Multiple sequence alignment - TraesCS6B01G282400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G282400 chr6B 100.000 4691 0 0 1 4691 508818359 508823049 0.000000e+00 8663.0
1 TraesCS6B01G282400 chr6B 94.720 625 25 3 4062 4683 463923571 463922952 0.000000e+00 965.0
2 TraesCS6B01G282400 chr6B 79.433 141 29 0 2018 2158 16554555 16554415 2.990000e-17 100.0
3 TraesCS6B01G282400 chr6D 94.308 3584 118 25 516 4062 315985955 315982421 0.000000e+00 5409.0
4 TraesCS6B01G282400 chr6D 84.426 122 12 7 1551 1670 440679465 440679581 3.840000e-21 113.0
5 TraesCS6B01G282400 chr6A 93.491 3503 150 37 608 4062 453871704 453868232 0.000000e+00 5134.0
6 TraesCS6B01G282400 chr6A 96.907 485 9 5 1 484 604388700 604389179 0.000000e+00 808.0
7 TraesCS6B01G282400 chr6A 96.154 52 2 0 503 554 453874004 453873953 8.360000e-13 86.1
8 TraesCS6B01G282400 chr3B 94.913 629 23 4 4063 4688 479905137 479904515 0.000000e+00 976.0
9 TraesCS6B01G282400 chr3B 94.436 629 28 4 4063 4688 16702089 16702713 0.000000e+00 961.0
10 TraesCS6B01G282400 chr3B 80.851 141 27 0 2018 2158 16704528 16704388 1.380000e-20 111.0
11 TraesCS6B01G282400 chr5B 94.762 630 23 5 4063 4688 628723309 628722686 0.000000e+00 972.0
12 TraesCS6B01G282400 chr5B 90.805 435 36 2 2103 2533 154054242 154054676 3.150000e-161 579.0
13 TraesCS6B01G282400 chr5B 90.345 435 38 2 2103 2533 154015550 154015116 6.810000e-158 568.0
14 TraesCS6B01G282400 chr5B 89.954 219 15 4 213 430 545847171 545846959 4.620000e-70 276.0
15 TraesCS6B01G282400 chr5B 93.151 73 4 1 2768 2840 154054680 154054751 6.420000e-19 106.0
16 TraesCS6B01G282400 chr5B 92.857 70 4 1 2771 2840 154015109 154015041 2.990000e-17 100.0
17 TraesCS6B01G282400 chr3A 94.612 631 25 4 4061 4688 697650955 697650331 0.000000e+00 968.0
18 TraesCS6B01G282400 chr3A 84.426 122 12 7 1551 1670 121988447 121988331 3.840000e-21 113.0
19 TraesCS6B01G282400 chrUn 94.462 632 27 3 4063 4691 7451732 7451106 0.000000e+00 966.0
20 TraesCS6B01G282400 chrUn 84.855 482 42 12 3 483 355359389 355358938 1.540000e-124 457.0
21 TraesCS6B01G282400 chrUn 84.635 384 28 12 101 483 460057438 460057791 2.080000e-93 353.0
22 TraesCS6B01G282400 chr1B 94.295 631 27 5 4063 4689 271741465 271742090 0.000000e+00 957.0
23 TraesCS6B01G282400 chr2B 94.146 632 30 3 4063 4691 225109108 225108481 0.000000e+00 955.0
24 TraesCS6B01G282400 chr2B 94.146 632 28 4 4063 4691 186290604 186289979 0.000000e+00 953.0
25 TraesCS6B01G282400 chr7B 94.758 496 21 5 2 494 663048874 663049367 0.000000e+00 767.0
26 TraesCS6B01G282400 chr7B 89.885 435 40 2 2103 2533 715318874 715319308 1.470000e-154 556.0
27 TraesCS6B01G282400 chr7B 84.647 482 43 12 3 483 611240995 611240544 7.160000e-123 451.0
28 TraesCS6B01G282400 chr7B 93.151 73 4 1 2768 2840 715319312 715319383 6.420000e-19 106.0
29 TraesCS6B01G282400 chr1D 90.022 461 41 4 1 457 137648495 137648954 4.040000e-165 592.0
30 TraesCS6B01G282400 chr7D 93.931 379 20 2 2 379 500836000 500836376 1.890000e-158 569.0
31 TraesCS6B01G282400 chr7D 89.423 104 8 2 380 483 570682072 570682172 1.370000e-25 128.0
32 TraesCS6B01G282400 chr2D 88.791 455 45 5 1 450 143601660 143602113 1.910000e-153 553.0
33 TraesCS6B01G282400 chr2D 89.247 372 29 7 1 363 36129811 36129442 5.530000e-124 455.0
34 TraesCS6B01G282400 chr7A 83.537 164 22 3 2236 2395 689329215 689329377 1.050000e-31 148.0
35 TraesCS6B01G282400 chr7A 84.426 122 12 7 1551 1670 407540600 407540716 3.840000e-21 113.0
36 TraesCS6B01G282400 chr1A 92.381 105 7 1 380 484 522201003 522200900 1.050000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G282400 chr6B 508818359 508823049 4690 False 8663.00 8663 100.0000 1 4691 1 chr6B.!!$F1 4690
1 TraesCS6B01G282400 chr6B 463922952 463923571 619 True 965.00 965 94.7200 4062 4683 1 chr6B.!!$R2 621
2 TraesCS6B01G282400 chr6D 315982421 315985955 3534 True 5409.00 5409 94.3080 516 4062 1 chr6D.!!$R1 3546
3 TraesCS6B01G282400 chr6A 453868232 453874004 5772 True 2610.05 5134 94.8225 503 4062 2 chr6A.!!$R1 3559
4 TraesCS6B01G282400 chr3B 479904515 479905137 622 True 976.00 976 94.9130 4063 4688 1 chr3B.!!$R2 625
5 TraesCS6B01G282400 chr3B 16702089 16702713 624 False 961.00 961 94.4360 4063 4688 1 chr3B.!!$F1 625
6 TraesCS6B01G282400 chr5B 628722686 628723309 623 True 972.00 972 94.7620 4063 4688 1 chr5B.!!$R2 625
7 TraesCS6B01G282400 chr5B 154054242 154054751 509 False 342.50 579 91.9780 2103 2840 2 chr5B.!!$F1 737
8 TraesCS6B01G282400 chr5B 154015041 154015550 509 True 334.00 568 91.6010 2103 2840 2 chr5B.!!$R3 737
9 TraesCS6B01G282400 chr3A 697650331 697650955 624 True 968.00 968 94.6120 4061 4688 1 chr3A.!!$R2 627
10 TraesCS6B01G282400 chrUn 7451106 7451732 626 True 966.00 966 94.4620 4063 4691 1 chrUn.!!$R1 628
11 TraesCS6B01G282400 chr1B 271741465 271742090 625 False 957.00 957 94.2950 4063 4689 1 chr1B.!!$F1 626
12 TraesCS6B01G282400 chr2B 225108481 225109108 627 True 955.00 955 94.1460 4063 4691 1 chr2B.!!$R2 628
13 TraesCS6B01G282400 chr2B 186289979 186290604 625 True 953.00 953 94.1460 4063 4691 1 chr2B.!!$R1 628
14 TraesCS6B01G282400 chr7B 715318874 715319383 509 False 331.00 556 91.5180 2103 2840 2 chr7B.!!$F2 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.034670 GCTGTTGGAGGAGGAAGCAT 60.035 55.0 0.00 0.00 0.00 3.79 F
295 296 0.038618 GTGGGAAACGGCAATTCCAC 60.039 55.0 17.16 7.97 46.69 4.02 F
296 297 0.178975 TGGGAAACGGCAATTCCACT 60.179 50.0 17.16 0.00 46.69 4.00 F
1160 3375 0.462759 CTCCTCCTTCGCCAATGGAC 60.463 60.0 2.05 0.00 0.00 4.02 F
1362 3577 0.552848 TGATCCCCAGGATTGCTTCC 59.447 55.0 0.00 0.00 43.27 3.46 F
1406 3621 0.731514 TTGGACAACGATCGCGAGTC 60.732 55.0 16.66 19.01 41.59 3.36 F
2779 5011 0.671251 GTGACCGTGCAATTTGGGAA 59.329 50.0 0.00 0.00 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1160 3375 0.021610 CACGAAGCGTAACGTAAGCG 59.978 55.000 0.00 0.0 38.32 4.68 R
1418 3635 1.153823 GCTTCGAGACGCTAAGCCA 60.154 57.895 4.39 0.0 39.74 4.75 R
2025 4245 2.199652 CGCACCAAAGGGCCTTCAA 61.200 57.895 21.20 0.0 37.90 2.69 R
2604 4828 2.542411 GCTGGGCTATTTCTGCATTTCG 60.542 50.000 0.00 0.0 0.00 3.46 R
2605 4829 2.692041 AGCTGGGCTATTTCTGCATTTC 59.308 45.455 0.00 0.0 36.99 2.17 R
2986 5218 3.508845 AGCTTTAGGAAAACAGCTCCA 57.491 42.857 0.00 0.0 35.20 3.86 R
3930 6191 1.295792 CACACACACACACCCTACAC 58.704 55.000 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.277857 TCTATCACAAAACCTAGCTAGCC 57.722 43.478 15.74 0.00 0.00 3.93
24 25 2.781681 TCACAAAACCTAGCTAGCCC 57.218 50.000 15.74 0.00 0.00 5.19
25 26 1.280998 TCACAAAACCTAGCTAGCCCC 59.719 52.381 15.74 0.00 0.00 5.80
26 27 0.252197 ACAAAACCTAGCTAGCCCCG 59.748 55.000 15.74 4.23 0.00 5.73
27 28 0.463833 CAAAACCTAGCTAGCCCCGG 60.464 60.000 15.74 11.88 0.00 5.73
28 29 1.632965 AAAACCTAGCTAGCCCCGGG 61.633 60.000 15.80 15.80 0.00 5.73
29 30 2.540842 AAACCTAGCTAGCCCCGGGA 62.541 60.000 26.32 0.00 0.00 5.14
30 31 2.120718 CCTAGCTAGCCCCGGGAT 59.879 66.667 26.32 13.39 0.00 3.85
31 32 2.286523 CCTAGCTAGCCCCGGGATG 61.287 68.421 26.32 7.36 0.00 3.51
32 33 1.228894 CTAGCTAGCCCCGGGATGA 60.229 63.158 26.32 4.82 0.00 2.92
33 34 0.616111 CTAGCTAGCCCCGGGATGAT 60.616 60.000 26.32 7.57 0.00 2.45
34 35 0.904865 TAGCTAGCCCCGGGATGATG 60.905 60.000 26.32 5.49 0.00 3.07
35 36 2.217038 GCTAGCCCCGGGATGATGA 61.217 63.158 26.32 0.00 0.00 2.92
36 37 1.768684 GCTAGCCCCGGGATGATGAA 61.769 60.000 26.32 0.00 0.00 2.57
37 38 0.987294 CTAGCCCCGGGATGATGAAT 59.013 55.000 26.32 0.00 0.00 2.57
38 39 0.984230 TAGCCCCGGGATGATGAATC 59.016 55.000 26.32 0.00 34.19 2.52
39 40 1.061905 AGCCCCGGGATGATGAATCA 61.062 55.000 26.32 0.00 41.70 2.57
40 41 0.178992 GCCCCGGGATGATGAATCAA 60.179 55.000 26.32 0.00 40.69 2.57
41 42 1.901591 CCCCGGGATGATGAATCAAG 58.098 55.000 26.32 0.00 40.69 3.02
42 43 1.421268 CCCCGGGATGATGAATCAAGA 59.579 52.381 26.32 0.00 40.69 3.02
43 44 2.158623 CCCCGGGATGATGAATCAAGAA 60.159 50.000 26.32 0.00 40.69 2.52
44 45 3.144506 CCCGGGATGATGAATCAAGAAG 58.855 50.000 18.48 0.00 40.69 2.85
45 46 3.181451 CCCGGGATGATGAATCAAGAAGA 60.181 47.826 18.48 0.00 40.69 2.87
46 47 4.506271 CCCGGGATGATGAATCAAGAAGAT 60.506 45.833 18.48 0.00 40.69 2.40
47 48 4.454847 CCGGGATGATGAATCAAGAAGATG 59.545 45.833 0.00 0.00 40.69 2.90
48 49 4.083431 CGGGATGATGAATCAAGAAGATGC 60.083 45.833 0.00 0.00 40.69 3.91
49 50 5.071370 GGGATGATGAATCAAGAAGATGCT 58.929 41.667 0.00 0.00 40.69 3.79
50 51 5.535406 GGGATGATGAATCAAGAAGATGCTT 59.465 40.000 0.00 0.00 40.69 3.91
51 52 6.713903 GGGATGATGAATCAAGAAGATGCTTA 59.286 38.462 0.00 0.00 40.69 3.09
52 53 7.308469 GGGATGATGAATCAAGAAGATGCTTAC 60.308 40.741 0.00 0.00 40.69 2.34
53 54 6.932356 TGATGAATCAAGAAGATGCTTACC 57.068 37.500 0.00 0.00 36.96 2.85
54 55 6.656902 TGATGAATCAAGAAGATGCTTACCT 58.343 36.000 0.00 0.00 36.96 3.08
55 56 6.541278 TGATGAATCAAGAAGATGCTTACCTG 59.459 38.462 0.00 0.00 36.96 4.00
56 57 5.809001 TGAATCAAGAAGATGCTTACCTGT 58.191 37.500 0.00 0.00 36.96 4.00
57 58 6.240894 TGAATCAAGAAGATGCTTACCTGTT 58.759 36.000 0.00 0.00 36.96 3.16
58 59 6.372659 TGAATCAAGAAGATGCTTACCTGTTC 59.627 38.462 0.00 0.00 36.96 3.18
59 60 5.489792 TCAAGAAGATGCTTACCTGTTCT 57.510 39.130 0.00 0.00 0.00 3.01
60 61 5.240891 TCAAGAAGATGCTTACCTGTTCTG 58.759 41.667 0.00 0.00 0.00 3.02
61 62 4.899352 AGAAGATGCTTACCTGTTCTGT 57.101 40.909 0.00 0.00 0.00 3.41
62 63 5.234466 AGAAGATGCTTACCTGTTCTGTT 57.766 39.130 0.00 0.00 0.00 3.16
63 64 4.999950 AGAAGATGCTTACCTGTTCTGTTG 59.000 41.667 0.00 0.00 0.00 3.33
64 65 4.357918 AGATGCTTACCTGTTCTGTTGT 57.642 40.909 0.00 0.00 0.00 3.32
65 66 4.718961 AGATGCTTACCTGTTCTGTTGTT 58.281 39.130 0.00 0.00 0.00 2.83
66 67 4.757149 AGATGCTTACCTGTTCTGTTGTTC 59.243 41.667 0.00 0.00 0.00 3.18
67 68 3.879998 TGCTTACCTGTTCTGTTGTTCA 58.120 40.909 0.00 0.00 0.00 3.18
68 69 4.265893 TGCTTACCTGTTCTGTTGTTCAA 58.734 39.130 0.00 0.00 0.00 2.69
69 70 4.335315 TGCTTACCTGTTCTGTTGTTCAAG 59.665 41.667 0.00 0.00 0.00 3.02
70 71 4.574828 GCTTACCTGTTCTGTTGTTCAAGA 59.425 41.667 0.00 0.00 0.00 3.02
71 72 5.504173 GCTTACCTGTTCTGTTGTTCAAGAC 60.504 44.000 0.00 0.00 0.00 3.01
72 73 4.222124 ACCTGTTCTGTTGTTCAAGACT 57.778 40.909 0.00 0.00 0.00 3.24
73 74 3.941483 ACCTGTTCTGTTGTTCAAGACTG 59.059 43.478 0.00 0.00 0.00 3.51
74 75 3.242870 CCTGTTCTGTTGTTCAAGACTGC 60.243 47.826 0.00 0.00 0.00 4.40
75 76 2.682856 TGTTCTGTTGTTCAAGACTGCC 59.317 45.455 0.00 0.00 0.00 4.85
76 77 2.945668 GTTCTGTTGTTCAAGACTGCCT 59.054 45.455 0.00 0.00 0.00 4.75
77 78 2.564771 TCTGTTGTTCAAGACTGCCTG 58.435 47.619 0.00 0.00 0.00 4.85
78 79 2.092968 TCTGTTGTTCAAGACTGCCTGT 60.093 45.455 0.00 0.00 0.00 4.00
79 80 2.288666 TGTTGTTCAAGACTGCCTGTC 58.711 47.619 0.00 0.00 45.67 3.51
88 89 2.503061 CTGCCTGTCAGGATCGGG 59.497 66.667 23.77 3.13 37.67 5.14
89 90 3.083349 TGCCTGTCAGGATCGGGG 61.083 66.667 23.77 0.00 37.67 5.73
90 91 3.866582 GCCTGTCAGGATCGGGGG 61.867 72.222 23.77 0.00 37.67 5.40
91 92 2.365635 CCTGTCAGGATCGGGGGT 60.366 66.667 14.26 0.00 37.67 4.95
92 93 2.735772 CCTGTCAGGATCGGGGGTG 61.736 68.421 14.26 0.00 37.67 4.61
93 94 1.990060 CTGTCAGGATCGGGGGTGT 60.990 63.158 0.00 0.00 0.00 4.16
94 95 1.537889 TGTCAGGATCGGGGGTGTT 60.538 57.895 0.00 0.00 0.00 3.32
95 96 1.078426 GTCAGGATCGGGGGTGTTG 60.078 63.158 0.00 0.00 0.00 3.33
96 97 1.537889 TCAGGATCGGGGGTGTTGT 60.538 57.895 0.00 0.00 0.00 3.32
97 98 1.131303 TCAGGATCGGGGGTGTTGTT 61.131 55.000 0.00 0.00 0.00 2.83
98 99 0.616371 CAGGATCGGGGGTGTTGTTA 59.384 55.000 0.00 0.00 0.00 2.41
99 100 0.616891 AGGATCGGGGGTGTTGTTAC 59.383 55.000 0.00 0.00 0.00 2.50
100 101 0.616891 GGATCGGGGGTGTTGTTACT 59.383 55.000 0.00 0.00 0.00 2.24
101 102 1.406477 GGATCGGGGGTGTTGTTACTC 60.406 57.143 0.00 0.00 0.00 2.59
102 103 0.616891 ATCGGGGGTGTTGTTACTCC 59.383 55.000 0.00 0.00 40.67 3.85
103 104 0.472352 TCGGGGGTGTTGTTACTCCT 60.472 55.000 0.00 0.00 41.18 3.69
104 105 0.321298 CGGGGGTGTTGTTACTCCTG 60.321 60.000 0.00 0.00 41.18 3.86
105 106 0.769247 GGGGGTGTTGTTACTCCTGT 59.231 55.000 0.00 0.00 41.18 4.00
106 107 1.271217 GGGGGTGTTGTTACTCCTGTC 60.271 57.143 0.00 0.00 41.18 3.51
107 108 1.271217 GGGGTGTTGTTACTCCTGTCC 60.271 57.143 0.00 0.00 38.23 4.02
108 109 1.418637 GGGTGTTGTTACTCCTGTCCA 59.581 52.381 0.00 0.00 37.90 4.02
109 110 2.158726 GGGTGTTGTTACTCCTGTCCAA 60.159 50.000 0.00 0.00 37.90 3.53
110 111 2.876550 GGTGTTGTTACTCCTGTCCAAC 59.123 50.000 0.00 0.00 38.02 3.77
111 112 2.542595 GTGTTGTTACTCCTGTCCAACG 59.457 50.000 0.00 0.00 39.22 4.10
112 113 2.431419 TGTTGTTACTCCTGTCCAACGA 59.569 45.455 0.00 0.00 39.22 3.85
113 114 3.118702 TGTTGTTACTCCTGTCCAACGAA 60.119 43.478 0.00 0.00 39.22 3.85
114 115 3.102052 TGTTACTCCTGTCCAACGAAC 57.898 47.619 0.00 0.00 0.00 3.95
115 116 2.431419 TGTTACTCCTGTCCAACGAACA 59.569 45.455 0.00 0.00 0.00 3.18
116 117 3.070446 TGTTACTCCTGTCCAACGAACAT 59.930 43.478 0.00 0.00 0.00 2.71
117 118 2.169832 ACTCCTGTCCAACGAACATG 57.830 50.000 0.00 0.00 0.00 3.21
118 119 1.691976 ACTCCTGTCCAACGAACATGA 59.308 47.619 0.00 0.00 0.00 3.07
119 120 2.104111 ACTCCTGTCCAACGAACATGAA 59.896 45.455 0.00 0.00 0.00 2.57
120 121 3.138304 CTCCTGTCCAACGAACATGAAA 58.862 45.455 0.00 0.00 0.00 2.69
121 122 3.750371 TCCTGTCCAACGAACATGAAAT 58.250 40.909 0.00 0.00 0.00 2.17
122 123 3.751175 TCCTGTCCAACGAACATGAAATC 59.249 43.478 0.00 0.00 0.00 2.17
123 124 3.501828 CCTGTCCAACGAACATGAAATCA 59.498 43.478 0.00 0.00 0.00 2.57
124 125 4.156556 CCTGTCCAACGAACATGAAATCAT 59.843 41.667 0.00 0.00 36.96 2.45
125 126 5.295431 TGTCCAACGAACATGAAATCATC 57.705 39.130 0.00 0.00 33.61 2.92
126 127 4.155826 TGTCCAACGAACATGAAATCATCC 59.844 41.667 0.00 0.00 33.61 3.51
127 128 3.373748 TCCAACGAACATGAAATCATCCG 59.626 43.478 0.00 1.22 33.61 4.18
128 129 3.373748 CCAACGAACATGAAATCATCCGA 59.626 43.478 0.00 0.00 33.61 4.55
129 130 4.494690 CCAACGAACATGAAATCATCCGAG 60.495 45.833 0.00 7.43 33.61 4.63
130 131 2.609459 ACGAACATGAAATCATCCGAGC 59.391 45.455 0.00 0.00 33.61 5.03
131 132 2.032549 CGAACATGAAATCATCCGAGCC 60.033 50.000 0.00 0.00 33.61 4.70
132 133 1.586422 ACATGAAATCATCCGAGCCG 58.414 50.000 0.00 0.00 33.61 5.52
133 134 0.236711 CATGAAATCATCCGAGCCGC 59.763 55.000 0.00 0.00 33.61 6.53
134 135 0.107456 ATGAAATCATCCGAGCCGCT 59.893 50.000 0.00 0.00 28.78 5.52
135 136 0.811219 TGAAATCATCCGAGCCGCTG 60.811 55.000 0.00 0.00 0.00 5.18
136 137 0.811616 GAAATCATCCGAGCCGCTGT 60.812 55.000 0.00 0.00 0.00 4.40
137 138 0.392998 AAATCATCCGAGCCGCTGTT 60.393 50.000 0.00 0.00 0.00 3.16
138 139 1.091771 AATCATCCGAGCCGCTGTTG 61.092 55.000 0.00 0.00 0.00 3.33
139 140 2.930385 ATCATCCGAGCCGCTGTTGG 62.930 60.000 0.00 0.00 0.00 3.77
140 141 3.390521 ATCCGAGCCGCTGTTGGA 61.391 61.111 0.00 2.54 0.00 3.53
141 142 3.376935 ATCCGAGCCGCTGTTGGAG 62.377 63.158 0.00 0.00 31.10 3.86
143 144 4.069232 CGAGCCGCTGTTGGAGGA 62.069 66.667 0.00 0.00 37.02 3.71
144 145 2.125350 GAGCCGCTGTTGGAGGAG 60.125 66.667 0.00 0.00 37.02 3.69
145 146 3.672295 GAGCCGCTGTTGGAGGAGG 62.672 68.421 0.00 0.00 37.02 4.30
146 147 3.706373 GCCGCTGTTGGAGGAGGA 61.706 66.667 0.00 0.00 37.02 3.71
147 148 3.068881 CCGCTGTTGGAGGAGGAA 58.931 61.111 0.00 0.00 37.02 3.36
148 149 1.078848 CCGCTGTTGGAGGAGGAAG 60.079 63.158 0.00 0.00 37.02 3.46
149 150 1.743252 CGCTGTTGGAGGAGGAAGC 60.743 63.158 0.00 0.00 0.00 3.86
150 151 1.376466 GCTGTTGGAGGAGGAAGCA 59.624 57.895 0.00 0.00 0.00 3.91
151 152 0.034670 GCTGTTGGAGGAGGAAGCAT 60.035 55.000 0.00 0.00 0.00 3.79
152 153 2.016096 GCTGTTGGAGGAGGAAGCATC 61.016 57.143 0.00 0.00 0.00 3.91
153 154 0.250234 TGTTGGAGGAGGAAGCATCG 59.750 55.000 0.00 0.00 0.00 3.84
154 155 0.462759 GTTGGAGGAGGAAGCATCGG 60.463 60.000 0.00 0.00 0.00 4.18
155 156 0.909610 TTGGAGGAGGAAGCATCGGT 60.910 55.000 0.00 0.00 0.00 4.69
156 157 1.144936 GGAGGAGGAAGCATCGGTG 59.855 63.158 0.00 0.00 0.00 4.94
157 158 1.330655 GGAGGAGGAAGCATCGGTGA 61.331 60.000 0.00 0.00 0.00 4.02
158 159 0.103937 GAGGAGGAAGCATCGGTGAG 59.896 60.000 0.00 0.00 0.00 3.51
159 160 1.144936 GGAGGAAGCATCGGTGAGG 59.855 63.158 0.00 0.00 0.00 3.86
160 161 1.330655 GGAGGAAGCATCGGTGAGGA 61.331 60.000 0.00 0.00 0.00 3.71
161 162 0.755686 GAGGAAGCATCGGTGAGGAT 59.244 55.000 0.00 0.00 0.00 3.24
162 163 1.139853 GAGGAAGCATCGGTGAGGATT 59.860 52.381 0.00 0.00 0.00 3.01
163 164 1.139853 AGGAAGCATCGGTGAGGATTC 59.860 52.381 0.00 1.27 37.89 2.52
164 165 1.587547 GAAGCATCGGTGAGGATTCC 58.412 55.000 0.00 0.00 33.56 3.01
165 166 0.179073 AAGCATCGGTGAGGATTCCG 60.179 55.000 0.00 0.00 46.93 4.30
166 167 2.247437 GCATCGGTGAGGATTCCGC 61.247 63.158 0.00 0.00 45.44 5.54
167 168 1.951130 CATCGGTGAGGATTCCGCG 60.951 63.158 0.00 0.00 45.44 6.46
168 169 3.151958 ATCGGTGAGGATTCCGCGG 62.152 63.158 22.12 22.12 45.44 6.46
169 170 4.891727 CGGTGAGGATTCCGCGGG 62.892 72.222 27.83 6.80 40.28 6.13
170 171 3.467226 GGTGAGGATTCCGCGGGA 61.467 66.667 27.83 20.01 0.00 5.14
171 172 2.107141 GTGAGGATTCCGCGGGAG 59.893 66.667 27.83 0.00 31.21 4.30
172 173 3.154473 TGAGGATTCCGCGGGAGG 61.154 66.667 27.83 0.00 31.21 4.30
173 174 2.838225 GAGGATTCCGCGGGAGGA 60.838 66.667 27.83 9.69 38.79 3.71
174 175 2.122813 AGGATTCCGCGGGAGGAT 60.123 61.111 27.83 14.36 40.48 3.24
175 176 2.031163 GGATTCCGCGGGAGGATG 59.969 66.667 27.83 0.00 40.48 3.51
176 177 2.666526 GATTCCGCGGGAGGATGC 60.667 66.667 27.83 4.28 40.48 3.91
177 178 3.164269 ATTCCGCGGGAGGATGCT 61.164 61.111 27.83 0.00 40.48 3.79
178 179 3.466791 ATTCCGCGGGAGGATGCTG 62.467 63.158 27.83 0.00 40.48 4.41
203 204 2.335369 GCGAGTCGGGCGTGATAT 59.665 61.111 15.52 0.00 0.00 1.63
204 205 2.016704 GCGAGTCGGGCGTGATATG 61.017 63.158 15.52 0.00 0.00 1.78
205 206 2.016704 CGAGTCGGGCGTGATATGC 61.017 63.158 4.10 0.00 0.00 3.14
206 207 2.016704 GAGTCGGGCGTGATATGCG 61.017 63.158 0.00 0.00 0.00 4.73
214 215 3.588277 CGTGATATGCGCCTAGGTT 57.412 52.632 11.31 0.00 0.00 3.50
215 216 2.717580 CGTGATATGCGCCTAGGTTA 57.282 50.000 11.31 0.00 0.00 2.85
216 217 3.232213 CGTGATATGCGCCTAGGTTAT 57.768 47.619 11.31 5.29 0.00 1.89
217 218 3.585862 CGTGATATGCGCCTAGGTTATT 58.414 45.455 11.31 0.00 0.00 1.40
218 219 3.994392 CGTGATATGCGCCTAGGTTATTT 59.006 43.478 11.31 0.00 0.00 1.40
219 220 4.451096 CGTGATATGCGCCTAGGTTATTTT 59.549 41.667 11.31 0.00 0.00 1.82
220 221 5.614668 CGTGATATGCGCCTAGGTTATTTTG 60.615 44.000 11.31 0.00 0.00 2.44
221 222 5.468746 GTGATATGCGCCTAGGTTATTTTGA 59.531 40.000 11.31 0.00 0.00 2.69
222 223 5.700832 TGATATGCGCCTAGGTTATTTTGAG 59.299 40.000 11.31 0.00 0.00 3.02
223 224 2.639065 TGCGCCTAGGTTATTTTGAGG 58.361 47.619 11.31 0.00 0.00 3.86
224 225 1.947456 GCGCCTAGGTTATTTTGAGGG 59.053 52.381 11.31 0.00 0.00 4.30
225 226 2.420967 GCGCCTAGGTTATTTTGAGGGA 60.421 50.000 11.31 0.00 0.00 4.20
226 227 3.747708 GCGCCTAGGTTATTTTGAGGGAT 60.748 47.826 11.31 0.00 0.00 3.85
227 228 4.461198 CGCCTAGGTTATTTTGAGGGATT 58.539 43.478 11.31 0.00 0.00 3.01
228 229 4.275936 CGCCTAGGTTATTTTGAGGGATTG 59.724 45.833 11.31 0.00 0.00 2.67
229 230 4.584743 GCCTAGGTTATTTTGAGGGATTGG 59.415 45.833 11.31 0.00 0.00 3.16
230 231 5.766590 CCTAGGTTATTTTGAGGGATTGGT 58.233 41.667 0.00 0.00 0.00 3.67
231 232 6.194967 CCTAGGTTATTTTGAGGGATTGGTT 58.805 40.000 0.00 0.00 0.00 3.67
232 233 6.667848 CCTAGGTTATTTTGAGGGATTGGTTT 59.332 38.462 0.00 0.00 0.00 3.27
233 234 6.358974 AGGTTATTTTGAGGGATTGGTTTG 57.641 37.500 0.00 0.00 0.00 2.93
234 235 4.935205 GGTTATTTTGAGGGATTGGTTTGC 59.065 41.667 0.00 0.00 0.00 3.68
235 236 2.810439 TTTTGAGGGATTGGTTTGCG 57.190 45.000 0.00 0.00 0.00 4.85
236 237 0.965439 TTTGAGGGATTGGTTTGCGG 59.035 50.000 0.00 0.00 0.00 5.69
237 238 1.531739 TTGAGGGATTGGTTTGCGGC 61.532 55.000 0.00 0.00 0.00 6.53
238 239 1.678970 GAGGGATTGGTTTGCGGCT 60.679 57.895 0.00 0.00 0.00 5.52
239 240 0.393808 GAGGGATTGGTTTGCGGCTA 60.394 55.000 0.00 0.00 0.00 3.93
240 241 0.394352 AGGGATTGGTTTGCGGCTAG 60.394 55.000 0.00 0.00 0.00 3.42
241 242 0.393808 GGGATTGGTTTGCGGCTAGA 60.394 55.000 0.00 0.00 0.00 2.43
242 243 1.680338 GGATTGGTTTGCGGCTAGAT 58.320 50.000 0.00 0.00 0.00 1.98
243 244 1.604278 GGATTGGTTTGCGGCTAGATC 59.396 52.381 0.00 0.00 0.00 2.75
244 245 1.261619 GATTGGTTTGCGGCTAGATCG 59.738 52.381 0.00 0.00 0.00 3.69
245 246 0.248012 TTGGTTTGCGGCTAGATCGA 59.752 50.000 0.00 0.00 0.00 3.59
246 247 0.464036 TGGTTTGCGGCTAGATCGAT 59.536 50.000 0.00 0.00 0.00 3.59
247 248 1.140816 GGTTTGCGGCTAGATCGATC 58.859 55.000 17.91 17.91 0.00 3.69
248 249 0.778815 GTTTGCGGCTAGATCGATCG 59.221 55.000 19.33 9.36 0.00 3.69
249 250 0.318699 TTTGCGGCTAGATCGATCGG 60.319 55.000 19.33 16.42 0.00 4.18
250 251 1.452953 TTGCGGCTAGATCGATCGGT 61.453 55.000 19.33 8.34 0.00 4.69
251 252 1.154188 GCGGCTAGATCGATCGGTC 60.154 63.158 20.80 20.80 0.00 4.79
252 253 1.853114 GCGGCTAGATCGATCGGTCA 61.853 60.000 28.86 14.42 0.00 4.02
253 254 0.805614 CGGCTAGATCGATCGGTCAT 59.194 55.000 28.86 16.46 0.00 3.06
254 255 1.466529 CGGCTAGATCGATCGGTCATG 60.467 57.143 28.86 20.64 0.00 3.07
255 256 1.542030 GGCTAGATCGATCGGTCATGT 59.458 52.381 28.86 12.16 0.00 3.21
256 257 2.414824 GGCTAGATCGATCGGTCATGTC 60.415 54.545 28.86 18.32 0.00 3.06
257 258 2.726373 GCTAGATCGATCGGTCATGTCG 60.726 54.545 28.86 13.16 36.75 4.35
258 259 1.309950 AGATCGATCGGTCATGTCGT 58.690 50.000 28.86 5.42 36.77 4.34
259 260 1.676529 AGATCGATCGGTCATGTCGTT 59.323 47.619 28.86 4.65 36.77 3.85
260 261 1.781429 GATCGATCGGTCATGTCGTTG 59.219 52.381 23.20 0.00 36.77 4.10
261 262 0.524414 TCGATCGGTCATGTCGTTGT 59.476 50.000 16.41 0.88 36.77 3.32
262 263 0.640262 CGATCGGTCATGTCGTTGTG 59.360 55.000 7.38 0.00 0.00 3.33
263 264 1.710013 GATCGGTCATGTCGTTGTGT 58.290 50.000 10.02 0.00 0.00 3.72
264 265 1.390123 GATCGGTCATGTCGTTGTGTG 59.610 52.381 10.02 0.00 0.00 3.82
265 266 1.204062 CGGTCATGTCGTTGTGTGC 59.796 57.895 0.00 0.00 0.00 4.57
266 267 1.204062 GGTCATGTCGTTGTGTGCG 59.796 57.895 0.00 0.00 0.00 5.34
267 268 1.204062 GTCATGTCGTTGTGTGCGG 59.796 57.895 0.00 0.00 0.00 5.69
268 269 1.958715 TCATGTCGTTGTGTGCGGG 60.959 57.895 0.00 0.00 0.00 6.13
269 270 3.353836 ATGTCGTTGTGTGCGGGC 61.354 61.111 0.00 0.00 0.00 6.13
272 273 3.617735 TCGTTGTGTGCGGGCCTA 61.618 61.111 0.84 0.00 0.00 3.93
273 274 3.419759 CGTTGTGTGCGGGCCTAC 61.420 66.667 0.84 0.82 0.00 3.18
274 275 3.419759 GTTGTGTGCGGGCCTACG 61.420 66.667 0.84 0.00 0.00 3.51
283 284 4.397832 GGGCCTACGCGTGGGAAA 62.398 66.667 41.35 12.53 35.02 3.13
284 285 3.122971 GGCCTACGCGTGGGAAAC 61.123 66.667 41.35 26.58 35.02 2.78
294 295 2.346597 GTGGGAAACGGCAATTCCA 58.653 52.632 17.16 0.00 46.69 3.53
295 296 0.038618 GTGGGAAACGGCAATTCCAC 60.039 55.000 17.16 7.97 46.69 4.02
296 297 0.178975 TGGGAAACGGCAATTCCACT 60.179 50.000 17.16 0.00 46.69 4.00
297 298 1.074084 TGGGAAACGGCAATTCCACTA 59.926 47.619 17.16 3.77 46.69 2.74
298 299 2.164338 GGGAAACGGCAATTCCACTAA 58.836 47.619 17.16 0.00 46.69 2.24
299 300 2.758423 GGGAAACGGCAATTCCACTAAT 59.242 45.455 17.16 0.00 46.69 1.73
300 301 3.194755 GGGAAACGGCAATTCCACTAATT 59.805 43.478 17.16 0.00 46.69 1.40
301 302 4.421058 GGAAACGGCAATTCCACTAATTC 58.579 43.478 12.12 0.00 44.70 2.17
302 303 4.082463 GGAAACGGCAATTCCACTAATTCA 60.082 41.667 12.12 0.00 44.70 2.57
303 304 4.701956 AACGGCAATTCCACTAATTCAG 57.298 40.909 0.00 0.00 35.54 3.02
304 305 3.016736 ACGGCAATTCCACTAATTCAGG 58.983 45.455 0.00 0.00 35.54 3.86
305 306 2.223572 CGGCAATTCCACTAATTCAGGC 60.224 50.000 0.00 0.00 35.54 4.85
306 307 2.101415 GGCAATTCCACTAATTCAGGCC 59.899 50.000 0.00 0.00 37.14 5.19
307 308 2.760092 GCAATTCCACTAATTCAGGCCA 59.240 45.455 5.01 0.00 35.54 5.36
308 309 3.385755 GCAATTCCACTAATTCAGGCCAT 59.614 43.478 5.01 0.00 35.54 4.40
309 310 4.500375 GCAATTCCACTAATTCAGGCCATC 60.500 45.833 5.01 0.00 35.54 3.51
310 311 2.620251 TCCACTAATTCAGGCCATCG 57.380 50.000 5.01 0.00 0.00 3.84
311 312 0.947244 CCACTAATTCAGGCCATCGC 59.053 55.000 5.01 0.00 0.00 4.58
312 313 1.475751 CCACTAATTCAGGCCATCGCT 60.476 52.381 5.01 0.00 34.44 4.93
313 314 1.600957 CACTAATTCAGGCCATCGCTG 59.399 52.381 5.01 0.00 34.44 5.18
314 315 1.486310 ACTAATTCAGGCCATCGCTGA 59.514 47.619 5.01 0.00 34.44 4.26
315 316 2.105477 ACTAATTCAGGCCATCGCTGAT 59.895 45.455 5.01 0.00 34.44 2.90
316 317 2.062971 AATTCAGGCCATCGCTGATT 57.937 45.000 5.01 0.00 34.44 2.57
317 318 2.062971 ATTCAGGCCATCGCTGATTT 57.937 45.000 5.01 0.00 34.44 2.17
318 319 2.708216 TTCAGGCCATCGCTGATTTA 57.292 45.000 5.01 0.00 34.44 1.40
319 320 1.953559 TCAGGCCATCGCTGATTTAC 58.046 50.000 5.01 0.00 34.44 2.01
320 321 1.486310 TCAGGCCATCGCTGATTTACT 59.514 47.619 5.01 0.00 34.44 2.24
321 322 2.092968 TCAGGCCATCGCTGATTTACTT 60.093 45.455 5.01 0.00 34.44 2.24
322 323 2.032550 CAGGCCATCGCTGATTTACTTG 59.967 50.000 5.01 0.00 34.44 3.16
323 324 1.268743 GGCCATCGCTGATTTACTTGC 60.269 52.381 0.00 0.00 34.44 4.01
324 325 1.268743 GCCATCGCTGATTTACTTGCC 60.269 52.381 0.00 0.00 0.00 4.52
325 326 1.334869 CCATCGCTGATTTACTTGCCC 59.665 52.381 0.00 0.00 0.00 5.36
326 327 2.016318 CATCGCTGATTTACTTGCCCA 58.984 47.619 0.00 0.00 0.00 5.36
327 328 2.418368 TCGCTGATTTACTTGCCCAT 57.582 45.000 0.00 0.00 0.00 4.00
328 329 2.722094 TCGCTGATTTACTTGCCCATT 58.278 42.857 0.00 0.00 0.00 3.16
329 330 3.879998 TCGCTGATTTACTTGCCCATTA 58.120 40.909 0.00 0.00 0.00 1.90
330 331 3.625764 TCGCTGATTTACTTGCCCATTAC 59.374 43.478 0.00 0.00 0.00 1.89
331 332 3.627577 CGCTGATTTACTTGCCCATTACT 59.372 43.478 0.00 0.00 0.00 2.24
332 333 4.814234 CGCTGATTTACTTGCCCATTACTA 59.186 41.667 0.00 0.00 0.00 1.82
333 334 5.050091 CGCTGATTTACTTGCCCATTACTAG 60.050 44.000 0.00 0.00 0.00 2.57
334 335 6.055588 GCTGATTTACTTGCCCATTACTAGA 58.944 40.000 0.00 0.00 0.00 2.43
335 336 6.017852 GCTGATTTACTTGCCCATTACTAGAC 60.018 42.308 0.00 0.00 0.00 2.59
336 337 6.354130 TGATTTACTTGCCCATTACTAGACC 58.646 40.000 0.00 0.00 0.00 3.85
337 338 6.157994 TGATTTACTTGCCCATTACTAGACCT 59.842 38.462 0.00 0.00 0.00 3.85
338 339 7.346175 TGATTTACTTGCCCATTACTAGACCTA 59.654 37.037 0.00 0.00 0.00 3.08
339 340 7.499200 TTTACTTGCCCATTACTAGACCTAA 57.501 36.000 0.00 0.00 0.00 2.69
340 341 7.499200 TTACTTGCCCATTACTAGACCTAAA 57.501 36.000 0.00 0.00 0.00 1.85
341 342 5.742063 ACTTGCCCATTACTAGACCTAAAC 58.258 41.667 0.00 0.00 0.00 2.01
342 343 4.395959 TGCCCATTACTAGACCTAAACG 57.604 45.455 0.00 0.00 0.00 3.60
343 344 3.770933 TGCCCATTACTAGACCTAAACGT 59.229 43.478 0.00 0.00 0.00 3.99
344 345 4.955450 TGCCCATTACTAGACCTAAACGTA 59.045 41.667 0.00 0.00 0.00 3.57
345 346 5.163519 TGCCCATTACTAGACCTAAACGTAC 60.164 44.000 0.00 0.00 0.00 3.67
346 347 5.163519 GCCCATTACTAGACCTAAACGTACA 60.164 44.000 0.00 0.00 0.00 2.90
347 348 6.501781 CCCATTACTAGACCTAAACGTACAG 58.498 44.000 0.00 0.00 0.00 2.74
348 349 6.319658 CCCATTACTAGACCTAAACGTACAGA 59.680 42.308 0.00 0.00 0.00 3.41
349 350 7.192232 CCATTACTAGACCTAAACGTACAGAC 58.808 42.308 0.00 0.00 0.00 3.51
350 351 7.148188 CCATTACTAGACCTAAACGTACAGACA 60.148 40.741 0.00 0.00 0.00 3.41
351 352 7.928307 TTACTAGACCTAAACGTACAGACAT 57.072 36.000 0.00 0.00 0.00 3.06
352 353 6.192234 ACTAGACCTAAACGTACAGACATG 57.808 41.667 0.00 0.00 0.00 3.21
353 354 5.709164 ACTAGACCTAAACGTACAGACATGT 59.291 40.000 0.00 0.00 43.76 3.21
354 355 5.464030 AGACCTAAACGTACAGACATGTT 57.536 39.130 0.00 0.00 41.01 2.71
355 356 5.227908 AGACCTAAACGTACAGACATGTTG 58.772 41.667 0.00 3.12 41.01 3.33
356 357 3.744426 ACCTAAACGTACAGACATGTTGC 59.256 43.478 0.00 0.00 41.01 4.17
357 358 3.743911 CCTAAACGTACAGACATGTTGCA 59.256 43.478 0.00 0.00 41.01 4.08
358 359 3.602390 AAACGTACAGACATGTTGCAC 57.398 42.857 0.00 0.88 41.01 4.57
359 360 1.508632 ACGTACAGACATGTTGCACC 58.491 50.000 0.00 0.00 41.01 5.01
360 361 1.070134 ACGTACAGACATGTTGCACCT 59.930 47.619 0.00 0.00 41.01 4.00
361 362 2.297880 ACGTACAGACATGTTGCACCTA 59.702 45.455 0.00 0.00 41.01 3.08
362 363 3.243941 ACGTACAGACATGTTGCACCTAA 60.244 43.478 0.00 0.00 41.01 2.69
363 364 3.743911 CGTACAGACATGTTGCACCTAAA 59.256 43.478 0.00 0.00 41.01 1.85
364 365 4.391830 CGTACAGACATGTTGCACCTAAAT 59.608 41.667 0.00 0.00 41.01 1.40
365 366 5.106712 CGTACAGACATGTTGCACCTAAATT 60.107 40.000 0.00 0.00 41.01 1.82
366 367 6.091577 CGTACAGACATGTTGCACCTAAATTA 59.908 38.462 0.00 0.00 41.01 1.40
367 368 6.500684 ACAGACATGTTGCACCTAAATTAG 57.499 37.500 0.00 0.00 35.63 1.73
368 369 5.106157 ACAGACATGTTGCACCTAAATTAGC 60.106 40.000 0.00 0.00 35.63 3.09
369 370 4.094887 AGACATGTTGCACCTAAATTAGCG 59.905 41.667 0.00 0.00 0.00 4.26
370 371 2.911819 TGTTGCACCTAAATTAGCGC 57.088 45.000 0.00 0.00 0.00 5.92
371 372 2.155279 TGTTGCACCTAAATTAGCGCA 58.845 42.857 11.47 10.12 32.92 6.09
372 373 2.161410 TGTTGCACCTAAATTAGCGCAG 59.839 45.455 11.47 0.00 35.21 5.18
373 374 1.378531 TGCACCTAAATTAGCGCAGG 58.621 50.000 11.47 9.19 31.68 4.85
374 375 0.663153 GCACCTAAATTAGCGCAGGG 59.337 55.000 11.47 2.93 32.12 4.45
375 376 2.017113 GCACCTAAATTAGCGCAGGGT 61.017 52.381 11.47 3.60 32.12 4.34
376 377 1.940613 CACCTAAATTAGCGCAGGGTC 59.059 52.381 11.47 0.00 32.12 4.46
377 378 1.557832 ACCTAAATTAGCGCAGGGTCA 59.442 47.619 11.47 0.00 32.12 4.02
378 379 2.026636 ACCTAAATTAGCGCAGGGTCAA 60.027 45.455 11.47 0.00 32.12 3.18
379 380 3.214328 CCTAAATTAGCGCAGGGTCAAT 58.786 45.455 11.47 0.00 0.00 2.57
380 381 3.632145 CCTAAATTAGCGCAGGGTCAATT 59.368 43.478 11.47 2.36 0.00 2.32
381 382 4.097892 CCTAAATTAGCGCAGGGTCAATTT 59.902 41.667 11.47 12.81 34.26 1.82
382 383 4.535526 AAATTAGCGCAGGGTCAATTTT 57.464 36.364 11.47 0.00 0.00 1.82
383 384 4.535526 AATTAGCGCAGGGTCAATTTTT 57.464 36.364 11.47 0.00 0.00 1.94
402 403 5.975693 TTTTTCAAGGGCCTAATACACAG 57.024 39.130 6.41 0.00 0.00 3.66
403 404 4.919774 TTTCAAGGGCCTAATACACAGA 57.080 40.909 6.41 0.00 0.00 3.41
404 405 4.487714 TTCAAGGGCCTAATACACAGAG 57.512 45.455 6.41 0.00 0.00 3.35
405 406 2.170607 TCAAGGGCCTAATACACAGAGC 59.829 50.000 6.41 0.00 0.00 4.09
406 407 1.879575 AGGGCCTAATACACAGAGCA 58.120 50.000 2.82 0.00 0.00 4.26
407 408 1.486726 AGGGCCTAATACACAGAGCAC 59.513 52.381 2.82 0.00 0.00 4.40
408 409 1.209504 GGGCCTAATACACAGAGCACA 59.790 52.381 0.84 0.00 0.00 4.57
409 410 2.280628 GGCCTAATACACAGAGCACAC 58.719 52.381 0.00 0.00 0.00 3.82
410 411 2.354704 GGCCTAATACACAGAGCACACA 60.355 50.000 0.00 0.00 0.00 3.72
411 412 3.535561 GCCTAATACACAGAGCACACAT 58.464 45.455 0.00 0.00 0.00 3.21
412 413 4.442893 GGCCTAATACACAGAGCACACATA 60.443 45.833 0.00 0.00 0.00 2.29
413 414 4.747108 GCCTAATACACAGAGCACACATAG 59.253 45.833 0.00 0.00 0.00 2.23
414 415 5.292765 CCTAATACACAGAGCACACATAGG 58.707 45.833 0.00 0.00 0.00 2.57
415 416 4.826274 AATACACAGAGCACACATAGGT 57.174 40.909 0.00 0.00 0.00 3.08
424 425 3.820843 CACATAGGTGGGGGCCCC 61.821 72.222 36.02 36.02 45.71 5.80
425 426 4.052833 ACATAGGTGGGGGCCCCT 62.053 66.667 40.43 24.58 45.70 4.79
426 427 2.292511 CATAGGTGGGGGCCCCTA 59.707 66.667 40.43 33.65 45.70 3.53
427 428 1.151587 CATAGGTGGGGGCCCCTAT 60.152 63.158 40.43 26.99 45.70 2.57
428 429 1.151587 ATAGGTGGGGGCCCCTATG 60.152 63.158 40.43 0.00 45.70 2.23
429 430 1.997766 ATAGGTGGGGGCCCCTATGT 61.998 60.000 40.43 26.33 45.70 2.29
430 431 2.216816 TAGGTGGGGGCCCCTATGTT 62.217 60.000 40.43 24.30 45.70 2.71
431 432 2.601299 GTGGGGGCCCCTATGTTC 59.399 66.667 40.43 22.76 45.70 3.18
432 433 2.698406 TGGGGGCCCCTATGTTCC 60.698 66.667 40.43 21.98 45.70 3.62
433 434 3.886001 GGGGGCCCCTATGTTCCG 61.886 72.222 39.92 0.00 41.34 4.30
434 435 3.886001 GGGGCCCCTATGTTCCGG 61.886 72.222 35.49 0.00 0.00 5.14
435 436 3.886001 GGGCCCCTATGTTCCGGG 61.886 72.222 12.23 0.00 40.29 5.73
439 440 3.886001 CCCTATGTTCCGGGGGCC 61.886 72.222 0.00 0.00 36.78 5.80
440 441 3.886001 CCTATGTTCCGGGGGCCC 61.886 72.222 15.76 15.76 0.00 5.80
471 472 3.023116 CCCCTGCCCCCTCATCAA 61.023 66.667 0.00 0.00 0.00 2.57
472 473 2.599597 CCCTGCCCCCTCATCAAG 59.400 66.667 0.00 0.00 0.00 3.02
473 474 2.002977 CCCTGCCCCCTCATCAAGA 61.003 63.158 0.00 0.00 0.00 3.02
474 475 1.225704 CCTGCCCCCTCATCAAGAC 59.774 63.158 0.00 0.00 0.00 3.01
475 476 1.225704 CTGCCCCCTCATCAAGACC 59.774 63.158 0.00 0.00 0.00 3.85
476 477 2.190578 GCCCCCTCATCAAGACCG 59.809 66.667 0.00 0.00 0.00 4.79
477 478 2.911143 CCCCCTCATCAAGACCGG 59.089 66.667 0.00 0.00 0.00 5.28
478 479 2.746375 CCCCCTCATCAAGACCGGG 61.746 68.421 6.32 0.00 32.67 5.73
479 480 2.190578 CCCTCATCAAGACCGGGC 59.809 66.667 6.32 0.52 0.00 6.13
480 481 2.190578 CCTCATCAAGACCGGGCC 59.809 66.667 1.76 0.00 0.00 5.80
481 482 2.370445 CCTCATCAAGACCGGGCCT 61.370 63.158 1.76 0.00 0.00 5.19
482 483 1.153289 CTCATCAAGACCGGGCCTG 60.153 63.158 1.76 0.00 0.00 4.85
483 484 2.825836 CATCAAGACCGGGCCTGC 60.826 66.667 1.76 0.00 0.00 4.85
484 485 3.329889 ATCAAGACCGGGCCTGCA 61.330 61.111 1.76 0.00 0.00 4.41
485 486 2.683465 ATCAAGACCGGGCCTGCAT 61.683 57.895 1.76 0.00 0.00 3.96
486 487 2.615227 ATCAAGACCGGGCCTGCATC 62.615 60.000 1.76 5.96 0.00 3.91
487 488 4.115199 AAGACCGGGCCTGCATCC 62.115 66.667 1.76 0.00 0.00 3.51
493 494 3.161450 GGGCCTGCATCCCTCGTA 61.161 66.667 15.02 0.00 40.66 3.43
494 495 2.520536 GGGCCTGCATCCCTCGTAT 61.521 63.158 15.02 0.00 40.66 3.06
495 496 1.004440 GGCCTGCATCCCTCGTATC 60.004 63.158 0.00 0.00 0.00 2.24
496 497 1.373497 GCCTGCATCCCTCGTATCG 60.373 63.158 0.00 0.00 0.00 2.92
497 498 1.373497 CCTGCATCCCTCGTATCGC 60.373 63.158 0.00 0.00 0.00 4.58
498 499 1.373497 CTGCATCCCTCGTATCGCC 60.373 63.158 0.00 0.00 0.00 5.54
499 500 2.048127 GCATCCCTCGTATCGCCC 60.048 66.667 0.00 0.00 0.00 6.13
500 501 2.657237 CATCCCTCGTATCGCCCC 59.343 66.667 0.00 0.00 0.00 5.80
501 502 2.200370 ATCCCTCGTATCGCCCCA 59.800 61.111 0.00 0.00 0.00 4.96
512 513 2.650813 ATCGCCCCATTCGAGCTGAC 62.651 60.000 0.00 0.00 39.47 3.51
514 515 2.202932 CCCCATTCGAGCTGACCG 60.203 66.667 0.00 0.00 0.00 4.79
554 555 6.833933 CCTCCAGCCCTAAACAACTAAAATAT 59.166 38.462 0.00 0.00 0.00 1.28
556 557 6.540914 TCCAGCCCTAAACAACTAAAATATCG 59.459 38.462 0.00 0.00 0.00 2.92
580 2734 4.737353 AAATTCCCACGTTAAGTCGAAC 57.263 40.909 0.00 0.00 34.70 3.95
600 2754 6.036408 TCGAACAACATAAAGATCTGCATCTG 59.964 38.462 0.00 0.00 38.55 2.90
606 2760 7.707624 ACATAAAGATCTGCATCTGGAAAAA 57.292 32.000 0.00 0.00 38.55 1.94
644 2840 6.372659 CCCGAATCAGATCAGAGAAAGAAAAA 59.627 38.462 0.00 0.00 0.00 1.94
775 2977 3.864789 ACCAGAAAGAGAAAGAGGCAA 57.135 42.857 0.00 0.00 0.00 4.52
964 3179 1.508808 CGAGTAGCGGGAGGTAGAGC 61.509 65.000 0.00 0.00 44.40 4.09
968 3183 2.642183 TAGCGGGAGGTAGAGCTGGG 62.642 65.000 0.00 0.00 42.74 4.45
978 3193 2.211468 TAGAGCTGGGAGAGACGCCA 62.211 60.000 0.00 0.00 0.00 5.69
980 3195 3.386237 GCTGGGAGAGACGCCAGT 61.386 66.667 0.00 0.00 38.40 4.00
984 3199 4.803426 GGAGAGACGCCAGTGCCG 62.803 72.222 0.00 0.00 0.00 5.69
1101 3316 3.649277 CTCGTCCTCAGGTTGGCCG 62.649 68.421 0.00 0.00 40.50 6.13
1113 3328 3.277211 TTGGCCGTTCTCCGACTCG 62.277 63.158 0.00 0.00 39.56 4.18
1137 3352 1.876156 GTCTCCTCTTGGCAGTTGTTG 59.124 52.381 0.00 0.00 0.00 3.33
1138 3353 1.490490 TCTCCTCTTGGCAGTTGTTGT 59.510 47.619 0.00 0.00 0.00 3.32
1141 3356 1.338020 CCTCTTGGCAGTTGTTGTTCC 59.662 52.381 0.00 0.00 0.00 3.62
1146 3361 1.239347 GGCAGTTGTTGTTCCTCCTC 58.761 55.000 0.00 0.00 0.00 3.71
1160 3375 0.462759 CTCCTCCTTCGCCAATGGAC 60.463 60.000 2.05 0.00 0.00 4.02
1234 3449 2.475466 GGTCGACGGCGTGGATAGA 61.475 63.158 26.71 10.79 38.98 1.98
1362 3577 0.552848 TGATCCCCAGGATTGCTTCC 59.447 55.000 0.00 0.00 43.27 3.46
1406 3621 0.731514 TTGGACAACGATCGCGAGTC 60.732 55.000 16.66 19.01 41.59 3.36
1719 3938 5.939764 TCAAACATAGAGCATCAGGTACT 57.060 39.130 0.00 0.00 43.88 2.73
1724 3943 2.393271 AGAGCATCAGGTACTTGTGC 57.607 50.000 18.27 18.27 34.60 4.57
1808 4027 1.340502 TGTTCTGTTGTGAAGTGGGCA 60.341 47.619 0.00 0.00 0.00 5.36
1867 4086 9.261180 CTCTTAGTACAAGATGACACTTGAAAA 57.739 33.333 18.57 9.54 46.85 2.29
2025 4245 7.050377 TCATTTTTCGCTCTATCAGGAAGAAT 58.950 34.615 0.00 0.00 0.00 2.40
2211 4431 5.174761 CGCTAAACTACAGAATCTGAGATGC 59.825 44.000 18.20 9.96 35.18 3.91
2218 4438 6.706716 ACTACAGAATCTGAGATGCATGATTG 59.293 38.462 18.20 0.00 35.18 2.67
2224 4444 4.014406 TCTGAGATGCATGATTGTTTGCT 58.986 39.130 2.46 0.00 39.60 3.91
2545 4769 9.010029 TGCCTTAATGTAGAAAAGTAAAGAAGG 57.990 33.333 0.00 0.00 33.28 3.46
2585 4809 6.916387 TCCAGTAGACTAAATAAAGCGAATCG 59.084 38.462 0.00 0.00 0.00 3.34
2604 4828 6.183359 CGAATCGAAAGTACACCTTACAGAAC 60.183 42.308 0.00 0.00 31.48 3.01
2605 4829 4.539870 TCGAAAGTACACCTTACAGAACG 58.460 43.478 0.00 0.00 31.48 3.95
2620 4844 4.974591 ACAGAACGAAATGCAGAAATAGC 58.025 39.130 0.00 0.00 0.00 2.97
2625 4849 2.542411 CGAAATGCAGAAATAGCCCAGC 60.542 50.000 0.00 0.00 0.00 4.85
2669 4893 9.725019 TCAATATGACACTGAAACAGTAATCTT 57.275 29.630 4.08 6.55 43.43 2.40
2679 4903 7.876582 ACTGAAACAGTAATCTTGTACCCTTAC 59.123 37.037 2.43 0.00 43.46 2.34
2779 5011 0.671251 GTGACCGTGCAATTTGGGAA 59.329 50.000 0.00 0.00 0.00 3.97
2986 5218 4.680440 GCAGTCAAACCAAGGTCATTGTTT 60.680 41.667 0.00 0.00 37.17 2.83
3030 5263 6.235231 ACTTTCAGGTACAGTCTTTCTTCA 57.765 37.500 0.00 0.00 0.00 3.02
3035 5268 6.692486 TCAGGTACAGTCTTTCTTCATCTTC 58.308 40.000 0.00 0.00 0.00 2.87
3042 5275 6.264067 ACAGTCTTTCTTCATCTTCCCTTTTG 59.736 38.462 0.00 0.00 0.00 2.44
3073 5306 5.068987 GGAGATGAGAATCTACAAGAGCTGT 59.931 44.000 0.00 0.00 42.47 4.40
3109 5343 1.442520 CCGCCGCAACTGAACAATG 60.443 57.895 0.00 0.00 0.00 2.82
3124 5358 6.376299 ACTGAACAATGTATGCTTGTGATGAT 59.624 34.615 0.00 0.00 36.95 2.45
3125 5359 6.557110 TGAACAATGTATGCTTGTGATGATG 58.443 36.000 0.00 0.00 36.95 3.07
3126 5360 6.151480 TGAACAATGTATGCTTGTGATGATGT 59.849 34.615 0.00 0.00 36.95 3.06
3127 5361 6.519679 ACAATGTATGCTTGTGATGATGTT 57.480 33.333 0.00 0.00 35.57 2.71
3128 5362 6.558009 ACAATGTATGCTTGTGATGATGTTC 58.442 36.000 0.00 0.00 35.57 3.18
3129 5363 6.376299 ACAATGTATGCTTGTGATGATGTTCT 59.624 34.615 0.00 0.00 35.57 3.01
3130 5364 7.094075 ACAATGTATGCTTGTGATGATGTTCTT 60.094 33.333 0.00 0.00 35.57 2.52
3131 5365 8.400186 CAATGTATGCTTGTGATGATGTTCTTA 58.600 33.333 0.00 0.00 0.00 2.10
3132 5366 7.307493 TGTATGCTTGTGATGATGTTCTTAC 57.693 36.000 0.00 0.00 0.00 2.34
3135 5369 4.455533 TGCTTGTGATGATGTTCTTACCAC 59.544 41.667 0.00 0.00 0.00 4.16
3137 5371 5.182001 GCTTGTGATGATGTTCTTACCACTT 59.818 40.000 0.00 0.00 0.00 3.16
3140 5374 5.867174 TGTGATGATGTTCTTACCACTTACG 59.133 40.000 0.00 0.00 0.00 3.18
3204 5446 7.637511 ACATTCTCTGAATTCTCCTTTATGGT 58.362 34.615 7.05 0.00 37.07 3.55
3312 5570 7.615582 TTGTAATTCAGAAAATGATCGAGCT 57.384 32.000 0.90 0.00 37.89 4.09
3461 5722 1.989706 TTAGGGCCTGTTTGGAACAC 58.010 50.000 18.53 0.00 39.29 3.32
3523 5784 5.771165 CAGGCCCTTAACCTTAACACTTTTA 59.229 40.000 0.00 0.00 34.42 1.52
3582 5843 6.895756 TCCTGACCTGATTACACTACTAACAT 59.104 38.462 0.00 0.00 0.00 2.71
3654 5915 4.380531 TGATTGAAGATATTCAGCGGGTC 58.619 43.478 2.58 0.09 31.87 4.46
3930 6191 1.967066 CTACCAGGAGGGCAGAGTATG 59.033 57.143 0.00 0.00 42.05 2.39
3973 6242 5.983118 GTGCTGTTAAAGTTTGGTTATTGCT 59.017 36.000 0.00 0.00 0.00 3.91
4096 6369 6.237888 GCATTTTAAAACCGAACCGAAAAACT 60.238 34.615 1.97 0.00 0.00 2.66
4157 6433 5.508200 TTTATGGTTGGTTTCGATATGGC 57.492 39.130 0.00 0.00 0.00 4.40
4633 6912 9.756571 ACCAAAGTATTAATACCATACAAACCA 57.243 29.630 19.74 0.00 33.79 3.67
4644 6923 4.516321 ACCATACAAACCAGAAAACCGTAC 59.484 41.667 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.221742 GGGCTAGCTAGGTTTTGTGATAGAT 60.222 44.000 22.10 0.00 0.00 1.98
1 2 4.101119 GGGCTAGCTAGGTTTTGTGATAGA 59.899 45.833 22.10 0.00 0.00 1.98
2 3 4.381411 GGGCTAGCTAGGTTTTGTGATAG 58.619 47.826 22.10 0.00 0.00 2.08
3 4 3.135895 GGGGCTAGCTAGGTTTTGTGATA 59.864 47.826 22.10 0.00 0.00 2.15
4 5 2.092375 GGGGCTAGCTAGGTTTTGTGAT 60.092 50.000 22.10 0.00 0.00 3.06
5 6 1.280998 GGGGCTAGCTAGGTTTTGTGA 59.719 52.381 22.10 0.00 0.00 3.58
6 7 1.751437 GGGGCTAGCTAGGTTTTGTG 58.249 55.000 22.10 0.00 0.00 3.33
7 8 0.252197 CGGGGCTAGCTAGGTTTTGT 59.748 55.000 22.10 0.00 0.00 2.83
8 9 0.463833 CCGGGGCTAGCTAGGTTTTG 60.464 60.000 22.10 0.00 0.00 2.44
9 10 1.632965 CCCGGGGCTAGCTAGGTTTT 61.633 60.000 22.10 0.00 0.00 2.43
10 11 2.070650 CCCGGGGCTAGCTAGGTTT 61.071 63.158 22.10 0.00 0.00 3.27
11 12 2.327958 ATCCCGGGGCTAGCTAGGTT 62.328 60.000 23.50 2.99 0.00 3.50
12 13 2.791406 ATCCCGGGGCTAGCTAGGT 61.791 63.158 23.50 0.00 0.00 3.08
13 14 2.120718 ATCCCGGGGCTAGCTAGG 59.879 66.667 23.50 14.69 0.00 3.02
14 15 0.616111 ATCATCCCGGGGCTAGCTAG 60.616 60.000 23.50 16.84 0.00 3.42
15 16 0.904865 CATCATCCCGGGGCTAGCTA 60.905 60.000 23.50 0.00 0.00 3.32
16 17 2.205462 ATCATCCCGGGGCTAGCT 59.795 61.111 23.50 0.00 0.00 3.32
17 18 1.768684 TTCATCATCCCGGGGCTAGC 61.769 60.000 23.50 6.04 0.00 3.42
18 19 0.987294 ATTCATCATCCCGGGGCTAG 59.013 55.000 23.50 8.41 0.00 3.42
19 20 0.984230 GATTCATCATCCCGGGGCTA 59.016 55.000 23.50 6.31 0.00 3.93
20 21 1.061905 TGATTCATCATCCCGGGGCT 61.062 55.000 23.50 5.49 0.00 5.19
21 22 0.178992 TTGATTCATCATCCCGGGGC 60.179 55.000 23.50 0.00 36.56 5.80
22 23 1.421268 TCTTGATTCATCATCCCGGGG 59.579 52.381 23.50 6.77 36.56 5.73
23 24 2.936919 TCTTGATTCATCATCCCGGG 57.063 50.000 16.85 16.85 36.56 5.73
24 25 4.077300 TCTTCTTGATTCATCATCCCGG 57.923 45.455 0.00 0.00 36.56 5.73
25 26 4.083431 GCATCTTCTTGATTCATCATCCCG 60.083 45.833 0.00 0.00 36.56 5.14
26 27 5.071370 AGCATCTTCTTGATTCATCATCCC 58.929 41.667 0.00 0.00 36.56 3.85
27 28 6.636562 AAGCATCTTCTTGATTCATCATCC 57.363 37.500 0.00 0.00 36.56 3.51
28 29 7.444792 AGGTAAGCATCTTCTTGATTCATCATC 59.555 37.037 0.00 0.00 36.56 2.92
29 30 7.228906 CAGGTAAGCATCTTCTTGATTCATCAT 59.771 37.037 0.00 0.00 36.56 2.45
30 31 6.541278 CAGGTAAGCATCTTCTTGATTCATCA 59.459 38.462 0.00 0.00 32.05 3.07
31 32 6.541641 ACAGGTAAGCATCTTCTTGATTCATC 59.458 38.462 0.00 0.00 32.05 2.92
32 33 6.421485 ACAGGTAAGCATCTTCTTGATTCAT 58.579 36.000 0.00 0.00 32.05 2.57
33 34 5.809001 ACAGGTAAGCATCTTCTTGATTCA 58.191 37.500 0.00 0.00 32.05 2.57
34 35 6.597280 AGAACAGGTAAGCATCTTCTTGATTC 59.403 38.462 0.00 0.00 32.05 2.52
35 36 6.373774 CAGAACAGGTAAGCATCTTCTTGATT 59.626 38.462 0.00 0.00 32.05 2.57
36 37 5.879223 CAGAACAGGTAAGCATCTTCTTGAT 59.121 40.000 0.00 0.00 35.40 2.57
37 38 5.221722 ACAGAACAGGTAAGCATCTTCTTGA 60.222 40.000 0.00 0.00 0.00 3.02
38 39 4.999950 ACAGAACAGGTAAGCATCTTCTTG 59.000 41.667 0.00 0.00 0.00 3.02
39 40 5.234466 ACAGAACAGGTAAGCATCTTCTT 57.766 39.130 0.00 0.00 0.00 2.52
40 41 4.899352 ACAGAACAGGTAAGCATCTTCT 57.101 40.909 0.00 0.00 0.00 2.85
41 42 4.757149 ACAACAGAACAGGTAAGCATCTTC 59.243 41.667 0.00 0.00 0.00 2.87
42 43 4.718961 ACAACAGAACAGGTAAGCATCTT 58.281 39.130 0.00 0.00 0.00 2.40
43 44 4.357918 ACAACAGAACAGGTAAGCATCT 57.642 40.909 0.00 0.00 0.00 2.90
44 45 4.515191 TGAACAACAGAACAGGTAAGCATC 59.485 41.667 0.00 0.00 0.00 3.91
45 46 4.460263 TGAACAACAGAACAGGTAAGCAT 58.540 39.130 0.00 0.00 0.00 3.79
46 47 3.879998 TGAACAACAGAACAGGTAAGCA 58.120 40.909 0.00 0.00 0.00 3.91
47 48 4.574828 TCTTGAACAACAGAACAGGTAAGC 59.425 41.667 0.00 0.00 0.00 3.09
48 49 5.817816 AGTCTTGAACAACAGAACAGGTAAG 59.182 40.000 0.00 0.00 0.00 2.34
49 50 5.584649 CAGTCTTGAACAACAGAACAGGTAA 59.415 40.000 0.00 0.00 0.00 2.85
50 51 5.116180 CAGTCTTGAACAACAGAACAGGTA 58.884 41.667 0.00 0.00 0.00 3.08
51 52 3.941483 CAGTCTTGAACAACAGAACAGGT 59.059 43.478 0.00 0.00 0.00 4.00
52 53 3.242870 GCAGTCTTGAACAACAGAACAGG 60.243 47.826 0.00 0.00 0.00 4.00
53 54 3.242870 GGCAGTCTTGAACAACAGAACAG 60.243 47.826 0.00 0.00 0.00 3.16
54 55 2.682856 GGCAGTCTTGAACAACAGAACA 59.317 45.455 0.00 0.00 0.00 3.18
55 56 2.945668 AGGCAGTCTTGAACAACAGAAC 59.054 45.455 0.00 0.00 0.00 3.01
56 57 2.945008 CAGGCAGTCTTGAACAACAGAA 59.055 45.455 0.00 0.00 0.00 3.02
57 58 2.092968 ACAGGCAGTCTTGAACAACAGA 60.093 45.455 0.00 0.00 0.00 3.41
58 59 2.289002 GACAGGCAGTCTTGAACAACAG 59.711 50.000 2.39 0.00 44.09 3.16
59 60 2.288666 GACAGGCAGTCTTGAACAACA 58.711 47.619 2.39 0.00 44.09 3.33
70 71 2.362369 CCCGATCCTGACAGGCAGT 61.362 63.158 17.33 5.11 43.33 4.40
71 72 2.503061 CCCGATCCTGACAGGCAG 59.497 66.667 17.33 9.80 44.49 4.85
72 73 3.083349 CCCCGATCCTGACAGGCA 61.083 66.667 17.33 6.37 34.61 4.75
73 74 3.866582 CCCCCGATCCTGACAGGC 61.867 72.222 17.33 2.71 34.61 4.85
74 75 2.365635 ACCCCCGATCCTGACAGG 60.366 66.667 15.99 15.99 36.46 4.00
75 76 1.553690 AACACCCCCGATCCTGACAG 61.554 60.000 0.00 0.00 0.00 3.51
76 77 1.537889 AACACCCCCGATCCTGACA 60.538 57.895 0.00 0.00 0.00 3.58
77 78 1.078426 CAACACCCCCGATCCTGAC 60.078 63.158 0.00 0.00 0.00 3.51
78 79 1.131303 AACAACACCCCCGATCCTGA 61.131 55.000 0.00 0.00 0.00 3.86
79 80 0.616371 TAACAACACCCCCGATCCTG 59.384 55.000 0.00 0.00 0.00 3.86
80 81 0.616891 GTAACAACACCCCCGATCCT 59.383 55.000 0.00 0.00 0.00 3.24
81 82 0.616891 AGTAACAACACCCCCGATCC 59.383 55.000 0.00 0.00 0.00 3.36
82 83 1.406477 GGAGTAACAACACCCCCGATC 60.406 57.143 0.00 0.00 0.00 3.69
83 84 0.616891 GGAGTAACAACACCCCCGAT 59.383 55.000 0.00 0.00 0.00 4.18
84 85 0.472352 AGGAGTAACAACACCCCCGA 60.472 55.000 0.00 0.00 0.00 5.14
85 86 0.321298 CAGGAGTAACAACACCCCCG 60.321 60.000 0.00 0.00 0.00 5.73
86 87 0.769247 ACAGGAGTAACAACACCCCC 59.231 55.000 0.00 0.00 0.00 5.40
87 88 1.271217 GGACAGGAGTAACAACACCCC 60.271 57.143 0.00 0.00 0.00 4.95
88 89 1.418637 TGGACAGGAGTAACAACACCC 59.581 52.381 0.00 0.00 0.00 4.61
89 90 2.876550 GTTGGACAGGAGTAACAACACC 59.123 50.000 0.00 0.00 41.54 4.16
90 91 2.542595 CGTTGGACAGGAGTAACAACAC 59.457 50.000 0.00 0.00 41.78 3.32
91 92 2.431419 TCGTTGGACAGGAGTAACAACA 59.569 45.455 0.00 0.00 41.78 3.33
92 93 3.102052 TCGTTGGACAGGAGTAACAAC 57.898 47.619 0.00 0.00 39.96 3.32
93 94 3.118702 TGTTCGTTGGACAGGAGTAACAA 60.119 43.478 0.00 0.00 0.00 2.83
94 95 2.431419 TGTTCGTTGGACAGGAGTAACA 59.569 45.455 0.00 0.00 0.00 2.41
95 96 3.102052 TGTTCGTTGGACAGGAGTAAC 57.898 47.619 0.00 0.00 0.00 2.50
96 97 3.322541 TCATGTTCGTTGGACAGGAGTAA 59.677 43.478 0.00 0.00 33.43 2.24
97 98 2.894765 TCATGTTCGTTGGACAGGAGTA 59.105 45.455 0.00 0.00 33.43 2.59
98 99 1.691976 TCATGTTCGTTGGACAGGAGT 59.308 47.619 0.00 0.00 33.43 3.85
99 100 2.455674 TCATGTTCGTTGGACAGGAG 57.544 50.000 0.00 0.00 33.43 3.69
100 101 2.920724 TTCATGTTCGTTGGACAGGA 57.079 45.000 0.00 0.00 36.20 3.86
101 102 3.501828 TGATTTCATGTTCGTTGGACAGG 59.498 43.478 0.00 0.00 0.00 4.00
102 103 4.747540 TGATTTCATGTTCGTTGGACAG 57.252 40.909 0.00 0.00 0.00 3.51
103 104 4.155826 GGATGATTTCATGTTCGTTGGACA 59.844 41.667 0.00 0.00 36.57 4.02
104 105 4.662145 GGATGATTTCATGTTCGTTGGAC 58.338 43.478 0.00 0.00 36.57 4.02
105 106 3.373748 CGGATGATTTCATGTTCGTTGGA 59.626 43.478 0.00 0.00 36.57 3.53
106 107 3.373748 TCGGATGATTTCATGTTCGTTGG 59.626 43.478 0.00 0.00 36.57 3.77
107 108 4.581493 CTCGGATGATTTCATGTTCGTTG 58.419 43.478 0.00 0.00 36.57 4.10
108 109 3.063997 GCTCGGATGATTTCATGTTCGTT 59.936 43.478 0.00 0.00 36.57 3.85
109 110 2.609459 GCTCGGATGATTTCATGTTCGT 59.391 45.455 0.00 0.00 36.57 3.85
110 111 2.032549 GGCTCGGATGATTTCATGTTCG 60.033 50.000 0.00 0.43 36.57 3.95
111 112 2.032549 CGGCTCGGATGATTTCATGTTC 60.033 50.000 0.00 0.00 36.57 3.18
112 113 1.942657 CGGCTCGGATGATTTCATGTT 59.057 47.619 0.00 0.00 36.57 2.71
113 114 1.586422 CGGCTCGGATGATTTCATGT 58.414 50.000 0.00 0.00 36.57 3.21
114 115 0.236711 GCGGCTCGGATGATTTCATG 59.763 55.000 0.00 0.00 36.57 3.07
115 116 0.107456 AGCGGCTCGGATGATTTCAT 59.893 50.000 0.00 0.00 39.70 2.57
116 117 0.811219 CAGCGGCTCGGATGATTTCA 60.811 55.000 0.00 0.00 0.00 2.69
117 118 0.811616 ACAGCGGCTCGGATGATTTC 60.812 55.000 0.00 0.00 0.00 2.17
118 119 0.392998 AACAGCGGCTCGGATGATTT 60.393 50.000 0.00 0.00 0.00 2.17
119 120 1.091771 CAACAGCGGCTCGGATGATT 61.092 55.000 0.00 0.00 0.00 2.57
120 121 1.522355 CAACAGCGGCTCGGATGAT 60.522 57.895 0.00 0.00 0.00 2.45
121 122 2.125552 CAACAGCGGCTCGGATGA 60.126 61.111 0.00 0.00 0.00 2.92
122 123 3.197790 CCAACAGCGGCTCGGATG 61.198 66.667 0.00 0.00 0.00 3.51
123 124 3.376935 CTCCAACAGCGGCTCGGAT 62.377 63.158 11.54 0.00 0.00 4.18
124 125 4.069232 CTCCAACAGCGGCTCGGA 62.069 66.667 0.00 5.82 0.00 4.55
126 127 3.997064 CTCCTCCAACAGCGGCTCG 62.997 68.421 0.00 0.00 0.00 5.03
127 128 2.125350 CTCCTCCAACAGCGGCTC 60.125 66.667 0.00 0.00 0.00 4.70
128 129 3.710722 CCTCCTCCAACAGCGGCT 61.711 66.667 0.00 0.00 0.00 5.52
129 130 3.254024 TTCCTCCTCCAACAGCGGC 62.254 63.158 0.00 0.00 0.00 6.53
130 131 1.078848 CTTCCTCCTCCAACAGCGG 60.079 63.158 0.00 0.00 0.00 5.52
131 132 1.743252 GCTTCCTCCTCCAACAGCG 60.743 63.158 0.00 0.00 0.00 5.18
132 133 0.034670 ATGCTTCCTCCTCCAACAGC 60.035 55.000 0.00 0.00 0.00 4.40
133 134 1.741732 CGATGCTTCCTCCTCCAACAG 60.742 57.143 0.00 0.00 0.00 3.16
134 135 0.250234 CGATGCTTCCTCCTCCAACA 59.750 55.000 0.00 0.00 0.00 3.33
135 136 0.462759 CCGATGCTTCCTCCTCCAAC 60.463 60.000 0.00 0.00 0.00 3.77
136 137 0.909610 ACCGATGCTTCCTCCTCCAA 60.910 55.000 0.00 0.00 0.00 3.53
137 138 1.306141 ACCGATGCTTCCTCCTCCA 60.306 57.895 0.00 0.00 0.00 3.86
138 139 1.144936 CACCGATGCTTCCTCCTCC 59.855 63.158 0.00 0.00 0.00 4.30
139 140 0.103937 CTCACCGATGCTTCCTCCTC 59.896 60.000 0.00 0.00 0.00 3.71
140 141 1.333636 CCTCACCGATGCTTCCTCCT 61.334 60.000 0.00 0.00 0.00 3.69
141 142 1.144936 CCTCACCGATGCTTCCTCC 59.855 63.158 0.00 0.00 0.00 4.30
142 143 0.755686 ATCCTCACCGATGCTTCCTC 59.244 55.000 0.00 0.00 0.00 3.71
143 144 1.139853 GAATCCTCACCGATGCTTCCT 59.860 52.381 0.00 0.00 0.00 3.36
144 145 1.587547 GAATCCTCACCGATGCTTCC 58.412 55.000 0.00 0.00 0.00 3.46
145 146 1.587547 GGAATCCTCACCGATGCTTC 58.412 55.000 0.00 0.00 0.00 3.86
146 147 3.788672 GGAATCCTCACCGATGCTT 57.211 52.632 0.00 0.00 0.00 3.91
153 154 3.447025 CTCCCGCGGAATCCTCACC 62.447 68.421 30.73 0.00 0.00 4.02
154 155 2.107141 CTCCCGCGGAATCCTCAC 59.893 66.667 30.73 0.00 0.00 3.51
155 156 2.946988 ATCCTCCCGCGGAATCCTCA 62.947 60.000 30.73 3.34 36.49 3.86
156 157 2.210711 ATCCTCCCGCGGAATCCTC 61.211 63.158 30.73 0.00 36.49 3.71
157 158 2.122813 ATCCTCCCGCGGAATCCT 60.123 61.111 30.73 5.02 36.49 3.24
158 159 2.031163 CATCCTCCCGCGGAATCC 59.969 66.667 30.73 0.00 36.49 3.01
159 160 2.666526 GCATCCTCCCGCGGAATC 60.667 66.667 30.73 4.15 36.49 2.52
160 161 3.164269 AGCATCCTCCCGCGGAAT 61.164 61.111 30.73 11.68 36.49 3.01
161 162 4.161295 CAGCATCCTCCCGCGGAA 62.161 66.667 30.73 4.60 36.49 4.30
186 187 2.016704 CATATCACGCCCGACTCGC 61.017 63.158 0.00 0.00 0.00 5.03
187 188 2.016704 GCATATCACGCCCGACTCG 61.017 63.158 0.00 0.00 0.00 4.18
188 189 2.016704 CGCATATCACGCCCGACTC 61.017 63.158 0.00 0.00 0.00 3.36
189 190 2.027605 CGCATATCACGCCCGACT 59.972 61.111 0.00 0.00 0.00 4.18
196 197 2.717580 TAACCTAGGCGCATATCACG 57.282 50.000 10.83 0.00 0.00 4.35
197 198 5.468746 TCAAAATAACCTAGGCGCATATCAC 59.531 40.000 10.83 0.00 0.00 3.06
198 199 5.616270 TCAAAATAACCTAGGCGCATATCA 58.384 37.500 10.83 0.00 0.00 2.15
199 200 5.122396 CCTCAAAATAACCTAGGCGCATATC 59.878 44.000 10.83 0.00 0.00 1.63
200 201 5.003804 CCTCAAAATAACCTAGGCGCATAT 58.996 41.667 10.83 0.00 0.00 1.78
201 202 4.385825 CCTCAAAATAACCTAGGCGCATA 58.614 43.478 10.83 5.38 0.00 3.14
202 203 3.214328 CCTCAAAATAACCTAGGCGCAT 58.786 45.455 10.83 3.98 0.00 4.73
203 204 2.639065 CCTCAAAATAACCTAGGCGCA 58.361 47.619 10.83 0.00 0.00 6.09
204 205 1.947456 CCCTCAAAATAACCTAGGCGC 59.053 52.381 9.30 0.00 0.00 6.53
205 206 3.553828 TCCCTCAAAATAACCTAGGCG 57.446 47.619 9.30 0.00 0.00 5.52
206 207 4.584743 CCAATCCCTCAAAATAACCTAGGC 59.415 45.833 9.30 0.00 0.00 3.93
207 208 5.766590 ACCAATCCCTCAAAATAACCTAGG 58.233 41.667 7.41 7.41 0.00 3.02
208 209 7.547227 CAAACCAATCCCTCAAAATAACCTAG 58.453 38.462 0.00 0.00 0.00 3.02
209 210 6.071051 GCAAACCAATCCCTCAAAATAACCTA 60.071 38.462 0.00 0.00 0.00 3.08
210 211 5.279960 GCAAACCAATCCCTCAAAATAACCT 60.280 40.000 0.00 0.00 0.00 3.50
211 212 4.935205 GCAAACCAATCCCTCAAAATAACC 59.065 41.667 0.00 0.00 0.00 2.85
212 213 4.625311 CGCAAACCAATCCCTCAAAATAAC 59.375 41.667 0.00 0.00 0.00 1.89
213 214 4.322349 CCGCAAACCAATCCCTCAAAATAA 60.322 41.667 0.00 0.00 0.00 1.40
214 215 3.194542 CCGCAAACCAATCCCTCAAAATA 59.805 43.478 0.00 0.00 0.00 1.40
215 216 2.028203 CCGCAAACCAATCCCTCAAAAT 60.028 45.455 0.00 0.00 0.00 1.82
216 217 1.342819 CCGCAAACCAATCCCTCAAAA 59.657 47.619 0.00 0.00 0.00 2.44
217 218 0.965439 CCGCAAACCAATCCCTCAAA 59.035 50.000 0.00 0.00 0.00 2.69
218 219 1.531739 GCCGCAAACCAATCCCTCAA 61.532 55.000 0.00 0.00 0.00 3.02
219 220 1.976474 GCCGCAAACCAATCCCTCA 60.976 57.895 0.00 0.00 0.00 3.86
220 221 0.393808 TAGCCGCAAACCAATCCCTC 60.394 55.000 0.00 0.00 0.00 4.30
221 222 0.394352 CTAGCCGCAAACCAATCCCT 60.394 55.000 0.00 0.00 0.00 4.20
222 223 0.393808 TCTAGCCGCAAACCAATCCC 60.394 55.000 0.00 0.00 0.00 3.85
223 224 1.604278 GATCTAGCCGCAAACCAATCC 59.396 52.381 0.00 0.00 0.00 3.01
224 225 1.261619 CGATCTAGCCGCAAACCAATC 59.738 52.381 0.00 0.00 0.00 2.67
225 226 1.134521 TCGATCTAGCCGCAAACCAAT 60.135 47.619 0.00 0.00 0.00 3.16
226 227 0.248012 TCGATCTAGCCGCAAACCAA 59.752 50.000 0.00 0.00 0.00 3.67
227 228 0.464036 ATCGATCTAGCCGCAAACCA 59.536 50.000 0.00 0.00 0.00 3.67
228 229 1.140816 GATCGATCTAGCCGCAAACC 58.859 55.000 18.29 0.00 0.00 3.27
229 230 0.778815 CGATCGATCTAGCCGCAAAC 59.221 55.000 22.43 0.00 0.00 2.93
230 231 0.318699 CCGATCGATCTAGCCGCAAA 60.319 55.000 22.43 0.00 0.00 3.68
231 232 1.285950 CCGATCGATCTAGCCGCAA 59.714 57.895 22.43 0.00 0.00 4.85
232 233 1.853114 GACCGATCGATCTAGCCGCA 61.853 60.000 22.43 0.00 0.00 5.69
233 234 1.154188 GACCGATCGATCTAGCCGC 60.154 63.158 22.43 3.32 0.00 6.53
234 235 0.805614 ATGACCGATCGATCTAGCCG 59.194 55.000 22.43 9.93 0.00 5.52
235 236 1.542030 ACATGACCGATCGATCTAGCC 59.458 52.381 22.43 7.64 0.00 3.93
236 237 2.726373 CGACATGACCGATCGATCTAGC 60.726 54.545 22.43 11.63 38.10 3.42
237 238 2.480802 ACGACATGACCGATCGATCTAG 59.519 50.000 22.43 15.76 39.16 2.43
238 239 2.490991 ACGACATGACCGATCGATCTA 58.509 47.619 22.43 0.00 39.16 1.98
239 240 1.309950 ACGACATGACCGATCGATCT 58.690 50.000 22.43 5.31 39.16 2.75
240 241 1.781429 CAACGACATGACCGATCGATC 59.219 52.381 18.66 15.68 39.16 3.69
241 242 1.134367 ACAACGACATGACCGATCGAT 59.866 47.619 18.66 0.00 39.16 3.59
242 243 0.524414 ACAACGACATGACCGATCGA 59.476 50.000 18.66 0.00 39.16 3.59
243 244 0.640262 CACAACGACATGACCGATCG 59.360 55.000 8.51 8.51 41.60 3.69
244 245 1.390123 CACACAACGACATGACCGATC 59.610 52.381 16.44 0.00 0.00 3.69
245 246 1.428448 CACACAACGACATGACCGAT 58.572 50.000 16.44 4.65 0.00 4.18
246 247 1.218875 GCACACAACGACATGACCGA 61.219 55.000 16.44 0.00 0.00 4.69
247 248 1.204062 GCACACAACGACATGACCG 59.796 57.895 0.00 5.14 0.00 4.79
248 249 1.204062 CGCACACAACGACATGACC 59.796 57.895 0.00 0.00 0.00 4.02
249 250 1.204062 CCGCACACAACGACATGAC 59.796 57.895 0.00 0.00 0.00 3.06
250 251 1.958715 CCCGCACACAACGACATGA 60.959 57.895 0.00 0.00 0.00 3.07
251 252 2.555782 CCCGCACACAACGACATG 59.444 61.111 0.00 0.00 0.00 3.21
252 253 3.353836 GCCCGCACACAACGACAT 61.354 61.111 0.00 0.00 0.00 3.06
254 255 3.869473 TAGGCCCGCACACAACGAC 62.869 63.158 0.00 0.00 0.00 4.34
255 256 3.617735 TAGGCCCGCACACAACGA 61.618 61.111 0.00 0.00 0.00 3.85
256 257 3.419759 GTAGGCCCGCACACAACG 61.420 66.667 0.00 0.00 0.00 4.10
257 258 3.419759 CGTAGGCCCGCACACAAC 61.420 66.667 0.00 0.00 0.00 3.32
266 267 4.397832 TTTCCCACGCGTAGGCCC 62.398 66.667 19.53 0.00 35.02 5.80
267 268 3.122971 GTTTCCCACGCGTAGGCC 61.123 66.667 19.53 5.52 35.02 5.19
268 269 3.484547 CGTTTCCCACGCGTAGGC 61.485 66.667 19.53 4.26 43.37 3.93
276 277 0.038618 GTGGAATTGCCGTTTCCCAC 60.039 55.000 0.00 0.00 41.68 4.61
277 278 0.178975 AGTGGAATTGCCGTTTCCCA 60.179 50.000 6.88 0.00 41.68 4.37
278 279 1.828979 TAGTGGAATTGCCGTTTCCC 58.171 50.000 6.88 0.00 41.68 3.97
279 280 4.082463 TGAATTAGTGGAATTGCCGTTTCC 60.082 41.667 0.00 3.18 42.52 3.13
280 281 5.054390 TGAATTAGTGGAATTGCCGTTTC 57.946 39.130 0.00 0.00 37.90 2.78
281 282 4.082245 CCTGAATTAGTGGAATTGCCGTTT 60.082 41.667 0.00 0.00 37.90 3.60
282 283 3.443681 CCTGAATTAGTGGAATTGCCGTT 59.556 43.478 0.00 0.00 37.90 4.44
283 284 3.016736 CCTGAATTAGTGGAATTGCCGT 58.983 45.455 0.00 0.00 37.90 5.68
284 285 2.223572 GCCTGAATTAGTGGAATTGCCG 60.224 50.000 0.00 0.00 37.90 5.69
285 286 2.101415 GGCCTGAATTAGTGGAATTGCC 59.899 50.000 0.00 0.00 37.90 4.52
286 287 2.760092 TGGCCTGAATTAGTGGAATTGC 59.240 45.455 3.32 0.00 37.90 3.56
287 288 4.261322 CGATGGCCTGAATTAGTGGAATTG 60.261 45.833 3.32 0.00 37.90 2.32
288 289 3.885297 CGATGGCCTGAATTAGTGGAATT 59.115 43.478 3.32 0.00 40.62 2.17
289 290 3.480470 CGATGGCCTGAATTAGTGGAAT 58.520 45.455 3.32 0.00 0.00 3.01
290 291 2.917933 CGATGGCCTGAATTAGTGGAA 58.082 47.619 3.32 0.00 0.00 3.53
291 292 1.475034 GCGATGGCCTGAATTAGTGGA 60.475 52.381 3.32 0.00 0.00 4.02
292 293 0.947244 GCGATGGCCTGAATTAGTGG 59.053 55.000 3.32 0.00 0.00 4.00
293 294 1.600957 CAGCGATGGCCTGAATTAGTG 59.399 52.381 3.32 0.00 41.24 2.74
294 295 1.486310 TCAGCGATGGCCTGAATTAGT 59.514 47.619 3.32 0.00 41.24 2.24
295 296 2.245159 TCAGCGATGGCCTGAATTAG 57.755 50.000 3.32 0.00 41.24 1.73
296 297 2.936919 ATCAGCGATGGCCTGAATTA 57.063 45.000 3.32 0.00 41.24 1.40
297 298 2.062971 AATCAGCGATGGCCTGAATT 57.937 45.000 3.32 0.00 41.24 2.17
298 299 2.062971 AAATCAGCGATGGCCTGAAT 57.937 45.000 3.32 0.00 41.24 2.57
299 300 2.092968 AGTAAATCAGCGATGGCCTGAA 60.093 45.455 3.32 0.00 41.24 3.02
300 301 1.486310 AGTAAATCAGCGATGGCCTGA 59.514 47.619 3.32 0.00 41.24 3.86
301 302 1.959042 AGTAAATCAGCGATGGCCTG 58.041 50.000 3.32 0.00 41.24 4.85
302 303 2.292267 CAAGTAAATCAGCGATGGCCT 58.708 47.619 3.32 0.00 41.24 5.19
303 304 1.268743 GCAAGTAAATCAGCGATGGCC 60.269 52.381 0.00 0.00 41.24 5.36
304 305 1.268743 GGCAAGTAAATCAGCGATGGC 60.269 52.381 0.00 0.00 40.37 4.40
305 306 1.334869 GGGCAAGTAAATCAGCGATGG 59.665 52.381 0.00 0.00 0.00 3.51
306 307 2.016318 TGGGCAAGTAAATCAGCGATG 58.984 47.619 0.00 0.00 0.00 3.84
307 308 2.418368 TGGGCAAGTAAATCAGCGAT 57.582 45.000 0.00 0.00 0.00 4.58
308 309 2.418368 ATGGGCAAGTAAATCAGCGA 57.582 45.000 0.00 0.00 0.00 4.93
309 310 3.627577 AGTAATGGGCAAGTAAATCAGCG 59.372 43.478 0.00 0.00 0.00 5.18
310 311 6.017852 GTCTAGTAATGGGCAAGTAAATCAGC 60.018 42.308 0.00 0.00 0.00 4.26
311 312 6.483640 GGTCTAGTAATGGGCAAGTAAATCAG 59.516 42.308 0.00 0.00 0.00 2.90
312 313 6.157994 AGGTCTAGTAATGGGCAAGTAAATCA 59.842 38.462 0.00 0.00 0.00 2.57
313 314 6.592870 AGGTCTAGTAATGGGCAAGTAAATC 58.407 40.000 0.00 0.00 0.00 2.17
314 315 6.576778 AGGTCTAGTAATGGGCAAGTAAAT 57.423 37.500 0.00 0.00 0.00 1.40
315 316 7.499200 TTAGGTCTAGTAATGGGCAAGTAAA 57.501 36.000 0.00 0.00 0.00 2.01
316 317 7.333323 GTTTAGGTCTAGTAATGGGCAAGTAA 58.667 38.462 0.00 0.00 0.00 2.24
317 318 6.406177 CGTTTAGGTCTAGTAATGGGCAAGTA 60.406 42.308 0.00 0.00 0.00 2.24
318 319 5.626116 CGTTTAGGTCTAGTAATGGGCAAGT 60.626 44.000 0.00 0.00 0.00 3.16
319 320 4.809426 CGTTTAGGTCTAGTAATGGGCAAG 59.191 45.833 0.00 0.00 0.00 4.01
320 321 4.223477 ACGTTTAGGTCTAGTAATGGGCAA 59.777 41.667 0.00 0.00 0.00 4.52
321 322 3.770933 ACGTTTAGGTCTAGTAATGGGCA 59.229 43.478 0.00 0.00 0.00 5.36
322 323 4.397481 ACGTTTAGGTCTAGTAATGGGC 57.603 45.455 0.00 0.00 0.00 5.36
323 324 6.319658 TCTGTACGTTTAGGTCTAGTAATGGG 59.680 42.308 0.00 0.00 0.00 4.00
324 325 7.148188 TGTCTGTACGTTTAGGTCTAGTAATGG 60.148 40.741 0.00 0.00 0.00 3.16
325 326 7.755591 TGTCTGTACGTTTAGGTCTAGTAATG 58.244 38.462 0.00 0.00 0.00 1.90
326 327 7.928307 TGTCTGTACGTTTAGGTCTAGTAAT 57.072 36.000 0.00 0.00 0.00 1.89
327 328 7.391554 ACATGTCTGTACGTTTAGGTCTAGTAA 59.608 37.037 0.00 0.00 32.49 2.24
328 329 6.881065 ACATGTCTGTACGTTTAGGTCTAGTA 59.119 38.462 0.00 0.00 32.49 1.82
329 330 5.709164 ACATGTCTGTACGTTTAGGTCTAGT 59.291 40.000 0.00 0.00 32.49 2.57
330 331 6.192234 ACATGTCTGTACGTTTAGGTCTAG 57.808 41.667 0.00 0.00 32.49 2.43
331 332 6.384224 CAACATGTCTGTACGTTTAGGTCTA 58.616 40.000 0.00 0.00 33.36 2.59
332 333 5.227908 CAACATGTCTGTACGTTTAGGTCT 58.772 41.667 0.00 0.00 33.36 3.85
333 334 4.143179 GCAACATGTCTGTACGTTTAGGTC 60.143 45.833 0.00 0.00 33.36 3.85
334 335 3.744426 GCAACATGTCTGTACGTTTAGGT 59.256 43.478 0.00 0.00 33.36 3.08
335 336 3.743911 TGCAACATGTCTGTACGTTTAGG 59.256 43.478 0.00 0.00 33.36 2.69
336 337 4.377022 GGTGCAACATGTCTGTACGTTTAG 60.377 45.833 16.58 0.00 39.98 1.85
337 338 3.495377 GGTGCAACATGTCTGTACGTTTA 59.505 43.478 16.58 0.00 39.98 2.01
338 339 2.289547 GGTGCAACATGTCTGTACGTTT 59.710 45.455 16.58 0.00 39.98 3.60
339 340 1.871039 GGTGCAACATGTCTGTACGTT 59.129 47.619 16.58 0.00 39.98 3.99
340 341 1.070134 AGGTGCAACATGTCTGTACGT 59.930 47.619 3.64 15.27 39.98 3.57
341 342 1.795768 AGGTGCAACATGTCTGTACG 58.204 50.000 3.64 0.00 39.98 3.67
342 343 5.880054 ATTTAGGTGCAACATGTCTGTAC 57.120 39.130 3.64 15.57 39.98 2.90
343 344 6.093495 GCTAATTTAGGTGCAACATGTCTGTA 59.907 38.462 3.64 0.00 39.98 2.74
344 345 5.106157 GCTAATTTAGGTGCAACATGTCTGT 60.106 40.000 3.64 0.00 39.98 3.41
345 346 5.335127 GCTAATTTAGGTGCAACATGTCTG 58.665 41.667 3.64 1.07 39.98 3.51
346 347 4.094887 CGCTAATTTAGGTGCAACATGTCT 59.905 41.667 3.64 0.00 39.98 3.41
347 348 4.342772 CGCTAATTTAGGTGCAACATGTC 58.657 43.478 3.64 0.00 39.98 3.06
348 349 3.427503 GCGCTAATTTAGGTGCAACATGT 60.428 43.478 3.64 0.00 39.98 3.21
349 350 3.108144 GCGCTAATTTAGGTGCAACATG 58.892 45.455 3.64 0.00 39.98 3.21
350 351 2.752354 TGCGCTAATTTAGGTGCAACAT 59.248 40.909 9.73 0.00 44.30 2.71
351 352 2.155279 TGCGCTAATTTAGGTGCAACA 58.845 42.857 9.73 0.00 44.30 3.33
352 353 2.477863 CCTGCGCTAATTTAGGTGCAAC 60.478 50.000 9.73 0.00 46.05 4.17
353 354 1.742831 CCTGCGCTAATTTAGGTGCAA 59.257 47.619 9.73 0.00 46.05 4.08
354 355 1.378531 CCTGCGCTAATTTAGGTGCA 58.621 50.000 9.73 11.46 44.92 4.57
355 356 0.663153 CCCTGCGCTAATTTAGGTGC 59.337 55.000 9.73 5.35 39.13 5.01
356 357 1.940613 GACCCTGCGCTAATTTAGGTG 59.059 52.381 9.73 2.72 0.00 4.00
357 358 1.557832 TGACCCTGCGCTAATTTAGGT 59.442 47.619 9.73 4.55 0.00 3.08
358 359 2.325583 TGACCCTGCGCTAATTTAGG 57.674 50.000 9.73 5.46 0.00 2.69
359 360 4.900635 AATTGACCCTGCGCTAATTTAG 57.099 40.909 9.73 0.00 0.00 1.85
360 361 5.652994 AAAATTGACCCTGCGCTAATTTA 57.347 34.783 9.73 0.00 32.46 1.40
361 362 4.535526 AAAATTGACCCTGCGCTAATTT 57.464 36.364 9.73 9.13 33.71 1.82
362 363 4.535526 AAAAATTGACCCTGCGCTAATT 57.464 36.364 9.73 3.49 0.00 1.40
380 381 5.636123 TCTGTGTATTAGGCCCTTGAAAAA 58.364 37.500 0.00 0.00 0.00 1.94
381 382 5.249780 TCTGTGTATTAGGCCCTTGAAAA 57.750 39.130 0.00 0.00 0.00 2.29
382 383 4.843728 CTCTGTGTATTAGGCCCTTGAAA 58.156 43.478 0.00 0.00 0.00 2.69
383 384 3.370527 GCTCTGTGTATTAGGCCCTTGAA 60.371 47.826 0.00 0.00 0.00 2.69
384 385 2.170607 GCTCTGTGTATTAGGCCCTTGA 59.829 50.000 0.00 0.00 0.00 3.02
385 386 2.092968 TGCTCTGTGTATTAGGCCCTTG 60.093 50.000 0.00 0.00 0.00 3.61
386 387 2.092914 GTGCTCTGTGTATTAGGCCCTT 60.093 50.000 0.00 0.00 0.00 3.95
387 388 1.486726 GTGCTCTGTGTATTAGGCCCT 59.513 52.381 0.00 0.00 0.00 5.19
388 389 1.209504 TGTGCTCTGTGTATTAGGCCC 59.790 52.381 0.00 0.00 0.00 5.80
389 390 2.280628 GTGTGCTCTGTGTATTAGGCC 58.719 52.381 0.00 0.00 0.00 5.19
390 391 2.972625 TGTGTGCTCTGTGTATTAGGC 58.027 47.619 0.00 0.00 0.00 3.93
391 392 5.163405 ACCTATGTGTGCTCTGTGTATTAGG 60.163 44.000 0.00 0.00 0.00 2.69
392 393 5.750547 CACCTATGTGTGCTCTGTGTATTAG 59.249 44.000 0.00 0.00 37.72 1.73
393 394 5.395214 CCACCTATGTGTGCTCTGTGTATTA 60.395 44.000 0.00 0.00 41.09 0.98
394 395 4.507710 CACCTATGTGTGCTCTGTGTATT 58.492 43.478 0.00 0.00 37.72 1.89
395 396 3.118629 CCACCTATGTGTGCTCTGTGTAT 60.119 47.826 0.00 0.00 41.09 2.29
396 397 2.233676 CCACCTATGTGTGCTCTGTGTA 59.766 50.000 0.00 0.00 41.09 2.90
397 398 1.002430 CCACCTATGTGTGCTCTGTGT 59.998 52.381 0.00 0.00 41.09 3.72
398 399 1.676916 CCCACCTATGTGTGCTCTGTG 60.677 57.143 0.00 0.00 41.09 3.66
399 400 0.615331 CCCACCTATGTGTGCTCTGT 59.385 55.000 0.00 0.00 41.09 3.41
400 401 0.107508 CCCCACCTATGTGTGCTCTG 60.108 60.000 0.00 0.00 41.09 3.35
401 402 1.274703 CCCCCACCTATGTGTGCTCT 61.275 60.000 0.00 0.00 41.09 4.09
402 403 1.224592 CCCCCACCTATGTGTGCTC 59.775 63.158 0.00 0.00 41.09 4.26
403 404 2.983879 GCCCCCACCTATGTGTGCT 61.984 63.158 0.00 0.00 41.09 4.40
404 405 2.440247 GCCCCCACCTATGTGTGC 60.440 66.667 0.00 0.00 41.09 4.57
405 406 2.275418 GGCCCCCACCTATGTGTG 59.725 66.667 0.00 0.00 41.09 3.82
406 407 3.021263 GGGCCCCCACCTATGTGT 61.021 66.667 12.23 0.00 41.09 3.72
407 408 3.820843 GGGGCCCCCACCTATGTG 61.821 72.222 33.01 0.00 44.65 3.21
416 417 3.886001 CGGAACATAGGGGCCCCC 61.886 72.222 38.68 20.91 45.90 5.40
417 418 3.886001 CCGGAACATAGGGGCCCC 61.886 72.222 35.90 35.90 0.00 5.80
418 419 3.886001 CCCGGAACATAGGGGCCC 61.886 72.222 17.12 17.12 43.90 5.80
423 424 3.886001 GGGCCCCCGGAACATAGG 61.886 72.222 12.23 0.00 0.00 2.57
454 455 3.023116 TTGATGAGGGGGCAGGGG 61.023 66.667 0.00 0.00 0.00 4.79
455 456 2.002977 TCTTGATGAGGGGGCAGGG 61.003 63.158 0.00 0.00 0.00 4.45
456 457 1.225704 GTCTTGATGAGGGGGCAGG 59.774 63.158 0.00 0.00 0.00 4.85
457 458 1.225704 GGTCTTGATGAGGGGGCAG 59.774 63.158 0.00 0.00 0.00 4.85
458 459 2.669133 CGGTCTTGATGAGGGGGCA 61.669 63.158 0.00 0.00 0.00 5.36
459 460 2.190578 CGGTCTTGATGAGGGGGC 59.809 66.667 0.00 0.00 0.00 5.80
460 461 2.746375 CCCGGTCTTGATGAGGGGG 61.746 68.421 0.00 0.00 38.44 5.40
461 462 2.911143 CCCGGTCTTGATGAGGGG 59.089 66.667 0.00 0.00 38.44 4.79
462 463 2.190578 GCCCGGTCTTGATGAGGG 59.809 66.667 0.00 0.00 44.72 4.30
463 464 2.190578 GGCCCGGTCTTGATGAGG 59.809 66.667 0.00 0.00 0.00 3.86
464 465 1.153289 CAGGCCCGGTCTTGATGAG 60.153 63.158 0.00 0.00 0.00 2.90
465 466 2.989639 CAGGCCCGGTCTTGATGA 59.010 61.111 0.00 0.00 0.00 2.92
466 467 2.825836 GCAGGCCCGGTCTTGATG 60.826 66.667 0.00 0.00 0.00 3.07
467 468 2.615227 GATGCAGGCCCGGTCTTGAT 62.615 60.000 0.00 0.00 0.00 2.57
468 469 3.329542 GATGCAGGCCCGGTCTTGA 62.330 63.158 0.00 0.00 0.00 3.02
469 470 2.825836 GATGCAGGCCCGGTCTTG 60.826 66.667 0.00 0.00 0.00 3.02
470 471 4.115199 GGATGCAGGCCCGGTCTT 62.115 66.667 0.00 0.00 0.00 3.01
476 477 2.456287 GATACGAGGGATGCAGGCCC 62.456 65.000 17.57 17.57 46.40 5.80
477 478 1.004440 GATACGAGGGATGCAGGCC 60.004 63.158 0.00 0.00 0.00 5.19
478 479 1.373497 CGATACGAGGGATGCAGGC 60.373 63.158 0.00 0.00 0.00 4.85
479 480 1.373497 GCGATACGAGGGATGCAGG 60.373 63.158 0.00 0.00 0.00 4.85
480 481 1.373497 GGCGATACGAGGGATGCAG 60.373 63.158 0.00 0.00 0.00 4.41
481 482 2.734591 GGCGATACGAGGGATGCA 59.265 61.111 0.00 0.00 0.00 3.96
482 483 2.048127 GGGCGATACGAGGGATGC 60.048 66.667 0.00 0.00 0.00 3.91
483 484 1.544825 ATGGGGCGATACGAGGGATG 61.545 60.000 0.00 0.00 0.00 3.51
484 485 0.836400 AATGGGGCGATACGAGGGAT 60.836 55.000 0.00 0.00 0.00 3.85
485 486 1.458777 AATGGGGCGATACGAGGGA 60.459 57.895 0.00 0.00 0.00 4.20
486 487 1.004918 GAATGGGGCGATACGAGGG 60.005 63.158 0.00 0.00 0.00 4.30
487 488 1.372997 CGAATGGGGCGATACGAGG 60.373 63.158 0.00 0.00 0.00 4.63
488 489 0.387367 CTCGAATGGGGCGATACGAG 60.387 60.000 0.00 0.00 40.39 4.18
489 490 1.658114 CTCGAATGGGGCGATACGA 59.342 57.895 0.00 0.00 37.13 3.43
490 491 2.022129 GCTCGAATGGGGCGATACG 61.022 63.158 0.00 0.00 37.13 3.06
491 492 0.946221 CAGCTCGAATGGGGCGATAC 60.946 60.000 0.00 0.00 37.13 2.24
492 493 1.112916 TCAGCTCGAATGGGGCGATA 61.113 55.000 0.00 0.00 37.13 2.92
493 494 2.109799 CAGCTCGAATGGGGCGAT 59.890 61.111 0.00 0.00 37.13 4.58
494 495 3.074369 TCAGCTCGAATGGGGCGA 61.074 61.111 0.00 0.00 36.23 5.54
495 496 2.892425 GTCAGCTCGAATGGGGCG 60.892 66.667 0.00 0.00 0.00 6.13
496 497 2.514824 GGTCAGCTCGAATGGGGC 60.515 66.667 0.00 0.00 0.00 5.80
497 498 2.202932 CGGTCAGCTCGAATGGGG 60.203 66.667 0.00 0.00 0.00 4.96
498 499 2.202932 CCGGTCAGCTCGAATGGG 60.203 66.667 0.00 0.00 0.00 4.00
499 500 2.892425 GCCGGTCAGCTCGAATGG 60.892 66.667 1.90 0.00 0.00 3.16
500 501 1.493950 GATGCCGGTCAGCTCGAATG 61.494 60.000 1.90 0.00 0.00 2.67
501 502 1.227380 GATGCCGGTCAGCTCGAAT 60.227 57.895 1.90 0.00 0.00 3.34
512 513 0.979665 AGGGATATGAGTGATGCCGG 59.020 55.000 0.00 0.00 39.64 6.13
514 515 1.980765 TGGAGGGATATGAGTGATGCC 59.019 52.381 0.00 0.00 35.12 4.40
554 555 3.928375 GACTTAACGTGGGAATTTAGCGA 59.072 43.478 0.00 0.00 0.00 4.93
556 557 3.928375 TCGACTTAACGTGGGAATTTAGC 59.072 43.478 0.00 0.00 34.70 3.09
580 2734 6.688637 TTCCAGATGCAGATCTTTATGTTG 57.311 37.500 0.00 0.00 36.75 3.33
606 2760 4.081531 TCTGATTCGGGGTATACGTGTTTT 60.082 41.667 0.00 0.00 0.00 2.43
613 2809 5.010933 TCTCTGATCTGATTCGGGGTATAC 58.989 45.833 2.43 0.00 0.00 1.47
644 2840 4.067896 TGCTTCTCTTTGATTCGCTCTTT 58.932 39.130 0.00 0.00 0.00 2.52
645 2841 3.668447 TGCTTCTCTTTGATTCGCTCTT 58.332 40.909 0.00 0.00 0.00 2.85
646 2842 3.325293 TGCTTCTCTTTGATTCGCTCT 57.675 42.857 0.00 0.00 0.00 4.09
775 2977 3.182590 TTGGTTCGGCTCTGCTGCT 62.183 57.895 0.00 0.00 34.49 4.24
1101 3316 1.129064 GAGACAGACGAGTCGGAGAAC 59.871 57.143 18.30 5.42 43.24 3.01
1113 3328 0.972883 ACTGCCAAGAGGAGACAGAC 59.027 55.000 0.00 0.00 36.89 3.51
1137 3352 0.253327 ATTGGCGAAGGAGGAGGAAC 59.747 55.000 0.00 0.00 0.00 3.62
1138 3353 0.253044 CATTGGCGAAGGAGGAGGAA 59.747 55.000 0.00 0.00 0.00 3.36
1141 3356 0.462759 GTCCATTGGCGAAGGAGGAG 60.463 60.000 0.00 0.00 30.78 3.69
1146 3361 0.742990 TAAGCGTCCATTGGCGAAGG 60.743 55.000 19.24 1.83 0.00 3.46
1160 3375 0.021610 CACGAAGCGTAACGTAAGCG 59.978 55.000 0.00 0.00 38.32 4.68
1195 3410 4.357947 TCACGACCTCCGCTGCAC 62.358 66.667 0.00 0.00 43.32 4.57
1289 3504 2.409975 TGAACGGGAGTCAAATCGAAC 58.590 47.619 0.00 0.00 46.69 3.95
1362 3577 1.321474 AGCACAACATTGACACCAGG 58.679 50.000 0.00 0.00 0.00 4.45
1418 3635 1.153823 GCTTCGAGACGCTAAGCCA 60.154 57.895 4.39 0.00 39.74 4.75
1719 3938 4.321899 GGTGGCAATATCAAGAAAGCACAA 60.322 41.667 0.00 0.00 0.00 3.33
1724 3943 4.396166 AGTTCGGTGGCAATATCAAGAAAG 59.604 41.667 0.00 0.00 0.00 2.62
1867 4086 9.987726 ACTACCTAACTTAGTAACTAACTCCAT 57.012 33.333 0.00 0.00 39.80 3.41
2025 4245 2.199652 CGCACCAAAGGGCCTTCAA 61.200 57.895 21.20 0.00 37.90 2.69
2202 4422 4.014406 AGCAAACAATCATGCATCTCAGA 58.986 39.130 0.00 0.00 44.95 3.27
2211 4431 3.556365 TGCAAACACAGCAAACAATCATG 59.444 39.130 0.00 0.00 39.39 3.07
2218 4438 4.358851 TCTGTAATGCAAACACAGCAAAC 58.641 39.130 16.68 0.00 46.27 2.93
2224 4444 2.884012 CCACCTCTGTAATGCAAACACA 59.116 45.455 0.00 0.00 0.00 3.72
2358 4578 6.481644 GTGAAGACTTTGTCAGAACTTCATCT 59.518 38.462 0.00 0.00 43.65 2.90
2585 4809 6.833342 TTTCGTTCTGTAAGGTGTACTTTC 57.167 37.500 0.00 0.00 40.64 2.62
2604 4828 2.542411 GCTGGGCTATTTCTGCATTTCG 60.542 50.000 0.00 0.00 0.00 3.46
2605 4829 2.692041 AGCTGGGCTATTTCTGCATTTC 59.308 45.455 0.00 0.00 36.99 2.17
2620 4844 4.331968 TCAACATTACAGGTAAAGCTGGG 58.668 43.478 13.29 3.28 0.00 4.45
2669 4893 9.895138 GACCATAAATAGAAAAGTAAGGGTACA 57.105 33.333 0.00 0.00 32.12 2.90
2686 4918 7.886629 ATTGCTTAGTGTGATGACCATAAAT 57.113 32.000 0.00 0.00 0.00 1.40
2779 5011 4.139786 CACCAGCTACAGCAAATGGATAT 58.860 43.478 13.27 0.00 45.16 1.63
2855 5087 7.047271 ACAATGATAAGCACAAAACTTTTGGT 58.953 30.769 16.79 0.00 0.00 3.67
2986 5218 3.508845 AGCTTTAGGAAAACAGCTCCA 57.491 42.857 0.00 0.00 35.20 3.86
3042 5275 6.227298 TGTAGATTCTCATCTCCTTTCCAC 57.773 41.667 0.00 0.00 40.53 4.02
3050 5283 6.147864 ACAGCTCTTGTAGATTCTCATCTC 57.852 41.667 0.00 0.00 40.53 2.75
3053 5286 7.044798 GGTAAACAGCTCTTGTAGATTCTCAT 58.955 38.462 0.00 0.00 39.73 2.90
3099 5333 5.706833 TCATCACAAGCATACATTGTTCAGT 59.293 36.000 0.00 0.00 38.80 3.41
3109 5343 6.316140 TGGTAAGAACATCATCACAAGCATAC 59.684 38.462 0.00 0.00 0.00 2.39
3124 5358 4.942761 AAGTCCGTAAGTGGTAAGAACA 57.057 40.909 0.00 0.00 0.00 3.18
3125 5359 5.164233 GGTAAGTCCGTAAGTGGTAAGAAC 58.836 45.833 0.00 0.00 0.00 3.01
3126 5360 5.391312 GGTAAGTCCGTAAGTGGTAAGAA 57.609 43.478 0.00 0.00 0.00 2.52
3173 5415 6.179040 AGGAGAATTCAGAGAATGTTCCTTG 58.821 40.000 8.44 0.00 0.00 3.61
3179 5421 7.637511 ACCATAAAGGAGAATTCAGAGAATGT 58.362 34.615 8.44 0.00 41.22 2.71
3181 5423 7.092264 TGGACCATAAAGGAGAATTCAGAGAAT 60.092 37.037 8.44 0.00 41.22 2.40
3204 5446 8.537728 AAAAAGTATGATATGATGGCTTTGGA 57.462 30.769 7.09 0.00 0.00 3.53
3238 5496 8.112016 TCAGGAGTATTAGTAGTATGTGATGC 57.888 38.462 0.00 0.00 0.00 3.91
3312 5570 7.573710 AGGTTATGCAGTACAGGATATCAAAA 58.426 34.615 4.83 0.00 0.00 2.44
3461 5722 3.313012 TCTTGGTGAAGTGTCGGTATG 57.687 47.619 0.00 0.00 0.00 2.39
3542 5803 5.828328 CAGGTCAGGAAGGACTTTTAAGTTT 59.172 40.000 0.00 0.00 39.88 2.66
3550 5811 4.020128 GTGTAATCAGGTCAGGAAGGACTT 60.020 45.833 0.00 0.00 37.91 3.01
3582 5843 4.022935 GTGGATTTCATGACTGTCTGCAAA 60.023 41.667 9.51 5.41 0.00 3.68
3654 5915 3.245797 CTTGTACGATGGCATATCCTCG 58.754 50.000 0.00 2.38 39.63 4.63
3930 6191 1.295792 CACACACACACACCCTACAC 58.704 55.000 0.00 0.00 0.00 2.90
3973 6242 5.836898 AGGACTACATTCCGTGGTATTATGA 59.163 40.000 0.00 0.00 39.83 2.15
4096 6369 8.513774 GGTTCGGTTCAGTTTATTTTTGGTATA 58.486 33.333 0.00 0.00 0.00 1.47
4264 6542 9.103048 GAAAAATGACTACTTGTATCGTTGTTG 57.897 33.333 0.00 0.00 0.00 3.33
4547 6825 9.638239 TCGGTATATACCAAATTATTTCGGTAC 57.362 33.333 27.58 9.44 46.80 3.34
4633 6912 3.762823 TGGTTTGGTTTGTACGGTTTTCT 59.237 39.130 0.00 0.00 0.00 2.52
4644 6923 1.596727 CGGTTTGCATGGTTTGGTTTG 59.403 47.619 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.