Multiple sequence alignment - TraesCS6B01G282700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G282700 chr6B 100.000 2498 0 0 1 2498 509320346 509317849 0.000000e+00 4614
1 TraesCS6B01G282700 chr6B 86.179 492 60 8 2011 2498 654830096 654829609 2.200000e-145 525
2 TraesCS6B01G282700 chr6B 89.947 189 18 1 1805 1992 675395932 675396120 2.480000e-60 243
3 TraesCS6B01G282700 chr6B 87.931 116 11 3 5 120 687497812 687497700 1.560000e-27 134
4 TraesCS6B01G282700 chr6D 94.094 999 32 8 833 1805 315750262 315751259 0.000000e+00 1493
5 TraesCS6B01G282700 chr6D 91.542 603 36 6 211 800 315749660 315750260 0.000000e+00 817
6 TraesCS6B01G282700 chr6D 85.000 120 17 1 9 128 175723086 175722968 1.210000e-23 121
7 TraesCS6B01G282700 chr6A 89.648 1024 44 21 833 1805 453552551 453553563 0.000000e+00 1247
8 TraesCS6B01G282700 chr6A 92.034 590 30 8 211 800 453551977 453552549 0.000000e+00 813
9 TraesCS6B01G282700 chr6A 84.000 125 19 1 5 129 8448482 8448359 4.360000e-23 119
10 TraesCS6B01G282700 chr3D 88.623 501 51 6 1992 2488 170100070 170099572 2.750000e-169 604
11 TraesCS6B01G282700 chr3D 87.867 511 53 7 1992 2498 178650281 178649776 2.140000e-165 592
12 TraesCS6B01G282700 chr3D 89.529 191 20 0 1802 1992 311870950 311870760 2.480000e-60 243
13 TraesCS6B01G282700 chr3A 88.016 509 54 7 1994 2498 207720179 207719674 1.650000e-166 595
14 TraesCS6B01G282700 chr3B 86.902 481 56 7 1992 2467 257092646 257092168 1.320000e-147 532
15 TraesCS6B01G282700 chr3B 89.231 195 20 1 1798 1992 191186858 191186665 2.480000e-60 243
16 TraesCS6B01G282700 chr3B 85.950 121 16 1 5 125 452910183 452910064 7.250000e-26 128
17 TraesCS6B01G282700 chr7D 91.667 276 21 2 2221 2495 52479572 52479846 5.040000e-102 381
18 TraesCS6B01G282700 chr7D 90.270 185 18 0 1808 1992 43371785 43371601 2.480000e-60 243
19 TraesCS6B01G282700 chr1D 78.654 520 86 18 1992 2493 21536558 21537070 3.100000e-84 322
20 TraesCS6B01G282700 chr1D 85.950 121 15 2 5 125 2426125 2426243 7.250000e-26 128
21 TraesCS6B01G282700 chr1D 83.740 123 19 1 3 125 191511770 191511891 5.650000e-22 115
22 TraesCS6B01G282700 chr4A 77.183 504 95 19 1989 2480 550293419 550293914 2.450000e-70 276
23 TraesCS6B01G282700 chr4A 89.894 188 19 0 1805 1992 595284750 595284563 2.480000e-60 243
24 TraesCS6B01G282700 chr4A 81.208 298 51 5 2189 2483 550510116 550510411 4.150000e-58 235
25 TraesCS6B01G282700 chr5B 89.529 191 20 0 1802 1992 593216154 593216344 2.480000e-60 243
26 TraesCS6B01G282700 chr1B 89.175 194 21 0 1799 1992 458384033 458384226 2.480000e-60 243
27 TraesCS6B01G282700 chr4B 89.175 194 20 1 1800 1992 596782209 596782402 8.930000e-60 241
28 TraesCS6B01G282700 chr4D 89.785 186 19 0 1807 1992 73225541 73225356 3.210000e-59 239
29 TraesCS6B01G282700 chr7B 88.889 117 12 1 9 125 336528825 336528710 2.590000e-30 143
30 TraesCS6B01G282700 chr2B 86.179 123 16 1 3 125 31506496 31506617 5.610000e-27 132
31 TraesCS6B01G282700 chr2D 84.553 123 18 1 3 125 225315739 225315860 1.210000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G282700 chr6B 509317849 509320346 2497 True 4614 4614 100.000 1 2498 1 chr6B.!!$R1 2497
1 TraesCS6B01G282700 chr6D 315749660 315751259 1599 False 1155 1493 92.818 211 1805 2 chr6D.!!$F1 1594
2 TraesCS6B01G282700 chr6A 453551977 453553563 1586 False 1030 1247 90.841 211 1805 2 chr6A.!!$F1 1594
3 TraesCS6B01G282700 chr3D 178649776 178650281 505 True 592 592 87.867 1992 2498 1 chr3D.!!$R2 506
4 TraesCS6B01G282700 chr3A 207719674 207720179 505 True 595 595 88.016 1994 2498 1 chr3A.!!$R1 504
5 TraesCS6B01G282700 chr1D 21536558 21537070 512 False 322 322 78.654 1992 2493 1 chr1D.!!$F2 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.036858 GCAACGCTTCCTCTCTTCCT 60.037 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 1899 0.042131 ACGGTCCCTCTAACCATCCA 59.958 55.0 0.0 0.0 36.53 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.975410 ACTCGTTATATTGCTTGAGCTTC 57.025 39.130 4.44 0.00 42.66 3.86
23 24 5.419542 ACTCGTTATATTGCTTGAGCTTCA 58.580 37.500 4.44 0.00 42.66 3.02
24 25 6.051717 ACTCGTTATATTGCTTGAGCTTCAT 58.948 36.000 4.44 0.00 42.66 2.57
25 26 6.018425 ACTCGTTATATTGCTTGAGCTTCATG 60.018 38.462 4.44 0.00 42.66 3.07
26 27 5.237127 TCGTTATATTGCTTGAGCTTCATGG 59.763 40.000 4.44 0.00 42.66 3.66
27 28 5.561532 CGTTATATTGCTTGAGCTTCATGGG 60.562 44.000 4.44 0.00 42.66 4.00
28 29 0.822164 ATTGCTTGAGCTTCATGGGC 59.178 50.000 4.44 0.00 42.66 5.36
29 30 0.540133 TTGCTTGAGCTTCATGGGCA 60.540 50.000 12.59 0.00 42.66 5.36
30 31 0.323999 TGCTTGAGCTTCATGGGCAT 60.324 50.000 12.59 0.64 42.66 4.40
31 32 1.064537 TGCTTGAGCTTCATGGGCATA 60.065 47.619 12.59 0.76 42.66 3.14
32 33 2.236766 GCTTGAGCTTCATGGGCATAT 58.763 47.619 12.59 0.00 38.21 1.78
33 34 3.181441 TGCTTGAGCTTCATGGGCATATA 60.181 43.478 12.59 0.00 42.66 0.86
34 35 4.015084 GCTTGAGCTTCATGGGCATATAT 58.985 43.478 12.59 0.00 38.21 0.86
35 36 5.188434 GCTTGAGCTTCATGGGCATATATA 58.812 41.667 12.59 0.00 38.21 0.86
36 37 5.649395 GCTTGAGCTTCATGGGCATATATAA 59.351 40.000 12.59 0.92 38.21 0.98
37 38 6.151648 GCTTGAGCTTCATGGGCATATATAAA 59.848 38.462 12.59 0.00 38.21 1.40
38 39 7.627939 GCTTGAGCTTCATGGGCATATATAAAG 60.628 40.741 12.59 3.67 38.21 1.85
39 40 6.182627 TGAGCTTCATGGGCATATATAAAGG 58.817 40.000 12.59 0.00 0.00 3.11
40 41 6.012596 TGAGCTTCATGGGCATATATAAAGGA 60.013 38.462 12.59 0.00 0.00 3.36
41 42 6.421485 AGCTTCATGGGCATATATAAAGGAG 58.579 40.000 12.59 0.00 0.00 3.69
42 43 6.012157 AGCTTCATGGGCATATATAAAGGAGT 60.012 38.462 12.59 0.00 0.00 3.85
43 44 7.182749 AGCTTCATGGGCATATATAAAGGAGTA 59.817 37.037 12.59 0.00 0.00 2.59
44 45 7.281100 GCTTCATGGGCATATATAAAGGAGTAC 59.719 40.741 6.69 0.00 0.00 2.73
45 46 7.806680 TCATGGGCATATATAAAGGAGTACA 57.193 36.000 0.00 0.00 0.00 2.90
46 47 8.392631 TCATGGGCATATATAAAGGAGTACAT 57.607 34.615 0.00 0.00 0.00 2.29
47 48 8.267183 TCATGGGCATATATAAAGGAGTACATG 58.733 37.037 0.00 0.00 0.00 3.21
48 49 7.806680 TGGGCATATATAAAGGAGTACATGA 57.193 36.000 0.00 0.00 0.00 3.07
49 50 8.392631 TGGGCATATATAAAGGAGTACATGAT 57.607 34.615 0.00 0.00 0.00 2.45
50 51 8.486210 TGGGCATATATAAAGGAGTACATGATC 58.514 37.037 0.00 0.00 0.00 2.92
51 52 8.486210 GGGCATATATAAAGGAGTACATGATCA 58.514 37.037 0.00 0.00 0.00 2.92
59 60 9.775854 ATAAAGGAGTACATGATCATCTTGAAG 57.224 33.333 4.86 0.00 0.00 3.02
60 61 6.805016 AGGAGTACATGATCATCTTGAAGT 57.195 37.500 4.86 2.23 0.00 3.01
61 62 7.904558 AGGAGTACATGATCATCTTGAAGTA 57.095 36.000 4.86 1.20 0.00 2.24
62 63 7.721402 AGGAGTACATGATCATCTTGAAGTAC 58.279 38.462 17.66 17.66 31.14 2.73
63 64 7.343057 AGGAGTACATGATCATCTTGAAGTACA 59.657 37.037 23.22 0.00 32.27 2.90
64 65 7.981789 GGAGTACATGATCATCTTGAAGTACAA 59.018 37.037 23.22 0.00 32.27 2.41
75 76 4.415881 TTGAAGTACAAGTCAAGGCAGA 57.584 40.909 0.00 0.00 34.20 4.26
76 77 4.415881 TGAAGTACAAGTCAAGGCAGAA 57.584 40.909 0.00 0.00 0.00 3.02
77 78 4.776349 TGAAGTACAAGTCAAGGCAGAAA 58.224 39.130 0.00 0.00 0.00 2.52
78 79 4.574828 TGAAGTACAAGTCAAGGCAGAAAC 59.425 41.667 0.00 0.00 0.00 2.78
79 80 4.150897 AGTACAAGTCAAGGCAGAAACA 57.849 40.909 0.00 0.00 0.00 2.83
80 81 4.523083 AGTACAAGTCAAGGCAGAAACAA 58.477 39.130 0.00 0.00 0.00 2.83
81 82 4.947388 AGTACAAGTCAAGGCAGAAACAAA 59.053 37.500 0.00 0.00 0.00 2.83
82 83 5.594317 AGTACAAGTCAAGGCAGAAACAAAT 59.406 36.000 0.00 0.00 0.00 2.32
83 84 4.936891 ACAAGTCAAGGCAGAAACAAATC 58.063 39.130 0.00 0.00 0.00 2.17
84 85 3.904136 AGTCAAGGCAGAAACAAATCG 57.096 42.857 0.00 0.00 0.00 3.34
85 86 3.214328 AGTCAAGGCAGAAACAAATCGT 58.786 40.909 0.00 0.00 0.00 3.73
86 87 4.385825 AGTCAAGGCAGAAACAAATCGTA 58.614 39.130 0.00 0.00 0.00 3.43
87 88 4.213482 AGTCAAGGCAGAAACAAATCGTAC 59.787 41.667 0.00 0.00 0.00 3.67
88 89 3.185594 TCAAGGCAGAAACAAATCGTACG 59.814 43.478 9.53 9.53 0.00 3.67
89 90 1.463444 AGGCAGAAACAAATCGTACGC 59.537 47.619 11.24 0.00 0.00 4.42
90 91 1.463444 GGCAGAAACAAATCGTACGCT 59.537 47.619 11.24 0.00 0.00 5.07
91 92 2.669434 GGCAGAAACAAATCGTACGCTA 59.331 45.455 11.24 0.00 0.00 4.26
92 93 3.308866 GGCAGAAACAAATCGTACGCTAT 59.691 43.478 11.24 0.00 0.00 2.97
93 94 4.506217 GCAGAAACAAATCGTACGCTATC 58.494 43.478 11.24 2.00 0.00 2.08
94 95 4.550255 GCAGAAACAAATCGTACGCTATCC 60.550 45.833 11.24 0.00 0.00 2.59
95 96 4.804139 CAGAAACAAATCGTACGCTATCCT 59.196 41.667 11.24 0.00 0.00 3.24
96 97 5.975344 CAGAAACAAATCGTACGCTATCCTA 59.025 40.000 11.24 0.00 0.00 2.94
97 98 6.641314 CAGAAACAAATCGTACGCTATCCTAT 59.359 38.462 11.24 0.00 0.00 2.57
98 99 6.641314 AGAAACAAATCGTACGCTATCCTATG 59.359 38.462 11.24 3.57 0.00 2.23
99 100 5.449107 ACAAATCGTACGCTATCCTATGT 57.551 39.130 11.24 4.18 0.00 2.29
100 101 5.839621 ACAAATCGTACGCTATCCTATGTT 58.160 37.500 11.24 0.00 0.00 2.71
101 102 6.278363 ACAAATCGTACGCTATCCTATGTTT 58.722 36.000 11.24 0.00 0.00 2.83
102 103 6.759827 ACAAATCGTACGCTATCCTATGTTTT 59.240 34.615 11.24 0.00 0.00 2.43
103 104 7.279313 ACAAATCGTACGCTATCCTATGTTTTT 59.721 33.333 11.24 0.00 0.00 1.94
127 128 9.557338 TTTTAAATAAACATTATACGCAACGCT 57.443 25.926 0.00 0.00 0.00 5.07
128 129 9.557338 TTTAAATAAACATTATACGCAACGCTT 57.443 25.926 0.00 0.00 0.00 4.68
129 130 7.659290 AAATAAACATTATACGCAACGCTTC 57.341 32.000 0.00 0.00 0.00 3.86
130 131 3.668596 AACATTATACGCAACGCTTCC 57.331 42.857 0.00 0.00 0.00 3.46
131 132 2.901249 ACATTATACGCAACGCTTCCT 58.099 42.857 0.00 0.00 0.00 3.36
132 133 2.864343 ACATTATACGCAACGCTTCCTC 59.136 45.455 0.00 0.00 0.00 3.71
133 134 2.953466 TTATACGCAACGCTTCCTCT 57.047 45.000 0.00 0.00 0.00 3.69
134 135 2.486951 TATACGCAACGCTTCCTCTC 57.513 50.000 0.00 0.00 0.00 3.20
135 136 0.818296 ATACGCAACGCTTCCTCTCT 59.182 50.000 0.00 0.00 0.00 3.10
136 137 0.601558 TACGCAACGCTTCCTCTCTT 59.398 50.000 0.00 0.00 0.00 2.85
137 138 0.667792 ACGCAACGCTTCCTCTCTTC 60.668 55.000 0.00 0.00 0.00 2.87
138 139 1.355066 CGCAACGCTTCCTCTCTTCC 61.355 60.000 0.00 0.00 0.00 3.46
139 140 0.036858 GCAACGCTTCCTCTCTTCCT 60.037 55.000 0.00 0.00 0.00 3.36
140 141 1.204941 GCAACGCTTCCTCTCTTCCTA 59.795 52.381 0.00 0.00 0.00 2.94
141 142 2.737039 GCAACGCTTCCTCTCTTCCTAG 60.737 54.545 0.00 0.00 0.00 3.02
142 143 1.770294 ACGCTTCCTCTCTTCCTAGG 58.230 55.000 0.82 0.82 0.00 3.02
143 144 1.036707 CGCTTCCTCTCTTCCTAGGG 58.963 60.000 9.46 0.00 33.40 3.53
144 145 0.756294 GCTTCCTCTCTTCCTAGGGC 59.244 60.000 9.46 0.00 33.40 5.19
145 146 1.967274 GCTTCCTCTCTTCCTAGGGCA 60.967 57.143 9.46 0.00 33.40 5.36
146 147 2.472029 CTTCCTCTCTTCCTAGGGCAA 58.528 52.381 9.46 0.00 33.40 4.52
147 148 2.877154 TCCTCTCTTCCTAGGGCAAT 57.123 50.000 9.46 0.00 33.40 3.56
148 149 3.993658 TCCTCTCTTCCTAGGGCAATA 57.006 47.619 9.46 0.00 33.40 1.90
149 150 4.280789 TCCTCTCTTCCTAGGGCAATAA 57.719 45.455 9.46 0.00 33.40 1.40
150 151 4.631234 TCCTCTCTTCCTAGGGCAATAAA 58.369 43.478 9.46 0.00 33.40 1.40
151 152 5.036916 TCCTCTCTTCCTAGGGCAATAAAA 58.963 41.667 9.46 0.00 33.40 1.52
152 153 5.672194 TCCTCTCTTCCTAGGGCAATAAAAT 59.328 40.000 9.46 0.00 33.40 1.82
153 154 5.767168 CCTCTCTTCCTAGGGCAATAAAATG 59.233 44.000 9.46 0.00 0.00 2.32
154 155 5.694995 TCTCTTCCTAGGGCAATAAAATGG 58.305 41.667 9.46 0.00 0.00 3.16
155 156 4.215109 TCTTCCTAGGGCAATAAAATGGC 58.785 43.478 9.46 0.00 44.56 4.40
156 157 3.971468 TCCTAGGGCAATAAAATGGCT 57.029 42.857 9.46 0.00 44.67 4.75
157 158 5.133660 TCTTCCTAGGGCAATAAAATGGCTA 59.866 40.000 9.46 0.00 44.67 3.93
158 159 5.396057 TCCTAGGGCAATAAAATGGCTAA 57.604 39.130 9.46 0.00 44.67 3.09
159 160 5.964288 TCCTAGGGCAATAAAATGGCTAAT 58.036 37.500 9.46 0.00 44.67 1.73
160 161 6.010219 TCCTAGGGCAATAAAATGGCTAATC 58.990 40.000 9.46 0.00 44.67 1.75
161 162 6.012745 CCTAGGGCAATAAAATGGCTAATCT 58.987 40.000 0.00 0.00 44.67 2.40
162 163 7.018149 TCCTAGGGCAATAAAATGGCTAATCTA 59.982 37.037 9.46 0.00 44.67 1.98
163 164 7.836183 CCTAGGGCAATAAAATGGCTAATCTAT 59.164 37.037 0.00 0.00 44.67 1.98
164 165 7.709149 AGGGCAATAAAATGGCTAATCTATC 57.291 36.000 0.86 0.00 44.67 2.08
165 166 6.665248 AGGGCAATAAAATGGCTAATCTATCC 59.335 38.462 0.86 0.00 44.67 2.59
166 167 6.404734 GGGCAATAAAATGGCTAATCTATCCG 60.405 42.308 0.86 0.00 44.67 4.18
167 168 6.151144 GGCAATAAAATGGCTAATCTATCCGT 59.849 38.462 0.00 0.00 42.22 4.69
168 169 7.309194 GGCAATAAAATGGCTAATCTATCCGTT 60.309 37.037 0.00 0.00 42.22 4.44
169 170 8.082242 GCAATAAAATGGCTAATCTATCCGTTT 58.918 33.333 0.00 0.00 39.89 3.60
170 171 9.965824 CAATAAAATGGCTAATCTATCCGTTTT 57.034 29.630 13.01 13.01 45.63 2.43
172 173 9.965824 ATAAAATGGCTAATCTATCCGTTTTTG 57.034 29.630 13.49 0.00 42.96 2.44
173 174 7.639113 AAATGGCTAATCTATCCGTTTTTGA 57.361 32.000 0.00 0.00 36.08 2.69
174 175 6.619801 ATGGCTAATCTATCCGTTTTTGAC 57.380 37.500 0.00 0.00 0.00 3.18
193 194 5.934935 TGACGGTCAAAATAAAGAAGTCC 57.065 39.130 8.68 0.00 0.00 3.85
194 195 4.449743 TGACGGTCAAAATAAAGAAGTCCG 59.550 41.667 8.68 0.00 40.94 4.79
195 196 3.749609 ACGGTCAAAATAAAGAAGTCCGG 59.250 43.478 0.00 0.00 39.73 5.14
196 197 3.998341 CGGTCAAAATAAAGAAGTCCGGA 59.002 43.478 0.00 0.00 33.20 5.14
197 198 4.634443 CGGTCAAAATAAAGAAGTCCGGAT 59.366 41.667 7.81 0.00 33.20 4.18
198 199 5.123344 CGGTCAAAATAAAGAAGTCCGGATT 59.877 40.000 7.81 0.00 33.20 3.01
199 200 6.314400 CGGTCAAAATAAAGAAGTCCGGATTA 59.686 38.462 7.81 1.43 33.20 1.75
200 201 7.148373 CGGTCAAAATAAAGAAGTCCGGATTAA 60.148 37.037 7.81 0.00 33.20 1.40
201 202 8.182227 GGTCAAAATAAAGAAGTCCGGATTAAG 58.818 37.037 7.81 0.00 0.00 1.85
202 203 7.696872 GTCAAAATAAAGAAGTCCGGATTAAGC 59.303 37.037 7.81 0.00 0.00 3.09
203 204 6.694877 AAATAAAGAAGTCCGGATTAAGCC 57.305 37.500 7.81 0.00 0.00 4.35
204 205 3.713826 AAAGAAGTCCGGATTAAGCCA 57.286 42.857 7.81 0.00 0.00 4.75
205 206 2.693267 AGAAGTCCGGATTAAGCCAC 57.307 50.000 7.81 1.04 0.00 5.01
206 207 1.209747 AGAAGTCCGGATTAAGCCACC 59.790 52.381 7.81 0.00 0.00 4.61
207 208 0.107848 AAGTCCGGATTAAGCCACCG 60.108 55.000 7.81 8.17 45.24 4.94
239 240 5.504853 GGATGGAATATCTCTGGGATTTCC 58.495 45.833 17.45 17.45 39.39 3.13
263 264 0.176219 CGGACGGTATACAAAGGGCA 59.824 55.000 5.01 0.00 0.00 5.36
319 320 3.748868 GCTAAGCTTGCCACTAACTTC 57.251 47.619 9.86 0.00 0.00 3.01
331 332 2.601763 CACTAACTTCGATGCCGGTTAC 59.398 50.000 1.90 0.00 36.24 2.50
389 390 2.415512 GCCACTTGATTACGACCTTCAC 59.584 50.000 0.00 0.00 0.00 3.18
585 599 2.442212 TGCACCGTCGATCTTTGTAA 57.558 45.000 0.00 0.00 0.00 2.41
586 600 2.333926 TGCACCGTCGATCTTTGTAAG 58.666 47.619 0.00 0.00 0.00 2.34
638 652 1.741394 GCATCAGAATTTTGCCCAGCC 60.741 52.381 0.00 0.00 0.00 4.85
640 654 0.114954 TCAGAATTTTGCCCAGCCCT 59.885 50.000 0.00 0.00 0.00 5.19
756 770 3.860717 CGAGCACATGACGCTTGA 58.139 55.556 18.65 0.00 42.57 3.02
758 772 1.010935 CGAGCACATGACGCTTGACT 61.011 55.000 18.65 1.49 42.57 3.41
760 774 1.923204 GAGCACATGACGCTTGACTAG 59.077 52.381 14.14 0.00 40.63 2.57
774 788 5.567552 GCTTGACTAGATAAGCTGCTTTTG 58.432 41.667 21.29 6.35 44.41 2.44
775 789 5.954612 GCTTGACTAGATAAGCTGCTTTTGC 60.955 44.000 21.29 10.10 44.41 3.68
801 815 3.314541 ACTTTAGTAAGTCGGCACAGG 57.685 47.619 0.00 0.00 40.60 4.00
802 816 2.895404 ACTTTAGTAAGTCGGCACAGGA 59.105 45.455 0.00 0.00 40.60 3.86
803 817 3.322828 ACTTTAGTAAGTCGGCACAGGAA 59.677 43.478 0.00 0.00 40.60 3.36
804 818 4.202284 ACTTTAGTAAGTCGGCACAGGAAA 60.202 41.667 0.00 0.00 40.60 3.13
805 819 2.922740 AGTAAGTCGGCACAGGAAAA 57.077 45.000 0.00 0.00 0.00 2.29
806 820 3.202829 AGTAAGTCGGCACAGGAAAAA 57.797 42.857 0.00 0.00 0.00 1.94
807 821 3.751518 AGTAAGTCGGCACAGGAAAAAT 58.248 40.909 0.00 0.00 0.00 1.82
808 822 3.751698 AGTAAGTCGGCACAGGAAAAATC 59.248 43.478 0.00 0.00 0.00 2.17
809 823 1.156736 AGTCGGCACAGGAAAAATCG 58.843 50.000 0.00 0.00 0.00 3.34
810 824 0.454452 GTCGGCACAGGAAAAATCGC 60.454 55.000 0.00 0.00 0.00 4.58
811 825 1.511887 CGGCACAGGAAAAATCGCG 60.512 57.895 0.00 0.00 0.00 5.87
812 826 1.873165 GGCACAGGAAAAATCGCGA 59.127 52.632 13.09 13.09 0.00 5.87
813 827 0.454452 GGCACAGGAAAAATCGCGAC 60.454 55.000 12.93 0.00 0.00 5.19
814 828 0.789383 GCACAGGAAAAATCGCGACG 60.789 55.000 12.93 0.00 0.00 5.12
815 829 0.511221 CACAGGAAAAATCGCGACGT 59.489 50.000 12.93 0.00 0.00 4.34
816 830 0.788391 ACAGGAAAAATCGCGACGTC 59.212 50.000 12.93 5.18 0.00 4.34
817 831 0.246757 CAGGAAAAATCGCGACGTCG 60.247 55.000 32.57 32.57 43.27 5.12
835 849 0.934436 CGCAAGGCAAACGACCAAAG 60.934 55.000 0.00 0.00 0.00 2.77
975 989 2.635915 ACATTACAGGACGAACCCAGAA 59.364 45.455 0.00 0.00 40.05 3.02
993 1007 2.301583 AGAAGGTCAAGAGCTCAAGGAC 59.698 50.000 17.77 18.30 38.35 3.85
1006 1020 2.959030 CTCAAGGACGATACCATGGAGA 59.041 50.000 21.47 6.11 30.75 3.71
1012 1026 1.373497 GATACCATGGAGAGCGGCG 60.373 63.158 21.47 0.51 0.00 6.46
1583 1639 9.299465 TCATGGCAGAAATCATAATGCTAATAA 57.701 29.630 0.00 0.00 38.71 1.40
1652 1730 1.895131 ACGGTTGTACCCTACGAATGT 59.105 47.619 0.00 0.00 33.75 2.71
1660 1738 7.383300 GGTTGTACCCTACGAATGTTGTATATC 59.617 40.741 0.00 0.00 30.04 1.63
1701 1779 2.096811 GTCTCGACTCGATCCGTATCAC 60.097 54.545 0.62 0.00 34.61 3.06
1767 1845 0.913924 TCTCTGCCTGATGCCAATCA 59.086 50.000 0.00 0.00 40.61 2.57
1779 1857 6.211986 CCTGATGCCAATCACCCAATATAATT 59.788 38.462 0.00 0.00 37.91 1.40
1805 1883 3.831112 ACTCGACGAGGTTAAGTAAAGC 58.169 45.455 27.39 0.00 33.35 3.51
1806 1884 2.844804 CTCGACGAGGTTAAGTAAAGCG 59.155 50.000 17.27 0.00 40.61 4.68
1807 1885 2.483877 TCGACGAGGTTAAGTAAAGCGA 59.516 45.455 0.00 0.00 40.61 4.93
1808 1886 3.058293 TCGACGAGGTTAAGTAAAGCGAA 60.058 43.478 0.00 0.00 40.61 4.70
1809 1887 3.058651 CGACGAGGTTAAGTAAAGCGAAC 59.941 47.826 0.00 0.00 40.61 3.95
1810 1888 3.320626 ACGAGGTTAAGTAAAGCGAACC 58.679 45.455 0.00 0.00 41.44 3.62
1811 1889 3.243839 ACGAGGTTAAGTAAAGCGAACCA 60.244 43.478 5.51 0.00 43.20 3.67
1812 1890 3.742369 CGAGGTTAAGTAAAGCGAACCAA 59.258 43.478 5.51 0.00 43.20 3.67
1813 1891 4.376717 CGAGGTTAAGTAAAGCGAACCAAC 60.377 45.833 5.51 0.00 43.20 3.77
1814 1892 3.817084 AGGTTAAGTAAAGCGAACCAACC 59.183 43.478 5.51 9.99 43.20 3.77
1815 1893 3.817084 GGTTAAGTAAAGCGAACCAACCT 59.183 43.478 0.00 0.00 40.91 3.50
1816 1894 4.319984 GGTTAAGTAAAGCGAACCAACCTG 60.320 45.833 0.00 0.00 40.91 4.00
1817 1895 2.632987 AGTAAAGCGAACCAACCTGT 57.367 45.000 0.00 0.00 0.00 4.00
1818 1896 2.218603 AGTAAAGCGAACCAACCTGTG 58.781 47.619 0.00 0.00 0.00 3.66
1819 1897 2.158871 AGTAAAGCGAACCAACCTGTGA 60.159 45.455 0.00 0.00 0.00 3.58
1820 1898 1.981256 AAAGCGAACCAACCTGTGAT 58.019 45.000 0.00 0.00 0.00 3.06
1821 1899 1.981256 AAGCGAACCAACCTGTGATT 58.019 45.000 0.00 0.00 0.00 2.57
1822 1900 1.238439 AGCGAACCAACCTGTGATTG 58.762 50.000 0.00 0.00 0.00 2.67
1831 1909 4.970662 CAACCTGTGATTGGATGGTTAG 57.029 45.455 0.00 0.00 38.76 2.34
1832 1910 4.588899 CAACCTGTGATTGGATGGTTAGA 58.411 43.478 0.00 0.00 38.76 2.10
1833 1911 4.494091 ACCTGTGATTGGATGGTTAGAG 57.506 45.455 0.00 0.00 0.00 2.43
1834 1912 3.200825 ACCTGTGATTGGATGGTTAGAGG 59.799 47.826 0.00 0.00 0.00 3.69
1835 1913 3.434167 CCTGTGATTGGATGGTTAGAGGG 60.434 52.174 0.00 0.00 0.00 4.30
1836 1914 3.455910 CTGTGATTGGATGGTTAGAGGGA 59.544 47.826 0.00 0.00 0.00 4.20
1837 1915 3.199946 TGTGATTGGATGGTTAGAGGGAC 59.800 47.826 0.00 0.00 0.00 4.46
1838 1916 2.777692 TGATTGGATGGTTAGAGGGACC 59.222 50.000 0.00 0.00 37.69 4.46
1839 1917 1.200519 TTGGATGGTTAGAGGGACCG 58.799 55.000 0.00 0.00 40.13 4.79
1840 1918 0.042131 TGGATGGTTAGAGGGACCGT 59.958 55.000 0.00 0.00 40.13 4.83
1841 1919 0.464452 GGATGGTTAGAGGGACCGTG 59.536 60.000 0.00 0.00 40.13 4.94
1842 1920 0.464452 GATGGTTAGAGGGACCGTGG 59.536 60.000 0.00 0.00 40.13 4.94
1843 1921 0.252558 ATGGTTAGAGGGACCGTGGT 60.253 55.000 0.00 0.00 40.13 4.16
1844 1922 0.409092 TGGTTAGAGGGACCGTGGTA 59.591 55.000 0.00 0.00 40.13 3.25
1845 1923 1.007479 TGGTTAGAGGGACCGTGGTAT 59.993 52.381 0.00 0.00 40.13 2.73
1846 1924 2.113807 GGTTAGAGGGACCGTGGTATT 58.886 52.381 0.00 0.00 0.00 1.89
1847 1925 2.502947 GGTTAGAGGGACCGTGGTATTT 59.497 50.000 0.00 0.00 0.00 1.40
1848 1926 3.431346 GGTTAGAGGGACCGTGGTATTTC 60.431 52.174 0.00 0.00 0.00 2.17
1849 1927 1.201424 AGAGGGACCGTGGTATTTCC 58.799 55.000 0.00 0.00 0.00 3.13
1850 1928 0.906775 GAGGGACCGTGGTATTTCCA 59.093 55.000 0.00 0.00 45.01 3.53
1859 1937 2.734755 TGGTATTTCCAGCCCATCAG 57.265 50.000 0.00 0.00 41.93 2.90
1860 1938 1.215173 TGGTATTTCCAGCCCATCAGG 59.785 52.381 0.00 0.00 41.93 3.86
1861 1939 1.494721 GGTATTTCCAGCCCATCAGGA 59.505 52.381 0.00 0.00 34.95 3.86
1862 1940 2.108952 GGTATTTCCAGCCCATCAGGAT 59.891 50.000 0.00 0.00 34.95 3.24
1863 1941 3.437052 GGTATTTCCAGCCCATCAGGATT 60.437 47.826 0.00 0.00 34.95 3.01
1864 1942 2.925966 TTTCCAGCCCATCAGGATTT 57.074 45.000 0.00 0.00 38.24 2.17
1865 1943 4.541250 ATTTCCAGCCCATCAGGATTTA 57.459 40.909 0.00 0.00 38.24 1.40
1866 1944 4.329638 TTTCCAGCCCATCAGGATTTAA 57.670 40.909 0.00 0.00 38.24 1.52
1867 1945 4.329638 TTCCAGCCCATCAGGATTTAAA 57.670 40.909 0.00 0.00 38.24 1.52
1868 1946 4.541250 TCCAGCCCATCAGGATTTAAAT 57.459 40.909 0.00 0.00 38.24 1.40
1869 1947 4.473444 TCCAGCCCATCAGGATTTAAATC 58.527 43.478 18.22 18.22 38.24 2.17
1881 1959 4.818534 GATTTAAATCCTGATGCTCGCA 57.181 40.909 16.05 0.00 0.00 5.10
1882 1960 5.368256 GATTTAAATCCTGATGCTCGCAT 57.632 39.130 16.05 3.70 39.69 4.73
1883 1961 5.766222 GATTTAAATCCTGATGCTCGCATT 58.234 37.500 16.05 0.00 36.70 3.56
1884 1962 5.581126 TTTAAATCCTGATGCTCGCATTT 57.419 34.783 5.79 0.00 36.70 2.32
1885 1963 6.691754 TTTAAATCCTGATGCTCGCATTTA 57.308 33.333 5.79 0.00 36.70 1.40
1886 1964 6.882610 TTAAATCCTGATGCTCGCATTTAT 57.117 33.333 5.79 0.00 36.70 1.40
1887 1965 5.779529 AAATCCTGATGCTCGCATTTATT 57.220 34.783 5.79 1.98 36.70 1.40
1888 1966 5.368256 AATCCTGATGCTCGCATTTATTC 57.632 39.130 5.79 0.00 36.70 1.75
1889 1967 3.141398 TCCTGATGCTCGCATTTATTCC 58.859 45.455 5.79 0.00 36.70 3.01
1890 1968 3.144506 CCTGATGCTCGCATTTATTCCT 58.855 45.455 5.79 0.00 36.70 3.36
1891 1969 3.058432 CCTGATGCTCGCATTTATTCCTG 60.058 47.826 5.79 0.00 36.70 3.86
1892 1970 3.807553 TGATGCTCGCATTTATTCCTGA 58.192 40.909 5.79 0.00 36.70 3.86
1893 1971 4.198530 TGATGCTCGCATTTATTCCTGAA 58.801 39.130 5.79 0.00 36.70 3.02
1894 1972 4.639755 TGATGCTCGCATTTATTCCTGAAA 59.360 37.500 5.79 0.00 36.70 2.69
1895 1973 5.300034 TGATGCTCGCATTTATTCCTGAAAT 59.700 36.000 5.79 0.00 36.70 2.17
1896 1974 5.581126 TGCTCGCATTTATTCCTGAAATT 57.419 34.783 0.00 0.00 0.00 1.82
1897 1975 6.691754 TGCTCGCATTTATTCCTGAAATTA 57.308 33.333 0.00 0.00 0.00 1.40
1898 1976 7.275888 TGCTCGCATTTATTCCTGAAATTAT 57.724 32.000 0.00 0.00 0.00 1.28
1899 1977 7.715657 TGCTCGCATTTATTCCTGAAATTATT 58.284 30.769 0.00 0.00 0.00 1.40
1900 1978 8.196771 TGCTCGCATTTATTCCTGAAATTATTT 58.803 29.630 0.00 0.00 0.00 1.40
1901 1979 8.694394 GCTCGCATTTATTCCTGAAATTATTTC 58.306 33.333 10.47 10.47 40.08 2.17
1902 1980 9.734620 CTCGCATTTATTCCTGAAATTATTTCA 57.265 29.630 17.92 17.92 46.68 2.69
1916 1994 9.787532 TGAAATTATTTCAGGATTTTCGATGAC 57.212 29.630 15.46 0.00 44.21 3.06
1917 1995 8.841444 AAATTATTTCAGGATTTTCGATGACG 57.159 30.769 0.00 0.00 41.26 4.35
1918 1996 3.740044 TTTCAGGATTTTCGATGACGC 57.260 42.857 0.00 0.00 39.58 5.19
1919 1997 1.277326 TCAGGATTTTCGATGACGCG 58.723 50.000 3.53 3.53 39.58 6.01
1920 1998 0.315382 CAGGATTTTCGATGACGCGC 60.315 55.000 5.73 0.00 39.58 6.86
1921 1999 0.739462 AGGATTTTCGATGACGCGCA 60.739 50.000 5.73 5.73 39.58 6.09
1922 2000 0.304705 GGATTTTCGATGACGCGCAT 59.695 50.000 5.73 11.25 40.77 4.73
1923 2001 1.268032 GGATTTTCGATGACGCGCATT 60.268 47.619 5.73 0.00 37.34 3.56
1924 2002 2.029815 GATTTTCGATGACGCGCATTC 58.970 47.619 5.73 3.18 37.34 2.67
1925 2003 0.247106 TTTTCGATGACGCGCATTCG 60.247 50.000 5.73 12.58 37.34 3.34
1926 2004 2.019708 TTTCGATGACGCGCATTCGG 62.020 55.000 20.20 11.98 37.34 4.30
1927 2005 3.254654 CGATGACGCGCATTCGGT 61.255 61.111 5.73 0.00 37.34 4.69
1928 2006 2.321060 GATGACGCGCATTCGGTG 59.679 61.111 5.73 0.00 37.34 4.94
1929 2007 3.155470 GATGACGCGCATTCGGTGG 62.155 63.158 5.73 0.00 37.34 4.61
1934 2012 2.185867 GCGCATTCGGTGGGAGTA 59.814 61.111 0.30 0.00 43.02 2.59
1935 2013 1.883084 GCGCATTCGGTGGGAGTAG 60.883 63.158 0.30 0.00 43.02 2.57
1936 2014 1.813859 CGCATTCGGTGGGAGTAGA 59.186 57.895 0.61 0.00 43.02 2.59
1937 2015 0.527817 CGCATTCGGTGGGAGTAGAC 60.528 60.000 0.61 0.00 43.02 2.59
1938 2016 0.527817 GCATTCGGTGGGAGTAGACG 60.528 60.000 0.00 0.00 0.00 4.18
1939 2017 0.815734 CATTCGGTGGGAGTAGACGT 59.184 55.000 0.00 0.00 0.00 4.34
1940 2018 1.101331 ATTCGGTGGGAGTAGACGTC 58.899 55.000 7.70 7.70 0.00 4.34
1941 2019 0.962356 TTCGGTGGGAGTAGACGTCC 60.962 60.000 13.01 0.00 0.00 4.79
1961 2039 4.261888 GTTGACGACGATGTGCCT 57.738 55.556 0.00 0.00 0.00 4.75
1962 2040 3.411808 GTTGACGACGATGTGCCTA 57.588 52.632 0.00 0.00 0.00 3.93
1963 2041 0.989890 GTTGACGACGATGTGCCTAC 59.010 55.000 0.00 0.00 0.00 3.18
1964 2042 0.455464 TTGACGACGATGTGCCTACG 60.455 55.000 0.00 0.00 0.00 3.51
1965 2043 1.585521 GACGACGATGTGCCTACGG 60.586 63.158 0.00 0.00 0.00 4.02
1966 2044 2.262471 GACGACGATGTGCCTACGGT 62.262 60.000 0.00 0.00 0.00 4.83
1967 2045 1.872234 CGACGATGTGCCTACGGTG 60.872 63.158 0.00 0.00 0.00 4.94
1968 2046 1.509463 GACGATGTGCCTACGGTGA 59.491 57.895 0.00 0.00 0.00 4.02
1969 2047 0.801067 GACGATGTGCCTACGGTGAC 60.801 60.000 0.00 0.00 0.00 3.67
1970 2048 1.248785 ACGATGTGCCTACGGTGACT 61.249 55.000 0.00 0.00 0.00 3.41
1971 2049 0.108804 CGATGTGCCTACGGTGACTT 60.109 55.000 0.00 0.00 0.00 3.01
1972 2050 1.641577 GATGTGCCTACGGTGACTTC 58.358 55.000 0.00 0.00 0.00 3.01
1973 2051 0.108804 ATGTGCCTACGGTGACTTCG 60.109 55.000 0.00 0.00 0.00 3.79
1974 2052 1.288127 GTGCCTACGGTGACTTCGT 59.712 57.895 0.00 0.00 43.64 3.85
1975 2053 0.523072 GTGCCTACGGTGACTTCGTA 59.477 55.000 0.00 0.00 41.38 3.43
1976 2054 1.068333 GTGCCTACGGTGACTTCGTAA 60.068 52.381 0.00 0.00 41.62 3.18
1977 2055 1.612950 TGCCTACGGTGACTTCGTAAA 59.387 47.619 0.00 0.00 41.62 2.01
1978 2056 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
1979 2057 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
1980 2058 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
1981 2059 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
1982 2060 4.925054 CCTACGGTGACTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
1983 2061 5.406175 CCTACGGTGACTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
1984 2062 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
1985 2063 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
1986 2064 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
1987 2065 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
1988 2066 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
1989 2067 7.413000 CGGTGACTTCGTAAATTTCAAGATGAT 60.413 37.037 0.00 0.00 0.00 2.45
1990 2068 8.879759 GGTGACTTCGTAAATTTCAAGATGATA 58.120 33.333 0.00 0.00 0.00 2.15
2021 2099 1.465794 GAAGACACTAGAGGCGTCCT 58.534 55.000 2.06 0.00 36.03 3.85
2031 2109 2.633488 AGAGGCGTCCTGCTTTAAATC 58.367 47.619 2.06 0.00 45.43 2.17
2053 2131 5.043903 TCAATAAAGCTACTCGACAGCATC 58.956 41.667 14.85 0.00 41.66 3.91
2074 2152 5.948742 TCCAAACAAGGTTCAAAAGGAAT 57.051 34.783 0.00 0.00 37.93 3.01
2075 2153 7.441017 CATCCAAACAAGGTTCAAAAGGAATA 58.559 34.615 0.00 0.00 37.93 1.75
2101 2189 2.843701 CCATCCAGGTCAGCAAGTATC 58.156 52.381 0.00 0.00 0.00 2.24
2115 2204 4.088648 GCAAGTATCGCAATACAACACAC 58.911 43.478 0.00 0.00 40.28 3.82
2117 2206 5.673568 GCAAGTATCGCAATACAACACACAT 60.674 40.000 0.00 0.00 40.28 3.21
2145 2234 4.801330 AGCACGCAGGCTTATACATATA 57.199 40.909 0.00 0.00 42.71 0.86
2155 2244 8.616076 GCAGGCTTATACATATATAGCAAAAGG 58.384 37.037 6.73 0.00 0.00 3.11
2156 2245 9.890629 CAGGCTTATACATATATAGCAAAAGGA 57.109 33.333 6.73 0.00 0.00 3.36
2202 2293 1.432807 AGGATGAAGGCCTTCCCAAAA 59.567 47.619 36.75 21.84 39.30 2.44
2216 2307 1.447317 CCAAAACAGCTCAGCCGTGT 61.447 55.000 0.00 0.00 0.00 4.49
2237 2328 3.064324 GCGTCTTGCCTGGCCAAT 61.064 61.111 17.53 0.00 37.76 3.16
2261 2352 2.884012 CTGAGTCATCCTGATACGCTCT 59.116 50.000 0.00 0.00 0.00 4.09
2269 2360 5.594725 TCATCCTGATACGCTCTAAGACTTT 59.405 40.000 0.00 0.00 0.00 2.66
2301 2392 2.190578 CATCGCACTCCTTCCCCC 59.809 66.667 0.00 0.00 0.00 5.40
2309 2400 1.303643 CTCCTTCCCCCAACAGTGC 60.304 63.158 0.00 0.00 0.00 4.40
2377 2468 5.825151 GGATGGTTAGGGAATTTCTTCTCTG 59.175 44.000 0.00 0.00 42.36 3.35
2406 2497 5.738118 TTTTGTTACGAGTCGTCCAAATT 57.262 34.783 28.91 8.91 41.54 1.82
2430 2521 3.835790 AAGCAACGCCCCTACGCAA 62.836 57.895 0.00 0.00 36.19 4.85
2437 2528 3.428282 CCCCTACGCAACGCCAAC 61.428 66.667 0.00 0.00 0.00 3.77
2463 2555 1.351017 CTAGCACTGGACCCTTTTGGA 59.649 52.381 0.00 0.00 44.07 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.419542 TGAAGCTCAAGCAATATAACGAGT 58.580 37.500 4.59 0.00 45.16 4.18
1 2 5.973651 TGAAGCTCAAGCAATATAACGAG 57.026 39.130 4.59 0.00 45.16 4.18
2 3 5.237127 CCATGAAGCTCAAGCAATATAACGA 59.763 40.000 4.59 0.00 45.16 3.85
3 4 5.446709 CCATGAAGCTCAAGCAATATAACG 58.553 41.667 4.59 0.00 45.16 3.18
4 5 5.766222 CCCATGAAGCTCAAGCAATATAAC 58.234 41.667 4.59 0.00 45.16 1.89
5 6 4.279169 GCCCATGAAGCTCAAGCAATATAA 59.721 41.667 4.59 0.00 45.16 0.98
6 7 3.822735 GCCCATGAAGCTCAAGCAATATA 59.177 43.478 4.59 0.00 45.16 0.86
7 8 2.626743 GCCCATGAAGCTCAAGCAATAT 59.373 45.455 4.59 0.00 45.16 1.28
8 9 2.026641 GCCCATGAAGCTCAAGCAATA 58.973 47.619 4.59 0.00 45.16 1.90
9 10 0.822164 GCCCATGAAGCTCAAGCAAT 59.178 50.000 4.59 0.00 45.16 3.56
10 11 0.540133 TGCCCATGAAGCTCAAGCAA 60.540 50.000 4.59 0.00 45.16 3.91
11 12 0.323999 ATGCCCATGAAGCTCAAGCA 60.324 50.000 4.59 0.00 45.16 3.91
12 13 1.683943 TATGCCCATGAAGCTCAAGC 58.316 50.000 8.82 0.00 42.49 4.01
13 14 7.148120 CCTTTATATATGCCCATGAAGCTCAAG 60.148 40.741 8.82 0.00 0.00 3.02
14 15 6.660521 CCTTTATATATGCCCATGAAGCTCAA 59.339 38.462 8.82 0.00 0.00 3.02
15 16 6.012596 TCCTTTATATATGCCCATGAAGCTCA 60.013 38.462 8.82 0.00 0.00 4.26
16 17 6.418101 TCCTTTATATATGCCCATGAAGCTC 58.582 40.000 8.82 0.00 0.00 4.09
17 18 6.012157 ACTCCTTTATATATGCCCATGAAGCT 60.012 38.462 8.82 0.00 0.00 3.74
18 19 6.183347 ACTCCTTTATATATGCCCATGAAGC 58.817 40.000 0.00 0.00 0.00 3.86
19 20 8.321353 TGTACTCCTTTATATATGCCCATGAAG 58.679 37.037 0.00 0.00 0.00 3.02
20 21 8.213489 TGTACTCCTTTATATATGCCCATGAA 57.787 34.615 0.00 0.00 0.00 2.57
21 22 7.806680 TGTACTCCTTTATATATGCCCATGA 57.193 36.000 0.00 0.00 0.00 3.07
22 23 8.267183 TCATGTACTCCTTTATATATGCCCATG 58.733 37.037 0.00 0.00 0.00 3.66
23 24 8.392631 TCATGTACTCCTTTATATATGCCCAT 57.607 34.615 0.00 0.00 0.00 4.00
24 25 7.806680 TCATGTACTCCTTTATATATGCCCA 57.193 36.000 0.00 0.00 0.00 5.36
25 26 8.486210 TGATCATGTACTCCTTTATATATGCCC 58.514 37.037 0.00 0.00 0.00 5.36
33 34 9.775854 CTTCAAGATGATCATGTACTCCTTTAT 57.224 33.333 14.30 0.00 0.00 1.40
34 35 8.762645 ACTTCAAGATGATCATGTACTCCTTTA 58.237 33.333 14.30 0.00 0.00 1.85
35 36 7.628234 ACTTCAAGATGATCATGTACTCCTTT 58.372 34.615 14.30 0.00 0.00 3.11
36 37 7.192852 ACTTCAAGATGATCATGTACTCCTT 57.807 36.000 14.30 6.10 0.00 3.36
37 38 6.805016 ACTTCAAGATGATCATGTACTCCT 57.195 37.500 14.30 0.00 0.00 3.69
38 39 7.492524 TGTACTTCAAGATGATCATGTACTCC 58.507 38.462 22.31 7.29 32.76 3.85
39 40 8.932945 TTGTACTTCAAGATGATCATGTACTC 57.067 34.615 22.31 8.61 32.76 2.59
54 55 4.415881 TCTGCCTTGACTTGTACTTCAA 57.584 40.909 0.00 0.00 34.61 2.69
55 56 4.415881 TTCTGCCTTGACTTGTACTTCA 57.584 40.909 0.00 0.00 0.00 3.02
56 57 4.574828 TGTTTCTGCCTTGACTTGTACTTC 59.425 41.667 0.00 0.00 0.00 3.01
57 58 4.523083 TGTTTCTGCCTTGACTTGTACTT 58.477 39.130 0.00 0.00 0.00 2.24
58 59 4.150897 TGTTTCTGCCTTGACTTGTACT 57.849 40.909 0.00 0.00 0.00 2.73
59 60 4.893424 TTGTTTCTGCCTTGACTTGTAC 57.107 40.909 0.00 0.00 0.00 2.90
60 61 5.277779 CGATTTGTTTCTGCCTTGACTTGTA 60.278 40.000 0.00 0.00 0.00 2.41
61 62 4.498009 CGATTTGTTTCTGCCTTGACTTGT 60.498 41.667 0.00 0.00 0.00 3.16
62 63 3.976942 CGATTTGTTTCTGCCTTGACTTG 59.023 43.478 0.00 0.00 0.00 3.16
63 64 3.632145 ACGATTTGTTTCTGCCTTGACTT 59.368 39.130 0.00 0.00 0.00 3.01
64 65 3.214328 ACGATTTGTTTCTGCCTTGACT 58.786 40.909 0.00 0.00 0.00 3.41
65 66 3.626028 ACGATTTGTTTCTGCCTTGAC 57.374 42.857 0.00 0.00 0.00 3.18
66 67 3.185594 CGTACGATTTGTTTCTGCCTTGA 59.814 43.478 10.44 0.00 0.00 3.02
67 68 3.479006 CGTACGATTTGTTTCTGCCTTG 58.521 45.455 10.44 0.00 0.00 3.61
68 69 2.095919 GCGTACGATTTGTTTCTGCCTT 60.096 45.455 21.65 0.00 0.00 4.35
69 70 1.463444 GCGTACGATTTGTTTCTGCCT 59.537 47.619 21.65 0.00 0.00 4.75
70 71 1.463444 AGCGTACGATTTGTTTCTGCC 59.537 47.619 21.65 0.00 0.00 4.85
71 72 2.875080 AGCGTACGATTTGTTTCTGC 57.125 45.000 21.65 0.00 0.00 4.26
72 73 4.804139 AGGATAGCGTACGATTTGTTTCTG 59.196 41.667 21.65 0.00 0.00 3.02
73 74 5.007385 AGGATAGCGTACGATTTGTTTCT 57.993 39.130 21.65 6.22 0.00 2.52
74 75 6.420008 ACATAGGATAGCGTACGATTTGTTTC 59.580 38.462 21.65 5.59 0.00 2.78
75 76 6.278363 ACATAGGATAGCGTACGATTTGTTT 58.722 36.000 21.65 0.95 0.00 2.83
76 77 5.839621 ACATAGGATAGCGTACGATTTGTT 58.160 37.500 21.65 2.46 0.00 2.83
77 78 5.449107 ACATAGGATAGCGTACGATTTGT 57.551 39.130 21.65 7.65 0.00 2.83
78 79 6.764877 AAACATAGGATAGCGTACGATTTG 57.235 37.500 21.65 7.04 0.00 2.32
79 80 7.781548 AAAAACATAGGATAGCGTACGATTT 57.218 32.000 21.65 8.07 0.00 2.17
101 102 9.557338 AGCGTTGCGTATAATGTTTATTTAAAA 57.443 25.926 0.00 0.00 0.00 1.52
102 103 9.557338 AAGCGTTGCGTATAATGTTTATTTAAA 57.443 25.926 0.00 0.00 0.00 1.52
103 104 9.212687 GAAGCGTTGCGTATAATGTTTATTTAA 57.787 29.630 0.00 0.00 0.00 1.52
104 105 7.851963 GGAAGCGTTGCGTATAATGTTTATTTA 59.148 33.333 0.00 0.00 0.00 1.40
105 106 6.689669 GGAAGCGTTGCGTATAATGTTTATTT 59.310 34.615 0.00 0.00 0.00 1.40
106 107 6.037830 AGGAAGCGTTGCGTATAATGTTTATT 59.962 34.615 0.00 0.00 0.00 1.40
107 108 5.526111 AGGAAGCGTTGCGTATAATGTTTAT 59.474 36.000 0.00 0.00 0.00 1.40
108 109 4.871557 AGGAAGCGTTGCGTATAATGTTTA 59.128 37.500 0.00 0.00 0.00 2.01
109 110 3.687698 AGGAAGCGTTGCGTATAATGTTT 59.312 39.130 0.00 0.00 0.00 2.83
110 111 3.267483 AGGAAGCGTTGCGTATAATGTT 58.733 40.909 0.00 0.00 0.00 2.71
111 112 2.864343 GAGGAAGCGTTGCGTATAATGT 59.136 45.455 0.00 0.00 0.00 2.71
112 113 3.123804 AGAGGAAGCGTTGCGTATAATG 58.876 45.455 0.00 0.00 0.00 1.90
113 114 3.068307 AGAGAGGAAGCGTTGCGTATAAT 59.932 43.478 0.00 0.00 0.00 1.28
114 115 2.426024 AGAGAGGAAGCGTTGCGTATAA 59.574 45.455 0.00 0.00 0.00 0.98
115 116 2.022195 AGAGAGGAAGCGTTGCGTATA 58.978 47.619 0.00 0.00 0.00 1.47
116 117 0.818296 AGAGAGGAAGCGTTGCGTAT 59.182 50.000 0.00 0.00 0.00 3.06
117 118 0.601558 AAGAGAGGAAGCGTTGCGTA 59.398 50.000 0.00 0.00 0.00 4.42
118 119 0.667792 GAAGAGAGGAAGCGTTGCGT 60.668 55.000 0.00 0.00 0.00 5.24
119 120 1.355066 GGAAGAGAGGAAGCGTTGCG 61.355 60.000 0.00 0.00 0.00 4.85
120 121 0.036858 AGGAAGAGAGGAAGCGTTGC 60.037 55.000 0.00 0.00 0.00 4.17
121 122 2.159170 CCTAGGAAGAGAGGAAGCGTTG 60.159 54.545 1.05 0.00 34.46 4.10
122 123 2.104170 CCTAGGAAGAGAGGAAGCGTT 58.896 52.381 1.05 0.00 34.46 4.84
123 124 1.686741 CCCTAGGAAGAGAGGAAGCGT 60.687 57.143 11.48 0.00 34.46 5.07
124 125 1.036707 CCCTAGGAAGAGAGGAAGCG 58.963 60.000 11.48 0.00 34.46 4.68
125 126 0.756294 GCCCTAGGAAGAGAGGAAGC 59.244 60.000 11.48 0.00 34.46 3.86
126 127 2.166907 TGCCCTAGGAAGAGAGGAAG 57.833 55.000 11.48 0.00 34.46 3.46
127 128 2.642171 TTGCCCTAGGAAGAGAGGAA 57.358 50.000 11.48 0.00 34.46 3.36
128 129 2.877154 ATTGCCCTAGGAAGAGAGGA 57.123 50.000 11.48 0.00 34.46 3.71
129 130 5.373812 TTTTATTGCCCTAGGAAGAGAGG 57.626 43.478 11.48 0.00 0.00 3.69
130 131 5.767168 CCATTTTATTGCCCTAGGAAGAGAG 59.233 44.000 11.48 0.00 0.00 3.20
131 132 5.694995 CCATTTTATTGCCCTAGGAAGAGA 58.305 41.667 11.48 0.00 0.00 3.10
132 133 4.279420 GCCATTTTATTGCCCTAGGAAGAG 59.721 45.833 11.48 0.00 0.00 2.85
133 134 4.079212 AGCCATTTTATTGCCCTAGGAAGA 60.079 41.667 11.48 0.00 0.00 2.87
134 135 4.218312 AGCCATTTTATTGCCCTAGGAAG 58.782 43.478 11.48 0.00 0.00 3.46
135 136 4.264373 AGCCATTTTATTGCCCTAGGAA 57.736 40.909 11.48 0.00 0.00 3.36
136 137 3.971468 AGCCATTTTATTGCCCTAGGA 57.029 42.857 11.48 0.00 0.00 2.94
137 138 6.012745 AGATTAGCCATTTTATTGCCCTAGG 58.987 40.000 0.06 0.06 0.00 3.02
138 139 8.814038 ATAGATTAGCCATTTTATTGCCCTAG 57.186 34.615 0.00 0.00 0.00 3.02
139 140 7.834181 GGATAGATTAGCCATTTTATTGCCCTA 59.166 37.037 0.00 0.00 33.51 3.53
140 141 6.665248 GGATAGATTAGCCATTTTATTGCCCT 59.335 38.462 0.00 0.00 33.51 5.19
141 142 6.404734 CGGATAGATTAGCCATTTTATTGCCC 60.405 42.308 0.00 0.00 32.61 5.36
142 143 6.151144 ACGGATAGATTAGCCATTTTATTGCC 59.849 38.462 0.00 0.00 32.61 4.52
143 144 7.145932 ACGGATAGATTAGCCATTTTATTGC 57.854 36.000 0.00 0.00 32.61 3.56
144 145 9.965824 AAAACGGATAGATTAGCCATTTTATTG 57.034 29.630 0.00 0.00 37.78 1.90
146 147 9.965824 CAAAAACGGATAGATTAGCCATTTTAT 57.034 29.630 0.00 0.00 38.48 1.40
147 148 9.179909 TCAAAAACGGATAGATTAGCCATTTTA 57.820 29.630 0.00 0.00 38.48 1.52
148 149 7.973944 GTCAAAAACGGATAGATTAGCCATTTT 59.026 33.333 0.00 0.00 40.77 1.82
149 150 7.480810 GTCAAAAACGGATAGATTAGCCATTT 58.519 34.615 0.00 0.00 30.09 2.32
150 151 7.027778 GTCAAAAACGGATAGATTAGCCATT 57.972 36.000 0.00 0.00 32.61 3.16
151 152 6.619801 GTCAAAAACGGATAGATTAGCCAT 57.380 37.500 0.00 0.00 32.61 4.40
169 170 6.512091 CGGACTTCTTTATTTTGACCGTCAAA 60.512 38.462 20.42 20.42 43.84 2.69
170 171 5.049954 CGGACTTCTTTATTTTGACCGTCAA 60.050 40.000 9.99 9.99 34.03 3.18
171 172 4.449743 CGGACTTCTTTATTTTGACCGTCA 59.550 41.667 0.00 0.00 33.03 4.35
172 173 4.142966 CCGGACTTCTTTATTTTGACCGTC 60.143 45.833 0.00 0.00 35.07 4.79
173 174 3.749609 CCGGACTTCTTTATTTTGACCGT 59.250 43.478 0.00 0.00 35.07 4.83
174 175 3.998341 TCCGGACTTCTTTATTTTGACCG 59.002 43.478 0.00 0.00 36.19 4.79
175 176 6.510879 AATCCGGACTTCTTTATTTTGACC 57.489 37.500 6.12 0.00 0.00 4.02
176 177 7.696872 GCTTAATCCGGACTTCTTTATTTTGAC 59.303 37.037 6.12 0.00 0.00 3.18
177 178 7.148137 GGCTTAATCCGGACTTCTTTATTTTGA 60.148 37.037 6.12 0.00 0.00 2.69
178 179 6.972901 GGCTTAATCCGGACTTCTTTATTTTG 59.027 38.462 6.12 0.00 0.00 2.44
179 180 6.661805 TGGCTTAATCCGGACTTCTTTATTTT 59.338 34.615 6.12 0.00 0.00 1.82
180 181 6.095021 GTGGCTTAATCCGGACTTCTTTATTT 59.905 38.462 6.12 0.00 0.00 1.40
181 182 5.589050 GTGGCTTAATCCGGACTTCTTTATT 59.411 40.000 6.12 0.00 0.00 1.40
182 183 5.123936 GTGGCTTAATCCGGACTTCTTTAT 58.876 41.667 6.12 0.00 0.00 1.40
183 184 4.510571 GTGGCTTAATCCGGACTTCTTTA 58.489 43.478 6.12 0.00 0.00 1.85
184 185 3.344515 GTGGCTTAATCCGGACTTCTTT 58.655 45.455 6.12 0.00 0.00 2.52
185 186 2.355818 GGTGGCTTAATCCGGACTTCTT 60.356 50.000 6.12 0.00 0.00 2.52
186 187 1.209747 GGTGGCTTAATCCGGACTTCT 59.790 52.381 6.12 0.00 0.00 2.85
187 188 1.664873 GGTGGCTTAATCCGGACTTC 58.335 55.000 6.12 0.00 0.00 3.01
188 189 0.107848 CGGTGGCTTAATCCGGACTT 60.108 55.000 6.12 5.26 40.49 3.01
189 190 1.520666 CGGTGGCTTAATCCGGACT 59.479 57.895 6.12 0.00 40.49 3.85
190 191 4.120085 CGGTGGCTTAATCCGGAC 57.880 61.111 6.12 0.00 40.49 4.79
202 203 4.511246 ATCCCATGCTGCCGGTGG 62.511 66.667 1.90 1.37 0.00 4.61
203 204 3.214123 CATCCCATGCTGCCGGTG 61.214 66.667 1.90 0.00 0.00 4.94
204 205 4.511246 CCATCCCATGCTGCCGGT 62.511 66.667 1.90 0.00 0.00 5.28
205 206 2.989173 ATTCCATCCCATGCTGCCGG 62.989 60.000 0.00 0.00 0.00 6.13
206 207 0.250858 TATTCCATCCCATGCTGCCG 60.251 55.000 0.00 0.00 0.00 5.69
207 208 2.097825 GATATTCCATCCCATGCTGCC 58.902 52.381 0.00 0.00 0.00 4.85
208 209 3.015327 GAGATATTCCATCCCATGCTGC 58.985 50.000 0.00 0.00 0.00 5.25
209 210 4.262617 CAGAGATATTCCATCCCATGCTG 58.737 47.826 0.00 0.00 0.00 4.41
289 290 2.288186 GGCAAGCTTAGCCGATAACTTC 59.712 50.000 19.57 0.27 43.15 3.01
308 309 1.429148 CCGGCATCGAAGTTAGTGGC 61.429 60.000 0.00 0.00 39.00 5.01
420 421 2.440409 CCTGCACTAATTCAGGCTGTT 58.560 47.619 15.27 4.93 42.79 3.16
530 531 0.916086 TGGCACGGAAATATCTGGGT 59.084 50.000 0.00 0.00 37.68 4.51
573 587 4.617530 CGTTCCCACTCTTACAAAGATCGA 60.618 45.833 0.00 0.00 36.82 3.59
585 599 2.116772 TCCGTCCGTTCCCACTCT 59.883 61.111 0.00 0.00 0.00 3.24
586 600 1.885163 ATGTCCGTCCGTTCCCACTC 61.885 60.000 0.00 0.00 0.00 3.51
640 654 1.908619 TGAAGAATCTGGTAGCTGCCA 59.091 47.619 23.11 23.11 36.97 4.92
753 767 4.093408 CGCAAAAGCAGCTTATCTAGTCAA 59.907 41.667 8.45 0.00 0.00 3.18
754 768 3.618594 CGCAAAAGCAGCTTATCTAGTCA 59.381 43.478 8.45 0.00 0.00 3.41
756 770 3.861840 TCGCAAAAGCAGCTTATCTAGT 58.138 40.909 8.45 0.00 0.00 2.57
758 772 4.115516 CTCTCGCAAAAGCAGCTTATCTA 58.884 43.478 8.45 0.00 0.00 1.98
760 774 2.932614 TCTCTCGCAAAAGCAGCTTATC 59.067 45.455 8.45 0.00 0.00 1.75
800 814 4.619118 CGACGTCGCGATTTTTCC 57.381 55.556 26.59 0.00 0.00 3.13
810 824 2.127758 GTTTGCCTTGCGACGTCG 60.128 61.111 32.57 32.57 43.27 5.12
811 825 2.127758 CGTTTGCCTTGCGACGTC 60.128 61.111 5.18 5.18 36.49 4.34
812 826 2.586635 TCGTTTGCCTTGCGACGT 60.587 55.556 12.32 0.00 40.02 4.34
813 827 2.127758 GTCGTTTGCCTTGCGACG 60.128 61.111 8.03 8.03 43.91 5.12
815 829 1.377366 TTTGGTCGTTTGCCTTGCGA 61.377 50.000 0.00 0.00 0.00 5.10
816 830 0.934436 CTTTGGTCGTTTGCCTTGCG 60.934 55.000 0.00 0.00 0.00 4.85
817 831 1.215014 GCTTTGGTCGTTTGCCTTGC 61.215 55.000 0.00 0.00 0.00 4.01
818 832 0.597377 GGCTTTGGTCGTTTGCCTTG 60.597 55.000 0.00 0.00 40.36 3.61
819 833 1.739667 GGCTTTGGTCGTTTGCCTT 59.260 52.632 0.00 0.00 40.36 4.35
820 834 2.551912 CGGCTTTGGTCGTTTGCCT 61.552 57.895 0.00 0.00 41.25 4.75
821 835 2.050442 CGGCTTTGGTCGTTTGCC 60.050 61.111 0.00 0.00 40.14 4.52
822 836 2.729491 GCGGCTTTGGTCGTTTGC 60.729 61.111 0.00 0.00 43.14 3.68
823 837 1.370414 CTGCGGCTTTGGTCGTTTG 60.370 57.895 0.00 0.00 43.14 2.93
824 838 3.030652 CTGCGGCTTTGGTCGTTT 58.969 55.556 0.00 0.00 43.14 3.60
825 839 3.660111 GCTGCGGCTTTGGTCGTT 61.660 61.111 11.21 0.00 43.14 3.85
828 842 3.314388 CTTCGCTGCGGCTTTGGTC 62.314 63.158 23.03 0.00 36.09 4.02
829 843 3.357079 CTTCGCTGCGGCTTTGGT 61.357 61.111 23.03 0.00 36.09 3.67
830 844 3.031964 CTCTTCGCTGCGGCTTTGG 62.032 63.158 23.03 0.00 36.09 3.28
831 845 2.477845 CTCTTCGCTGCGGCTTTG 59.522 61.111 23.03 5.08 36.09 2.77
835 849 3.659089 TTACCCTCTTCGCTGCGGC 62.659 63.158 23.03 7.70 0.00 6.53
867 881 0.801067 GATCACGCACTACCGTCCAC 60.801 60.000 0.00 0.00 39.83 4.02
868 882 1.509463 GATCACGCACTACCGTCCA 59.491 57.895 0.00 0.00 39.83 4.02
958 972 1.263356 CCTTCTGGGTTCGTCCTGTA 58.737 55.000 0.30 0.00 36.25 2.74
975 989 0.605589 CGTCCTTGAGCTCTTGACCT 59.394 55.000 16.19 0.00 0.00 3.85
993 1007 1.373497 GCCGCTCTCCATGGTATCG 60.373 63.158 12.58 10.99 0.00 2.92
1006 1020 2.824041 CCATTGCTTACCGCCGCT 60.824 61.111 0.00 0.00 38.05 5.52
1012 1026 1.517039 GCGCTTGCCATTGCTTACC 60.517 57.895 0.00 0.00 38.71 2.85
1309 1329 3.297620 GCCACTGCCACCACCTTG 61.298 66.667 0.00 0.00 0.00 3.61
1328 1360 2.409975 CAAACGTTCTTCCGCTTCCTA 58.590 47.619 0.00 0.00 0.00 2.94
1494 1546 2.034053 CACAGGCGGCTTCAGTTTTTAA 59.966 45.455 9.66 0.00 0.00 1.52
1643 1721 8.334632 TGCAACAATGATATACAACATTCGTAG 58.665 33.333 0.00 0.00 35.01 3.51
1644 1722 8.202745 TGCAACAATGATATACAACATTCGTA 57.797 30.769 0.00 0.00 35.01 3.43
1645 1723 7.082700 TGCAACAATGATATACAACATTCGT 57.917 32.000 0.00 0.00 35.01 3.85
1646 1724 7.644945 ACATGCAACAATGATATACAACATTCG 59.355 33.333 0.00 0.00 35.01 3.34
1652 1730 8.510243 AGAGAACATGCAACAATGATATACAA 57.490 30.769 0.00 0.00 0.00 2.41
1660 1738 4.454847 AGACTGAGAGAACATGCAACAATG 59.545 41.667 0.00 0.00 0.00 2.82
1701 1779 1.953138 GCATCAGCAGATCGACCCG 60.953 63.158 0.00 0.00 41.58 5.28
1767 1845 5.287226 GTCGAGTCGTCAATTATATTGGGT 58.713 41.667 13.12 0.00 0.00 4.51
1779 1857 1.462283 CTTAACCTCGTCGAGTCGTCA 59.538 52.381 20.37 0.00 0.00 4.35
1805 1883 1.890876 TCCAATCACAGGTTGGTTCG 58.109 50.000 8.75 0.00 45.05 3.95
1806 1884 2.493278 CCATCCAATCACAGGTTGGTTC 59.507 50.000 8.75 0.00 45.05 3.62
1807 1885 2.528564 CCATCCAATCACAGGTTGGTT 58.471 47.619 8.75 0.00 45.05 3.67
1808 1886 2.220653 CCATCCAATCACAGGTTGGT 57.779 50.000 8.75 0.00 45.05 3.67
1809 1887 2.220653 ACCATCCAATCACAGGTTGG 57.779 50.000 2.61 2.61 46.76 3.77
1810 1888 4.588899 TCTAACCATCCAATCACAGGTTG 58.411 43.478 0.00 0.00 42.19 3.77
1811 1889 4.324563 CCTCTAACCATCCAATCACAGGTT 60.325 45.833 0.00 0.00 44.23 3.50
1812 1890 3.200825 CCTCTAACCATCCAATCACAGGT 59.799 47.826 0.00 0.00 0.00 4.00
1813 1891 3.434167 CCCTCTAACCATCCAATCACAGG 60.434 52.174 0.00 0.00 0.00 4.00
1814 1892 3.455910 TCCCTCTAACCATCCAATCACAG 59.544 47.826 0.00 0.00 0.00 3.66
1815 1893 3.199946 GTCCCTCTAACCATCCAATCACA 59.800 47.826 0.00 0.00 0.00 3.58
1816 1894 3.433740 GGTCCCTCTAACCATCCAATCAC 60.434 52.174 0.00 0.00 36.75 3.06
1817 1895 2.777692 GGTCCCTCTAACCATCCAATCA 59.222 50.000 0.00 0.00 36.75 2.57
1818 1896 2.224305 CGGTCCCTCTAACCATCCAATC 60.224 54.545 0.00 0.00 36.53 2.67
1819 1897 1.768870 CGGTCCCTCTAACCATCCAAT 59.231 52.381 0.00 0.00 36.53 3.16
1820 1898 1.200519 CGGTCCCTCTAACCATCCAA 58.799 55.000 0.00 0.00 36.53 3.53
1821 1899 0.042131 ACGGTCCCTCTAACCATCCA 59.958 55.000 0.00 0.00 36.53 3.41
1822 1900 0.464452 CACGGTCCCTCTAACCATCC 59.536 60.000 0.00 0.00 36.53 3.51
1823 1901 0.464452 CCACGGTCCCTCTAACCATC 59.536 60.000 0.00 0.00 36.53 3.51
1824 1902 0.252558 ACCACGGTCCCTCTAACCAT 60.253 55.000 0.00 0.00 36.53 3.55
1825 1903 0.409092 TACCACGGTCCCTCTAACCA 59.591 55.000 0.00 0.00 36.53 3.67
1826 1904 1.785647 ATACCACGGTCCCTCTAACC 58.214 55.000 0.00 0.00 0.00 2.85
1827 1905 3.431346 GGAAATACCACGGTCCCTCTAAC 60.431 52.174 0.00 0.00 38.79 2.34
1828 1906 2.767960 GGAAATACCACGGTCCCTCTAA 59.232 50.000 0.00 0.00 38.79 2.10
1829 1907 2.292389 TGGAAATACCACGGTCCCTCTA 60.292 50.000 0.00 0.00 44.64 2.43
1830 1908 1.201424 GGAAATACCACGGTCCCTCT 58.799 55.000 0.00 0.00 38.79 3.69
1831 1909 0.906775 TGGAAATACCACGGTCCCTC 59.093 55.000 0.00 0.00 44.64 4.30
1832 1910 0.909623 CTGGAAATACCACGGTCCCT 59.090 55.000 0.00 0.00 44.64 4.20
1833 1911 0.746923 GCTGGAAATACCACGGTCCC 60.747 60.000 0.00 0.00 44.64 4.46
1834 1912 0.746923 GGCTGGAAATACCACGGTCC 60.747 60.000 0.00 0.00 44.64 4.46
1835 1913 0.746923 GGGCTGGAAATACCACGGTC 60.747 60.000 0.00 0.00 44.64 4.79
1836 1914 1.301954 GGGCTGGAAATACCACGGT 59.698 57.895 0.00 0.00 44.64 4.83
1837 1915 0.106719 ATGGGCTGGAAATACCACGG 60.107 55.000 0.00 0.00 44.64 4.94
1838 1916 1.308998 GATGGGCTGGAAATACCACG 58.691 55.000 0.00 0.00 44.64 4.94
1839 1917 2.301346 CTGATGGGCTGGAAATACCAC 58.699 52.381 0.00 0.00 44.64 4.16
1840 1918 3.170022 TCCTGATGGGCTGGAAATACCA 61.170 50.000 0.00 0.00 46.83 3.25
1841 1919 1.494721 TCCTGATGGGCTGGAAATACC 59.505 52.381 0.00 0.00 41.13 2.73
1842 1920 3.515602 ATCCTGATGGGCTGGAAATAC 57.484 47.619 0.00 0.00 46.16 1.89
1843 1921 4.541250 AAATCCTGATGGGCTGGAAATA 57.459 40.909 0.00 0.00 46.16 1.40
1844 1922 3.409804 AAATCCTGATGGGCTGGAAAT 57.590 42.857 0.00 0.00 46.16 2.17
1845 1923 2.925966 AAATCCTGATGGGCTGGAAA 57.074 45.000 0.00 0.00 46.16 3.13
1846 1924 4.329638 TTTAAATCCTGATGGGCTGGAA 57.670 40.909 0.00 0.00 46.16 3.53
1847 1925 4.473444 GATTTAAATCCTGATGGGCTGGA 58.527 43.478 16.05 0.00 46.94 3.86
1848 1926 4.861102 GATTTAAATCCTGATGGGCTGG 57.139 45.455 16.05 0.00 36.97 4.85
1859 1937 4.217118 ATGCGAGCATCAGGATTTAAATCC 59.783 41.667 31.83 31.83 42.94 3.01
1860 1938 4.818534 TGCGAGCATCAGGATTTAAATC 57.181 40.909 18.22 18.22 33.17 2.17
1861 1939 5.779529 AATGCGAGCATCAGGATTTAAAT 57.220 34.783 11.26 0.00 35.31 1.40
1862 1940 5.581126 AAATGCGAGCATCAGGATTTAAA 57.419 34.783 11.26 0.00 37.66 1.52
1863 1941 6.882610 ATAAATGCGAGCATCAGGATTTAA 57.117 33.333 11.26 0.00 41.16 1.52
1864 1942 6.072508 GGAATAAATGCGAGCATCAGGATTTA 60.073 38.462 11.26 6.42 41.59 1.40
1865 1943 5.278660 GGAATAAATGCGAGCATCAGGATTT 60.279 40.000 11.26 4.40 40.41 2.17
1866 1944 4.217118 GGAATAAATGCGAGCATCAGGATT 59.783 41.667 11.26 8.31 35.31 3.01
1867 1945 3.755378 GGAATAAATGCGAGCATCAGGAT 59.245 43.478 11.26 0.39 35.31 3.24
1868 1946 3.141398 GGAATAAATGCGAGCATCAGGA 58.859 45.455 11.26 0.00 35.31 3.86
1869 1947 3.058432 CAGGAATAAATGCGAGCATCAGG 60.058 47.826 11.26 0.00 35.31 3.86
1870 1948 3.811497 TCAGGAATAAATGCGAGCATCAG 59.189 43.478 11.26 0.00 35.31 2.90
1871 1949 3.807553 TCAGGAATAAATGCGAGCATCA 58.192 40.909 11.26 3.11 35.31 3.07
1872 1950 4.818534 TTCAGGAATAAATGCGAGCATC 57.181 40.909 11.26 0.00 35.31 3.91
1873 1951 5.779529 ATTTCAGGAATAAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
1874 1952 5.581126 AATTTCAGGAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
1875 1953 8.579682 AAATAATTTCAGGAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
1876 1954 9.734620 TGAAATAATTTCAGGAATAAATGCGAG 57.265 29.630 0.00 0.00 44.21 5.03
1890 1968 9.787532 GTCATCGAAAATCCTGAAATAATTTCA 57.212 29.630 0.00 0.00 46.68 2.69
1891 1969 8.947940 CGTCATCGAAAATCCTGAAATAATTTC 58.052 33.333 0.00 0.00 39.71 2.17
1892 1970 7.432252 GCGTCATCGAAAATCCTGAAATAATTT 59.568 33.333 0.00 0.00 39.71 1.82
1893 1971 6.912591 GCGTCATCGAAAATCCTGAAATAATT 59.087 34.615 0.00 0.00 39.71 1.40
1894 1972 6.430451 GCGTCATCGAAAATCCTGAAATAAT 58.570 36.000 0.00 0.00 39.71 1.28
1895 1973 5.501736 CGCGTCATCGAAAATCCTGAAATAA 60.502 40.000 0.00 0.00 39.71 1.40
1896 1974 4.026062 CGCGTCATCGAAAATCCTGAAATA 60.026 41.667 0.00 0.00 39.71 1.40
1897 1975 3.242413 CGCGTCATCGAAAATCCTGAAAT 60.242 43.478 0.00 0.00 39.71 2.17
1898 1976 2.093625 CGCGTCATCGAAAATCCTGAAA 59.906 45.455 0.00 0.00 39.71 2.69
1899 1977 1.658596 CGCGTCATCGAAAATCCTGAA 59.341 47.619 0.00 0.00 39.71 3.02
1900 1978 1.277326 CGCGTCATCGAAAATCCTGA 58.723 50.000 0.00 0.00 39.71 3.86
1901 1979 0.315382 GCGCGTCATCGAAAATCCTG 60.315 55.000 8.43 0.00 39.71 3.86
1902 1980 0.739462 TGCGCGTCATCGAAAATCCT 60.739 50.000 8.43 0.00 39.71 3.24
1903 1981 0.304705 ATGCGCGTCATCGAAAATCC 59.695 50.000 8.43 0.00 39.71 3.01
1904 1982 2.029815 GAATGCGCGTCATCGAAAATC 58.970 47.619 8.43 1.78 39.71 2.17
1905 1983 1.592110 CGAATGCGCGTCATCGAAAAT 60.592 47.619 16.71 3.91 39.71 1.82
1906 1984 0.247106 CGAATGCGCGTCATCGAAAA 60.247 50.000 16.71 0.00 39.71 2.29
1907 1985 1.343484 CGAATGCGCGTCATCGAAA 59.657 52.632 16.71 0.00 39.71 3.46
1908 1986 2.513157 CCGAATGCGCGTCATCGAA 61.513 57.895 21.90 0.00 38.98 3.71
1909 1987 2.954346 CCGAATGCGCGTCATCGA 60.954 61.111 21.90 0.00 38.98 3.59
1910 1988 3.254654 ACCGAATGCGCGTCATCG 61.255 61.111 15.13 15.13 33.40 3.84
1911 1989 2.321060 CACCGAATGCGCGTCATC 59.679 61.111 8.43 0.00 33.40 2.92
1912 1990 3.195002 CCACCGAATGCGCGTCAT 61.195 61.111 8.43 9.21 36.87 3.06
1916 1994 3.709880 TACTCCCACCGAATGCGCG 62.710 63.158 0.00 0.00 35.83 6.86
1917 1995 1.883084 CTACTCCCACCGAATGCGC 60.883 63.158 0.00 0.00 35.83 6.09
1918 1996 0.527817 GTCTACTCCCACCGAATGCG 60.528 60.000 0.00 0.00 37.24 4.73
1919 1997 0.527817 CGTCTACTCCCACCGAATGC 60.528 60.000 0.00 0.00 0.00 3.56
1920 1998 0.815734 ACGTCTACTCCCACCGAATG 59.184 55.000 0.00 0.00 0.00 2.67
1921 1999 1.101331 GACGTCTACTCCCACCGAAT 58.899 55.000 8.70 0.00 0.00 3.34
1922 2000 0.962356 GGACGTCTACTCCCACCGAA 60.962 60.000 16.46 0.00 0.00 4.30
1923 2001 1.377725 GGACGTCTACTCCCACCGA 60.378 63.158 16.46 0.00 0.00 4.69
1924 2002 2.413142 GGGACGTCTACTCCCACCG 61.413 68.421 16.46 0.00 46.30 4.94
1925 2003 3.613527 GGGACGTCTACTCCCACC 58.386 66.667 16.46 1.15 46.30 4.61
1944 2022 0.989890 GTAGGCACATCGTCGTCAAC 59.010 55.000 0.00 0.00 0.00 3.18
1945 2023 0.455464 CGTAGGCACATCGTCGTCAA 60.455 55.000 0.00 0.00 0.00 3.18
1946 2024 1.135939 CGTAGGCACATCGTCGTCA 59.864 57.895 0.00 0.00 0.00 4.35
1947 2025 1.585521 CCGTAGGCACATCGTCGTC 60.586 63.158 0.00 0.00 46.14 4.20
1948 2026 2.488355 CCGTAGGCACATCGTCGT 59.512 61.111 0.00 0.00 46.14 4.34
1960 2038 6.364165 TCTTGAAATTTACGAAGTCACCGTAG 59.636 38.462 0.00 0.00 43.93 3.51
1961 2039 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
1962 2040 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
1963 2041 5.585500 TCTTGAAATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
1964 2042 7.129109 TCATCTTGAAATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02
1998 2076 2.249139 ACGCCTCTAGTGTCTTCCTTT 58.751 47.619 0.00 0.00 32.22 3.11
2008 2086 1.848652 TAAAGCAGGACGCCTCTAGT 58.151 50.000 0.00 0.00 44.04 2.57
2031 2109 4.210120 GGATGCTGTCGAGTAGCTTTATTG 59.790 45.833 18.98 0.00 41.66 1.90
2040 2118 3.325870 CTTGTTTGGATGCTGTCGAGTA 58.674 45.455 0.00 0.00 0.00 2.59
2053 2131 6.041523 TCCTATTCCTTTTGAACCTTGTTTGG 59.958 38.462 0.00 0.00 35.31 3.28
2100 2188 3.142174 TGGAATGTGTGTTGTATTGCGA 58.858 40.909 0.00 0.00 0.00 5.10
2101 2189 3.550950 TGGAATGTGTGTTGTATTGCG 57.449 42.857 0.00 0.00 0.00 4.85
2115 2204 1.010419 GCCTGCGTGCTTTTGGAATG 61.010 55.000 0.00 0.00 0.00 2.67
2117 2206 1.827789 AGCCTGCGTGCTTTTGGAA 60.828 52.632 0.00 0.00 38.85 3.53
2145 2234 3.448660 GGGCTTGTTGATCCTTTTGCTAT 59.551 43.478 0.00 0.00 0.00 2.97
2155 2244 2.827921 AGGTCATTTGGGCTTGTTGATC 59.172 45.455 0.00 0.00 0.00 2.92
2156 2245 2.827921 GAGGTCATTTGGGCTTGTTGAT 59.172 45.455 0.00 0.00 0.00 2.57
2157 2246 2.238521 GAGGTCATTTGGGCTTGTTGA 58.761 47.619 0.00 0.00 0.00 3.18
2192 2281 0.600057 GCTGAGCTGTTTTGGGAAGG 59.400 55.000 0.00 0.00 0.00 3.46
2221 2312 1.926511 GACATTGGCCAGGCAAGACG 61.927 60.000 15.19 6.71 0.00 4.18
2261 2352 3.860641 TGAGCGCATGATGAAAGTCTTA 58.139 40.909 11.47 0.00 0.00 2.10
2269 2360 0.932399 CGATGTTGAGCGCATGATGA 59.068 50.000 11.47 0.00 0.00 2.92
2301 2392 2.183478 TACAGATGTGGGCACTGTTG 57.817 50.000 0.00 0.00 43.27 3.33
2309 2400 5.593909 TGCCATCTATTTTTACAGATGTGGG 59.406 40.000 9.91 0.00 44.38 4.61
2430 2521 1.831736 AGTGCTAGAATAGGTTGGCGT 59.168 47.619 0.00 0.00 39.70 5.68
2437 2528 2.683768 AGGGTCCAGTGCTAGAATAGG 58.316 52.381 0.00 0.00 39.70 2.57
2463 2555 6.404074 GCGGATCTTCTCACTTTGATCAAAAT 60.404 38.462 20.82 9.42 37.60 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.