 85 3.582120 GCACACACACACACGGGG 61.582 66.667 0.00 0.00 0.00 5.73
85 86 3.582120 GGCACACACACACACGGG 61.582 66.667 0.00 0.00 0.00 5.28
86 87 1.653094 AAAGGCACACACACACACGG 61.653 55.000 0.00 0.00 0.00 4.94
87 88 0.170116 AAAAGGCACACACACACACG 59.830 50.000 0.00 0.00 0.00 4.49
88 89 2.094752 AGAAAAAGGCACACACACACAC 60.095 45.455 0.00 0.00 0.00 3.82
89 90 2.094803 CAGAAAAAGGCACACACACACA 60.095 45.455 0.00 0.00 0.00 3.72
90 91 2.094752 ACAGAAAAAGGCACACACACAC 60.095 45.455 0.00 0.00 0.00 3.82
91 92 2.166829 ACAGAAAAAGGCACACACACA 58.833 42.857 0.00 0.00 0.00 3.72
92 93 2.939460 ACAGAAAAAGGCACACACAC 57.061 45.000 0.00 0.00 0.00 3.82
93 94 3.088532 AGAACAGAAAAAGGCACACACA 58.911 40.909 0.00 0.00 0.00 3.72
94 95 3.128589 TGAGAACAGAAAAAGGCACACAC 59.871 43.478 0.00 0.00 0.00 3.82
95 96 3.351740 TGAGAACAGAAAAAGGCACACA 58.648 40.909 0.00 0.00 0.00 3.72
96 97 3.243201 CCTGAGAACAGAAAAAGGCACAC 60.243 47.826 0.00 0.00 46.03 3.82
97 98 2.951642 CCTGAGAACAGAAAAAGGCACA 59.048 45.455 0.00 0.00 46.03 4.57
98 99 2.294512 CCCTGAGAACAGAAAAAGGCAC 59.705 50.000 0.00 0.00 46.03 5.01
99 100 2.586425 CCCTGAGAACAGAAAAAGGCA 58.414 47.619 0.00 0.00 46.03 4.75
100 101 1.270826 GCCCTGAGAACAGAAAAAGGC 59.729 52.381 0.00 0.00 46.03 4.35
101 102 2.868899 AGCCCTGAGAACAGAAAAAGG 58.131 47.619 0.00 0.00 46.03 3.11
102 103 4.140536 AGAAGCCCTGAGAACAGAAAAAG 58.859 43.478 0.00 0.00 46.03 2.27
103 104 4.170468 AGAAGCCCTGAGAACAGAAAAA 57.830 40.909 0.00 0.00 46.03 1.94
104 105 3.864789 AGAAGCCCTGAGAACAGAAAA 57.135 42.857 0.00 0.00 46.03 2.29
105 106 3.136443 TCAAGAAGCCCTGAGAACAGAAA 59.864 43.478 0.00 0.00 46.03 2.52
106 107 2.705658 TCAAGAAGCCCTGAGAACAGAA 59.294 45.455 0.00 0.00 46.03 3.02
107 108 2.301296 CTCAAGAAGCCCTGAGAACAGA 59.699 50.000 0.00 0.00 46.03 3.41
108 109 2.038295 ACTCAAGAAGCCCTGAGAACAG 59.962 50.000 6.10 0.00 43.12 3.16
109 110 2.050144 ACTCAAGAAGCCCTGAGAACA 58.950 47.619 6.10 0.00 33.09 3.18
110 111 2.810852 CAACTCAAGAAGCCCTGAGAAC 59.189 50.000 6.10 0.00 33.09 3.01
111 112 2.439507 ACAACTCAAGAAGCCCTGAGAA 59.560 45.455 6.10 0.00 33.09 2.87
112 113 2.050144 ACAACTCAAGAAGCCCTGAGA 58.950 47.619 6.10 0.00 33.09 3.27
113 114 2.149578 CACAACTCAAGAAGCCCTGAG 58.850 52.381 0.00 0.00 34.81 3.35
114 115 1.815408 GCACAACTCAAGAAGCCCTGA 60.815 52.381 0.00 0.00 0.00 3.86
115 116 0.595095 GCACAACTCAAGAAGCCCTG 59.405 55.000 0.00 0.00 0.00 4.45
116 117 0.538287 GGCACAACTCAAGAAGCCCT 60.538 55.000 0.00 0.00 36.17 5.19
117 118 1.959848 GGCACAACTCAAGAAGCCC 59.040 57.895 0.00 0.00 36.17 5.19
118 119 0.538287 AGGGCACAACTCAAGAAGCC 60.538 55.000 0.00 0.00 41.29 4.35
119 120 0.877743 GAGGGCACAACTCAAGAAGC 59.122 55.000 0.00 0.00 35.09 3.86
120 121 2.149578 CTGAGGGCACAACTCAAGAAG 58.850 52.381 0.00 0.00 43.74 2.85
121 122 1.815408 GCTGAGGGCACAACTCAAGAA 60.815 52.381 0.00 0.00 43.74 2.52
122 123 0.250467 GCTGAGGGCACAACTCAAGA 60.250 55.000 0.00 0.00 43.74 3.02
123 124 2.251600 GCTGAGGGCACAACTCAAG 58.748 57.895 0.00 0.00 43.74 3.02
124 125 4.481195 GCTGAGGGCACAACTCAA 57.519 55.556 0.00 0.00 43.74 3.02
133 134 1.852633 AAAGGGTTAATGCTGAGGGC 58.147 50.000 0.00 0.00 42.22 5.19
134 135 2.497273 CCAAAAGGGTTAATGCTGAGGG 59.503 50.000 0.00 0.00 0.00 4.30
135 136 3.430453 TCCAAAAGGGTTAATGCTGAGG 58.570 45.455 0.00 0.00 38.11 3.86
136 137 4.098501 GGATCCAAAAGGGTTAATGCTGAG 59.901 45.833 6.95 0.00 38.11 3.35
137 138 4.023291 GGATCCAAAAGGGTTAATGCTGA 58.977 43.478 6.95 0.00 38.11 4.26
138 139 4.026052 AGGATCCAAAAGGGTTAATGCTG 58.974 43.478 15.82 0.00 38.11 4.41
139 140 4.026052 CAGGATCCAAAAGGGTTAATGCT 58.974 43.478 15.82 0.00 38.11 3.79
140 141 3.769300 ACAGGATCCAAAAGGGTTAATGC 59.231 43.478 15.82 0.00 38.11 3.56
141 142 4.772100 ACACAGGATCCAAAAGGGTTAATG 59.228 41.667 15.82 0.82 38.11 1.90
142 143 4.772100 CACACAGGATCCAAAAGGGTTAAT 59.228 41.667 15.82 0.00 38.11 1.40
143 144 4.148838 CACACAGGATCCAAAAGGGTTAA 58.851 43.478 15.82 0.00 38.11 2.01
144 145 3.139397 ACACACAGGATCCAAAAGGGTTA 59.861 43.478 15.82 0.00 38.11 2.85
145 146 2.091333 ACACACAGGATCCAAAAGGGTT 60.091 45.455 15.82 0.00 38.11 4.11
146 147 1.499007 ACACACAGGATCCAAAAGGGT 59.501 47.619 15.82 5.02 38.11 4.34
147 148 2.292828 ACACACAGGATCCAAAAGGG 57.707 50.000 15.82 4.32 38.37 3.95
148 149 3.753272 CAGTACACACAGGATCCAAAAGG 59.247 47.826 15.82 2.76 0.00 3.11
149 150 4.641396 TCAGTACACACAGGATCCAAAAG 58.359 43.478 15.82 3.18 0.00 2.27
150 151 4.346709 TCTCAGTACACACAGGATCCAAAA 59.653 41.667 15.82 0.00 0.00 2.44
151 152 3.901222 TCTCAGTACACACAGGATCCAAA 59.099 43.478 15.82 0.00 0.00 3.28
152 153 3.258372 GTCTCAGTACACACAGGATCCAA 59.742 47.826 15.82 0.00 0.00 3.53
153 154 2.826128 GTCTCAGTACACACAGGATCCA 59.174 50.000 15.82 0.00 0.00 3.41
154 155 3.093057 AGTCTCAGTACACACAGGATCC 58.907 50.000 2.48 2.48 0.00 3.36
155 156 4.792521 AAGTCTCAGTACACACAGGATC 57.207 45.455 0.00 0.00 0.00 3.36
156 157 5.717178 ACATAAGTCTCAGTACACACAGGAT 59.283 40.000 0.00 0.00 0.00 3.24
157 158 5.048013 CACATAAGTCTCAGTACACACAGGA 60.048 44.000 0.00 0.00 0.00 3.86
158 159 5.164233 CACATAAGTCTCAGTACACACAGG 58.836 45.833 0.00 0.00 0.00 4.00
159 160 5.773575 ACACATAAGTCTCAGTACACACAG 58.226 41.667 0.00 0.00 0.00 3.66
160 161 5.784578 ACACATAAGTCTCAGTACACACA 57.215 39.130 0.00 0.00 0.00 3.72
161 162 6.479001 ACAAACACATAAGTCTCAGTACACAC 59.521 38.462 0.00 0.00 0.00 3.82
162 163 6.478673 CACAAACACATAAGTCTCAGTACACA 59.521 38.462 0.00 0.00 0.00 3.72
163 164 6.564125 GCACAAACACATAAGTCTCAGTACAC 60.564 42.308 0.00 0.00 0.00 2.90
164 165 5.465390 GCACAAACACATAAGTCTCAGTACA 59.535 40.000 0.00 0.00 0.00 2.90
165 166 5.388475 CGCACAAACACATAAGTCTCAGTAC 60.388 44.000 0.00 0.00 0.00 2.73
166 167 4.684242 CGCACAAACACATAAGTCTCAGTA 59.316 41.667 0.00 0.00 0.00 2.74
167 168 3.494626 CGCACAAACACATAAGTCTCAGT 59.505 43.478 0.00 0.00 0.00 3.41
168 169 3.494626 ACGCACAAACACATAAGTCTCAG 59.505 43.478 0.00 0.00 0.00 3.35
169 170 3.247411 CACGCACAAACACATAAGTCTCA 59.753 43.478 0.00 0.00 0.00 3.27
170 171 3.247648 ACACGCACAAACACATAAGTCTC 59.752 43.478 0.00 0.00 0.00 3.36
171 172 3.002246 CACACGCACAAACACATAAGTCT 59.998 43.478 0.00 0.00 0.00 3.24
172 173 3.242608 ACACACGCACAAACACATAAGTC 60.243 43.478 0.00 0.00 0.00 3.01
173 174 2.680841 ACACACGCACAAACACATAAGT 59.319 40.909 0.00 0.00 0.00 2.24
174 175 3.035251 CACACACGCACAAACACATAAG 58.965 45.455 0.00 0.00 0.00 1.73
175 176 2.420372 ACACACACGCACAAACACATAA 59.580 40.909 0.00 0.00 0.00 1.90
176 177 2.010497 ACACACACGCACAAACACATA 58.990 42.857 0.00 0.00 0.00 2.29
177 178 0.808125 ACACACACGCACAAACACAT 59.192 45.000 0.00 0.00 0.00 3.21
178 179 0.110010 CACACACACGCACAAACACA 60.110 50.000 0.00 0.00 0.00 3.72
179 180 0.109964 ACACACACACGCACAAACAC 60.110 50.000 0.00 0.00 0.00 3.32
180 181 0.110010 CACACACACACGCACAAACA 60.110 50.000 0.00 0.00 0.00 2.83
181 182 0.109964 ACACACACACACGCACAAAC 60.110 50.000 0.00 0.00 0.00 2.93
182 183 0.110010 CACACACACACACGCACAAA 60.110 50.000 0.00 0.00 0.00 2.83
183 184 0.951040 TCACACACACACACGCACAA 60.951 50.000 0.00 0.00 0.00 3.33
184 185 0.951040 TTCACACACACACACGCACA 60.951 50.000 0.00 0.00 0.00 4.57
185 186 0.520412 GTTCACACACACACACGCAC 60.520 55.000 0.00 0.00 0.00 5.34
186 187 1.640210 GGTTCACACACACACACGCA 61.640 55.000 0.00 0.00 0.00 5.24
187 188 1.061887 GGTTCACACACACACACGC 59.938 57.895 0.00 0.00 0.00 5.34
188 189 1.929230 TAGGTTCACACACACACACG 58.071 50.000 0.00 0.00 0.00 4.49
189 190 4.391830 CCATATAGGTTCACACACACACAC 59.608 45.833 0.00 0.00 0.00 3.82
190 191 4.284746 TCCATATAGGTTCACACACACACA 59.715 41.667 0.00 0.00 39.02 3.72
191 192 4.827692 TCCATATAGGTTCACACACACAC 58.172 43.478 0.00 0.00 39.02 3.82
192 193 5.491323 TTCCATATAGGTTCACACACACA 57.509 39.130 0.00 0.00 39.02 3.72
193 194 5.880332 ACATTCCATATAGGTTCACACACAC 59.120 40.000 0.00 0.00 39.02 3.82
194 195 6.061022 ACATTCCATATAGGTTCACACACA 57.939 37.500 0.00 0.00 39.02 3.72
195 196 6.183360 CCAACATTCCATATAGGTTCACACAC 60.183 42.308 0.00 0.00 39.02 3.82
196 197 5.885352 CCAACATTCCATATAGGTTCACACA 59.115 40.000 0.00 0.00 39.02 3.72
197 198 5.221048 GCCAACATTCCATATAGGTTCACAC 60.221 44.000 0.00 0.00 39.02 3.82
198 199 4.887071 GCCAACATTCCATATAGGTTCACA 59.113 41.667 0.00 0.00 39.02 3.58
199 200 5.133221 AGCCAACATTCCATATAGGTTCAC 58.867 41.667 0.00 0.00 39.02 3.18
200 201 5.387113 AGCCAACATTCCATATAGGTTCA 57.613 39.130 0.00 0.00 39.02 3.18
201 202 5.010012 CCAAGCCAACATTCCATATAGGTTC 59.990 44.000 0.00 0.00 39.02 3.62
202 203 4.895297 CCAAGCCAACATTCCATATAGGTT 59.105 41.667 0.00 0.00 39.02 3.50
203 204 4.473444 CCAAGCCAACATTCCATATAGGT 58.527 43.478 0.00 0.00 39.02 3.08
204 205 3.828451 CCCAAGCCAACATTCCATATAGG 59.172 47.826 0.00 0.00 39.47 2.57
205 206 3.256631 GCCCAAGCCAACATTCCATATAG 59.743 47.826 0.00 0.00 0.00 1.31
206 207 3.230134 GCCCAAGCCAACATTCCATATA 58.770 45.455 0.00 0.00 0.00 0.86
207 208 2.041701 GCCCAAGCCAACATTCCATAT 58.958 47.619 0.00 0.00 0.00 1.78
208 209 1.272928 TGCCCAAGCCAACATTCCATA 60.273 47.619 0.00 0.00 38.69 2.74
209 210 0.544833 TGCCCAAGCCAACATTCCAT 60.545 50.000 0.00 0.00 38.69 3.41
210 211 1.152376 TGCCCAAGCCAACATTCCA 60.152 52.632 0.00 0.00 38.69 3.53
211 212 1.187567 ACTGCCCAAGCCAACATTCC 61.188 55.000 0.00 0.00 38.69 3.01
212 213 0.681175 AACTGCCCAAGCCAACATTC 59.319 50.000 0.00 0.00 38.69 2.67
213 214 0.393820 CAACTGCCCAAGCCAACATT 59.606 50.000 0.00 0.00 38.69 2.71
214 215 2.051941 CAACTGCCCAAGCCAACAT 58.948 52.632 0.00 0.00 38.69 2.71
215 216 2.795110 GCAACTGCCCAAGCCAACA 61.795 57.895 0.00 0.00 38.69 3.33
216 217 2.029518 GCAACTGCCCAAGCCAAC 59.970 61.111 0.00 0.00 38.69 3.77
217 218 1.336632 AAAGCAACTGCCCAAGCCAA 61.337 50.000 0.00 0.00 43.38 4.52
218 219 0.468958 TAAAGCAACTGCCCAAGCCA 60.469 50.000 0.00 0.00 43.38 4.75
219 220 0.897621 ATAAAGCAACTGCCCAAGCC 59.102 50.000 0.00 0.00 43.38 4.35
220 221 3.866883 TTATAAAGCAACTGCCCAAGC 57.133 42.857 0.00 0.00 43.38 4.01
221 222 9.683069 CTTTATATTATAAAGCAACTGCCCAAG 57.317 33.333 18.54 0.00 43.38 3.61
233 234 6.730960 TTCGCCCCGCTTTATATTATAAAG 57.269 37.500 23.28 23.28 37.53 1.85
234 235 6.348704 GCTTTCGCCCCGCTTTATATTATAAA 60.349 38.462 8.26 8.26 0.00 1.40
235 236 5.122711 GCTTTCGCCCCGCTTTATATTATAA 59.877 40.000 0.00 0.00 0.00 0.98
236 237 4.632688 GCTTTCGCCCCGCTTTATATTATA 59.367 41.667 0.00 0.00 0.00 0.98
237 238 3.439129 GCTTTCGCCCCGCTTTATATTAT 59.561 43.478 0.00 0.00 0.00 1.28
238 239 2.809696 GCTTTCGCCCCGCTTTATATTA 59.190 45.455 0.00 0.00 0.00 0.98
239 240 1.607148 GCTTTCGCCCCGCTTTATATT 59.393 47.619 0.00 0.00 0.00 1.28
240 241 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
241 242 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
242 243 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
252 253 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
254 255 5.161358 CCAGATTTACCGAAAAAGGCTTTC 58.839 41.667 13.76 0.41 33.69 2.62
255 256 4.560716 GCCAGATTTACCGAAAAAGGCTTT 60.561 41.667 6.68 6.68 39.02 3.51
256 257 3.056821 GCCAGATTTACCGAAAAAGGCTT 60.057 43.478 0.00 0.00 39.02 4.35
257 258 2.492088 GCCAGATTTACCGAAAAAGGCT 59.508 45.455 0.00 0.00 39.02 4.58
258 259 2.492088 AGCCAGATTTACCGAAAAAGGC 59.508 45.455 0.00 0.00 40.81 4.35
259 260 5.676331 GCTTAGCCAGATTTACCGAAAAAGG 60.676 44.000 0.00 0.00 37.30 3.11
260 261 5.123979 AGCTTAGCCAGATTTACCGAAAAAG 59.876 40.000 0.00 0.00 0.00 2.27
261 262 5.007682 AGCTTAGCCAGATTTACCGAAAAA 58.992 37.500 0.00 0.00 0.00 1.94
262 263 4.394920 CAGCTTAGCCAGATTTACCGAAAA 59.605 41.667 0.00 0.00 0.00 2.29
263 264 3.938963 CAGCTTAGCCAGATTTACCGAAA 59.061 43.478 0.00 0.00 0.00 3.46
264 265 3.531538 CAGCTTAGCCAGATTTACCGAA 58.468 45.455 0.00 0.00 0.00 4.30
265 266 2.741878 GCAGCTTAGCCAGATTTACCGA 60.742 50.000 0.00 0.00 0.00 4.69
266 267 1.599542 GCAGCTTAGCCAGATTTACCG 59.400 52.381 0.00 0.00 0.00 4.02
267 268 2.875317 GAGCAGCTTAGCCAGATTTACC 59.125 50.000 0.00 0.00 34.23 2.85
268 269 2.875317 GGAGCAGCTTAGCCAGATTTAC 59.125 50.000 0.00 0.00 34.23 2.01
269 270 2.505407 TGGAGCAGCTTAGCCAGATTTA 59.495 45.455 0.00 0.00 34.23 1.40
270 271 1.283029 TGGAGCAGCTTAGCCAGATTT 59.717 47.619 0.00 0.00 34.23 2.17
271 272 0.914644 TGGAGCAGCTTAGCCAGATT 59.085 50.000 0.00 0.00 34.23 2.40
272 273 0.179936 GTGGAGCAGCTTAGCCAGAT 59.820 55.000 0.00 0.00 34.23 2.90
273 274 1.599047 GTGGAGCAGCTTAGCCAGA 59.401 57.895 0.00 0.00 34.23 3.86
274 275 1.451028 GGTGGAGCAGCTTAGCCAG 60.451 63.158 0.00 0.00 34.23 4.85
275 276 0.617535 TAGGTGGAGCAGCTTAGCCA 60.618 55.000 0.00 0.00 42.44 4.75
276 277 0.761802 ATAGGTGGAGCAGCTTAGCC 59.238 55.000 0.00 0.00 42.44 3.93
277 278 3.259374 TCATATAGGTGGAGCAGCTTAGC 59.741 47.826 0.00 0.00 42.44 3.09
278 279 4.322349 GGTCATATAGGTGGAGCAGCTTAG 60.322 50.000 0.00 0.00 42.44 2.18
279 280 3.578716 GGTCATATAGGTGGAGCAGCTTA 59.421 47.826 0.00 0.00 42.44 3.09
280 281 2.370189 GGTCATATAGGTGGAGCAGCTT 59.630 50.000 0.00 0.00 42.44 3.74
281 282 1.974236 GGTCATATAGGTGGAGCAGCT 59.026 52.381 0.00 0.00 44.66 4.24
282 283 1.002544 GGGTCATATAGGTGGAGCAGC 59.997 57.143 0.00 0.00 0.00 5.25
283 284 2.037772 GTGGGTCATATAGGTGGAGCAG 59.962 54.545 0.00 0.00 0.00 4.24
284 285 2.047061 GTGGGTCATATAGGTGGAGCA 58.953 52.381 0.00 0.00 0.00 4.26
285 286 2.047061 TGTGGGTCATATAGGTGGAGC 58.953 52.381 0.00 0.00 0.00 4.70
286 287 2.368875 GGTGTGGGTCATATAGGTGGAG 59.631 54.545 0.00 0.00 0.00 3.86
287 288 2.293251 TGGTGTGGGTCATATAGGTGGA 60.293 50.000 0.00 0.00 0.00 4.02
288 289 2.104792 CTGGTGTGGGTCATATAGGTGG 59.895 54.545 0.00 0.00 0.00 4.61
289 290 2.485479 GCTGGTGTGGGTCATATAGGTG 60.485 54.545 0.00 0.00 0.00 4.00
290 291 1.768870 GCTGGTGTGGGTCATATAGGT 59.231 52.381 0.00 0.00 0.00 3.08
291 292 1.072331 GGCTGGTGTGGGTCATATAGG 59.928 57.143 0.00 0.00 0.00 2.57
292 293 2.037772 GAGGCTGGTGTGGGTCATATAG 59.962 54.545 0.00 0.00 0.00 1.31
293 294 2.047061 GAGGCTGGTGTGGGTCATATA 58.953 52.381 0.00 0.00 0.00 0.86
294 295 0.839946 GAGGCTGGTGTGGGTCATAT 59.160 55.000 0.00 0.00 0.00 1.78
295 296 0.546507 TGAGGCTGGTGTGGGTCATA 60.547 55.000 0.00 0.00 0.00 2.15
296 297 1.210204 ATGAGGCTGGTGTGGGTCAT 61.210 55.000 0.00 0.00 0.00 3.06
297 298 1.847506 ATGAGGCTGGTGTGGGTCA 60.848 57.895 0.00 0.00 0.00 4.02
298 299 1.377725 CATGAGGCTGGTGTGGGTC 60.378 63.158 0.00 0.00 0.00 4.46
299 300 2.759114 CATGAGGCTGGTGTGGGT 59.241 61.111 0.00 0.00 0.00 4.51
300 301 2.044650 CCATGAGGCTGGTGTGGG 60.045 66.667 0.00 0.00 0.00 4.61
310 311 1.202222 GCGATTGCTTCAACCATGAGG 60.202 52.381 0.00 0.00 36.78 3.86
311 312 2.184385 GCGATTGCTTCAACCATGAG 57.816 50.000 0.00 0.00 36.78 2.90
330 331 1.601663 GCGTCTGTGCTAGATGGCTAG 60.602 57.143 11.16 0.00 45.63 3.42
331 332 0.385751 GCGTCTGTGCTAGATGGCTA 59.614 55.000 11.16 0.00 41.79 3.93
332 333 1.142748 GCGTCTGTGCTAGATGGCT 59.857 57.895 11.16 0.00 41.79 4.75
333 334 3.711348 GCGTCTGTGCTAGATGGC 58.289 61.111 11.16 7.13 41.79 4.40
334 335 0.108186 TTGGCGTCTGTGCTAGATGG 60.108 55.000 11.16 2.22 41.79 3.51
335 336 1.284657 CTTGGCGTCTGTGCTAGATG 58.715 55.000 0.00 6.45 43.89 2.90
336 337 0.176680 CCTTGGCGTCTGTGCTAGAT 59.823 55.000 0.00 0.00 37.83 1.98
337 338 1.591703 CCTTGGCGTCTGTGCTAGA 59.408 57.895 0.00 0.00 34.52 2.43
338 339 1.448540 CCCTTGGCGTCTGTGCTAG 60.449 63.158 0.00 0.00 34.52 3.42
339 340 2.662596 CCCTTGGCGTCTGTGCTA 59.337 61.111 0.00 0.00 34.52 3.49
349 350 2.791868 AACCAAACACGCCCTTGGC 61.792 57.895 9.30 0.00 45.08 4.52
415 416 1.068588 GAGGAAAACCAGGCAACCAAC 59.931 52.381 0.00 0.00 37.17 3.77
435 436 3.818787 GTGCGATGCAGGCCCAAG 61.819 66.667 0.00 0.00 40.08 3.61
699 734 2.047844 CGCTGCCGCCTATAGCAT 60.048 61.111 0.00 0.00 44.04 3.79
838 913 2.386935 GGGAGGGGGTGCTGCTTAT 61.387 63.158 0.00 0.00 0.00 1.73
892 973 3.536956 GTGGGAAATCGATCCTACACA 57.463 47.619 14.68 4.73 46.88 3.72
952 1033 4.660168 CTGCCTGGATTATTAGCCTCAAT 58.340 43.478 0.00 0.00 0.00 2.57
953 1034 3.748668 GCTGCCTGGATTATTAGCCTCAA 60.749 47.826 0.00 0.00 0.00 3.02
1072 1161 2.284699 CTCTCCTGTTCCCGGGGT 60.285 66.667 23.50 0.00 37.74 4.95
1106 1197 1.201812 CGTCGTTGCAGTTGTAGATGC 60.202 52.381 0.00 0.00 42.86 3.91
1137 1228 5.356190 TGCTCTTTTCATTCTAAGCATCCAG 59.644 40.000 0.00 0.00 35.02 3.86
1230 1321 2.936919 ACATGACCACTTGCTCTTCA 57.063 45.000 0.00 0.00 0.00 3.02
1259 1350 1.004745 ACCTCTGGTTATGGCCAACAG 59.995 52.381 10.96 16.16 38.18 3.16
1283 1374 2.872245 CTGAACGTGTTGTGAATGACCT 59.128 45.455 0.00 0.00 0.00 3.85
1405 1497 1.449601 GGCTTCCGCGAATCTTGGA 60.450 57.895 8.23 0.00 36.88 3.53
1424 1516 7.567250 TCACCTTGAAGTATGGATACCATCTTA 59.433 37.037 6.55 0.00 40.74 2.10
1516 1611 3.054139 TCCTGAAAATGGCATCACTAGCT 60.054 43.478 0.00 0.00 0.00 3.32
1635 1731 3.130869 TCAAAGTCAACAACAGCAAGCAT 59.869 39.130 0.00 0.00 0.00 3.79
1745 1841 1.451387 GCCGTCGGGGATGTTGATT 60.451 57.895 14.38 0.00 38.47 2.57
1821 3342 5.562113 CGTTGAGATGGTACCTTGTTTTTCC 60.562 44.000 14.36 0.00 0.00 3.13
2090 3615 1.350684 TGGCCAGAGCTAACAACATCA 59.649 47.619 0.00 0.00 39.73 3.07
2157 3683 1.410648 CCATATTGCCTCTGCCCACTT 60.411 52.381 0.00 0.00 36.33 3.16
2174 3701 2.558359 GCACTGACCTTTGTTAAGCCAT 59.442 45.455 0.00 0.00 0.00 4.40
2336 3950 5.237561 TGCGAGCTAGTTAAACAAATGACAA 59.762 36.000 0.00 0.00 0.00 3.18
2357 3971 5.277011 CCACACATAATCTGAACATAGTGCG 60.277 44.000 0.00 0.00 0.00 5.34
2444 4061 5.217393 GCATTGCATTAGACACACATATGG 58.783 41.667 7.80 0.00 0.00 2.74
2453 4070 1.836802 TGCCTGCATTGCATTAGACA 58.163 45.000 12.53 3.69 38.13 3.41
2489 4106 4.510038 AGTTGCATGAGACAACCATTTC 57.490 40.909 10.06 0.00 46.85 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.