Multiple sequence alignment - TraesCS6B01G281600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G281600 chr6B 100.000 4693 0 0 1 4693 507673713 507669021 0.000000e+00 8667
1 TraesCS6B01G281600 chr6B 86.667 105 12 2 591 694 659832493 659832596 1.070000e-21 115
2 TraesCS6B01G281600 chr6A 88.659 3280 186 86 779 4012 454635878 454639017 0.000000e+00 3825
3 TraesCS6B01G281600 chr6A 88.679 106 12 0 589 694 570696256 570696151 3.810000e-26 130
4 TraesCS6B01G281600 chr6A 88.660 97 3 3 4473 4562 454639396 454639491 1.380000e-20 111
5 TraesCS6B01G281600 chr6D 97.321 1717 37 6 2370 4080 316625952 316627665 0.000000e+00 2907
6 TraesCS6B01G281600 chr6D 95.885 1604 43 13 779 2377 316624291 316625876 0.000000e+00 2575
7 TraesCS6B01G281600 chr6D 91.544 544 13 5 4164 4692 316629609 316630134 0.000000e+00 719
8 TraesCS6B01G281600 chr6D 87.647 170 17 2 4004 4173 316627678 316627843 1.330000e-45 195
9 TraesCS6B01G281600 chr6D 84.615 156 24 0 4015 4170 338408404 338408559 6.290000e-34 156
10 TraesCS6B01G281600 chr6D 90.654 107 10 0 589 695 425095502 425095608 4.900000e-30 143
11 TraesCS6B01G281600 chr1B 95.925 589 24 0 1 589 629847369 629847957 0.000000e+00 955
12 TraesCS6B01G281600 chr2B 95.578 588 25 1 1 588 790914542 790915128 0.000000e+00 941
13 TraesCS6B01G281600 chr5D 95.424 590 25 2 1 589 424878764 424878176 0.000000e+00 939
14 TraesCS6B01G281600 chr3D 95.408 588 26 1 1 588 288315060 288314474 0.000000e+00 935
15 TraesCS6B01G281600 chr1D 95.246 589 26 2 1 588 206086056 206085469 0.000000e+00 931
16 TraesCS6B01G281600 chr1D 94.932 592 26 3 1 590 247837699 247838288 0.000000e+00 924
17 TraesCS6B01G281600 chr1D 83.951 162 21 5 4012 4170 370219048 370219207 2.930000e-32 150
18 TraesCS6B01G281600 chr1D 83.766 154 24 1 4015 4167 356362218 356362371 1.360000e-30 145
19 TraesCS6B01G281600 chr2D 95.085 590 26 3 1 589 330211358 330211945 0.000000e+00 926
20 TraesCS6B01G281600 chr2D 83.851 161 25 1 4011 4170 524963804 524963644 8.130000e-33 152
21 TraesCS6B01G281600 chr5A 94.915 590 28 2 1 589 547115975 547116563 0.000000e+00 922
22 TraesCS6B01G281600 chr1A 94.924 591 27 2 1 589 98494657 98495246 0.000000e+00 922
23 TraesCS6B01G281600 chr4D 87.821 156 19 0 4015 4170 36603047 36603202 2.880000e-42 183
24 TraesCS6B01G281600 chr4D 85.256 156 23 0 4010 4165 3590640 3590485 1.350000e-35 161
25 TraesCS6B01G281600 chr5B 92.793 111 7 1 589 698 44475179 44475289 4.860000e-35 159
26 TraesCS6B01G281600 chr2A 84.211 152 23 1 4015 4165 608605390 608605541 3.780000e-31 147
27 TraesCS6B01G281600 chrUn 89.524 105 9 1 593 695 94271099 94271203 1.060000e-26 132
28 TraesCS6B01G281600 chr4A 91.463 82 7 0 614 695 730781506 730781587 3.840000e-21 113
29 TraesCS6B01G281600 chr3B 85.185 108 15 1 589 695 237624288 237624181 4.960000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G281600 chr6B 507669021 507673713 4692 True 8667 8667 100.00000 1 4693 1 chr6B.!!$R1 4692
1 TraesCS6B01G281600 chr6A 454635878 454639491 3613 False 1968 3825 88.65950 779 4562 2 chr6A.!!$F1 3783
2 TraesCS6B01G281600 chr6D 316624291 316630134 5843 False 1599 2907 93.09925 779 4692 4 chr6D.!!$F3 3913
3 TraesCS6B01G281600 chr1B 629847369 629847957 588 False 955 955 95.92500 1 589 1 chr1B.!!$F1 588
4 TraesCS6B01G281600 chr2B 790914542 790915128 586 False 941 941 95.57800 1 588 1 chr2B.!!$F1 587
5 TraesCS6B01G281600 chr5D 424878176 424878764 588 True 939 939 95.42400 1 589 1 chr5D.!!$R1 588
6 TraesCS6B01G281600 chr3D 288314474 288315060 586 True 935 935 95.40800 1 588 1 chr3D.!!$R1 587
7 TraesCS6B01G281600 chr1D 206085469 206086056 587 True 931 931 95.24600 1 588 1 chr1D.!!$R1 587
8 TraesCS6B01G281600 chr1D 247837699 247838288 589 False 924 924 94.93200 1 590 1 chr1D.!!$F1 589
9 TraesCS6B01G281600 chr2D 330211358 330211945 587 False 926 926 95.08500 1 589 1 chr2D.!!$F1 588
10 TraesCS6B01G281600 chr5A 547115975 547116563 588 False 922 922 94.91500 1 589 1 chr5A.!!$F1 588
11 TraesCS6B01G281600 chr1A 98494657 98495246 589 False 922 922 94.92400 1 589 1 chr1A.!!$F1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 496 0.030638 GTGTTTCGGCTGTGTGCATT 59.969 50.0 0.00 0.00 45.15 3.56 F
722 724 0.161024 GCTTTATCGATGGCGTACGC 59.839 55.0 31.54 31.54 38.98 4.42 F
724 726 0.248580 TTTATCGATGGCGTACGCGT 60.249 50.0 31.78 23.43 43.06 6.01 F
928 930 0.583438 CAATGTCTATCCAAGCGCGG 59.417 55.0 8.83 0.00 0.00 6.46 F
2500 2670 0.595095 CTGTTGTTGAAGGAGCTGCC 59.405 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 2402 2.674852 ACGAGCATGCATACAACTTGAG 59.325 45.455 21.98 0.00 0.00 3.02 R
2500 2670 1.450312 CTCTAGCCCACCGCCAAAG 60.450 63.158 0.00 0.00 38.78 2.77 R
2566 2736 2.217750 TGTATGAAACTTGCGCACTGT 58.782 42.857 11.12 9.89 0.00 3.55 R
2876 3046 5.902613 TTTAGGATGCAATTCCTCACTTG 57.097 39.130 12.22 0.00 42.71 3.16 R
4170 4461 0.676466 TGCTTGTTCCGGCAGGTATG 60.676 55.000 1.81 0.00 39.05 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 3.560068 GTCAAGTTTATATCCGCCCACAG 59.440 47.826 0.00 0.00 0.00 3.66
137 138 9.058424 GTATTTCAAATAGGTTCAAAACGCTAC 57.942 33.333 0.00 0.00 0.00 3.58
141 142 8.556213 TCAAATAGGTTCAAAACGCTACTAAT 57.444 30.769 0.00 0.00 0.00 1.73
364 365 1.514087 CCAACATGGATGGCAGCAC 59.486 57.895 4.64 0.00 40.96 4.40
414 415 0.685097 ACATAGGCACAGTGTCGGTT 59.315 50.000 1.61 0.00 0.00 4.44
440 441 9.524496 TTATAGGACTCTACTATTGCCGATTTA 57.476 33.333 0.00 0.00 33.46 1.40
495 496 0.030638 GTGTTTCGGCTGTGTGCATT 59.969 50.000 0.00 0.00 45.15 3.56
512 513 2.478134 GCATTCTAGTTATGCAGAGGCG 59.522 50.000 20.32 0.00 45.93 5.52
603 605 0.250770 AAAAAGTCTCGGTCTGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
604 606 1.415672 AAAAGTCTCGGTCTGGGGCA 61.416 55.000 0.00 0.00 0.00 5.36
605 607 2.113243 AAAGTCTCGGTCTGGGGCAC 62.113 60.000 0.00 0.00 0.00 5.01
635 637 2.621526 GTTAGGCCAACCCCATTATTCG 59.378 50.000 5.01 0.00 36.11 3.34
636 638 0.923358 AGGCCAACCCCATTATTCGA 59.077 50.000 5.01 0.00 36.11 3.71
637 639 1.133792 AGGCCAACCCCATTATTCGAG 60.134 52.381 5.01 0.00 36.11 4.04
638 640 1.409661 GGCCAACCCCATTATTCGAGT 60.410 52.381 0.00 0.00 0.00 4.18
639 641 2.375146 GCCAACCCCATTATTCGAGTT 58.625 47.619 0.00 0.00 0.00 3.01
640 642 2.099098 GCCAACCCCATTATTCGAGTTG 59.901 50.000 3.63 3.63 35.51 3.16
641 643 3.352648 CCAACCCCATTATTCGAGTTGT 58.647 45.455 8.50 0.00 34.26 3.32
642 644 4.519213 CCAACCCCATTATTCGAGTTGTA 58.481 43.478 8.50 0.00 34.26 2.41
643 645 5.130350 CCAACCCCATTATTCGAGTTGTAT 58.870 41.667 8.50 0.00 34.26 2.29
644 646 5.238650 CCAACCCCATTATTCGAGTTGTATC 59.761 44.000 8.50 0.00 34.26 2.24
645 647 4.969484 ACCCCATTATTCGAGTTGTATCC 58.031 43.478 0.00 0.00 0.00 2.59
646 648 4.202430 ACCCCATTATTCGAGTTGTATCCC 60.202 45.833 0.00 0.00 0.00 3.85
647 649 4.202419 CCCCATTATTCGAGTTGTATCCCA 60.202 45.833 0.00 0.00 0.00 4.37
648 650 4.755123 CCCATTATTCGAGTTGTATCCCAC 59.245 45.833 0.00 0.00 0.00 4.61
649 651 4.755123 CCATTATTCGAGTTGTATCCCACC 59.245 45.833 0.00 0.00 0.00 4.61
650 652 4.411256 TTATTCGAGTTGTATCCCACCC 57.589 45.455 0.00 0.00 0.00 4.61
651 653 1.646912 TTCGAGTTGTATCCCACCCA 58.353 50.000 0.00 0.00 0.00 4.51
652 654 1.874129 TCGAGTTGTATCCCACCCAT 58.126 50.000 0.00 0.00 0.00 4.00
653 655 2.193127 TCGAGTTGTATCCCACCCATT 58.807 47.619 0.00 0.00 0.00 3.16
654 656 2.093181 TCGAGTTGTATCCCACCCATTG 60.093 50.000 0.00 0.00 0.00 2.82
655 657 2.355716 CGAGTTGTATCCCACCCATTGT 60.356 50.000 0.00 0.00 0.00 2.71
656 658 3.016736 GAGTTGTATCCCACCCATTGTG 58.983 50.000 0.00 0.00 45.01 3.33
671 673 7.959658 ACCCATTGTGATCTTTGATGAATAA 57.040 32.000 0.00 0.00 0.00 1.40
672 674 8.365060 ACCCATTGTGATCTTTGATGAATAAA 57.635 30.769 0.00 0.00 0.00 1.40
673 675 8.814931 ACCCATTGTGATCTTTGATGAATAAAA 58.185 29.630 0.00 0.00 0.00 1.52
674 676 9.826574 CCCATTGTGATCTTTGATGAATAAAAT 57.173 29.630 0.00 0.00 0.00 1.82
679 681 9.153721 TGTGATCTTTGATGAATAAAATTTGGC 57.846 29.630 0.00 0.00 0.00 4.52
680 682 9.374838 GTGATCTTTGATGAATAAAATTTGGCT 57.625 29.630 0.00 0.00 0.00 4.75
681 683 9.947433 TGATCTTTGATGAATAAAATTTGGCTT 57.053 25.926 0.00 0.00 0.00 4.35
684 686 9.218440 TCTTTGATGAATAAAATTTGGCTTTCC 57.782 29.630 0.00 0.00 0.00 3.13
685 687 7.920160 TTGATGAATAAAATTTGGCTTTCCC 57.080 32.000 0.00 0.00 0.00 3.97
686 688 6.413892 TGATGAATAAAATTTGGCTTTCCCC 58.586 36.000 0.00 0.00 0.00 4.81
687 689 5.832539 TGAATAAAATTTGGCTTTCCCCA 57.167 34.783 0.00 0.00 0.00 4.96
688 690 6.192970 TGAATAAAATTTGGCTTTCCCCAA 57.807 33.333 0.00 0.00 42.87 4.12
711 713 3.405170 AAAATCTGCGTGGCTTTATCG 57.595 42.857 0.00 0.00 0.00 2.92
712 714 2.309528 AATCTGCGTGGCTTTATCGA 57.690 45.000 0.00 0.00 0.00 3.59
713 715 2.533266 ATCTGCGTGGCTTTATCGAT 57.467 45.000 2.16 2.16 0.00 3.59
714 716 1.570813 TCTGCGTGGCTTTATCGATG 58.429 50.000 8.54 0.00 0.00 3.84
715 717 0.583438 CTGCGTGGCTTTATCGATGG 59.417 55.000 8.54 0.00 0.00 3.51
716 718 1.279840 GCGTGGCTTTATCGATGGC 59.720 57.895 8.54 9.52 0.00 4.40
717 719 1.564622 CGTGGCTTTATCGATGGCG 59.435 57.895 8.54 0.00 39.35 5.69
718 720 1.151777 CGTGGCTTTATCGATGGCGT 61.152 55.000 8.54 0.00 38.98 5.68
719 721 1.860676 GTGGCTTTATCGATGGCGTA 58.139 50.000 8.54 0.56 38.98 4.42
720 722 1.525619 GTGGCTTTATCGATGGCGTAC 59.474 52.381 8.54 8.62 38.98 3.67
721 723 0.782384 GGCTTTATCGATGGCGTACG 59.218 55.000 11.84 11.84 38.98 3.67
722 724 0.161024 GCTTTATCGATGGCGTACGC 59.839 55.000 31.54 31.54 38.98 4.42
723 725 0.429736 CTTTATCGATGGCGTACGCG 59.570 55.000 31.78 19.13 43.06 6.01
724 726 0.248580 TTTATCGATGGCGTACGCGT 60.249 50.000 31.78 23.43 43.06 6.01
725 727 0.931202 TTATCGATGGCGTACGCGTG 60.931 55.000 31.78 20.88 43.06 5.34
726 728 2.050639 TATCGATGGCGTACGCGTGT 62.051 55.000 31.78 20.54 43.06 4.49
727 729 2.877360 ATCGATGGCGTACGCGTGTT 62.877 55.000 31.78 17.10 43.06 3.32
728 730 2.693285 GATGGCGTACGCGTGTTC 59.307 61.111 31.78 20.94 43.06 3.18
729 731 1.804326 GATGGCGTACGCGTGTTCT 60.804 57.895 31.78 13.44 43.06 3.01
730 732 1.740043 GATGGCGTACGCGTGTTCTC 61.740 60.000 31.78 17.54 43.06 2.87
731 733 3.177249 GGCGTACGCGTGTTCTCC 61.177 66.667 31.78 13.24 43.06 3.71
732 734 3.530104 GCGTACGCGTGTTCTCCG 61.530 66.667 26.17 14.46 40.81 4.63
733 735 2.872925 CGTACGCGTGTTCTCCGG 60.873 66.667 24.59 0.00 0.00 5.14
734 736 2.562912 GTACGCGTGTTCTCCGGA 59.437 61.111 24.59 2.93 0.00 5.14
735 737 1.138247 GTACGCGTGTTCTCCGGAT 59.862 57.895 24.59 0.00 0.00 4.18
736 738 1.138036 TACGCGTGTTCTCCGGATG 59.862 57.895 24.59 0.00 0.00 3.51
737 739 1.307355 TACGCGTGTTCTCCGGATGA 61.307 55.000 24.59 1.41 0.00 2.92
738 740 2.158959 CGCGTGTTCTCCGGATGAC 61.159 63.158 3.57 7.56 0.00 3.06
739 741 1.810030 GCGTGTTCTCCGGATGACC 60.810 63.158 3.57 0.00 0.00 4.02
801 803 1.152922 GGGTTTCCGGTTGGTCACA 60.153 57.895 0.00 0.00 36.30 3.58
804 806 1.544759 GGTTTCCGGTTGGTCACATCT 60.545 52.381 0.00 0.00 36.30 2.90
811 813 1.021390 GTTGGTCACATCTCCAGCGG 61.021 60.000 0.00 0.00 35.05 5.52
817 819 0.969149 CACATCTCCAGCGGCCTATA 59.031 55.000 0.00 0.00 0.00 1.31
858 860 3.708220 GAGCTGCGGAAGAGTCGGG 62.708 68.421 0.00 0.00 0.00 5.14
881 883 3.876589 TTTGGCCGTCTCCTCACGC 62.877 63.158 0.00 0.00 38.52 5.34
886 888 4.156622 CGTCTCCTCACGCGCGTA 62.157 66.667 37.24 19.71 31.96 4.42
888 890 3.807538 TCTCCTCACGCGCGTACC 61.808 66.667 37.24 0.00 0.00 3.34
894 896 3.467119 CACGCGCGTACCACTGAC 61.467 66.667 37.24 0.00 0.00 3.51
906 908 2.524394 ACTGACCCTGCCACGAGT 60.524 61.111 0.00 0.00 0.00 4.18
907 909 2.262915 CTGACCCTGCCACGAGTC 59.737 66.667 0.00 0.00 0.00 3.36
908 910 2.523168 TGACCCTGCCACGAGTCA 60.523 61.111 0.00 0.00 36.92 3.41
928 930 0.583438 CAATGTCTATCCAAGCGCGG 59.417 55.000 8.83 0.00 0.00 6.46
999 1001 3.827898 CTCGCCCGACTCTCCACC 61.828 72.222 0.00 0.00 0.00 4.61
1331 1350 2.359850 GCGCCATGGACAAGGTGA 60.360 61.111 18.40 0.00 37.61 4.02
1332 1351 1.971167 GCGCCATGGACAAGGTGAA 60.971 57.895 18.40 0.00 37.61 3.18
1340 1359 1.371558 GACAAGGTGAAGGCCGACT 59.628 57.895 0.00 0.00 0.00 4.18
1561 1580 7.687941 AAGTGGTCCAGTACTTAATTTCATG 57.312 36.000 0.00 0.00 35.50 3.07
2148 2212 6.992063 ATCCATTTCCTGATCGCAATATAC 57.008 37.500 0.00 0.00 0.00 1.47
2273 2337 9.918630 AGGATGAAACATTTTAATATAGCATGC 57.081 29.630 10.51 10.51 0.00 4.06
2338 2402 0.798776 AAAGCACTGTGTATCGCTGC 59.201 50.000 9.86 0.00 34.26 5.25
2439 2609 8.840833 TCTAGTATGTTCATAACACTTGCAAA 57.159 30.769 0.00 0.00 45.50 3.68
2500 2670 0.595095 CTGTTGTTGAAGGAGCTGCC 59.405 55.000 0.00 0.00 0.00 4.85
2573 2743 6.183360 TGGTATTGCTTTTATTCTACAGTGCG 60.183 38.462 0.00 0.00 0.00 5.34
2807 2977 3.627577 CGCCTTACAAATTGACCTAGCAT 59.372 43.478 0.00 0.00 0.00 3.79
2876 3046 9.542462 TGCATTACTCCATACTAGTACAAATTC 57.458 33.333 4.31 0.00 0.00 2.17
2932 3102 6.891908 AGCTGTTATGTGGATTATTGTCCTTT 59.108 34.615 0.00 0.00 39.12 3.11
2980 3150 7.148018 TGGTTTGAGAATTGCTGGAATATCTTC 60.148 37.037 0.00 0.00 0.00 2.87
3193 3367 5.307196 TGACTTCTTGTTACTTAAGGAGGCT 59.693 40.000 7.53 0.00 39.20 4.58
3258 3434 1.405661 GCAGGGGTAGTGAACTACTGC 60.406 57.143 17.71 15.71 46.06 4.40
3270 3446 1.741770 CTACTGCGTTCCTGGTGGC 60.742 63.158 0.00 0.00 0.00 5.01
3322 3498 5.298347 CCCGGGAGATAAATCAGAAAGTAC 58.702 45.833 18.48 0.00 0.00 2.73
3326 3502 6.459848 CGGGAGATAAATCAGAAAGTACGACT 60.460 42.308 0.00 0.00 0.00 4.18
3327 3503 7.266400 GGGAGATAAATCAGAAAGTACGACTT 58.734 38.462 0.00 0.00 40.80 3.01
3561 3740 1.000896 AAGGCCATCAACGAAGGGG 60.001 57.895 5.01 0.00 0.00 4.79
3800 3995 2.057922 ACCTGAAGAATGTGTCTGGGT 58.942 47.619 0.00 0.00 36.40 4.51
3904 4108 3.873910 TGTAAGGTAGGAAAGCTGCATC 58.126 45.455 1.02 0.00 35.65 3.91
4001 4205 1.354040 GACTGGAGTCGCTGATTGTG 58.646 55.000 0.00 0.00 35.12 3.33
4107 4398 5.046520 ACCTACTTTAGAGTGTGGATTCACC 60.047 44.000 0.46 0.00 42.98 4.02
4119 4410 4.770010 TGTGGATTCACCCATTTTACTTCC 59.230 41.667 0.46 0.00 42.98 3.46
4122 4413 6.833933 GTGGATTCACCCATTTTACTTCCTAT 59.166 38.462 0.00 0.00 38.66 2.57
4175 4466 8.813643 ACTTATATTTACGAACAGAGCATACC 57.186 34.615 0.00 0.00 0.00 2.73
4210 6289 0.036294 GCCGGCTCAAACCTAGAACT 60.036 55.000 22.15 0.00 0.00 3.01
4262 6342 0.033405 AGCCAGCCATGATGAGCTTT 60.033 50.000 5.80 0.00 37.18 3.51
4316 6429 1.840650 CATGGTGGTGGGGGCAAAA 60.841 57.895 0.00 0.00 0.00 2.44
4332 6445 3.530535 GCAAAACCCAAGAGAAGCAAAA 58.469 40.909 0.00 0.00 0.00 2.44
4427 6540 1.950973 GACGAGAGCTCCCCAAGACC 61.951 65.000 10.93 0.00 0.00 3.85
4462 6575 1.988956 AGGCTCCAGACTCCTGCAG 60.989 63.158 6.78 6.78 39.07 4.41
4470 6583 1.140312 AGACTCCTGCAGTTTTCCCA 58.860 50.000 13.81 0.00 34.41 4.37
4539 6659 0.773644 AGGAGAAGCCATGTGGTTGT 59.226 50.000 0.35 0.41 40.02 3.32
4676 6796 5.914898 AACTATTTCTTATGTTGGGGCAC 57.085 39.130 0.00 0.00 0.00 5.01
4680 6800 4.799564 TTTCTTATGTTGGGGCACAATC 57.200 40.909 5.01 0.00 41.95 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 138 1.512926 GCATACGCTCCCACCATTAG 58.487 55.000 0.00 0.00 34.30 1.73
141 142 0.978667 TAAGGCATACGCTCCCACCA 60.979 55.000 0.00 0.00 38.60 4.17
206 207 3.495753 GCCTGCAAAGGAGAAACATTTTG 59.504 43.478 0.00 0.00 34.51 2.44
213 214 4.220602 GGAAAATAGCCTGCAAAGGAGAAA 59.779 41.667 0.00 0.00 0.00 2.52
355 356 2.360350 CGGAGGTTGTGCTGCCAT 60.360 61.111 0.00 0.00 0.00 4.40
414 415 8.418597 AAATCGGCAATAGTAGAGTCCTATAA 57.581 34.615 0.00 0.00 0.00 0.98
495 496 1.040646 CCCGCCTCTGCATAACTAGA 58.959 55.000 0.00 0.00 37.32 2.43
512 513 1.767759 AGCATTATGAGCAACACCCC 58.232 50.000 0.00 0.00 0.00 4.95
589 591 4.083862 GGTGCCCCAGACCGAGAC 62.084 72.222 0.00 0.00 0.00 3.36
590 592 3.924013 ATGGTGCCCCAGACCGAGA 62.924 63.158 0.00 0.00 46.15 4.04
591 593 3.391665 GATGGTGCCCCAGACCGAG 62.392 68.421 0.00 0.00 46.15 4.63
592 594 3.399181 GATGGTGCCCCAGACCGA 61.399 66.667 0.00 0.00 46.15 4.69
593 595 3.391665 GAGATGGTGCCCCAGACCG 62.392 68.421 0.00 0.00 46.15 4.79
594 596 1.997874 AGAGATGGTGCCCCAGACC 60.998 63.158 0.00 0.00 46.15 3.85
595 597 1.222936 CAGAGATGGTGCCCCAGAC 59.777 63.158 0.00 0.00 46.15 3.51
596 598 1.997311 CCAGAGATGGTGCCCCAGA 60.997 63.158 0.00 0.00 46.15 3.86
597 599 1.856539 AACCAGAGATGGTGCCCCAG 61.857 60.000 0.00 0.00 46.15 4.45
599 601 0.181350 CTAACCAGAGATGGTGCCCC 59.819 60.000 0.00 0.00 42.20 5.80
600 602 0.181350 CCTAACCAGAGATGGTGCCC 59.819 60.000 0.00 0.00 42.20 5.36
601 603 0.464554 GCCTAACCAGAGATGGTGCC 60.465 60.000 0.00 0.00 42.20 5.01
602 604 0.464554 GGCCTAACCAGAGATGGTGC 60.465 60.000 0.00 0.35 42.20 5.01
603 605 0.911769 TGGCCTAACCAGAGATGGTG 59.088 55.000 3.32 0.00 46.36 4.17
604 606 3.417330 TGGCCTAACCAGAGATGGT 57.583 52.632 3.32 0.00 46.36 3.55
614 616 2.621526 CGAATAATGGGGTTGGCCTAAC 59.378 50.000 3.32 6.92 38.60 2.34
615 617 2.510382 TCGAATAATGGGGTTGGCCTAA 59.490 45.455 3.32 0.00 34.45 2.69
616 618 2.105821 CTCGAATAATGGGGTTGGCCTA 59.894 50.000 3.32 0.00 34.45 3.93
617 619 0.923358 TCGAATAATGGGGTTGGCCT 59.077 50.000 3.32 0.00 34.45 5.19
618 620 1.318576 CTCGAATAATGGGGTTGGCC 58.681 55.000 0.00 0.00 0.00 5.36
619 621 2.052782 ACTCGAATAATGGGGTTGGC 57.947 50.000 0.00 0.00 0.00 4.52
620 622 3.352648 ACAACTCGAATAATGGGGTTGG 58.647 45.455 9.95 0.00 38.49 3.77
621 623 5.238650 GGATACAACTCGAATAATGGGGTTG 59.761 44.000 4.17 4.17 39.58 3.77
622 624 5.374071 GGATACAACTCGAATAATGGGGTT 58.626 41.667 0.00 0.00 0.00 4.11
623 625 4.202430 GGGATACAACTCGAATAATGGGGT 60.202 45.833 0.00 0.00 39.74 4.95
624 626 4.202419 TGGGATACAACTCGAATAATGGGG 60.202 45.833 0.00 0.00 39.74 4.96
625 627 4.755123 GTGGGATACAACTCGAATAATGGG 59.245 45.833 0.00 0.00 39.74 4.00
626 628 4.755123 GGTGGGATACAACTCGAATAATGG 59.245 45.833 0.00 0.00 39.74 3.16
627 629 4.755123 GGGTGGGATACAACTCGAATAATG 59.245 45.833 0.00 0.00 36.85 1.90
628 630 4.410883 TGGGTGGGATACAACTCGAATAAT 59.589 41.667 0.00 0.00 36.85 1.28
629 631 3.775866 TGGGTGGGATACAACTCGAATAA 59.224 43.478 0.00 0.00 36.85 1.40
630 632 3.376636 TGGGTGGGATACAACTCGAATA 58.623 45.455 0.00 0.00 36.85 1.75
631 633 2.193127 TGGGTGGGATACAACTCGAAT 58.807 47.619 0.00 0.00 36.85 3.34
632 634 1.646912 TGGGTGGGATACAACTCGAA 58.353 50.000 0.00 0.00 36.85 3.71
633 635 1.874129 ATGGGTGGGATACAACTCGA 58.126 50.000 0.00 0.00 36.85 4.04
634 636 2.288666 CAATGGGTGGGATACAACTCG 58.711 52.381 0.00 0.00 36.85 4.18
635 637 3.016736 CACAATGGGTGGGATACAACTC 58.983 50.000 0.00 0.00 44.04 3.01
636 638 3.085952 CACAATGGGTGGGATACAACT 57.914 47.619 0.00 0.00 44.04 3.16
643 645 2.378208 TCAAAGATCACAATGGGTGGGA 59.622 45.455 0.00 0.00 46.15 4.37
647 649 7.959658 TTATTCATCAAAGATCACAATGGGT 57.040 32.000 0.00 0.00 0.00 4.51
648 650 9.826574 ATTTTATTCATCAAAGATCACAATGGG 57.173 29.630 0.00 0.00 0.00 4.00
653 655 9.153721 GCCAAATTTTATTCATCAAAGATCACA 57.846 29.630 0.00 0.00 0.00 3.58
654 656 9.374838 AGCCAAATTTTATTCATCAAAGATCAC 57.625 29.630 0.00 0.00 0.00 3.06
655 657 9.947433 AAGCCAAATTTTATTCATCAAAGATCA 57.053 25.926 0.00 0.00 0.00 2.92
658 660 9.218440 GGAAAGCCAAATTTTATTCATCAAAGA 57.782 29.630 0.00 0.00 0.00 2.52
659 661 8.453320 GGGAAAGCCAAATTTTATTCATCAAAG 58.547 33.333 0.00 0.00 35.15 2.77
660 662 7.392953 GGGGAAAGCCAAATTTTATTCATCAAA 59.607 33.333 0.00 0.00 35.15 2.69
661 663 6.883756 GGGGAAAGCCAAATTTTATTCATCAA 59.116 34.615 0.00 0.00 35.15 2.57
662 664 6.013032 TGGGGAAAGCCAAATTTTATTCATCA 60.013 34.615 0.00 0.00 35.15 3.07
663 665 6.413892 TGGGGAAAGCCAAATTTTATTCATC 58.586 36.000 0.00 0.00 35.15 2.92
664 666 6.385766 TGGGGAAAGCCAAATTTTATTCAT 57.614 33.333 0.00 0.00 35.15 2.57
665 667 5.832539 TGGGGAAAGCCAAATTTTATTCA 57.167 34.783 0.00 0.00 35.15 2.57
666 668 7.517614 TTTTGGGGAAAGCCAAATTTTATTC 57.482 32.000 0.00 0.00 36.11 1.75
667 669 7.904558 TTTTTGGGGAAAGCCAAATTTTATT 57.095 28.000 0.00 0.00 36.11 1.40
690 692 3.438781 TCGATAAAGCCACGCAGATTTTT 59.561 39.130 0.00 0.00 0.00 1.94
691 693 3.006940 TCGATAAAGCCACGCAGATTTT 58.993 40.909 0.00 0.00 0.00 1.82
692 694 2.627945 TCGATAAAGCCACGCAGATTT 58.372 42.857 0.00 0.00 0.00 2.17
693 695 2.309528 TCGATAAAGCCACGCAGATT 57.690 45.000 0.00 0.00 0.00 2.40
694 696 2.138320 CATCGATAAAGCCACGCAGAT 58.862 47.619 0.00 0.00 0.00 2.90
695 697 1.570813 CATCGATAAAGCCACGCAGA 58.429 50.000 0.00 0.00 0.00 4.26
696 698 0.583438 CCATCGATAAAGCCACGCAG 59.417 55.000 0.00 0.00 0.00 5.18
697 699 1.436195 GCCATCGATAAAGCCACGCA 61.436 55.000 0.00 0.00 0.00 5.24
698 700 1.279840 GCCATCGATAAAGCCACGC 59.720 57.895 0.00 0.00 0.00 5.34
699 701 1.151777 ACGCCATCGATAAAGCCACG 61.152 55.000 0.00 0.00 39.41 4.94
700 702 1.525619 GTACGCCATCGATAAAGCCAC 59.474 52.381 0.00 0.00 39.41 5.01
701 703 1.860676 GTACGCCATCGATAAAGCCA 58.139 50.000 0.00 0.00 39.41 4.75
702 704 0.782384 CGTACGCCATCGATAAAGCC 59.218 55.000 0.52 0.00 39.41 4.35
703 705 0.161024 GCGTACGCCATCGATAAAGC 59.839 55.000 29.51 0.46 39.41 3.51
704 706 0.429736 CGCGTACGCCATCGATAAAG 59.570 55.000 32.64 12.05 39.41 1.85
705 707 0.248580 ACGCGTACGCCATCGATAAA 60.249 50.000 32.64 0.00 45.53 1.40
706 708 0.931202 CACGCGTACGCCATCGATAA 60.931 55.000 32.64 0.00 45.53 1.75
707 709 1.369568 CACGCGTACGCCATCGATA 60.370 57.895 32.64 0.00 45.53 2.92
708 710 2.654085 CACGCGTACGCCATCGAT 60.654 61.111 32.64 10.01 45.53 3.59
709 711 3.613952 AACACGCGTACGCCATCGA 62.614 57.895 32.64 0.00 45.53 3.59
710 712 3.121808 GAACACGCGTACGCCATCG 62.122 63.158 32.64 21.31 45.53 3.84
711 713 1.740043 GAGAACACGCGTACGCCATC 61.740 60.000 32.64 23.49 45.53 3.51
712 714 1.804326 GAGAACACGCGTACGCCAT 60.804 57.895 32.64 19.55 45.53 4.40
713 715 2.429571 GAGAACACGCGTACGCCA 60.430 61.111 32.64 0.00 45.53 5.69
714 716 3.177249 GGAGAACACGCGTACGCC 61.177 66.667 32.64 18.94 45.53 5.68
715 717 3.530104 CGGAGAACACGCGTACGC 61.530 66.667 29.83 29.83 45.53 4.42
717 719 1.138047 CATCCGGAGAACACGCGTAC 61.138 60.000 13.44 6.81 0.00 3.67
718 720 1.138036 CATCCGGAGAACACGCGTA 59.862 57.895 13.44 0.00 0.00 4.42
719 721 2.126071 CATCCGGAGAACACGCGT 60.126 61.111 11.34 5.58 0.00 6.01
720 722 2.158959 GTCATCCGGAGAACACGCG 61.159 63.158 11.34 3.53 0.00 6.01
721 723 1.810030 GGTCATCCGGAGAACACGC 60.810 63.158 11.34 0.00 0.00 5.34
722 724 4.496670 GGTCATCCGGAGAACACG 57.503 61.111 11.34 0.00 0.00 4.49
783 785 0.538746 ATGTGACCAACCGGAAACCC 60.539 55.000 9.46 0.00 35.59 4.11
793 795 1.296392 CCGCTGGAGATGTGACCAA 59.704 57.895 0.00 0.00 35.67 3.67
801 803 1.076350 AGACTATAGGCCGCTGGAGAT 59.924 52.381 0.59 0.00 0.00 2.75
804 806 0.185175 TGAGACTATAGGCCGCTGGA 59.815 55.000 0.59 0.00 0.00 3.86
811 813 0.661552 TGTCGCGTGAGACTATAGGC 59.338 55.000 5.77 0.00 41.47 3.93
840 842 2.202676 CCGACTCTTCCGCAGCTC 60.203 66.667 0.00 0.00 0.00 4.09
841 843 3.764466 CCCGACTCTTCCGCAGCT 61.764 66.667 0.00 0.00 0.00 4.24
842 844 4.821589 CCCCGACTCTTCCGCAGC 62.822 72.222 0.00 0.00 0.00 5.25
843 845 4.148825 CCCCCGACTCTTCCGCAG 62.149 72.222 0.00 0.00 0.00 5.18
844 846 4.689549 TCCCCCGACTCTTCCGCA 62.690 66.667 0.00 0.00 0.00 5.69
850 852 1.303282 GCCAAATTCCCCCGACTCT 59.697 57.895 0.00 0.00 0.00 3.24
858 860 0.748367 GAGGAGACGGCCAAATTCCC 60.748 60.000 2.24 0.00 0.00 3.97
886 888 3.941188 CGTGGCAGGGTCAGTGGT 61.941 66.667 0.00 0.00 0.00 4.16
888 890 2.047844 CTCGTGGCAGGGTCAGTG 60.048 66.667 7.42 0.00 0.00 3.66
894 896 1.003355 ATTGTGACTCGTGGCAGGG 60.003 57.895 7.42 0.94 0.00 4.45
906 908 2.279741 GCGCTTGGATAGACATTGTGA 58.720 47.619 0.00 0.00 0.00 3.58
907 909 1.004610 CGCGCTTGGATAGACATTGTG 60.005 52.381 5.56 0.00 0.00 3.33
908 910 1.290203 CGCGCTTGGATAGACATTGT 58.710 50.000 5.56 0.00 0.00 2.71
928 930 3.426568 GGCAGAGTCAGCAACCGC 61.427 66.667 9.93 0.00 38.99 5.68
1200 1212 5.537674 AGCTTGAGAACACAAATTCCAGAAT 59.462 36.000 0.00 0.00 0.00 2.40
1561 1580 4.624125 GCTACCCTATCATATCAACCTGGC 60.624 50.000 0.00 0.00 0.00 4.85
2148 2212 3.670625 TCCTTTCCTGTCAAATGTACCG 58.329 45.455 0.00 0.00 0.00 4.02
2338 2402 2.674852 ACGAGCATGCATACAACTTGAG 59.325 45.455 21.98 0.00 0.00 3.02
2419 2589 9.593134 AAAAACTTTGCAAGTGTTATGAACATA 57.407 25.926 16.57 0.00 44.35 2.29
2420 2590 8.491331 AAAAACTTTGCAAGTGTTATGAACAT 57.509 26.923 16.57 0.00 44.35 2.71
2421 2591 7.816995 AGAAAAACTTTGCAAGTGTTATGAACA 59.183 29.630 16.57 0.00 41.91 3.18
2422 2592 8.185003 AGAAAAACTTTGCAAGTGTTATGAAC 57.815 30.769 16.57 9.38 41.91 3.18
2423 2593 8.655092 CAAGAAAAACTTTGCAAGTGTTATGAA 58.345 29.630 16.57 0.00 41.91 2.57
2424 2594 7.816995 ACAAGAAAAACTTTGCAAGTGTTATGA 59.183 29.630 16.57 0.00 41.91 2.15
2425 2595 7.899330 CACAAGAAAAACTTTGCAAGTGTTATG 59.101 33.333 16.57 12.06 41.91 1.90
2426 2596 7.602265 ACACAAGAAAAACTTTGCAAGTGTTAT 59.398 29.630 16.57 10.85 41.91 1.89
2427 2597 6.926272 ACACAAGAAAAACTTTGCAAGTGTTA 59.074 30.769 16.57 0.00 41.91 2.41
2428 2598 5.757808 ACACAAGAAAAACTTTGCAAGTGTT 59.242 32.000 12.25 12.25 41.91 3.32
2429 2599 5.177327 CACACAAGAAAAACTTTGCAAGTGT 59.823 36.000 0.00 3.60 41.91 3.55
2430 2600 5.404968 TCACACAAGAAAAACTTTGCAAGTG 59.595 36.000 0.00 2.93 41.91 3.16
2431 2601 5.537188 TCACACAAGAAAAACTTTGCAAGT 58.463 33.333 0.00 0.00 45.46 3.16
2432 2602 6.073873 TGTTCACACAAGAAAAACTTTGCAAG 60.074 34.615 0.00 0.00 36.61 4.01
2433 2603 5.755375 TGTTCACACAAGAAAAACTTTGCAA 59.245 32.000 0.00 0.00 36.61 4.08
2434 2604 5.292765 TGTTCACACAAGAAAAACTTTGCA 58.707 33.333 0.00 0.00 36.61 4.08
2435 2605 5.163963 CCTGTTCACACAAGAAAAACTTTGC 60.164 40.000 0.00 0.00 36.61 3.68
2436 2606 5.163963 GCCTGTTCACACAAGAAAAACTTTG 60.164 40.000 0.00 0.00 36.61 2.77
2437 2607 4.929211 GCCTGTTCACACAAGAAAAACTTT 59.071 37.500 0.00 0.00 36.61 2.66
2438 2608 4.021544 TGCCTGTTCACACAAGAAAAACTT 60.022 37.500 0.00 0.00 39.70 2.66
2439 2609 3.509575 TGCCTGTTCACACAAGAAAAACT 59.490 39.130 0.00 0.00 30.36 2.66
2440 2610 3.612423 GTGCCTGTTCACACAAGAAAAAC 59.388 43.478 0.00 0.00 36.77 2.43
2500 2670 1.450312 CTCTAGCCCACCGCCAAAG 60.450 63.158 0.00 0.00 38.78 2.77
2566 2736 2.217750 TGTATGAAACTTGCGCACTGT 58.782 42.857 11.12 9.89 0.00 3.55
2573 2743 9.937175 GGTTTCTATAAGATGTATGAAACTTGC 57.063 33.333 13.55 0.00 41.39 4.01
2876 3046 5.902613 TTTAGGATGCAATTCCTCACTTG 57.097 39.130 12.22 0.00 42.71 3.16
2932 3102 7.966812 ACCAGTTCAGATATGACATGCTATTA 58.033 34.615 0.00 0.00 0.00 0.98
2980 3150 5.066117 ACAGCTGAAGCATATCATTTCACTG 59.934 40.000 23.35 13.75 45.16 3.66
3193 3367 8.407064 TGCCGATTCTTCTAAAAAGTGTTAAAA 58.593 29.630 0.00 0.00 0.00 1.52
3270 3446 2.911484 AGAGCCTTTTGATAAGCCTCG 58.089 47.619 0.00 0.00 0.00 4.63
3344 3521 7.036829 CCACAATCATATCAAATGAAGCACAA 58.963 34.615 0.00 0.00 0.00 3.33
3383 3561 3.391965 GCAGATGGTCACAAATTTGCAA 58.608 40.909 18.12 0.00 0.00 4.08
3476 3654 9.509855 CTATTATCAGAACATCTAGAATACCGC 57.490 37.037 0.00 0.00 0.00 5.68
3561 3740 1.006162 AGAGGACAGGTCTACCTCCAC 59.994 57.143 0.00 4.13 46.65 4.02
3779 3958 2.443255 ACCCAGACACATTCTTCAGGTT 59.557 45.455 0.00 0.00 28.95 3.50
3780 3959 2.057922 ACCCAGACACATTCTTCAGGT 58.942 47.619 0.00 0.00 28.96 4.00
3800 3995 8.562052 CACATACATCTGCAAATAATCTAGCAA 58.438 33.333 0.00 0.00 36.44 3.91
3904 4108 1.651240 CCAAACCGCAGCATCTCCAG 61.651 60.000 0.00 0.00 0.00 3.86
4001 4205 4.627900 CGGAGAGAGTAGAAAAGAAAAGGC 59.372 45.833 0.00 0.00 0.00 4.35
4082 4373 6.154021 GGTGAATCCACACTCTAAAGTAGGTA 59.846 42.308 0.00 0.00 44.93 3.08
4087 4378 3.650942 TGGGTGAATCCACACTCTAAAGT 59.349 43.478 0.00 0.00 46.66 2.66
4090 4381 4.927267 AATGGGTGAATCCACACTCTAA 57.073 40.909 0.00 0.00 46.66 2.10
4093 4384 5.010282 AGTAAAATGGGTGAATCCACACTC 58.990 41.667 0.00 0.00 46.66 3.51
4096 4387 4.770010 GGAAGTAAAATGGGTGAATCCACA 59.230 41.667 0.00 0.00 44.93 4.17
4099 4390 6.833933 ACATAGGAAGTAAAATGGGTGAATCC 59.166 38.462 0.00 0.00 0.00 3.01
4100 4391 7.881775 ACATAGGAAGTAAAATGGGTGAATC 57.118 36.000 0.00 0.00 0.00 2.52
4149 4440 9.257651 GGTATGCTCTGTTCGTAAATATAAGTT 57.742 33.333 0.00 0.00 0.00 2.66
4151 4442 8.916654 CAGGTATGCTCTGTTCGTAAATATAAG 58.083 37.037 0.00 0.00 0.00 1.73
4170 4461 0.676466 TGCTTGTTCCGGCAGGTATG 60.676 55.000 1.81 0.00 39.05 2.39
4171 4462 0.676782 GTGCTTGTTCCGGCAGGTAT 60.677 55.000 1.81 0.00 39.22 2.73
4173 4464 2.594592 GTGCTTGTTCCGGCAGGT 60.595 61.111 1.81 0.00 39.22 4.00
4175 4466 4.389576 GCGTGCTTGTTCCGGCAG 62.390 66.667 0.00 0.00 39.22 4.85
4210 6289 2.840199 ACAGGGTTGCTCTGTCTGA 58.160 52.632 0.00 0.00 41.10 3.27
4279 6392 0.804989 GACGATTTGACAAGCCAGGG 59.195 55.000 0.00 0.00 0.00 4.45
4280 6393 1.522668 TGACGATTTGACAAGCCAGG 58.477 50.000 0.00 0.00 0.00 4.45
4281 6394 2.159476 CCATGACGATTTGACAAGCCAG 60.159 50.000 0.00 0.00 0.00 4.85
4316 6429 2.587522 GAGGTTTTGCTTCTCTTGGGT 58.412 47.619 0.00 0.00 0.00 4.51
4332 6445 4.270153 TGGAGCCTGTGGGGAGGT 62.270 66.667 0.00 0.00 37.23 3.85
4427 6540 1.601171 CTGTGGGGAGGCTCTTCTG 59.399 63.158 15.23 3.43 0.00 3.02
4462 6575 1.385528 ACCGCCGAATATGGGAAAAC 58.614 50.000 0.00 0.00 0.00 2.43
4470 6583 0.951558 GCATTGGAACCGCCGAATAT 59.048 50.000 0.00 0.00 40.66 1.28
4539 6659 2.932622 GCGAGCTCTTGACATGAAGGAA 60.933 50.000 12.85 0.00 0.00 3.36
4571 6691 2.858646 GCGCGCTCTTTTTCTTTTTCCT 60.859 45.455 26.67 0.00 0.00 3.36
4572 6692 1.452025 GCGCGCTCTTTTTCTTTTTCC 59.548 47.619 26.67 0.00 0.00 3.13
4573 6693 1.452025 GGCGCGCTCTTTTTCTTTTTC 59.548 47.619 32.29 4.57 0.00 2.29
4574 6694 1.067060 AGGCGCGCTCTTTTTCTTTTT 59.933 42.857 32.29 0.00 0.00 1.94
4575 6695 0.668535 AGGCGCGCTCTTTTTCTTTT 59.331 45.000 32.29 0.00 0.00 2.27
4576 6696 0.040067 CAGGCGCGCTCTTTTTCTTT 60.040 50.000 32.29 0.00 0.00 2.52
4577 6697 0.884704 TCAGGCGCGCTCTTTTTCTT 60.885 50.000 32.29 0.09 0.00 2.52
4578 6698 0.884704 TTCAGGCGCGCTCTTTTTCT 60.885 50.000 32.29 14.85 0.00 2.52
4579 6699 0.040425 TTTCAGGCGCGCTCTTTTTC 60.040 50.000 32.29 12.47 0.00 2.29
4580 6700 0.040067 CTTTCAGGCGCGCTCTTTTT 60.040 50.000 32.29 6.99 0.00 1.94
4581 6701 0.884704 TCTTTCAGGCGCGCTCTTTT 60.885 50.000 32.29 8.90 0.00 2.27
4582 6702 1.294659 CTCTTTCAGGCGCGCTCTTT 61.295 55.000 32.29 11.60 0.00 2.52
4583 6703 1.739562 CTCTTTCAGGCGCGCTCTT 60.740 57.895 32.29 14.35 0.00 2.85
4584 6704 2.125753 CTCTTTCAGGCGCGCTCT 60.126 61.111 32.29 22.91 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.