Multiple sequence alignment - TraesCS6B01G281800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G281800 chr6B 100.000 3608 0 0 1 3608 507796971 507793364 0.000000e+00 6663.0
1 TraesCS6B01G281800 chr6D 94.441 3238 123 27 126 3321 316563334 316566556 0.000000e+00 4929.0
2 TraesCS6B01G281800 chr6A 94.510 2277 77 22 655 2895 454546008 454548272 0.000000e+00 3469.0
3 TraesCS6B01G281800 chr6A 94.824 425 16 5 2892 3314 454548347 454548767 0.000000e+00 658.0
4 TraesCS6B01G281800 chr6A 89.362 517 31 9 126 627 454545504 454546011 2.360000e-176 628.0
5 TraesCS6B01G281800 chr7A 84.167 120 18 1 3489 3608 486086774 486086656 8.190000e-22 115.0
6 TraesCS6B01G281800 chr1D 89.062 64 2 4 3546 3608 211490207 211490148 1.390000e-09 75.0
7 TraesCS6B01G281800 chr3B 87.302 63 7 1 3546 3608 450236657 450236596 1.800000e-08 71.3
8 TraesCS6B01G281800 chr1B 84.127 63 10 0 3546 3608 553454218 553454280 1.080000e-05 62.1
9 TraesCS6B01G281800 chr3D 96.970 33 1 0 1734 1766 351287637 351287669 5.030000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G281800 chr6B 507793364 507796971 3607 True 6663 6663 100.000000 1 3608 1 chr6B.!!$R1 3607
1 TraesCS6B01G281800 chr6D 316563334 316566556 3222 False 4929 4929 94.441000 126 3321 1 chr6D.!!$F1 3195
2 TraesCS6B01G281800 chr6A 454545504 454548767 3263 False 1585 3469 92.898667 126 3314 3 chr6A.!!$F1 3188

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.036306 ATGGACACCGTGGTTTCCTC 59.964 55.0 21.53 1.11 43.35 3.71 F
212 213 0.179040 GGACACCGTGGTTTCCTCAA 60.179 55.0 15.48 0.00 40.68 3.02 F
486 497 0.317160 TCGACATGGTGCTTCGTCTT 59.683 50.0 0.00 0.00 34.35 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1553 4.361971 AGCGGGTCGAGGAGTCCA 62.362 66.667 12.86 0.00 0.00 4.02 R
2232 2282 3.993376 GACCATGTCGCCCGCGTTA 62.993 63.158 4.92 0.00 40.74 3.18 R
2677 2728 7.888250 GGAAATGAGATATTTTCCTGGAACT 57.112 36.000 9.04 2.16 44.86 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.738645 AGAAGCTCTTCTCAAAAGTAAAAAGA 57.261 30.769 6.33 0.00 46.13 2.52
53 54 9.178758 AGAAGCTCTTCTCAAAAGTAAAAAGAA 57.821 29.630 6.33 0.00 46.13 2.52
54 55 9.958234 GAAGCTCTTCTCAAAAGTAAAAAGAAT 57.042 29.630 2.55 0.00 36.69 2.40
84 85 9.778741 ATAAGAAGTTATGAACAGTCAAAGACA 57.221 29.630 0.00 0.00 37.30 3.41
85 86 7.484035 AGAAGTTATGAACAGTCAAAGACAC 57.516 36.000 0.00 0.00 37.30 3.67
86 87 6.483640 AGAAGTTATGAACAGTCAAAGACACC 59.516 38.462 0.00 0.00 37.30 4.16
87 88 5.930135 AGTTATGAACAGTCAAAGACACCT 58.070 37.500 0.00 0.00 37.30 4.00
88 89 5.992217 AGTTATGAACAGTCAAAGACACCTC 59.008 40.000 0.00 0.00 37.30 3.85
89 90 2.821546 TGAACAGTCAAAGACACCTCG 58.178 47.619 0.00 0.00 34.60 4.63
90 91 2.135933 GAACAGTCAAAGACACCTCGG 58.864 52.381 0.00 0.00 34.60 4.63
91 92 0.393077 ACAGTCAAAGACACCTCGGG 59.607 55.000 0.00 0.00 34.60 5.14
92 93 0.393077 CAGTCAAAGACACCTCGGGT 59.607 55.000 0.00 0.00 34.60 5.28
101 102 2.918802 ACCTCGGGTGTTACGGCA 60.919 61.111 0.00 0.00 32.98 5.69
102 103 2.288025 ACCTCGGGTGTTACGGCAT 61.288 57.895 0.00 0.00 32.98 4.40
103 104 1.813753 CCTCGGGTGTTACGGCATG 60.814 63.158 0.00 0.00 0.00 4.06
104 105 1.813753 CTCGGGTGTTACGGCATGG 60.814 63.158 0.00 0.00 0.00 3.66
105 106 2.233605 CTCGGGTGTTACGGCATGGA 62.234 60.000 0.00 0.00 0.00 3.41
106 107 1.376166 CGGGTGTTACGGCATGGAA 60.376 57.895 0.00 0.00 0.00 3.53
107 108 1.641123 CGGGTGTTACGGCATGGAAC 61.641 60.000 0.00 0.00 0.00 3.62
108 109 1.310216 GGGTGTTACGGCATGGAACC 61.310 60.000 0.00 0.00 0.00 3.62
109 110 1.310216 GGTGTTACGGCATGGAACCC 61.310 60.000 0.00 0.00 0.00 4.11
110 111 0.322187 GTGTTACGGCATGGAACCCT 60.322 55.000 0.00 0.00 0.00 4.34
111 112 1.065998 GTGTTACGGCATGGAACCCTA 60.066 52.381 0.00 0.00 0.00 3.53
112 113 1.065998 TGTTACGGCATGGAACCCTAC 60.066 52.381 0.00 0.00 0.00 3.18
113 114 1.208776 GTTACGGCATGGAACCCTACT 59.791 52.381 0.00 0.00 0.00 2.57
114 115 1.117150 TACGGCATGGAACCCTACTC 58.883 55.000 0.00 0.00 0.00 2.59
115 116 1.227263 CGGCATGGAACCCTACTCG 60.227 63.158 0.00 0.00 0.00 4.18
116 117 1.905512 GGCATGGAACCCTACTCGT 59.094 57.895 0.00 0.00 0.00 4.18
117 118 0.252197 GGCATGGAACCCTACTCGTT 59.748 55.000 0.00 0.00 0.00 3.85
118 119 1.653151 GCATGGAACCCTACTCGTTC 58.347 55.000 0.00 0.00 39.12 3.95
123 124 2.651135 GAACCCTACTCGTTCCTCAC 57.349 55.000 0.00 0.00 34.75 3.51
124 125 1.204231 GAACCCTACTCGTTCCTCACC 59.796 57.143 0.00 0.00 34.75 4.02
142 143 1.302192 CAAAAACTCCCGCCCTCGA 60.302 57.895 0.00 0.00 38.10 4.04
148 149 4.671590 TCCCGCCCTCGACACTCA 62.672 66.667 0.00 0.00 38.10 3.41
150 151 2.579201 CCGCCCTCGACACTCATT 59.421 61.111 0.00 0.00 38.10 2.57
168 169 0.043183 TTGGAGCAGGGAGGAGATCA 59.957 55.000 0.00 0.00 0.00 2.92
176 177 0.965439 GGGAGGAGATCAGATCACCG 59.035 60.000 18.28 0.00 43.70 4.94
209 210 0.250727 CATGGACACCGTGGTTTCCT 60.251 55.000 21.53 7.75 43.35 3.36
210 211 0.036306 ATGGACACCGTGGTTTCCTC 59.964 55.000 21.53 1.11 43.35 3.71
211 212 1.338890 TGGACACCGTGGTTTCCTCA 61.339 55.000 21.53 3.44 43.35 3.86
212 213 0.179040 GGACACCGTGGTTTCCTCAA 60.179 55.000 15.48 0.00 40.68 3.02
220 221 4.202111 ACCGTGGTTTCCTCAATCAAAAAG 60.202 41.667 0.00 0.00 0.00 2.27
221 222 4.037446 CCGTGGTTTCCTCAATCAAAAAGA 59.963 41.667 0.00 0.00 0.00 2.52
223 224 6.039616 CGTGGTTTCCTCAATCAAAAAGAAA 58.960 36.000 0.00 0.00 0.00 2.52
224 225 6.533367 CGTGGTTTCCTCAATCAAAAAGAAAA 59.467 34.615 0.00 0.00 0.00 2.29
256 257 5.726980 ATACACGGTAGGTTTGACTAACA 57.273 39.130 2.26 0.00 38.55 2.41
319 320 4.206609 GCTTTGTCGCGGACTAGTTAATAG 59.793 45.833 6.13 0.00 37.53 1.73
395 396 1.961277 CGGTGTCAGTGTGAAGCCC 60.961 63.158 0.00 0.00 0.00 5.19
457 458 6.334202 AGAGGAAGCTCGACAAATACTAAAG 58.666 40.000 0.00 0.00 0.00 1.85
458 459 6.153000 AGAGGAAGCTCGACAAATACTAAAGA 59.847 38.462 0.00 0.00 0.00 2.52
460 461 6.590677 AGGAAGCTCGACAAATACTAAAGAAC 59.409 38.462 0.00 0.00 0.00 3.01
462 463 4.863131 AGCTCGACAAATACTAAAGAACCG 59.137 41.667 0.00 0.00 0.00 4.44
486 497 0.317160 TCGACATGGTGCTTCGTCTT 59.683 50.000 0.00 0.00 34.35 3.01
571 586 9.534565 CCATTAGACTAGTACTAGTACGTACAA 57.465 37.037 30.80 18.89 45.63 2.41
599 614 4.218578 CATCTCGGCGAGGCTGCT 62.219 66.667 33.93 12.99 34.49 4.24
707 730 1.956297 GCTCTAGCCGAGTCTCTGTA 58.044 55.000 0.00 0.00 41.98 2.74
710 733 1.206610 TCTAGCCGAGTCTCTGTACGT 59.793 52.381 0.00 0.00 0.00 3.57
711 734 2.428530 TCTAGCCGAGTCTCTGTACGTA 59.571 50.000 0.00 0.00 0.00 3.57
880 921 1.151413 TCTTCCCCCTCCCGCTATATT 59.849 52.381 0.00 0.00 0.00 1.28
919 960 1.263776 GTGTCTGTCATCTCGCTTCG 58.736 55.000 0.00 0.00 0.00 3.79
936 980 1.376543 TCGTTACCAGTAGCTCGGAG 58.623 55.000 0.00 0.00 0.00 4.63
949 993 4.069232 CGGAGTCGGAGGCTTGCA 62.069 66.667 0.00 0.00 45.33 4.08
959 1005 0.933796 GAGGCTTGCAATCGAGTAGC 59.066 55.000 0.00 0.00 0.00 3.58
969 1015 0.965439 ATCGAGTAGCTGATCCTGCC 59.035 55.000 0.00 0.00 0.00 4.85
971 1017 0.678395 CGAGTAGCTGATCCTGCCAT 59.322 55.000 0.00 0.00 0.00 4.40
973 1019 2.352225 CGAGTAGCTGATCCTGCCATAC 60.352 54.545 0.00 2.80 0.00 2.39
987 1037 7.381789 TCCTGCCATACATAACCTATTGTTA 57.618 36.000 0.00 0.00 43.35 2.41
994 1044 8.145767 CCATACATAACCTATTGTTAACGGAGA 58.854 37.037 0.26 0.00 42.51 3.71
1017 1067 2.751436 ATGTCAATTGCCGCGGCT 60.751 55.556 45.79 28.60 42.51 5.52
1300 1350 0.744414 GCAGGAGCCGCTTAACATCA 60.744 55.000 0.00 0.00 33.58 3.07
1935 1985 3.746957 GAGGATCCCAAGGTGGCT 58.253 61.111 8.55 0.00 35.79 4.75
2232 2282 1.736645 CAACGTCCTCCGCATCGTT 60.737 57.895 0.00 0.00 45.16 3.85
2250 2300 3.993376 TAACGCGGGCGACATGGTC 62.993 63.158 20.98 0.00 42.83 4.02
2616 2666 1.024579 GCCCGTCATGACCAAATCGT 61.025 55.000 20.03 0.00 0.00 3.73
2677 2728 1.669440 GTTAGTCGGCAGGGTGTCA 59.331 57.895 0.00 0.00 0.00 3.58
2745 2802 5.313520 TGCATGTACAGGAAAATCATGTG 57.686 39.130 12.53 0.00 41.84 3.21
2771 2828 3.623060 GTGCGTGACATAATTGATCAGGT 59.377 43.478 0.00 0.00 32.23 4.00
2885 2951 1.068333 CCGTGCATTCTCCAAAACAGG 60.068 52.381 0.00 0.00 0.00 4.00
2925 3069 4.453136 TCCGACAAAGGGTAGAATTTTTCG 59.547 41.667 0.00 0.00 37.98 3.46
3163 3312 6.709397 CGAACCTCCCTTTTTAGTCTTTTACT 59.291 38.462 0.00 0.00 42.62 2.24
3164 3313 7.874528 CGAACCTCCCTTTTTAGTCTTTTACTA 59.125 37.037 0.00 0.00 39.80 1.82
3165 3314 9.217278 GAACCTCCCTTTTTAGTCTTTTACTAG 57.783 37.037 0.00 0.00 41.70 2.57
3298 3449 4.240096 CCCAGTGTCATTTTCAGCAAATC 58.760 43.478 0.00 0.00 32.24 2.17
3323 3474 2.771435 TGCATCGGAGCATGAAGTG 58.229 52.632 0.00 0.00 40.11 3.16
3324 3475 0.745486 TGCATCGGAGCATGAAGTGG 60.745 55.000 0.00 0.00 40.11 4.00
3325 3476 2.020131 CATCGGAGCATGAAGTGGC 58.980 57.895 0.00 0.00 0.00 5.01
3326 3477 0.463295 CATCGGAGCATGAAGTGGCT 60.463 55.000 0.00 0.00 44.48 4.75
3327 3478 0.463295 ATCGGAGCATGAAGTGGCTG 60.463 55.000 0.00 0.00 41.22 4.85
3328 3479 2.758089 CGGAGCATGAAGTGGCTGC 61.758 63.158 0.00 0.00 43.95 5.25
3330 3481 0.107508 GGAGCATGAAGTGGCTGCTA 60.108 55.000 0.00 0.00 45.79 3.49
3331 3482 1.476471 GGAGCATGAAGTGGCTGCTAT 60.476 52.381 0.00 0.00 45.79 2.97
3332 3483 1.602851 GAGCATGAAGTGGCTGCTATG 59.397 52.381 0.00 0.00 45.79 2.23
3333 3484 0.666913 GCATGAAGTGGCTGCTATGG 59.333 55.000 0.00 0.00 33.15 2.74
3334 3485 2.020694 GCATGAAGTGGCTGCTATGGT 61.021 52.381 0.00 0.00 33.15 3.55
3335 3486 2.372264 CATGAAGTGGCTGCTATGGTT 58.628 47.619 0.00 0.00 0.00 3.67
3336 3487 3.544684 CATGAAGTGGCTGCTATGGTTA 58.455 45.455 0.00 0.00 0.00 2.85
3337 3488 3.931907 TGAAGTGGCTGCTATGGTTAT 57.068 42.857 0.00 0.00 0.00 1.89
3338 3489 5.308014 CATGAAGTGGCTGCTATGGTTATA 58.692 41.667 0.00 0.00 0.00 0.98
3339 3490 5.366482 TGAAGTGGCTGCTATGGTTATAA 57.634 39.130 0.00 0.00 0.00 0.98
3340 3491 5.750524 TGAAGTGGCTGCTATGGTTATAAA 58.249 37.500 0.00 0.00 0.00 1.40
3341 3492 5.588648 TGAAGTGGCTGCTATGGTTATAAAC 59.411 40.000 0.00 0.00 0.00 2.01
3342 3493 5.373812 AGTGGCTGCTATGGTTATAAACT 57.626 39.130 1.50 0.00 0.00 2.66
3343 3494 6.494666 AGTGGCTGCTATGGTTATAAACTA 57.505 37.500 1.50 0.00 0.00 2.24
3344 3495 6.525629 AGTGGCTGCTATGGTTATAAACTAG 58.474 40.000 1.50 2.93 0.00 2.57
3345 3496 6.099845 AGTGGCTGCTATGGTTATAAACTAGT 59.900 38.462 1.50 0.00 0.00 2.57
3346 3497 7.289317 AGTGGCTGCTATGGTTATAAACTAGTA 59.711 37.037 1.50 0.90 0.00 1.82
3347 3498 7.599245 GTGGCTGCTATGGTTATAAACTAGTAG 59.401 40.741 14.76 14.76 30.43 2.57
3348 3499 7.507956 TGGCTGCTATGGTTATAAACTAGTAGA 59.492 37.037 19.45 6.15 29.42 2.59
3349 3500 8.365647 GGCTGCTATGGTTATAAACTAGTAGAA 58.634 37.037 19.45 8.12 29.42 2.10
3350 3501 9.760077 GCTGCTATGGTTATAAACTAGTAGAAA 57.240 33.333 19.45 6.57 29.42 2.52
3361 3512 8.997621 ATAAACTAGTAGAAAATTGCTGACGA 57.002 30.769 3.59 0.00 0.00 4.20
3362 3513 7.724305 AAACTAGTAGAAAATTGCTGACGAA 57.276 32.000 3.59 0.00 0.00 3.85
3363 3514 6.952935 ACTAGTAGAAAATTGCTGACGAAG 57.047 37.500 3.59 0.00 0.00 3.79
3390 3541 2.212922 CGTAAGAAGTTGCTTCACGC 57.787 50.000 10.91 0.76 42.37 5.34
3391 3542 1.525197 CGTAAGAAGTTGCTTCACGCA 59.475 47.619 10.91 0.00 45.10 5.24
3392 3543 2.659291 CGTAAGAAGTTGCTTCACGCAC 60.659 50.000 10.91 3.10 46.21 5.34
3393 3544 5.969215 CGTAAGAAGTTGCTTCACGCACG 62.969 52.174 10.91 9.65 46.21 5.34
3398 3549 2.202810 TGCTTCACGCACGACACA 60.203 55.556 0.00 0.00 45.47 3.72
3399 3550 2.237066 TGCTTCACGCACGACACAG 61.237 57.895 0.00 0.00 45.47 3.66
3400 3551 2.237751 GCTTCACGCACGACACAGT 61.238 57.895 0.00 0.00 38.92 3.55
3401 3552 1.762222 GCTTCACGCACGACACAGTT 61.762 55.000 0.00 0.00 38.92 3.16
3402 3553 0.650512 CTTCACGCACGACACAGTTT 59.349 50.000 0.00 0.00 0.00 2.66
3403 3554 0.371989 TTCACGCACGACACAGTTTG 59.628 50.000 0.00 0.00 0.00 2.93
3404 3555 1.651132 CACGCACGACACAGTTTGC 60.651 57.895 0.00 0.00 0.00 3.68
3405 3556 2.103647 ACGCACGACACAGTTTGCA 61.104 52.632 0.00 0.00 34.49 4.08
3406 3557 1.279539 CGCACGACACAGTTTGCAT 59.720 52.632 0.00 0.00 34.49 3.96
3407 3558 0.993251 CGCACGACACAGTTTGCATG 60.993 55.000 0.00 0.00 34.49 4.06
3408 3559 0.307453 GCACGACACAGTTTGCATGA 59.693 50.000 0.00 0.00 34.97 3.07
3409 3560 1.069022 GCACGACACAGTTTGCATGAT 60.069 47.619 0.00 0.00 34.97 2.45
3410 3561 2.843077 CACGACACAGTTTGCATGATC 58.157 47.619 0.00 0.00 0.00 2.92
3411 3562 2.481568 CACGACACAGTTTGCATGATCT 59.518 45.455 0.00 0.00 0.00 2.75
3412 3563 3.058708 CACGACACAGTTTGCATGATCTT 60.059 43.478 0.00 0.00 0.00 2.40
3413 3564 3.565482 ACGACACAGTTTGCATGATCTTT 59.435 39.130 0.00 0.00 0.00 2.52
3414 3565 3.910170 CGACACAGTTTGCATGATCTTTG 59.090 43.478 0.00 0.00 0.00 2.77
3415 3566 4.319694 CGACACAGTTTGCATGATCTTTGA 60.320 41.667 0.00 0.00 0.00 2.69
3416 3567 5.518848 ACACAGTTTGCATGATCTTTGAA 57.481 34.783 0.00 0.00 0.00 2.69
3417 3568 5.284079 ACACAGTTTGCATGATCTTTGAAC 58.716 37.500 0.00 0.00 0.00 3.18
3418 3569 4.380678 CACAGTTTGCATGATCTTTGAACG 59.619 41.667 0.00 0.00 0.00 3.95
3419 3570 4.275689 ACAGTTTGCATGATCTTTGAACGA 59.724 37.500 0.00 0.00 0.00 3.85
3420 3571 5.214417 CAGTTTGCATGATCTTTGAACGAA 58.786 37.500 0.00 0.00 0.00 3.85
3421 3572 5.116074 CAGTTTGCATGATCTTTGAACGAAC 59.884 40.000 0.00 0.00 0.00 3.95
3422 3573 3.454042 TGCATGATCTTTGAACGAACG 57.546 42.857 0.00 0.00 0.00 3.95
3423 3574 3.063485 TGCATGATCTTTGAACGAACGA 58.937 40.909 0.00 0.00 0.00 3.85
3424 3575 3.684305 TGCATGATCTTTGAACGAACGAT 59.316 39.130 0.00 0.00 0.00 3.73
3425 3576 4.867608 TGCATGATCTTTGAACGAACGATA 59.132 37.500 0.00 0.00 0.00 2.92
3426 3577 5.191059 GCATGATCTTTGAACGAACGATAC 58.809 41.667 0.00 0.00 0.00 2.24
3427 3578 5.220397 GCATGATCTTTGAACGAACGATACA 60.220 40.000 0.00 0.00 0.00 2.29
3428 3579 6.406018 CATGATCTTTGAACGAACGATACAG 58.594 40.000 0.14 0.00 0.00 2.74
3429 3580 5.705902 TGATCTTTGAACGAACGATACAGA 58.294 37.500 0.14 0.00 0.00 3.41
3430 3581 5.800438 TGATCTTTGAACGAACGATACAGAG 59.200 40.000 0.14 3.52 0.00 3.35
3431 3582 5.117355 TCTTTGAACGAACGATACAGAGT 57.883 39.130 0.14 0.00 0.00 3.24
3432 3583 5.152097 TCTTTGAACGAACGATACAGAGTC 58.848 41.667 0.14 0.00 0.00 3.36
3433 3584 3.482722 TGAACGAACGATACAGAGTCC 57.517 47.619 0.14 0.00 0.00 3.85
3434 3585 2.815503 TGAACGAACGATACAGAGTCCA 59.184 45.455 0.14 0.00 0.00 4.02
3435 3586 2.915738 ACGAACGATACAGAGTCCAC 57.084 50.000 0.14 0.00 0.00 4.02
3436 3587 1.129998 ACGAACGATACAGAGTCCACG 59.870 52.381 0.14 0.00 0.00 4.94
3437 3588 1.546834 GAACGATACAGAGTCCACGC 58.453 55.000 0.00 0.00 0.00 5.34
3438 3589 0.885879 AACGATACAGAGTCCACGCA 59.114 50.000 0.00 0.00 0.00 5.24
3439 3590 1.103803 ACGATACAGAGTCCACGCAT 58.896 50.000 0.00 0.00 0.00 4.73
3440 3591 1.065701 ACGATACAGAGTCCACGCATC 59.934 52.381 0.00 0.00 0.00 3.91
3441 3592 1.065551 CGATACAGAGTCCACGCATCA 59.934 52.381 0.00 0.00 0.00 3.07
3442 3593 2.736978 GATACAGAGTCCACGCATCAG 58.263 52.381 0.00 0.00 0.00 2.90
3443 3594 0.173481 TACAGAGTCCACGCATCAGC 59.827 55.000 0.00 0.00 37.42 4.26
3444 3595 1.812922 CAGAGTCCACGCATCAGCC 60.813 63.158 0.00 0.00 37.52 4.85
3445 3596 2.265739 GAGTCCACGCATCAGCCA 59.734 61.111 0.00 0.00 37.52 4.75
3446 3597 1.375908 GAGTCCACGCATCAGCCAA 60.376 57.895 0.00 0.00 37.52 4.52
3447 3598 1.364626 GAGTCCACGCATCAGCCAAG 61.365 60.000 0.00 0.00 37.52 3.61
3448 3599 1.375908 GTCCACGCATCAGCCAAGA 60.376 57.895 0.00 0.00 37.52 3.02
3449 3600 1.078918 TCCACGCATCAGCCAAGAG 60.079 57.895 0.00 0.00 37.52 2.85
3450 3601 2.758089 CCACGCATCAGCCAAGAGC 61.758 63.158 0.00 0.00 44.25 4.09
3467 3618 3.460857 GAGCATCTACATCCGGACTTT 57.539 47.619 6.12 0.00 0.00 2.66
3468 3619 3.126831 GAGCATCTACATCCGGACTTTG 58.873 50.000 6.12 3.56 0.00 2.77
3469 3620 1.599542 GCATCTACATCCGGACTTTGC 59.400 52.381 6.12 7.10 0.00 3.68
3470 3621 2.905075 CATCTACATCCGGACTTTGCA 58.095 47.619 6.12 0.00 0.00 4.08
3471 3622 3.270027 CATCTACATCCGGACTTTGCAA 58.730 45.455 6.12 0.00 0.00 4.08
3472 3623 3.627395 TCTACATCCGGACTTTGCAAT 57.373 42.857 6.12 0.00 0.00 3.56
3473 3624 3.531538 TCTACATCCGGACTTTGCAATC 58.468 45.455 6.12 0.00 0.00 2.67
3474 3625 1.463674 ACATCCGGACTTTGCAATCC 58.536 50.000 6.12 8.77 0.00 3.01
3478 3629 2.885113 GGACTTTGCAATCCGGCC 59.115 61.111 0.00 0.00 0.00 6.13
3479 3630 2.710902 GGACTTTGCAATCCGGCCC 61.711 63.158 0.00 0.00 0.00 5.80
3480 3631 2.679996 ACTTTGCAATCCGGCCCC 60.680 61.111 0.00 0.00 0.00 5.80
3481 3632 2.362889 CTTTGCAATCCGGCCCCT 60.363 61.111 0.00 0.00 0.00 4.79
3482 3633 1.077068 CTTTGCAATCCGGCCCCTA 60.077 57.895 0.00 0.00 0.00 3.53
3483 3634 0.468029 CTTTGCAATCCGGCCCCTAT 60.468 55.000 0.00 0.00 0.00 2.57
3484 3635 0.847373 TTTGCAATCCGGCCCCTATA 59.153 50.000 0.00 0.00 0.00 1.31
3485 3636 0.109723 TTGCAATCCGGCCCCTATAC 59.890 55.000 0.00 0.00 0.00 1.47
3486 3637 1.057275 TGCAATCCGGCCCCTATACA 61.057 55.000 0.00 0.00 0.00 2.29
3487 3638 0.605589 GCAATCCGGCCCCTATACAC 60.606 60.000 0.00 0.00 0.00 2.90
3488 3639 0.036306 CAATCCGGCCCCTATACACC 59.964 60.000 0.00 0.00 0.00 4.16
3489 3640 1.131928 AATCCGGCCCCTATACACCC 61.132 60.000 0.00 0.00 0.00 4.61
3490 3641 3.622826 CCGGCCCCTATACACCCG 61.623 72.222 0.00 0.00 38.71 5.28
3491 3642 4.309950 CGGCCCCTATACACCCGC 62.310 72.222 0.00 0.00 31.87 6.13
3492 3643 3.949980 GGCCCCTATACACCCGCC 61.950 72.222 0.00 0.00 0.00 6.13
3493 3644 4.309950 GCCCCTATACACCCGCCG 62.310 72.222 0.00 0.00 0.00 6.46
3494 3645 2.522436 CCCCTATACACCCGCCGA 60.522 66.667 0.00 0.00 0.00 5.54
3495 3646 2.732658 CCCTATACACCCGCCGAC 59.267 66.667 0.00 0.00 0.00 4.79
3496 3647 2.732658 CCTATACACCCGCCGACC 59.267 66.667 0.00 0.00 0.00 4.79
3497 3648 2.732658 CTATACACCCGCCGACCC 59.267 66.667 0.00 0.00 0.00 4.46
3498 3649 2.839162 TATACACCCGCCGACCCC 60.839 66.667 0.00 0.00 0.00 4.95
3499 3650 3.378472 TATACACCCGCCGACCCCT 62.378 63.158 0.00 0.00 0.00 4.79
3505 3656 3.151710 CCGCCGACCCCTCATGTA 61.152 66.667 0.00 0.00 0.00 2.29
3506 3657 2.507854 CCGCCGACCCCTCATGTAT 61.508 63.158 0.00 0.00 0.00 2.29
3507 3658 1.445942 CGCCGACCCCTCATGTATT 59.554 57.895 0.00 0.00 0.00 1.89
3508 3659 0.677288 CGCCGACCCCTCATGTATTA 59.323 55.000 0.00 0.00 0.00 0.98
3509 3660 1.604693 CGCCGACCCCTCATGTATTAC 60.605 57.143 0.00 0.00 0.00 1.89
3510 3661 1.604693 GCCGACCCCTCATGTATTACG 60.605 57.143 0.00 0.00 0.00 3.18
3511 3662 1.684983 CCGACCCCTCATGTATTACGT 59.315 52.381 0.00 0.00 0.00 3.57
3512 3663 2.288030 CCGACCCCTCATGTATTACGTC 60.288 54.545 0.00 0.00 0.00 4.34
3513 3664 2.603892 CGACCCCTCATGTATTACGTCG 60.604 54.545 0.00 0.00 36.34 5.12
3514 3665 1.068127 ACCCCTCATGTATTACGTCGC 59.932 52.381 0.00 0.00 0.00 5.19
3515 3666 1.067974 CCCCTCATGTATTACGTCGCA 59.932 52.381 0.00 0.00 0.00 5.10
3516 3667 2.124903 CCCTCATGTATTACGTCGCAC 58.875 52.381 0.00 0.00 0.00 5.34
3517 3668 2.480587 CCCTCATGTATTACGTCGCACA 60.481 50.000 0.00 0.00 0.00 4.57
3518 3669 3.381045 CCTCATGTATTACGTCGCACAT 58.619 45.455 0.00 0.00 31.91 3.21
3519 3670 3.802139 CCTCATGTATTACGTCGCACATT 59.198 43.478 0.00 0.00 29.31 2.71
3520 3671 4.085055 CCTCATGTATTACGTCGCACATTC 60.085 45.833 0.00 0.00 29.31 2.67
3521 3672 3.484285 TCATGTATTACGTCGCACATTCG 59.516 43.478 0.00 0.00 29.31 3.34
3522 3673 1.584761 TGTATTACGTCGCACATTCGC 59.415 47.619 0.00 0.00 0.00 4.70
3523 3674 1.584761 GTATTACGTCGCACATTCGCA 59.415 47.619 0.00 0.00 0.00 5.10
3524 3675 1.286501 ATTACGTCGCACATTCGCAT 58.713 45.000 0.00 0.00 0.00 4.73
3525 3676 1.910688 TTACGTCGCACATTCGCATA 58.089 45.000 0.00 0.00 0.00 3.14
3526 3677 1.193644 TACGTCGCACATTCGCATAC 58.806 50.000 0.00 0.00 0.00 2.39
3527 3678 1.084915 CGTCGCACATTCGCATACG 60.085 57.895 0.00 0.00 42.01 3.06
3528 3679 1.739093 CGTCGCACATTCGCATACGT 61.739 55.000 0.00 0.00 41.18 3.57
3529 3680 1.193644 GTCGCACATTCGCATACGTA 58.806 50.000 0.00 0.00 41.18 3.57
3530 3681 1.584761 GTCGCACATTCGCATACGTAA 59.415 47.619 0.00 0.00 41.18 3.18
3531 3682 2.028284 GTCGCACATTCGCATACGTAAA 59.972 45.455 0.00 0.00 41.18 2.01
3532 3683 2.666994 TCGCACATTCGCATACGTAAAA 59.333 40.909 0.00 0.00 41.18 1.52
3533 3684 3.307512 TCGCACATTCGCATACGTAAAAT 59.692 39.130 0.00 0.00 41.18 1.82
3534 3685 4.025750 CGCACATTCGCATACGTAAAATT 58.974 39.130 0.00 0.00 41.18 1.82
3535 3686 4.494056 CGCACATTCGCATACGTAAAATTT 59.506 37.500 0.00 0.00 41.18 1.82
3536 3687 5.329768 CGCACATTCGCATACGTAAAATTTC 60.330 40.000 0.00 0.00 41.18 2.17
3537 3688 5.329768 GCACATTCGCATACGTAAAATTTCG 60.330 40.000 0.00 0.00 41.18 3.46
3538 3689 5.954922 CACATTCGCATACGTAAAATTTCGA 59.045 36.000 0.00 0.03 41.18 3.71
3539 3690 6.627276 CACATTCGCATACGTAAAATTTCGAT 59.373 34.615 0.00 0.00 41.18 3.59
3540 3691 7.163520 CACATTCGCATACGTAAAATTTCGATT 59.836 33.333 0.00 0.00 41.18 3.34
3541 3692 8.329583 ACATTCGCATACGTAAAATTTCGATTA 58.670 29.630 0.00 0.00 41.18 1.75
3542 3693 9.313323 CATTCGCATACGTAAAATTTCGATTAT 57.687 29.630 0.00 0.00 41.18 1.28
3543 3694 8.907579 TTCGCATACGTAAAATTTCGATTATC 57.092 30.769 0.00 0.00 41.18 1.75
3544 3695 7.215167 TCGCATACGTAAAATTTCGATTATCG 58.785 34.615 8.47 8.47 40.06 2.92
3545 3696 7.113264 TCGCATACGTAAAATTTCGATTATCGA 59.887 33.333 13.66 13.66 43.35 3.59
3546 3697 7.732583 CGCATACGTAAAATTTCGATTATCGAA 59.267 33.333 23.72 23.72 44.82 3.71
3558 3709 6.951256 TCGATTATCGAATCCATGAACATC 57.049 37.500 15.31 0.00 46.90 3.06
3559 3710 5.572896 TCGATTATCGAATCCATGAACATCG 59.427 40.000 15.31 0.00 46.90 3.84
3560 3711 5.572896 CGATTATCGAATCCATGAACATCGA 59.427 40.000 9.20 12.75 43.74 3.59
3561 3712 7.841500 TCGATTATCGAATCCATGAACATCGAT 60.842 37.037 15.31 20.89 46.90 3.59
3562 3713 6.951256 TTATCGAATCCATGAACATCGATC 57.049 37.500 20.79 0.00 46.80 3.69
3563 3714 4.320608 TCGAATCCATGAACATCGATCA 57.679 40.909 0.00 0.00 37.59 2.92
3564 3715 4.886579 TCGAATCCATGAACATCGATCAT 58.113 39.130 0.00 0.00 37.59 2.45
3565 3716 6.024552 TCGAATCCATGAACATCGATCATA 57.975 37.500 0.00 0.00 37.59 2.15
3566 3717 6.633856 TCGAATCCATGAACATCGATCATAT 58.366 36.000 0.00 0.00 37.59 1.78
3567 3718 6.532657 TCGAATCCATGAACATCGATCATATG 59.467 38.462 0.00 0.00 37.59 1.78
3568 3719 6.532657 CGAATCCATGAACATCGATCATATGA 59.467 38.462 8.10 8.10 35.80 2.15
3569 3720 7.224167 CGAATCCATGAACATCGATCATATGAT 59.776 37.037 18.21 18.21 35.80 2.45
3570 3721 9.538508 GAATCCATGAACATCGATCATATGATA 57.461 33.333 18.19 4.40 35.80 2.15
3571 3722 8.883954 ATCCATGAACATCGATCATATGATAC 57.116 34.615 18.19 10.76 35.80 2.24
3572 3723 7.839907 TCCATGAACATCGATCATATGATACA 58.160 34.615 18.19 8.21 35.80 2.29
3573 3724 8.313292 TCCATGAACATCGATCATATGATACAA 58.687 33.333 18.19 7.31 35.80 2.41
3574 3725 8.938906 CCATGAACATCGATCATATGATACAAA 58.061 33.333 18.19 4.95 35.80 2.83
3581 3732 9.469239 CATCGATCATATGATACAAATTGTTCG 57.531 33.333 18.19 13.64 34.37 3.95
3582 3733 8.810652 TCGATCATATGATACAAATTGTTCGA 57.189 30.769 18.19 15.56 34.70 3.71
3583 3734 9.255304 TCGATCATATGATACAAATTGTTCGAA 57.745 29.630 18.19 0.00 34.37 3.71
3591 3742 9.689976 ATGATACAAATTGTTCGAATTCAACAA 57.310 25.926 24.94 24.94 45.43 2.83
3605 3756 6.900568 AATTCAACAATTCGAAACAAAGCA 57.099 29.167 0.00 0.00 0.00 3.91
3606 3757 6.900568 ATTCAACAATTCGAAACAAAGCAA 57.099 29.167 0.00 0.00 0.00 3.91
3607 3758 6.712241 TTCAACAATTCGAAACAAAGCAAA 57.288 29.167 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.958234 ATTCTTTTTACTTTTGAGAAGAGCTTC 57.042 29.630 2.03 2.03 39.78 3.86
58 59 9.778741 TGTCTTTGACTGTTCATAACTTCTTAT 57.221 29.630 0.00 0.00 33.15 1.73
59 60 9.042008 GTGTCTTTGACTGTTCATAACTTCTTA 57.958 33.333 0.00 0.00 33.15 2.10
60 61 7.012421 GGTGTCTTTGACTGTTCATAACTTCTT 59.988 37.037 0.00 0.00 33.15 2.52
61 62 6.483640 GGTGTCTTTGACTGTTCATAACTTCT 59.516 38.462 0.00 0.00 33.15 2.85
62 63 6.483640 AGGTGTCTTTGACTGTTCATAACTTC 59.516 38.462 0.00 0.00 33.15 3.01
63 64 6.357367 AGGTGTCTTTGACTGTTCATAACTT 58.643 36.000 0.00 0.00 33.15 2.66
64 65 5.930135 AGGTGTCTTTGACTGTTCATAACT 58.070 37.500 0.00 0.00 33.15 2.24
65 66 5.107453 CGAGGTGTCTTTGACTGTTCATAAC 60.107 44.000 0.00 0.00 33.15 1.89
66 67 4.988540 CGAGGTGTCTTTGACTGTTCATAA 59.011 41.667 0.00 0.00 33.15 1.90
67 68 4.556233 CGAGGTGTCTTTGACTGTTCATA 58.444 43.478 0.00 0.00 33.15 2.15
68 69 3.393800 CGAGGTGTCTTTGACTGTTCAT 58.606 45.455 0.00 0.00 33.15 2.57
69 70 2.483013 CCGAGGTGTCTTTGACTGTTCA 60.483 50.000 0.00 0.00 33.15 3.18
70 71 2.135933 CCGAGGTGTCTTTGACTGTTC 58.864 52.381 0.00 0.00 33.15 3.18
71 72 1.202651 CCCGAGGTGTCTTTGACTGTT 60.203 52.381 0.00 0.00 33.15 3.16
72 73 0.393077 CCCGAGGTGTCTTTGACTGT 59.607 55.000 0.00 0.00 33.15 3.55
73 74 0.393077 ACCCGAGGTGTCTTTGACTG 59.607 55.000 0.00 0.00 32.98 3.51
74 75 2.836020 ACCCGAGGTGTCTTTGACT 58.164 52.632 0.00 0.00 32.98 3.41
84 85 2.288025 ATGCCGTAACACCCGAGGT 61.288 57.895 0.00 0.00 35.62 3.85
85 86 1.813753 CATGCCGTAACACCCGAGG 60.814 63.158 0.00 0.00 0.00 4.63
86 87 1.813753 CCATGCCGTAACACCCGAG 60.814 63.158 0.00 0.00 0.00 4.63
87 88 1.828461 TTCCATGCCGTAACACCCGA 61.828 55.000 0.00 0.00 0.00 5.14
88 89 1.376166 TTCCATGCCGTAACACCCG 60.376 57.895 0.00 0.00 0.00 5.28
89 90 1.310216 GGTTCCATGCCGTAACACCC 61.310 60.000 0.00 0.00 0.00 4.61
90 91 1.310216 GGGTTCCATGCCGTAACACC 61.310 60.000 0.00 0.00 0.00 4.16
91 92 0.322187 AGGGTTCCATGCCGTAACAC 60.322 55.000 0.00 0.00 0.00 3.32
92 93 1.065998 GTAGGGTTCCATGCCGTAACA 60.066 52.381 0.00 0.00 0.00 2.41
93 94 1.208776 AGTAGGGTTCCATGCCGTAAC 59.791 52.381 0.00 0.00 0.00 2.50
94 95 1.483415 GAGTAGGGTTCCATGCCGTAA 59.517 52.381 0.00 0.00 0.00 3.18
95 96 1.117150 GAGTAGGGTTCCATGCCGTA 58.883 55.000 0.00 0.00 0.00 4.02
96 97 1.905512 GAGTAGGGTTCCATGCCGT 59.094 57.895 0.00 0.00 0.00 5.68
97 98 1.227263 CGAGTAGGGTTCCATGCCG 60.227 63.158 0.00 0.00 0.00 5.69
98 99 0.252197 AACGAGTAGGGTTCCATGCC 59.748 55.000 0.00 0.00 0.00 4.40
99 100 1.653151 GAACGAGTAGGGTTCCATGC 58.347 55.000 0.00 0.00 38.23 4.06
104 105 1.204231 GGTGAGGAACGAGTAGGGTTC 59.796 57.143 0.00 0.00 42.32 3.62
105 106 1.264295 GGTGAGGAACGAGTAGGGTT 58.736 55.000 0.00 0.00 0.00 4.11
106 107 0.113776 TGGTGAGGAACGAGTAGGGT 59.886 55.000 0.00 0.00 0.00 4.34
107 108 1.263356 TTGGTGAGGAACGAGTAGGG 58.737 55.000 0.00 0.00 0.00 3.53
108 109 3.396260 TTTTGGTGAGGAACGAGTAGG 57.604 47.619 0.00 0.00 0.00 3.18
109 110 4.377897 AGTTTTTGGTGAGGAACGAGTAG 58.622 43.478 0.00 0.00 0.00 2.57
110 111 4.374399 GAGTTTTTGGTGAGGAACGAGTA 58.626 43.478 0.00 0.00 0.00 2.59
111 112 3.203716 GAGTTTTTGGTGAGGAACGAGT 58.796 45.455 0.00 0.00 0.00 4.18
112 113 2.548480 GGAGTTTTTGGTGAGGAACGAG 59.452 50.000 0.00 0.00 0.00 4.18
113 114 2.567985 GGAGTTTTTGGTGAGGAACGA 58.432 47.619 0.00 0.00 0.00 3.85
114 115 1.607148 GGGAGTTTTTGGTGAGGAACG 59.393 52.381 0.00 0.00 0.00 3.95
115 116 1.607148 CGGGAGTTTTTGGTGAGGAAC 59.393 52.381 0.00 0.00 0.00 3.62
116 117 1.975660 CGGGAGTTTTTGGTGAGGAA 58.024 50.000 0.00 0.00 0.00 3.36
117 118 0.536460 GCGGGAGTTTTTGGTGAGGA 60.536 55.000 0.00 0.00 0.00 3.71
118 119 1.524008 GGCGGGAGTTTTTGGTGAGG 61.524 60.000 0.00 0.00 0.00 3.86
119 120 1.524008 GGGCGGGAGTTTTTGGTGAG 61.524 60.000 0.00 0.00 0.00 3.51
120 121 1.529713 GGGCGGGAGTTTTTGGTGA 60.530 57.895 0.00 0.00 0.00 4.02
121 122 1.524008 GAGGGCGGGAGTTTTTGGTG 61.524 60.000 0.00 0.00 0.00 4.17
122 123 1.228459 GAGGGCGGGAGTTTTTGGT 60.228 57.895 0.00 0.00 0.00 3.67
123 124 2.332654 CGAGGGCGGGAGTTTTTGG 61.333 63.158 0.00 0.00 0.00 3.28
124 125 1.302192 TCGAGGGCGGGAGTTTTTG 60.302 57.895 0.00 0.00 38.28 2.44
142 143 0.617413 CTCCCTGCTCCAATGAGTGT 59.383 55.000 0.00 0.00 40.95 3.55
148 149 1.344803 TGATCTCCTCCCTGCTCCAAT 60.345 52.381 0.00 0.00 0.00 3.16
150 151 0.398239 CTGATCTCCTCCCTGCTCCA 60.398 60.000 0.00 0.00 0.00 3.86
168 169 4.796231 GTCGGCGTGCGGTGATCT 62.796 66.667 6.85 0.00 0.00 2.75
197 198 2.649531 TTGATTGAGGAAACCACGGT 57.350 45.000 0.00 0.00 0.00 4.83
224 225 9.970553 TCAAACCTACCGTGTATATATCTCTAT 57.029 33.333 0.00 0.00 0.00 1.98
256 257 9.562408 ACGGGATTTAAATGGTTTTGTTAATTT 57.438 25.926 5.17 0.00 0.00 1.82
284 285 2.406130 CGACAAAGCTTTGGTACGGTA 58.594 47.619 35.65 0.00 42.34 4.02
285 286 1.223187 CGACAAAGCTTTGGTACGGT 58.777 50.000 35.65 18.71 42.34 4.83
319 320 2.742372 ACTGTTGACCGCGGATGC 60.742 61.111 35.90 20.69 37.91 3.91
395 396 2.032528 TCTTGGTCCAGCGGCTTG 59.967 61.111 0.00 0.00 0.00 4.01
457 458 1.804326 CCATGTCGACGTCCGGTTC 60.804 63.158 7.47 0.00 39.14 3.62
458 459 2.260434 CCATGTCGACGTCCGGTT 59.740 61.111 7.47 0.00 39.14 4.44
460 461 2.506217 CACCATGTCGACGTCCGG 60.506 66.667 7.47 9.92 39.14 5.14
462 463 1.352156 GAAGCACCATGTCGACGTCC 61.352 60.000 7.47 0.00 0.00 4.79
571 586 4.402192 CGAGATGCGGTGTCGATT 57.598 55.556 2.84 0.00 45.67 3.34
592 607 2.599578 CCAACTTGCCAGCAGCCT 60.600 61.111 0.00 0.00 42.71 4.58
603 618 2.911509 TGCATGCGTGGCCAACTT 60.912 55.556 7.24 0.00 0.00 2.66
606 621 2.361483 ATCTGCATGCGTGGCCAA 60.361 55.556 7.24 0.00 0.00 4.52
633 648 2.748532 GCGCGGGATAGTCTATTCTACT 59.251 50.000 8.83 0.00 0.00 2.57
691 706 1.654317 ACGTACAGAGACTCGGCTAG 58.346 55.000 2.18 0.00 0.00 3.42
692 707 2.482664 CCTACGTACAGAGACTCGGCTA 60.483 54.545 2.18 0.00 0.00 3.93
693 708 1.654317 CTACGTACAGAGACTCGGCT 58.346 55.000 2.18 0.00 0.00 5.52
694 709 0.656785 CCTACGTACAGAGACTCGGC 59.343 60.000 2.18 0.00 0.00 5.54
697 712 1.671845 CTGGCCTACGTACAGAGACTC 59.328 57.143 3.32 0.00 34.21 3.36
698 713 1.752683 CTGGCCTACGTACAGAGACT 58.247 55.000 3.32 0.00 34.21 3.24
699 714 0.100861 GCTGGCCTACGTACAGAGAC 59.899 60.000 14.06 0.00 34.21 3.36
804 827 0.250252 TGATGAAGCGCAGTGGTTGA 60.250 50.000 11.47 0.00 38.70 3.18
919 960 1.063764 CGACTCCGAGCTACTGGTAAC 59.936 57.143 0.00 0.00 38.22 2.50
936 980 1.424493 CTCGATTGCAAGCCTCCGAC 61.424 60.000 9.48 0.00 0.00 4.79
949 993 1.342819 GGCAGGATCAGCTACTCGATT 59.657 52.381 8.95 0.00 0.00 3.34
959 1005 4.630644 AGGTTATGTATGGCAGGATCAG 57.369 45.455 0.00 0.00 0.00 2.90
969 1015 9.537192 TTCTCCGTTAACAATAGGTTATGTATG 57.463 33.333 6.39 0.00 41.43 2.39
971 1017 7.707893 GCTTCTCCGTTAACAATAGGTTATGTA 59.292 37.037 6.39 0.00 41.43 2.29
973 1019 6.018180 GGCTTCTCCGTTAACAATAGGTTATG 60.018 42.308 6.39 0.00 41.43 1.90
994 1044 1.802636 CGGCAATTGACATCGGCTT 59.197 52.632 12.81 0.00 0.00 4.35
1017 1067 4.612412 GTGGCGGTTCCGGTGACA 62.612 66.667 13.16 0.00 37.80 3.58
1503 1553 4.361971 AGCGGGTCGAGGAGTCCA 62.362 66.667 12.86 0.00 0.00 4.02
2232 2282 3.993376 GACCATGTCGCCCGCGTTA 62.993 63.158 4.92 0.00 40.74 3.18
2677 2728 7.888250 GGAAATGAGATATTTTCCTGGAACT 57.112 36.000 9.04 2.16 44.86 3.01
2704 2755 3.978217 TGCATCGAAACGAAAATGAAACC 59.022 39.130 0.00 0.00 39.99 3.27
2710 2767 5.289917 TGTACATGCATCGAAACGAAAAT 57.710 34.783 0.00 0.00 39.99 1.82
2745 2802 3.804518 TCAATTATGTCACGCACACAC 57.195 42.857 0.00 0.00 38.04 3.82
2771 2828 3.761218 TGGTCAAAACACTCAAGCTTTCA 59.239 39.130 0.00 0.00 0.00 2.69
2867 2933 2.029918 GTCCCTGTTTTGGAGAATGCAC 60.030 50.000 0.00 0.00 34.66 4.57
2925 3069 4.032104 GTCGACGTTAATGTTACATGGGTC 59.968 45.833 0.00 3.83 0.00 4.46
3038 3185 7.513371 AATGAATTGTTAACCGTAAGAACCA 57.487 32.000 2.48 0.00 43.02 3.67
3163 3312 4.114597 ACTACCCTAGACTGGTGGTACTA 58.885 47.826 4.22 0.00 44.68 1.82
3164 3313 2.924977 ACTACCCTAGACTGGTGGTACT 59.075 50.000 4.22 0.00 44.68 2.73
3165 3314 3.378861 ACTACCCTAGACTGGTGGTAC 57.621 52.381 4.22 0.00 44.68 3.34
3215 3366 7.121168 TGGTTGATTTCTGTACCATTGAAGATC 59.879 37.037 0.00 0.00 35.82 2.75
3223 3374 4.657814 AGGTGGTTGATTTCTGTACCAT 57.342 40.909 0.00 0.00 42.21 3.55
3298 3449 1.070376 CATGCTCCGATGCACGTATTG 60.070 52.381 4.54 0.00 46.33 1.90
3321 3472 6.289064 ACTAGTTTATAACCATAGCAGCCAC 58.711 40.000 0.00 0.00 0.00 5.01
3322 3473 6.494666 ACTAGTTTATAACCATAGCAGCCA 57.505 37.500 0.00 0.00 0.00 4.75
3323 3474 7.893658 TCTACTAGTTTATAACCATAGCAGCC 58.106 38.462 0.00 0.00 0.00 4.85
3324 3475 9.760077 TTTCTACTAGTTTATAACCATAGCAGC 57.240 33.333 0.00 0.00 0.00 5.25
3336 3487 8.997621 TCGTCAGCAATTTTCTACTAGTTTAT 57.002 30.769 0.00 0.00 0.00 1.40
3337 3488 8.821147 TTCGTCAGCAATTTTCTACTAGTTTA 57.179 30.769 0.00 0.00 0.00 2.01
3338 3489 7.441458 ACTTCGTCAGCAATTTTCTACTAGTTT 59.559 33.333 0.00 0.00 0.00 2.66
3339 3490 6.929606 ACTTCGTCAGCAATTTTCTACTAGTT 59.070 34.615 0.00 0.00 0.00 2.24
3340 3491 6.366332 CACTTCGTCAGCAATTTTCTACTAGT 59.634 38.462 0.00 0.00 0.00 2.57
3341 3492 6.586463 TCACTTCGTCAGCAATTTTCTACTAG 59.414 38.462 0.00 0.00 0.00 2.57
3342 3493 6.452242 TCACTTCGTCAGCAATTTTCTACTA 58.548 36.000 0.00 0.00 0.00 1.82
3343 3494 5.297547 TCACTTCGTCAGCAATTTTCTACT 58.702 37.500 0.00 0.00 0.00 2.57
3344 3495 5.591643 TCACTTCGTCAGCAATTTTCTAC 57.408 39.130 0.00 0.00 0.00 2.59
3345 3496 6.801539 AATCACTTCGTCAGCAATTTTCTA 57.198 33.333 0.00 0.00 0.00 2.10
3346 3497 5.695851 AATCACTTCGTCAGCAATTTTCT 57.304 34.783 0.00 0.00 0.00 2.52
3347 3498 6.409185 CGATAATCACTTCGTCAGCAATTTTC 59.591 38.462 0.00 0.00 0.00 2.29
3348 3499 6.128282 ACGATAATCACTTCGTCAGCAATTTT 60.128 34.615 0.00 0.00 44.72 1.82
3349 3500 5.351465 ACGATAATCACTTCGTCAGCAATTT 59.649 36.000 0.00 0.00 44.72 1.82
3350 3501 4.870426 ACGATAATCACTTCGTCAGCAATT 59.130 37.500 0.00 0.00 44.72 2.32
3351 3502 4.433615 ACGATAATCACTTCGTCAGCAAT 58.566 39.130 0.00 0.00 44.72 3.56
3352 3503 3.845178 ACGATAATCACTTCGTCAGCAA 58.155 40.909 0.00 0.00 44.72 3.91
3353 3504 3.503827 ACGATAATCACTTCGTCAGCA 57.496 42.857 0.00 0.00 44.72 4.41
3354 3505 5.271625 TCTTACGATAATCACTTCGTCAGC 58.728 41.667 0.78 0.00 44.72 4.26
3355 3506 6.967767 ACTTCTTACGATAATCACTTCGTCAG 59.032 38.462 0.78 1.13 44.72 3.51
3356 3507 6.849502 ACTTCTTACGATAATCACTTCGTCA 58.150 36.000 0.78 0.00 44.72 4.35
3357 3508 7.601775 CAACTTCTTACGATAATCACTTCGTC 58.398 38.462 0.78 0.00 44.72 4.20
3359 3510 6.253727 AGCAACTTCTTACGATAATCACTTCG 59.746 38.462 0.00 0.00 41.04 3.79
3360 3511 7.527084 AGCAACTTCTTACGATAATCACTTC 57.473 36.000 0.00 0.00 0.00 3.01
3361 3512 7.602644 TGAAGCAACTTCTTACGATAATCACTT 59.397 33.333 8.66 0.00 40.73 3.16
3362 3513 7.063544 GTGAAGCAACTTCTTACGATAATCACT 59.936 37.037 8.66 0.00 40.73 3.41
3363 3514 7.174082 GTGAAGCAACTTCTTACGATAATCAC 58.826 38.462 8.66 0.00 40.73 3.06
3364 3515 6.034577 CGTGAAGCAACTTCTTACGATAATCA 59.965 38.462 12.30 0.00 40.12 2.57
3365 3516 6.403615 CGTGAAGCAACTTCTTACGATAATC 58.596 40.000 12.30 0.00 40.12 1.75
3366 3517 6.332504 CGTGAAGCAACTTCTTACGATAAT 57.667 37.500 12.30 0.00 40.12 1.28
3367 3518 5.756950 CGTGAAGCAACTTCTTACGATAA 57.243 39.130 12.30 0.00 40.12 1.75
3383 3534 0.650512 AAACTGTGTCGTGCGTGAAG 59.349 50.000 0.00 0.00 0.00 3.02
3384 3535 0.371989 CAAACTGTGTCGTGCGTGAA 59.628 50.000 0.00 0.00 0.00 3.18
3385 3536 2.002899 CAAACTGTGTCGTGCGTGA 58.997 52.632 0.00 0.00 0.00 4.35
3386 3537 1.651132 GCAAACTGTGTCGTGCGTG 60.651 57.895 0.00 0.00 0.00 5.34
3387 3538 1.436195 ATGCAAACTGTGTCGTGCGT 61.436 50.000 0.00 0.00 39.92 5.24
3388 3539 0.993251 CATGCAAACTGTGTCGTGCG 60.993 55.000 0.00 0.00 39.92 5.34
3389 3540 0.307453 TCATGCAAACTGTGTCGTGC 59.693 50.000 0.00 0.00 37.51 5.34
3390 3541 2.481568 AGATCATGCAAACTGTGTCGTG 59.518 45.455 0.00 0.00 0.00 4.35
3391 3542 2.771089 AGATCATGCAAACTGTGTCGT 58.229 42.857 0.00 0.00 0.00 4.34
3392 3543 3.818961 AAGATCATGCAAACTGTGTCG 57.181 42.857 0.00 0.00 0.00 4.35
3393 3544 5.112220 TCAAAGATCATGCAAACTGTGTC 57.888 39.130 0.00 0.00 0.00 3.67
3394 3545 5.284079 GTTCAAAGATCATGCAAACTGTGT 58.716 37.500 0.00 0.00 0.00 3.72
3395 3546 4.380678 CGTTCAAAGATCATGCAAACTGTG 59.619 41.667 0.00 0.00 0.00 3.66
3396 3547 4.275689 TCGTTCAAAGATCATGCAAACTGT 59.724 37.500 0.00 0.00 0.00 3.55
3397 3548 4.786507 TCGTTCAAAGATCATGCAAACTG 58.213 39.130 0.00 0.00 0.00 3.16
3398 3549 5.215160 GTTCGTTCAAAGATCATGCAAACT 58.785 37.500 0.00 0.00 0.00 2.66
3399 3550 4.087085 CGTTCGTTCAAAGATCATGCAAAC 59.913 41.667 0.00 0.00 0.00 2.93
3400 3551 4.024472 TCGTTCGTTCAAAGATCATGCAAA 60.024 37.500 0.00 0.00 0.00 3.68
3401 3552 3.496507 TCGTTCGTTCAAAGATCATGCAA 59.503 39.130 0.00 0.00 0.00 4.08
3402 3553 3.063485 TCGTTCGTTCAAAGATCATGCA 58.937 40.909 0.00 0.00 0.00 3.96
3403 3554 3.722555 TCGTTCGTTCAAAGATCATGC 57.277 42.857 0.00 0.00 0.00 4.06
3404 3555 6.253512 TCTGTATCGTTCGTTCAAAGATCATG 59.746 38.462 0.00 0.00 35.18 3.07
3405 3556 6.330278 TCTGTATCGTTCGTTCAAAGATCAT 58.670 36.000 0.00 0.00 35.18 2.45
3406 3557 5.705902 TCTGTATCGTTCGTTCAAAGATCA 58.294 37.500 0.00 0.00 35.18 2.92
3407 3558 5.800941 ACTCTGTATCGTTCGTTCAAAGATC 59.199 40.000 0.00 0.00 35.18 2.75
3408 3559 5.710984 ACTCTGTATCGTTCGTTCAAAGAT 58.289 37.500 0.00 0.00 37.09 2.40
3409 3560 5.117355 ACTCTGTATCGTTCGTTCAAAGA 57.883 39.130 0.00 0.00 0.00 2.52
3410 3561 4.323868 GGACTCTGTATCGTTCGTTCAAAG 59.676 45.833 0.00 0.00 0.00 2.77
3411 3562 4.232221 GGACTCTGTATCGTTCGTTCAAA 58.768 43.478 0.00 0.00 0.00 2.69
3412 3563 3.253921 TGGACTCTGTATCGTTCGTTCAA 59.746 43.478 0.00 0.00 0.00 2.69
3413 3564 2.815503 TGGACTCTGTATCGTTCGTTCA 59.184 45.455 0.00 0.00 0.00 3.18
3414 3565 3.169733 GTGGACTCTGTATCGTTCGTTC 58.830 50.000 0.00 0.00 0.00 3.95
3415 3566 2.413765 CGTGGACTCTGTATCGTTCGTT 60.414 50.000 0.00 0.00 0.00 3.85
3416 3567 1.129998 CGTGGACTCTGTATCGTTCGT 59.870 52.381 0.00 0.00 0.00 3.85
3417 3568 1.811428 CGTGGACTCTGTATCGTTCG 58.189 55.000 0.00 0.00 0.00 3.95
3418 3569 1.135489 TGCGTGGACTCTGTATCGTTC 60.135 52.381 0.00 0.00 0.00 3.95
3419 3570 0.885879 TGCGTGGACTCTGTATCGTT 59.114 50.000 0.00 0.00 0.00 3.85
3420 3571 1.065701 GATGCGTGGACTCTGTATCGT 59.934 52.381 0.00 0.00 0.00 3.73
3421 3572 1.065551 TGATGCGTGGACTCTGTATCG 59.934 52.381 0.00 0.00 0.00 2.92
3422 3573 2.736978 CTGATGCGTGGACTCTGTATC 58.263 52.381 0.00 0.00 0.00 2.24
3423 3574 1.202463 GCTGATGCGTGGACTCTGTAT 60.202 52.381 0.00 0.00 0.00 2.29
3424 3575 0.173481 GCTGATGCGTGGACTCTGTA 59.827 55.000 0.00 0.00 0.00 2.74
3425 3576 1.079543 GCTGATGCGTGGACTCTGT 60.080 57.895 0.00 0.00 0.00 3.41
3426 3577 1.812922 GGCTGATGCGTGGACTCTG 60.813 63.158 0.00 0.00 40.82 3.35
3427 3578 1.830587 TTGGCTGATGCGTGGACTCT 61.831 55.000 0.00 0.00 40.82 3.24
3428 3579 1.364626 CTTGGCTGATGCGTGGACTC 61.365 60.000 0.00 0.00 40.82 3.36
3429 3580 1.376424 CTTGGCTGATGCGTGGACT 60.376 57.895 0.00 0.00 40.82 3.85
3430 3581 1.364626 CTCTTGGCTGATGCGTGGAC 61.365 60.000 0.00 0.00 40.82 4.02
3431 3582 1.078918 CTCTTGGCTGATGCGTGGA 60.079 57.895 0.00 0.00 40.82 4.02
3432 3583 2.758089 GCTCTTGGCTGATGCGTGG 61.758 63.158 0.00 0.00 40.82 4.94
3433 3584 1.374343 ATGCTCTTGGCTGATGCGTG 61.374 55.000 0.00 0.00 42.39 5.34
3434 3585 1.077930 ATGCTCTTGGCTGATGCGT 60.078 52.632 0.00 0.00 42.39 5.24
3435 3586 0.814410 AGATGCTCTTGGCTGATGCG 60.814 55.000 0.00 0.00 42.39 4.73
3436 3587 1.872313 GTAGATGCTCTTGGCTGATGC 59.128 52.381 0.00 0.00 42.39 3.91
3437 3588 3.189618 TGTAGATGCTCTTGGCTGATG 57.810 47.619 0.00 0.00 42.39 3.07
3438 3589 3.244491 GGATGTAGATGCTCTTGGCTGAT 60.244 47.826 0.00 0.00 42.39 2.90
3439 3590 2.103771 GGATGTAGATGCTCTTGGCTGA 59.896 50.000 0.00 0.00 42.39 4.26
3440 3591 2.492012 GGATGTAGATGCTCTTGGCTG 58.508 52.381 0.00 0.00 42.39 4.85
3441 3592 1.069823 CGGATGTAGATGCTCTTGGCT 59.930 52.381 0.00 0.00 42.39 4.75
3442 3593 1.506493 CGGATGTAGATGCTCTTGGC 58.494 55.000 0.00 0.00 42.22 4.52
3443 3594 1.688735 TCCGGATGTAGATGCTCTTGG 59.311 52.381 0.00 0.00 0.00 3.61
3444 3595 2.363680 AGTCCGGATGTAGATGCTCTTG 59.636 50.000 7.81 0.00 0.00 3.02
3445 3596 2.672098 AGTCCGGATGTAGATGCTCTT 58.328 47.619 7.81 0.00 0.00 2.85
3446 3597 2.373335 AGTCCGGATGTAGATGCTCT 57.627 50.000 7.81 0.00 0.00 4.09
3447 3598 3.126831 CAAAGTCCGGATGTAGATGCTC 58.873 50.000 7.81 0.00 0.00 4.26
3448 3599 2.743183 GCAAAGTCCGGATGTAGATGCT 60.743 50.000 7.81 0.00 0.00 3.79
3449 3600 1.599542 GCAAAGTCCGGATGTAGATGC 59.400 52.381 7.81 9.55 0.00 3.91
3450 3601 2.905075 TGCAAAGTCCGGATGTAGATG 58.095 47.619 7.81 2.80 0.00 2.90
3451 3602 3.627395 TTGCAAAGTCCGGATGTAGAT 57.373 42.857 7.81 0.00 0.00 1.98
3452 3603 3.531538 GATTGCAAAGTCCGGATGTAGA 58.468 45.455 7.81 0.00 0.00 2.59
3453 3604 2.614057 GGATTGCAAAGTCCGGATGTAG 59.386 50.000 7.81 0.00 0.00 2.74
3454 3605 2.639065 GGATTGCAAAGTCCGGATGTA 58.361 47.619 7.81 0.00 0.00 2.29
3455 3606 1.463674 GGATTGCAAAGTCCGGATGT 58.536 50.000 7.81 0.00 0.00 3.06
3461 3612 2.710902 GGGCCGGATTGCAAAGTCC 61.711 63.158 5.05 6.07 0.00 3.85
3462 3613 2.710902 GGGGCCGGATTGCAAAGTC 61.711 63.158 5.05 0.00 0.00 3.01
3463 3614 1.858739 TAGGGGCCGGATTGCAAAGT 61.859 55.000 5.05 0.00 0.00 2.66
3464 3615 0.468029 ATAGGGGCCGGATTGCAAAG 60.468 55.000 5.05 0.00 0.00 2.77
3465 3616 0.847373 TATAGGGGCCGGATTGCAAA 59.153 50.000 5.05 0.00 0.00 3.68
3466 3617 0.109723 GTATAGGGGCCGGATTGCAA 59.890 55.000 5.05 0.00 0.00 4.08
3467 3618 1.057275 TGTATAGGGGCCGGATTGCA 61.057 55.000 5.05 0.00 0.00 4.08
3468 3619 0.605589 GTGTATAGGGGCCGGATTGC 60.606 60.000 5.05 0.00 0.00 3.56
3469 3620 0.036306 GGTGTATAGGGGCCGGATTG 59.964 60.000 5.05 0.00 0.00 2.67
3470 3621 1.131928 GGGTGTATAGGGGCCGGATT 61.132 60.000 5.05 0.00 0.00 3.01
3471 3622 1.538135 GGGTGTATAGGGGCCGGAT 60.538 63.158 5.05 0.00 0.00 4.18
3472 3623 2.122725 GGGTGTATAGGGGCCGGA 60.123 66.667 5.05 0.00 0.00 5.14
3473 3624 3.622826 CGGGTGTATAGGGGCCGG 61.623 72.222 0.00 0.00 0.00 6.13
3474 3625 4.309950 GCGGGTGTATAGGGGCCG 62.310 72.222 0.00 0.00 0.00 6.13
3475 3626 3.949980 GGCGGGTGTATAGGGGCC 61.950 72.222 0.00 0.00 0.00 5.80
3476 3627 4.309950 CGGCGGGTGTATAGGGGC 62.310 72.222 0.00 0.00 0.00 5.80
3477 3628 2.522436 TCGGCGGGTGTATAGGGG 60.522 66.667 7.21 0.00 0.00 4.79
3478 3629 2.732658 GTCGGCGGGTGTATAGGG 59.267 66.667 7.21 0.00 0.00 3.53
3479 3630 2.732658 GGTCGGCGGGTGTATAGG 59.267 66.667 7.21 0.00 0.00 2.57
3480 3631 2.732658 GGGTCGGCGGGTGTATAG 59.267 66.667 7.21 0.00 0.00 1.31
3481 3632 2.839162 GGGGTCGGCGGGTGTATA 60.839 66.667 7.21 0.00 0.00 1.47
3482 3633 4.791069 AGGGGTCGGCGGGTGTAT 62.791 66.667 7.21 0.00 0.00 2.29
3488 3639 2.040009 AATACATGAGGGGTCGGCGG 62.040 60.000 7.21 0.00 0.00 6.13
3489 3640 0.677288 TAATACATGAGGGGTCGGCG 59.323 55.000 0.00 0.00 0.00 6.46
3490 3641 1.604693 CGTAATACATGAGGGGTCGGC 60.605 57.143 0.00 0.00 0.00 5.54
3491 3642 1.684983 ACGTAATACATGAGGGGTCGG 59.315 52.381 0.00 0.00 0.00 4.79
3492 3643 2.603892 CGACGTAATACATGAGGGGTCG 60.604 54.545 0.00 7.02 39.76 4.79
3493 3644 2.861360 GCGACGTAATACATGAGGGGTC 60.861 54.545 0.00 0.00 0.00 4.46
3494 3645 1.068127 GCGACGTAATACATGAGGGGT 59.932 52.381 0.00 0.00 0.00 4.95
3495 3646 1.067974 TGCGACGTAATACATGAGGGG 59.932 52.381 0.00 0.00 0.00 4.79
3496 3647 2.124903 GTGCGACGTAATACATGAGGG 58.875 52.381 0.00 0.00 0.00 4.30
3497 3648 2.804647 TGTGCGACGTAATACATGAGG 58.195 47.619 0.00 0.00 0.00 3.86
3498 3649 4.374013 CGAATGTGCGACGTAATACATGAG 60.374 45.833 0.00 5.82 34.28 2.90
3499 3650 3.484285 CGAATGTGCGACGTAATACATGA 59.516 43.478 0.00 0.00 34.28 3.07
3500 3651 3.772344 CGAATGTGCGACGTAATACATG 58.228 45.455 10.58 0.00 34.28 3.21
3501 3652 2.217847 GCGAATGTGCGACGTAATACAT 59.782 45.455 0.00 5.50 35.43 2.29
3502 3653 1.584761 GCGAATGTGCGACGTAATACA 59.415 47.619 0.00 0.00 0.00 2.29
3503 3654 1.584761 TGCGAATGTGCGACGTAATAC 59.415 47.619 0.00 0.00 37.81 1.89
3504 3655 1.910688 TGCGAATGTGCGACGTAATA 58.089 45.000 0.00 0.00 37.81 0.98
3505 3656 1.286501 ATGCGAATGTGCGACGTAAT 58.713 45.000 0.00 0.00 37.81 1.89
3506 3657 1.584761 GTATGCGAATGTGCGACGTAA 59.415 47.619 0.00 0.00 37.81 3.18
3507 3658 1.193644 GTATGCGAATGTGCGACGTA 58.806 50.000 0.00 0.00 37.81 3.57
3508 3659 1.739093 CGTATGCGAATGTGCGACGT 61.739 55.000 0.00 0.00 40.10 4.34
3509 3660 1.084915 CGTATGCGAATGTGCGACG 60.085 57.895 0.00 0.00 41.33 5.12
3510 3661 1.193644 TACGTATGCGAATGTGCGAC 58.806 50.000 11.07 0.00 42.00 5.19
3511 3662 1.910688 TTACGTATGCGAATGTGCGA 58.089 45.000 11.07 0.00 42.00 5.10
3512 3663 2.704974 TTTACGTATGCGAATGTGCG 57.295 45.000 11.07 0.00 42.00 5.34
3513 3664 5.329768 CGAAATTTTACGTATGCGAATGTGC 60.330 40.000 11.07 0.00 42.00 4.57
3514 3665 5.954922 TCGAAATTTTACGTATGCGAATGTG 59.045 36.000 11.07 0.00 42.00 3.21
3515 3666 6.097156 TCGAAATTTTACGTATGCGAATGT 57.903 33.333 11.07 0.00 42.00 2.71
3516 3667 7.589205 AATCGAAATTTTACGTATGCGAATG 57.411 32.000 11.07 0.00 42.00 2.67
3517 3668 9.525007 GATAATCGAAATTTTACGTATGCGAAT 57.475 29.630 11.07 0.00 42.00 3.34
3518 3669 7.732583 CGATAATCGAAATTTTACGTATGCGAA 59.267 33.333 11.07 0.00 43.74 4.70
3519 3670 7.113264 TCGATAATCGAAATTTTACGTATGCGA 59.887 33.333 11.07 0.00 46.90 5.10
3520 3671 7.215167 TCGATAATCGAAATTTTACGTATGCG 58.785 34.615 0.19 0.19 46.90 4.73
3536 3687 5.572896 TCGATGTTCATGGATTCGATAATCG 59.427 40.000 7.67 0.00 42.16 3.34
3537 3688 6.951256 TCGATGTTCATGGATTCGATAATC 57.049 37.500 7.67 0.00 40.77 1.75
3538 3689 7.099120 TGATCGATGTTCATGGATTCGATAAT 58.901 34.615 19.17 4.79 46.23 1.28
3539 3690 6.454795 TGATCGATGTTCATGGATTCGATAA 58.545 36.000 19.17 12.64 46.23 1.75
3540 3691 6.024552 TGATCGATGTTCATGGATTCGATA 57.975 37.500 19.17 9.44 46.23 2.92
3542 3693 4.320608 TGATCGATGTTCATGGATTCGA 57.679 40.909 0.54 12.69 42.29 3.71
3543 3694 6.532657 TCATATGATCGATGTTCATGGATTCG 59.467 38.462 0.54 3.54 35.50 3.34
3544 3695 7.838771 TCATATGATCGATGTTCATGGATTC 57.161 36.000 0.54 6.21 35.50 2.52
3545 3696 9.322773 GTATCATATGATCGATGTTCATGGATT 57.677 33.333 21.42 0.00 35.50 3.01
3546 3697 8.480501 TGTATCATATGATCGATGTTCATGGAT 58.519 33.333 21.42 11.17 35.50 3.41
3547 3698 7.839907 TGTATCATATGATCGATGTTCATGGA 58.160 34.615 21.42 4.56 35.50 3.41
3548 3699 8.483307 TTGTATCATATGATCGATGTTCATGG 57.517 34.615 21.42 0.00 35.50 3.66
3555 3706 9.469239 CGAACAATTTGTATCATATGATCGATG 57.531 33.333 21.42 14.37 36.05 3.84
3556 3707 9.423061 TCGAACAATTTGTATCATATGATCGAT 57.577 29.630 21.42 0.00 36.05 3.59
3557 3708 8.810652 TCGAACAATTTGTATCATATGATCGA 57.189 30.769 21.42 16.91 36.05 3.59
3565 3716 9.689976 TTGTTGAATTCGAACAATTTGTATCAT 57.310 25.926 21.75 0.00 38.17 2.45
3566 3717 9.689976 ATTGTTGAATTCGAACAATTTGTATCA 57.310 25.926 26.24 12.00 46.90 2.15
3581 3732 6.932051 TGCTTTGTTTCGAATTGTTGAATTC 58.068 32.000 0.00 0.00 42.84 2.17
3582 3733 6.900568 TGCTTTGTTTCGAATTGTTGAATT 57.099 29.167 0.00 0.00 34.29 2.17
3583 3734 6.900568 TTGCTTTGTTTCGAATTGTTGAAT 57.099 29.167 0.00 0.00 0.00 2.57
3584 3735 6.712241 TTTGCTTTGTTTCGAATTGTTGAA 57.288 29.167 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.