Multiple sequence alignment - TraesCS6B01G281100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G281100 chr6B 100.000 3813 0 0 1 3813 507466838 507470650 0.000000e+00 7042.0
1 TraesCS6B01G281100 chr6B 98.480 329 5 0 1 329 672494321 672493993 7.100000e-162 580.0
2 TraesCS6B01G281100 chr6A 93.864 2901 124 22 946 3813 454681707 454678828 0.000000e+00 4322.0
3 TraesCS6B01G281100 chr6A 92.511 227 10 5 408 629 454682510 454682286 6.150000e-83 318.0
4 TraesCS6B01G281100 chr6D 92.304 2248 87 37 660 2832 317083060 317080824 0.000000e+00 3114.0
5 TraesCS6B01G281100 chr6D 96.757 925 26 3 2892 3813 317080714 317079791 0.000000e+00 1539.0
6 TraesCS6B01G281100 chr6D 93.688 301 14 2 331 627 317083361 317083062 2.700000e-121 446.0
7 TraesCS6B01G281100 chr3A 99.387 326 2 0 1 326 707924014 707924339 3.280000e-165 592.0
8 TraesCS6B01G281100 chr4D 98.784 329 4 0 1 329 475120793 475120465 1.530000e-163 586.0
9 TraesCS6B01G281100 chr7B 98.551 276 4 0 1 276 732704712 732704437 4.430000e-134 488.0
10 TraesCS6B01G281100 chr5D 89.375 320 19 2 7 326 343164518 343164822 4.620000e-104 388.0
11 TraesCS6B01G281100 chr5D 99.371 159 1 0 168 326 36760590 36760748 4.820000e-74 289.0
12 TraesCS6B01G281100 chr1A 98.684 152 2 0 175 326 261748656 261748505 1.750000e-68 270.0
13 TraesCS6B01G281100 chr4A 99.281 139 1 0 188 326 603492926 603493064 6.320000e-63 252.0
14 TraesCS6B01G281100 chr2B 87.742 155 16 1 175 326 785610752 785610598 1.090000e-40 178.0
15 TraesCS6B01G281100 chr7A 86.747 83 5 4 521 598 673830402 673830321 1.890000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G281100 chr6B 507466838 507470650 3812 False 7042.000000 7042 100.000000 1 3813 1 chr6B.!!$F1 3812
1 TraesCS6B01G281100 chr6A 454678828 454682510 3682 True 2320.000000 4322 93.187500 408 3813 2 chr6A.!!$R1 3405
2 TraesCS6B01G281100 chr6D 317079791 317083361 3570 True 1699.666667 3114 94.249667 331 3813 3 chr6D.!!$R1 3482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.038892 ACGCCAGCAGCTTTGAATTG 60.039 50.0 0.00 0.00 40.39 2.32 F
1493 1833 0.035458 AAACTCCTCGAGGCCAACAG 59.965 55.0 27.39 19.92 33.35 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1571 1911 0.660488 TGAATGTTCCACACGTGCAC 59.340 50.0 17.22 6.82 0.00 4.57 R
3009 3447 0.235926 GGCAGTTTGAGACGCAAGAC 59.764 55.0 0.00 0.00 37.87 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.574780 CGAAGCCCCGTTTTCTCC 58.425 61.111 0.00 0.00 0.00 3.71
35 36 2.388232 CGAAGCCCCGTTTTCTCCG 61.388 63.158 0.00 0.00 0.00 4.63
36 37 1.302271 GAAGCCCCGTTTTCTCCGT 60.302 57.895 0.00 0.00 0.00 4.69
37 38 1.296755 GAAGCCCCGTTTTCTCCGTC 61.297 60.000 0.00 0.00 0.00 4.79
38 39 1.765597 AAGCCCCGTTTTCTCCGTCT 61.766 55.000 0.00 0.00 0.00 4.18
39 40 1.302271 GCCCCGTTTTCTCCGTCTT 60.302 57.895 0.00 0.00 0.00 3.01
40 41 1.296755 GCCCCGTTTTCTCCGTCTTC 61.297 60.000 0.00 0.00 0.00 2.87
41 42 1.012486 CCCCGTTTTCTCCGTCTTCG 61.012 60.000 0.00 0.00 0.00 3.79
77 78 3.716006 CAAGCTGTCGCGTGGGTG 61.716 66.667 5.77 0.00 41.15 4.61
78 79 4.988598 AAGCTGTCGCGTGGGTGG 62.989 66.667 5.77 0.00 42.32 4.61
113 114 3.816920 CGCTCGCGTCTGTTCGTG 61.817 66.667 5.77 0.00 41.75 4.35
114 115 4.122515 GCTCGCGTCTGTTCGTGC 62.123 66.667 5.77 0.00 40.47 5.34
115 116 2.429236 CTCGCGTCTGTTCGTGCT 60.429 61.111 5.77 0.00 40.47 4.40
116 117 2.016704 CTCGCGTCTGTTCGTGCTT 61.017 57.895 5.77 0.00 40.47 3.91
117 118 1.935065 CTCGCGTCTGTTCGTGCTTC 61.935 60.000 5.77 0.00 40.47 3.86
118 119 2.016704 CGCGTCTGTTCGTGCTTCT 61.017 57.895 0.00 0.00 34.73 2.85
119 120 1.488957 GCGTCTGTTCGTGCTTCTG 59.511 57.895 0.00 0.00 0.00 3.02
120 121 1.488957 CGTCTGTTCGTGCTTCTGC 59.511 57.895 0.00 0.00 40.20 4.26
121 122 1.488957 GTCTGTTCGTGCTTCTGCG 59.511 57.895 0.00 0.00 43.34 5.18
122 123 1.664649 TCTGTTCGTGCTTCTGCGG 60.665 57.895 0.00 0.00 43.34 5.69
123 124 2.664851 TGTTCGTGCTTCTGCGGG 60.665 61.111 0.00 0.00 43.34 6.13
124 125 3.423154 GTTCGTGCTTCTGCGGGG 61.423 66.667 0.00 0.00 43.34 5.73
125 126 3.936203 TTCGTGCTTCTGCGGGGT 61.936 61.111 0.00 0.00 43.34 4.95
126 127 4.680237 TCGTGCTTCTGCGGGGTG 62.680 66.667 0.00 0.00 43.34 4.61
128 129 4.329545 GTGCTTCTGCGGGGTGGA 62.330 66.667 0.00 0.00 43.34 4.02
129 130 4.020617 TGCTTCTGCGGGGTGGAG 62.021 66.667 0.00 0.00 43.34 3.86
130 131 4.021925 GCTTCTGCGGGGTGGAGT 62.022 66.667 0.00 0.00 37.31 3.85
131 132 2.656069 GCTTCTGCGGGGTGGAGTA 61.656 63.158 0.00 0.00 37.31 2.59
132 133 1.218316 CTTCTGCGGGGTGGAGTAC 59.782 63.158 0.00 0.00 37.31 2.73
133 134 1.229082 TTCTGCGGGGTGGAGTACT 60.229 57.895 0.00 0.00 37.31 2.73
134 135 0.040058 TTCTGCGGGGTGGAGTACTA 59.960 55.000 0.00 0.00 37.31 1.82
135 136 0.395311 TCTGCGGGGTGGAGTACTAG 60.395 60.000 0.00 0.00 37.31 2.57
136 137 0.683504 CTGCGGGGTGGAGTACTAGT 60.684 60.000 0.00 0.00 0.00 2.57
137 138 0.625316 TGCGGGGTGGAGTACTAGTA 59.375 55.000 0.00 0.00 0.00 1.82
138 139 1.216175 TGCGGGGTGGAGTACTAGTAT 59.784 52.381 5.75 0.00 0.00 2.12
139 140 2.314246 GCGGGGTGGAGTACTAGTATT 58.686 52.381 5.75 0.94 0.00 1.89
140 141 2.035576 GCGGGGTGGAGTACTAGTATTG 59.964 54.545 5.75 0.00 0.00 1.90
141 142 2.035576 CGGGGTGGAGTACTAGTATTGC 59.964 54.545 5.75 7.93 0.00 3.56
142 143 2.035576 GGGGTGGAGTACTAGTATTGCG 59.964 54.545 5.75 0.00 0.00 4.85
143 144 2.035576 GGGTGGAGTACTAGTATTGCGG 59.964 54.545 5.75 0.00 0.00 5.69
144 145 2.035576 GGTGGAGTACTAGTATTGCGGG 59.964 54.545 5.75 0.00 0.00 6.13
145 146 2.035576 GTGGAGTACTAGTATTGCGGGG 59.964 54.545 5.75 0.00 0.00 5.73
146 147 2.314246 GGAGTACTAGTATTGCGGGGT 58.686 52.381 5.75 0.00 0.00 4.95
147 148 2.035576 GGAGTACTAGTATTGCGGGGTG 59.964 54.545 5.75 0.00 0.00 4.61
148 149 2.035576 GAGTACTAGTATTGCGGGGTGG 59.964 54.545 5.75 0.00 0.00 4.61
149 150 2.034124 GTACTAGTATTGCGGGGTGGA 58.966 52.381 5.75 0.00 0.00 4.02
150 151 1.575419 ACTAGTATTGCGGGGTGGAA 58.425 50.000 0.00 0.00 0.00 3.53
151 152 2.124411 ACTAGTATTGCGGGGTGGAAT 58.876 47.619 0.00 0.00 41.91 3.01
152 153 3.311091 ACTAGTATTGCGGGGTGGAATA 58.689 45.455 0.00 0.00 39.57 1.75
153 154 2.930826 AGTATTGCGGGGTGGAATAG 57.069 50.000 0.00 0.00 40.94 1.73
154 155 2.124411 AGTATTGCGGGGTGGAATAGT 58.876 47.619 0.00 0.00 40.94 2.12
155 156 3.311091 AGTATTGCGGGGTGGAATAGTA 58.689 45.455 0.00 0.00 41.22 1.82
156 157 3.908103 AGTATTGCGGGGTGGAATAGTAT 59.092 43.478 0.00 0.00 41.22 2.12
157 158 3.876309 ATTGCGGGGTGGAATAGTATT 57.124 42.857 0.00 0.00 36.79 1.89
158 159 4.986054 ATTGCGGGGTGGAATAGTATTA 57.014 40.909 0.00 0.00 36.79 0.98
159 160 4.345859 TTGCGGGGTGGAATAGTATTAG 57.654 45.455 0.00 0.00 0.00 1.73
160 161 3.311091 TGCGGGGTGGAATAGTATTAGT 58.689 45.455 0.00 0.00 0.00 2.24
161 162 4.482030 TGCGGGGTGGAATAGTATTAGTA 58.518 43.478 0.00 0.00 0.00 1.82
162 163 4.900652 TGCGGGGTGGAATAGTATTAGTAA 59.099 41.667 0.00 0.00 0.00 2.24
163 164 5.544948 TGCGGGGTGGAATAGTATTAGTAAT 59.455 40.000 0.17 0.17 0.00 1.89
164 165 6.725369 TGCGGGGTGGAATAGTATTAGTAATA 59.275 38.462 0.00 0.00 0.00 0.98
165 166 7.093640 TGCGGGGTGGAATAGTATTAGTAATAG 60.094 40.741 2.71 0.00 0.00 1.73
166 167 7.263496 CGGGGTGGAATAGTATTAGTAATAGC 58.737 42.308 2.71 0.00 0.00 2.97
167 168 7.563020 GGGGTGGAATAGTATTAGTAATAGCC 58.437 42.308 2.71 1.02 0.00 3.93
168 169 7.365384 GGGGTGGAATAGTATTAGTAATAGCCC 60.365 44.444 2.71 6.25 34.34 5.19
169 170 7.181485 GGGTGGAATAGTATTAGTAATAGCCCA 59.819 40.741 2.71 4.35 0.00 5.36
170 171 8.769359 GGTGGAATAGTATTAGTAATAGCCCAT 58.231 37.037 2.71 0.00 0.00 4.00
171 172 9.819267 GTGGAATAGTATTAGTAATAGCCCATC 57.181 37.037 2.71 0.07 0.00 3.51
172 173 9.784376 TGGAATAGTATTAGTAATAGCCCATCT 57.216 33.333 2.71 0.00 0.00 2.90
174 175 9.535878 GAATAGTATTAGTAATAGCCCATCTGC 57.464 37.037 2.71 0.00 0.00 4.26
175 176 6.935240 AGTATTAGTAATAGCCCATCTGCA 57.065 37.500 2.71 0.00 0.00 4.41
176 177 7.502060 AGTATTAGTAATAGCCCATCTGCAT 57.498 36.000 2.71 0.00 0.00 3.96
177 178 7.334090 AGTATTAGTAATAGCCCATCTGCATG 58.666 38.462 2.71 0.00 0.00 4.06
178 179 2.787994 AGTAATAGCCCATCTGCATGC 58.212 47.619 11.82 11.82 0.00 4.06
179 180 2.107031 AGTAATAGCCCATCTGCATGCA 59.893 45.455 21.29 21.29 0.00 3.96
180 181 2.076207 AATAGCCCATCTGCATGCAA 57.924 45.000 22.88 13.05 0.00 4.08
181 182 1.617322 ATAGCCCATCTGCATGCAAG 58.383 50.000 22.88 15.46 0.00 4.01
182 183 1.105167 TAGCCCATCTGCATGCAAGC 61.105 55.000 22.88 18.02 0.00 4.01
183 184 2.423898 GCCCATCTGCATGCAAGCT 61.424 57.895 22.88 6.16 34.99 3.74
184 185 1.105167 GCCCATCTGCATGCAAGCTA 61.105 55.000 22.88 7.97 34.99 3.32
185 186 1.617322 CCCATCTGCATGCAAGCTAT 58.383 50.000 22.88 9.99 34.99 2.97
186 187 2.786777 CCCATCTGCATGCAAGCTATA 58.213 47.619 22.88 3.52 34.99 1.31
187 188 2.486982 CCCATCTGCATGCAAGCTATAC 59.513 50.000 22.88 0.00 34.99 1.47
188 189 2.159037 CCATCTGCATGCAAGCTATACG 59.841 50.000 22.88 7.42 34.99 3.06
189 190 1.220529 TCTGCATGCAAGCTATACGC 58.779 50.000 22.88 0.00 39.57 4.42
190 191 0.236711 CTGCATGCAAGCTATACGCC 59.763 55.000 22.88 0.00 40.39 5.68
191 192 0.463474 TGCATGCAAGCTATACGCCA 60.463 50.000 20.30 0.00 40.39 5.69
192 193 0.236711 GCATGCAAGCTATACGCCAG 59.763 55.000 14.21 0.00 40.39 4.85
193 194 0.236711 CATGCAAGCTATACGCCAGC 59.763 55.000 0.00 0.00 40.39 4.85
194 195 1.220477 TGCAAGCTATACGCCAGCA 59.780 52.632 6.31 0.00 43.72 4.41
195 196 0.811219 TGCAAGCTATACGCCAGCAG 60.811 55.000 6.31 0.41 41.91 4.24
196 197 1.937391 CAAGCTATACGCCAGCAGC 59.063 57.895 6.31 0.00 41.66 5.25
197 198 0.531532 CAAGCTATACGCCAGCAGCT 60.532 55.000 6.31 0.00 46.05 4.24
198 199 0.179000 AAGCTATACGCCAGCAGCTT 59.821 50.000 8.63 8.63 46.69 3.74
199 200 0.179000 AGCTATACGCCAGCAGCTTT 59.821 50.000 0.00 0.00 41.50 3.51
200 201 0.305922 GCTATACGCCAGCAGCTTTG 59.694 55.000 0.00 0.00 40.39 2.77
201 202 1.939974 CTATACGCCAGCAGCTTTGA 58.060 50.000 0.00 0.00 40.39 2.69
202 203 2.279741 CTATACGCCAGCAGCTTTGAA 58.720 47.619 0.00 0.00 40.39 2.69
203 204 1.755179 ATACGCCAGCAGCTTTGAAT 58.245 45.000 0.00 0.00 40.39 2.57
204 205 1.533625 TACGCCAGCAGCTTTGAATT 58.466 45.000 0.00 0.00 40.39 2.17
205 206 0.038892 ACGCCAGCAGCTTTGAATTG 60.039 50.000 0.00 0.00 40.39 2.32
206 207 0.241749 CGCCAGCAGCTTTGAATTGA 59.758 50.000 0.00 0.00 40.39 2.57
207 208 1.135199 CGCCAGCAGCTTTGAATTGAT 60.135 47.619 0.00 0.00 40.39 2.57
208 209 2.673043 CGCCAGCAGCTTTGAATTGATT 60.673 45.455 0.00 0.00 40.39 2.57
209 210 2.671396 GCCAGCAGCTTTGAATTGATTG 59.329 45.455 0.00 0.00 38.99 2.67
210 211 2.671396 CCAGCAGCTTTGAATTGATTGC 59.329 45.455 0.00 0.00 0.00 3.56
211 212 2.344441 CAGCAGCTTTGAATTGATTGCG 59.656 45.455 0.00 0.00 35.38 4.85
212 213 1.060122 GCAGCTTTGAATTGATTGCGC 59.940 47.619 0.00 0.00 0.00 6.09
213 214 2.602878 CAGCTTTGAATTGATTGCGCT 58.397 42.857 9.73 0.00 0.00 5.92
214 215 2.991190 CAGCTTTGAATTGATTGCGCTT 59.009 40.909 9.73 0.00 0.00 4.68
215 216 3.430895 CAGCTTTGAATTGATTGCGCTTT 59.569 39.130 9.73 0.00 0.00 3.51
216 217 3.430895 AGCTTTGAATTGATTGCGCTTTG 59.569 39.130 9.73 0.00 0.00 2.77
217 218 3.423907 GCTTTGAATTGATTGCGCTTTGG 60.424 43.478 9.73 0.00 0.00 3.28
218 219 2.367030 TGAATTGATTGCGCTTTGGG 57.633 45.000 9.73 0.00 0.00 4.12
219 220 1.891811 TGAATTGATTGCGCTTTGGGA 59.108 42.857 9.73 0.00 0.00 4.37
220 221 2.298446 TGAATTGATTGCGCTTTGGGAA 59.702 40.909 9.73 0.00 0.00 3.97
221 222 2.660189 ATTGATTGCGCTTTGGGAAG 57.340 45.000 9.73 0.00 35.92 3.46
222 223 1.614996 TTGATTGCGCTTTGGGAAGA 58.385 45.000 9.73 0.00 34.71 2.87
223 224 0.881118 TGATTGCGCTTTGGGAAGAC 59.119 50.000 9.73 0.00 34.71 3.01
224 225 0.179189 GATTGCGCTTTGGGAAGACG 60.179 55.000 9.73 0.00 34.71 4.18
227 228 2.863153 CGCTTTGGGAAGACGCAG 59.137 61.111 0.00 0.00 39.93 5.18
228 229 2.563427 GCTTTGGGAAGACGCAGC 59.437 61.111 0.00 0.00 39.93 5.25
229 230 2.863153 CTTTGGGAAGACGCAGCG 59.137 61.111 14.82 14.82 39.93 5.18
230 231 3.314388 CTTTGGGAAGACGCAGCGC 62.314 63.158 16.61 8.00 39.93 5.92
234 235 3.491652 GGAAGACGCAGCGCCTTC 61.492 66.667 29.66 29.66 36.48 3.46
235 236 2.738521 GAAGACGCAGCGCCTTCA 60.739 61.111 31.65 0.00 37.02 3.02
236 237 3.016474 GAAGACGCAGCGCCTTCAC 62.016 63.158 31.65 12.12 37.02 3.18
237 238 3.521529 AAGACGCAGCGCCTTCACT 62.522 57.895 16.61 2.10 0.00 3.41
238 239 2.996168 AAGACGCAGCGCCTTCACTT 62.996 55.000 16.61 8.25 0.00 3.16
239 240 2.591715 ACGCAGCGCCTTCACTTT 60.592 55.556 16.61 0.00 0.00 2.66
240 241 2.117941 GACGCAGCGCCTTCACTTTT 62.118 55.000 16.61 0.00 0.00 2.27
241 242 1.008538 CGCAGCGCCTTCACTTTTT 60.009 52.632 2.29 0.00 0.00 1.94
242 243 1.270777 CGCAGCGCCTTCACTTTTTG 61.271 55.000 2.29 0.00 0.00 2.44
243 244 1.551503 GCAGCGCCTTCACTTTTTGC 61.552 55.000 2.29 0.00 0.00 3.68
244 245 0.248990 CAGCGCCTTCACTTTTTGCA 60.249 50.000 2.29 0.00 0.00 4.08
245 246 0.675633 AGCGCCTTCACTTTTTGCAT 59.324 45.000 2.29 0.00 0.00 3.96
246 247 0.785979 GCGCCTTCACTTTTTGCATG 59.214 50.000 0.00 0.00 0.00 4.06
247 248 1.421382 CGCCTTCACTTTTTGCATGG 58.579 50.000 0.00 0.00 0.00 3.66
248 249 1.150827 GCCTTCACTTTTTGCATGGC 58.849 50.000 0.00 0.00 0.00 4.40
249 250 1.421382 CCTTCACTTTTTGCATGGCG 58.579 50.000 0.00 0.00 0.00 5.69
250 251 0.785979 CTTCACTTTTTGCATGGCGC 59.214 50.000 0.00 0.00 42.89 6.53
251 252 0.599728 TTCACTTTTTGCATGGCGCC 60.600 50.000 22.73 22.73 41.33 6.53
252 253 2.028733 CACTTTTTGCATGGCGCCC 61.029 57.895 26.77 9.46 41.33 6.13
253 254 2.810458 CTTTTTGCATGGCGCCCG 60.810 61.111 26.77 16.90 41.33 6.13
254 255 3.279974 CTTTTTGCATGGCGCCCGA 62.280 57.895 26.77 6.41 41.33 5.14
255 256 3.279974 TTTTTGCATGGCGCCCGAG 62.280 57.895 26.77 14.98 41.33 4.63
273 274 3.827634 GGAGCGGCCCTGTAAATG 58.172 61.111 0.00 0.00 0.00 2.32
274 275 1.077716 GGAGCGGCCCTGTAAATGT 60.078 57.895 0.00 0.00 0.00 2.71
275 276 1.376609 GGAGCGGCCCTGTAAATGTG 61.377 60.000 0.00 0.00 0.00 3.21
276 277 1.376609 GAGCGGCCCTGTAAATGTGG 61.377 60.000 0.00 0.00 0.00 4.17
277 278 1.677633 GCGGCCCTGTAAATGTGGT 60.678 57.895 0.00 0.00 0.00 4.16
278 279 0.393267 GCGGCCCTGTAAATGTGGTA 60.393 55.000 0.00 0.00 0.00 3.25
279 280 1.375551 CGGCCCTGTAAATGTGGTAC 58.624 55.000 0.00 0.00 0.00 3.34
280 281 1.375551 GGCCCTGTAAATGTGGTACG 58.624 55.000 0.00 0.00 0.00 3.67
281 282 1.065998 GGCCCTGTAAATGTGGTACGA 60.066 52.381 0.00 0.00 0.00 3.43
282 283 2.277084 GCCCTGTAAATGTGGTACGAG 58.723 52.381 0.00 0.00 0.00 4.18
283 284 2.277084 CCCTGTAAATGTGGTACGAGC 58.723 52.381 0.00 0.00 0.00 5.03
284 285 1.924524 CCTGTAAATGTGGTACGAGCG 59.075 52.381 0.00 0.00 0.00 5.03
285 286 2.602878 CTGTAAATGTGGTACGAGCGT 58.397 47.619 0.00 0.00 0.00 5.07
286 287 2.330286 TGTAAATGTGGTACGAGCGTG 58.670 47.619 5.69 0.00 0.00 5.34
287 288 1.060122 GTAAATGTGGTACGAGCGTGC 59.940 52.381 5.69 4.00 0.00 5.34
288 289 1.623081 AAATGTGGTACGAGCGTGCG 61.623 55.000 5.69 0.00 37.29 5.34
289 290 3.982372 ATGTGGTACGAGCGTGCGG 62.982 63.158 5.69 0.00 35.12 5.69
315 316 3.254629 GGGACCTAAAAACCCGGAC 57.745 57.895 0.73 0.00 34.03 4.79
316 317 0.674581 GGGACCTAAAAACCCGGACG 60.675 60.000 0.73 0.00 34.03 4.79
317 318 0.674581 GGACCTAAAAACCCGGACGG 60.675 60.000 0.73 3.25 37.81 4.79
318 319 0.321346 GACCTAAAAACCCGGACGGA 59.679 55.000 13.13 0.00 37.50 4.69
319 320 0.322648 ACCTAAAAACCCGGACGGAG 59.677 55.000 13.13 5.04 37.50 4.63
320 321 0.392060 CCTAAAAACCCGGACGGAGG 60.392 60.000 13.13 5.93 37.50 4.30
321 322 0.322648 CTAAAAACCCGGACGGAGGT 59.677 55.000 13.13 0.00 38.27 3.85
322 323 1.550072 CTAAAAACCCGGACGGAGGTA 59.450 52.381 13.13 0.00 34.45 3.08
323 324 0.322648 AAAAACCCGGACGGAGGTAG 59.677 55.000 13.13 0.00 34.45 3.18
324 325 0.833409 AAAACCCGGACGGAGGTAGT 60.833 55.000 13.13 0.00 34.45 2.73
325 326 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.00 34.45 1.82
326 327 0.394899 AACCCGGACGGAGGTAGTAG 60.395 60.000 13.13 0.00 34.45 2.57
327 328 1.225704 CCCGGACGGAGGTAGTAGT 59.774 63.158 13.13 0.00 37.50 2.73
328 329 0.469917 CCCGGACGGAGGTAGTAGTA 59.530 60.000 13.13 0.00 37.50 1.82
329 330 1.542108 CCCGGACGGAGGTAGTAGTAG 60.542 61.905 13.13 0.00 37.50 2.57
334 335 3.181461 GGACGGAGGTAGTAGTAGCTACA 60.181 52.174 25.28 9.08 42.18 2.74
352 353 4.142315 GCTACACAAGAGTACATTACCCGA 60.142 45.833 0.00 0.00 0.00 5.14
366 367 3.522731 CCGAGAGTGGAGAGCCCG 61.523 72.222 0.00 0.00 37.93 6.13
378 379 0.693049 AGAGCCCGGATGTTCTTTGT 59.307 50.000 0.73 0.00 0.00 2.83
396 397 1.097547 GTGAGCCATGGCAATACGCT 61.098 55.000 37.18 16.13 44.88 5.07
465 466 0.109919 CGTACACAGCACTCGCACTA 60.110 55.000 0.00 0.00 42.27 2.74
466 467 1.467543 CGTACACAGCACTCGCACTAT 60.468 52.381 0.00 0.00 42.27 2.12
488 489 2.143122 GAACCGACACTGAATCAGCAA 58.857 47.619 10.62 0.00 34.37 3.91
492 493 3.569701 ACCGACACTGAATCAGCAAAAAT 59.430 39.130 10.62 0.00 34.37 1.82
625 634 2.240279 CAACCAAACCCCCGAAATACA 58.760 47.619 0.00 0.00 0.00 2.29
626 635 2.829120 CAACCAAACCCCCGAAATACAT 59.171 45.455 0.00 0.00 0.00 2.29
627 636 2.730382 ACCAAACCCCCGAAATACATC 58.270 47.619 0.00 0.00 0.00 3.06
628 637 2.028876 CCAAACCCCCGAAATACATCC 58.971 52.381 0.00 0.00 0.00 3.51
629 638 1.673920 CAAACCCCCGAAATACATCCG 59.326 52.381 0.00 0.00 0.00 4.18
630 639 1.205966 AACCCCCGAAATACATCCGA 58.794 50.000 0.00 0.00 0.00 4.55
631 640 1.205966 ACCCCCGAAATACATCCGAA 58.794 50.000 0.00 0.00 0.00 4.30
632 641 1.134310 ACCCCCGAAATACATCCGAAC 60.134 52.381 0.00 0.00 0.00 3.95
633 642 1.134340 CCCCCGAAATACATCCGAACA 60.134 52.381 0.00 0.00 0.00 3.18
634 643 2.486548 CCCCCGAAATACATCCGAACAT 60.487 50.000 0.00 0.00 0.00 2.71
635 644 3.211045 CCCCGAAATACATCCGAACATT 58.789 45.455 0.00 0.00 0.00 2.71
636 645 3.630312 CCCCGAAATACATCCGAACATTT 59.370 43.478 0.00 0.00 0.00 2.32
637 646 4.261031 CCCCGAAATACATCCGAACATTTC 60.261 45.833 0.00 0.00 35.17 2.17
638 647 4.261031 CCCGAAATACATCCGAACATTTCC 60.261 45.833 0.00 0.00 35.09 3.13
639 648 4.261031 CCGAAATACATCCGAACATTTCCC 60.261 45.833 0.00 0.00 35.09 3.97
640 649 4.574828 CGAAATACATCCGAACATTTCCCT 59.425 41.667 0.00 0.00 35.09 4.20
641 650 5.277345 CGAAATACATCCGAACATTTCCCTC 60.277 44.000 0.00 0.00 35.09 4.30
642 651 4.771114 ATACATCCGAACATTTCCCTCA 57.229 40.909 0.00 0.00 0.00 3.86
643 652 3.433306 ACATCCGAACATTTCCCTCAA 57.567 42.857 0.00 0.00 0.00 3.02
644 653 3.761897 ACATCCGAACATTTCCCTCAAA 58.238 40.909 0.00 0.00 0.00 2.69
645 654 4.148838 ACATCCGAACATTTCCCTCAAAA 58.851 39.130 0.00 0.00 0.00 2.44
646 655 4.586841 ACATCCGAACATTTCCCTCAAAAA 59.413 37.500 0.00 0.00 0.00 1.94
689 698 1.058903 CTAAACGCGCGCTCCTTTC 59.941 57.895 32.58 0.00 0.00 2.62
691 700 0.947180 TAAACGCGCGCTCCTTTCTT 60.947 50.000 32.58 11.38 0.00 2.52
692 701 2.171489 AAACGCGCGCTCCTTTCTTC 62.171 55.000 32.58 0.00 0.00 2.87
694 703 2.435059 GCGCGCTCCTTTCTTCCT 60.435 61.111 26.67 0.00 0.00 3.36
696 705 1.578206 GCGCGCTCCTTTCTTCCTTT 61.578 55.000 26.67 0.00 0.00 3.11
725 734 6.412362 TTCCTTAGCAGTATCATTCTCCTC 57.588 41.667 0.00 0.00 0.00 3.71
750 760 1.211190 CAGCTTTGCCTTTCGCCTC 59.789 57.895 0.00 0.00 36.24 4.70
756 766 1.981256 TTGCCTTTCGCCTCTCTTTT 58.019 45.000 0.00 0.00 36.24 2.27
761 771 2.146342 CTTTCGCCTCTCTTTTGCTGA 58.854 47.619 0.00 0.00 0.00 4.26
762 772 1.512926 TTCGCCTCTCTTTTGCTGAC 58.487 50.000 0.00 0.00 0.00 3.51
763 773 0.681733 TCGCCTCTCTTTTGCTGACT 59.318 50.000 0.00 0.00 0.00 3.41
764 774 0.795085 CGCCTCTCTTTTGCTGACTG 59.205 55.000 0.00 0.00 0.00 3.51
765 775 1.606480 CGCCTCTCTTTTGCTGACTGA 60.606 52.381 0.00 0.00 0.00 3.41
792 1077 0.945099 TCATAAACAACAACGCGCCA 59.055 45.000 5.73 0.00 0.00 5.69
809 1108 3.841758 ACCCCGCCGACCGATAAC 61.842 66.667 0.00 0.00 40.02 1.89
820 1119 0.324091 ACCGATAACCACGTCCCTCT 60.324 55.000 0.00 0.00 0.00 3.69
828 1131 1.433879 CACGTCCCTCTAGCCTTCG 59.566 63.158 0.00 0.00 0.00 3.79
833 1136 2.652590 GTCCCTCTAGCCTTCGACTAA 58.347 52.381 0.00 0.00 0.00 2.24
835 1138 1.334243 CCCTCTAGCCTTCGACTAACG 59.666 57.143 0.00 0.00 44.09 3.18
848 1151 2.344441 CGACTAACGCACAATACCACAG 59.656 50.000 0.00 0.00 34.51 3.66
863 1166 4.033990 ACCACAGCTATATATCGCGATG 57.966 45.455 31.05 15.81 0.00 3.84
870 1183 4.580995 AGCTATATATCGCGATGCCTACTT 59.419 41.667 31.05 5.78 0.00 2.24
874 1187 2.150397 ATCGCGATGCCTACTTAACC 57.850 50.000 23.04 0.00 0.00 2.85
890 1204 3.473647 CCTCCCGAGCTGCCATCA 61.474 66.667 0.00 0.00 0.00 3.07
891 1205 2.108566 CTCCCGAGCTGCCATCAG 59.891 66.667 0.00 0.00 43.16 2.90
892 1206 2.685017 TCCCGAGCTGCCATCAGT 60.685 61.111 0.00 0.00 42.29 3.41
893 1207 2.202987 CCCGAGCTGCCATCAGTC 60.203 66.667 0.00 0.00 42.29 3.51
894 1208 2.584418 CCGAGCTGCCATCAGTCG 60.584 66.667 0.00 0.00 42.29 4.18
908 1233 1.538075 TCAGTCGCGCCGATCATAATA 59.462 47.619 0.00 0.00 38.42 0.98
1100 1431 2.765807 CCGGCTCATGAGGGAGGT 60.766 66.667 23.89 0.00 35.41 3.85
1455 1795 2.364317 TTCCTCAGGGCTAGCGCT 60.364 61.111 27.23 27.23 39.92 5.92
1490 1830 1.183030 TCGAAACTCCTCGAGGCCAA 61.183 55.000 27.39 9.01 42.69 4.52
1493 1833 0.035458 AAACTCCTCGAGGCCAACAG 59.965 55.000 27.39 19.92 33.35 3.16
1536 1876 1.543065 CCTGCTGCCTGAGTGTCTCT 61.543 60.000 0.00 0.00 0.00 3.10
1538 1878 1.153862 GCTGCCTGAGTGTCTCTCG 60.154 63.158 0.00 0.00 45.46 4.04
1539 1879 1.153862 CTGCCTGAGTGTCTCTCGC 60.154 63.158 0.00 0.00 45.46 5.03
1540 1880 2.202544 GCCTGAGTGTCTCTCGCG 60.203 66.667 0.00 0.00 45.46 5.87
1541 1881 2.202544 CCTGAGTGTCTCTCGCGC 60.203 66.667 0.00 0.00 45.46 6.86
1542 1882 2.563427 CTGAGTGTCTCTCGCGCA 59.437 61.111 8.75 0.00 45.46 6.09
1543 1883 1.799519 CTGAGTGTCTCTCGCGCAC 60.800 63.158 8.75 2.97 45.46 5.34
1544 1884 2.193865 CTGAGTGTCTCTCGCGCACT 62.194 60.000 14.82 14.82 45.46 4.40
1545 1885 2.563942 AGTGTCTCTCGCGCACTC 59.436 61.111 8.75 0.00 38.96 3.51
1546 1886 2.505118 GTGTCTCTCGCGCACTCC 60.505 66.667 8.75 0.00 0.00 3.85
1547 1887 3.749064 TGTCTCTCGCGCACTCCC 61.749 66.667 8.75 0.00 0.00 4.30
1548 1888 4.500116 GTCTCTCGCGCACTCCCC 62.500 72.222 8.75 0.00 0.00 4.81
1549 1889 4.742649 TCTCTCGCGCACTCCCCT 62.743 66.667 8.75 0.00 0.00 4.79
1550 1890 4.200283 CTCTCGCGCACTCCCCTC 62.200 72.222 8.75 0.00 0.00 4.30
1565 1905 2.435586 CTCCGCCTCCACTTGCTG 60.436 66.667 0.00 0.00 0.00 4.41
1566 1906 4.704833 TCCGCCTCCACTTGCTGC 62.705 66.667 0.00 0.00 0.00 5.25
1632 2008 4.142315 GCATGTGAAATATTCTGCAGGTGT 60.142 41.667 15.13 2.70 31.10 4.16
1666 2042 2.048877 GGCGTGCTTTGCTGCATT 60.049 55.556 1.84 0.00 45.23 3.56
1667 2043 1.665599 GGCGTGCTTTGCTGCATTT 60.666 52.632 1.84 0.00 45.23 2.32
1668 2044 1.620413 GGCGTGCTTTGCTGCATTTC 61.620 55.000 1.84 0.00 45.23 2.17
1669 2045 1.937196 GCGTGCTTTGCTGCATTTCG 61.937 55.000 1.84 6.06 45.23 3.46
1670 2046 0.661187 CGTGCTTTGCTGCATTTCGT 60.661 50.000 1.84 0.00 45.23 3.85
1671 2047 1.055338 GTGCTTTGCTGCATTTCGTC 58.945 50.000 1.84 0.00 45.23 4.20
1672 2048 0.385849 TGCTTTGCTGCATTTCGTCG 60.386 50.000 1.84 0.00 38.12 5.12
1673 2049 0.385974 GCTTTGCTGCATTTCGTCGT 60.386 50.000 1.84 0.00 0.00 4.34
1674 2050 1.595609 CTTTGCTGCATTTCGTCGTC 58.404 50.000 1.84 0.00 0.00 4.20
1795 2180 3.391296 AGAAGCTGTACAAGGAGGTGAAA 59.609 43.478 0.00 0.00 0.00 2.69
1835 2220 1.618343 TCCATCACGACAAGAAGCTGA 59.382 47.619 0.00 0.00 0.00 4.26
2563 2951 2.592308 GGGAGGCACTGGATGGAC 59.408 66.667 0.00 0.00 41.55 4.02
2575 2963 1.153647 GATGGACCACGACATGCGA 60.154 57.895 14.88 0.00 44.57 5.10
2794 3182 2.738521 GACGCGGTGTGCAGACAT 60.739 61.111 16.68 0.00 46.97 3.06
2824 3212 1.920574 GTGCACTAGTCGCATACAGTG 59.079 52.381 18.61 11.24 42.32 3.66
2844 3270 4.394920 AGTGCATACTACGTTCATTTTGGG 59.605 41.667 0.00 0.00 34.74 4.12
2847 3273 4.035208 GCATACTACGTTCATTTTGGGGAG 59.965 45.833 0.00 0.00 0.00 4.30
2853 3279 4.407365 ACGTTCATTTTGGGGAGATTTCT 58.593 39.130 0.00 0.00 0.00 2.52
2860 3286 8.899887 TCATTTTGGGGAGATTTCTTTTCTAT 57.100 30.769 0.00 0.00 0.00 1.98
2863 3289 7.859325 TTTGGGGAGATTTCTTTTCTATACG 57.141 36.000 0.00 0.00 0.00 3.06
2885 3316 5.479375 ACGTAAGATGGAAGTTCTTGTAGGA 59.521 40.000 2.25 0.00 43.62 2.94
2890 3321 7.929941 AGATGGAAGTTCTTGTAGGATTTTC 57.070 36.000 2.25 0.00 0.00 2.29
2900 3338 9.965824 GTTCTTGTAGGATTTTCAAAGAAATGA 57.034 29.630 0.00 0.00 29.75 2.57
2903 3341 9.617975 CTTGTAGGATTTTCAAAGAAATGAGAC 57.382 33.333 0.00 0.00 29.75 3.36
2953 3391 7.754924 GTGACTTCTTTTTCATGACTGTTTCAA 59.245 33.333 0.00 0.00 37.92 2.69
2990 3428 9.743057 TGGCATAACTATAATTTGTGTATTTGC 57.257 29.630 0.00 0.00 0.00 3.68
2991 3429 9.191995 GGCATAACTATAATTTGTGTATTTGCC 57.808 33.333 0.00 0.00 0.00 4.52
3009 3447 4.336889 TGCCTAGAAATGTATTCCCTCG 57.663 45.455 0.00 0.00 0.00 4.63
3020 3458 0.173708 ATTCCCTCGTCTTGCGTCTC 59.826 55.000 0.00 0.00 42.13 3.36
3023 3461 0.319555 CCCTCGTCTTGCGTCTCAAA 60.320 55.000 0.00 0.00 42.13 2.69
3039 3477 2.019337 AAACTGCCGTCGGTTTGAC 58.981 52.632 13.94 0.00 46.80 3.18
3152 3594 7.682021 GCCAGAAGACAAAGACATAACTTTTGT 60.682 37.037 1.86 1.86 37.91 2.83
3153 3595 7.645340 CCAGAAGACAAAGACATAACTTTTGTG 59.355 37.037 6.56 0.00 37.91 3.33
3327 3770 4.773013 TGAAGTTCAACGAGTTAGGGTTT 58.227 39.130 2.20 0.00 0.00 3.27
3643 4091 9.736023 AGAAAAAGCAACATAATATCGGAAATC 57.264 29.630 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.687805 GGAGAAAACGGGGCTTCGC 61.688 63.158 0.00 0.00 0.00 4.70
17 18 2.388232 CGGAGAAAACGGGGCTTCG 61.388 63.158 0.00 0.00 0.00 3.79
18 19 1.296755 GACGGAGAAAACGGGGCTTC 61.297 60.000 0.00 0.00 35.23 3.86
19 20 1.302271 GACGGAGAAAACGGGGCTT 60.302 57.895 0.00 0.00 35.23 4.35
20 21 1.765597 AAGACGGAGAAAACGGGGCT 61.766 55.000 0.00 0.00 35.23 5.19
21 22 1.296755 GAAGACGGAGAAAACGGGGC 61.297 60.000 0.00 0.00 35.23 5.80
22 23 1.012486 CGAAGACGGAGAAAACGGGG 61.012 60.000 0.00 0.00 35.72 5.73
23 24 2.442084 CGAAGACGGAGAAAACGGG 58.558 57.895 0.00 0.00 35.72 5.28
60 61 3.716006 CACCCACGCGACAGCTTG 61.716 66.667 15.93 0.00 41.65 4.01
61 62 4.988598 CCACCCACGCGACAGCTT 62.989 66.667 15.93 0.00 42.32 3.74
89 90 4.180946 AGACGCGAGCGCTACCAG 62.181 66.667 15.93 4.84 44.19 4.00
90 91 4.476410 CAGACGCGAGCGCTACCA 62.476 66.667 15.93 0.00 44.19 3.25
91 92 3.966026 AACAGACGCGAGCGCTACC 62.966 63.158 15.93 2.72 44.19 3.18
92 93 2.497928 GAACAGACGCGAGCGCTAC 61.498 63.158 15.93 4.52 44.19 3.58
93 94 2.202440 GAACAGACGCGAGCGCTA 60.202 61.111 15.93 0.00 44.19 4.26
96 97 3.816920 CACGAACAGACGCGAGCG 61.817 66.667 15.93 16.38 46.03 5.03
97 98 4.122515 GCACGAACAGACGCGAGC 62.123 66.667 15.93 3.96 37.00 5.03
98 99 1.935065 GAAGCACGAACAGACGCGAG 61.935 60.000 15.93 4.52 36.70 5.03
99 100 2.014554 GAAGCACGAACAGACGCGA 61.015 57.895 15.93 0.00 36.70 5.87
100 101 2.016704 AGAAGCACGAACAGACGCG 61.017 57.895 3.53 3.53 36.70 6.01
101 102 1.488957 CAGAAGCACGAACAGACGC 59.511 57.895 0.00 0.00 36.70 5.19
102 103 1.488957 GCAGAAGCACGAACAGACG 59.511 57.895 0.00 0.00 41.58 4.18
103 104 1.488957 CGCAGAAGCACGAACAGAC 59.511 57.895 0.00 0.00 42.27 3.51
104 105 1.664649 CCGCAGAAGCACGAACAGA 60.665 57.895 0.00 0.00 42.27 3.41
105 106 2.671177 CCCGCAGAAGCACGAACAG 61.671 63.158 0.00 0.00 42.27 3.16
106 107 2.664851 CCCGCAGAAGCACGAACA 60.665 61.111 0.00 0.00 42.27 3.18
107 108 3.423154 CCCCGCAGAAGCACGAAC 61.423 66.667 0.00 0.00 42.27 3.95
108 109 3.936203 ACCCCGCAGAAGCACGAA 61.936 61.111 0.00 0.00 42.27 3.85
109 110 4.680237 CACCCCGCAGAAGCACGA 62.680 66.667 0.00 0.00 42.27 4.35
111 112 4.329545 TCCACCCCGCAGAAGCAC 62.330 66.667 0.00 0.00 42.27 4.40
112 113 4.020617 CTCCACCCCGCAGAAGCA 62.021 66.667 0.00 0.00 42.27 3.91
113 114 2.656069 TACTCCACCCCGCAGAAGC 61.656 63.158 0.00 0.00 37.42 3.86
114 115 1.218316 GTACTCCACCCCGCAGAAG 59.782 63.158 0.00 0.00 0.00 2.85
115 116 0.040058 TAGTACTCCACCCCGCAGAA 59.960 55.000 0.00 0.00 0.00 3.02
116 117 0.395311 CTAGTACTCCACCCCGCAGA 60.395 60.000 0.00 0.00 0.00 4.26
117 118 0.683504 ACTAGTACTCCACCCCGCAG 60.684 60.000 0.00 0.00 0.00 5.18
118 119 0.625316 TACTAGTACTCCACCCCGCA 59.375 55.000 0.00 0.00 0.00 5.69
119 120 1.992538 ATACTAGTACTCCACCCCGC 58.007 55.000 4.31 0.00 0.00 6.13
120 121 2.035576 GCAATACTAGTACTCCACCCCG 59.964 54.545 4.31 0.00 0.00 5.73
121 122 2.035576 CGCAATACTAGTACTCCACCCC 59.964 54.545 4.31 0.00 0.00 4.95
122 123 2.035576 CCGCAATACTAGTACTCCACCC 59.964 54.545 4.31 0.00 0.00 4.61
123 124 2.035576 CCCGCAATACTAGTACTCCACC 59.964 54.545 4.31 0.00 0.00 4.61
124 125 2.035576 CCCCGCAATACTAGTACTCCAC 59.964 54.545 4.31 0.00 0.00 4.02
125 126 2.313317 CCCCGCAATACTAGTACTCCA 58.687 52.381 4.31 0.00 0.00 3.86
126 127 2.035576 CACCCCGCAATACTAGTACTCC 59.964 54.545 4.31 0.00 0.00 3.85
127 128 2.035576 CCACCCCGCAATACTAGTACTC 59.964 54.545 4.31 0.00 0.00 2.59
128 129 2.037144 CCACCCCGCAATACTAGTACT 58.963 52.381 4.31 0.00 0.00 2.73
129 130 2.034124 TCCACCCCGCAATACTAGTAC 58.966 52.381 4.31 0.00 0.00 2.73
130 131 2.457813 TCCACCCCGCAATACTAGTA 57.542 50.000 4.77 4.77 0.00 1.82
131 132 1.575419 TTCCACCCCGCAATACTAGT 58.425 50.000 0.00 0.00 0.00 2.57
132 133 2.930826 ATTCCACCCCGCAATACTAG 57.069 50.000 0.00 0.00 0.00 2.57
133 134 3.311091 ACTATTCCACCCCGCAATACTA 58.689 45.455 0.00 0.00 0.00 1.82
134 135 2.124411 ACTATTCCACCCCGCAATACT 58.876 47.619 0.00 0.00 0.00 2.12
135 136 2.632987 ACTATTCCACCCCGCAATAC 57.367 50.000 0.00 0.00 0.00 1.89
136 137 4.986054 AATACTATTCCACCCCGCAATA 57.014 40.909 0.00 0.00 0.00 1.90
137 138 3.876309 AATACTATTCCACCCCGCAAT 57.124 42.857 0.00 0.00 0.00 3.56
138 139 3.712733 ACTAATACTATTCCACCCCGCAA 59.287 43.478 0.00 0.00 0.00 4.85
139 140 3.311091 ACTAATACTATTCCACCCCGCA 58.689 45.455 0.00 0.00 0.00 5.69
140 141 5.473066 TTACTAATACTATTCCACCCCGC 57.527 43.478 0.00 0.00 0.00 6.13
141 142 7.263496 GCTATTACTAATACTATTCCACCCCG 58.737 42.308 0.00 0.00 0.00 5.73
142 143 7.365384 GGGCTATTACTAATACTATTCCACCCC 60.365 44.444 0.00 0.00 0.00 4.95
143 144 7.181485 TGGGCTATTACTAATACTATTCCACCC 59.819 40.741 0.00 0.00 0.00 4.61
144 145 8.142485 TGGGCTATTACTAATACTATTCCACC 57.858 38.462 0.00 0.00 0.00 4.61
145 146 9.819267 GATGGGCTATTACTAATACTATTCCAC 57.181 37.037 0.00 0.00 0.00 4.02
146 147 9.784376 AGATGGGCTATTACTAATACTATTCCA 57.216 33.333 0.00 0.00 0.00 3.53
148 149 9.535878 GCAGATGGGCTATTACTAATACTATTC 57.464 37.037 0.00 0.00 0.00 1.75
149 150 9.046846 TGCAGATGGGCTATTACTAATACTATT 57.953 33.333 0.00 0.00 34.04 1.73
150 151 8.609617 TGCAGATGGGCTATTACTAATACTAT 57.390 34.615 0.00 0.00 34.04 2.12
151 152 8.478066 CATGCAGATGGGCTATTACTAATACTA 58.522 37.037 0.00 0.00 34.04 1.82
152 153 6.935240 TGCAGATGGGCTATTACTAATACT 57.065 37.500 0.00 0.00 34.04 2.12
153 154 6.037610 GCATGCAGATGGGCTATTACTAATAC 59.962 42.308 14.21 0.00 34.04 1.89
154 155 6.115446 GCATGCAGATGGGCTATTACTAATA 58.885 40.000 14.21 0.00 34.04 0.98
155 156 4.946157 GCATGCAGATGGGCTATTACTAAT 59.054 41.667 14.21 0.00 34.04 1.73
156 157 4.202451 TGCATGCAGATGGGCTATTACTAA 60.202 41.667 18.46 0.00 34.04 2.24
157 158 3.327464 TGCATGCAGATGGGCTATTACTA 59.673 43.478 18.46 0.00 34.04 1.82
158 159 2.107031 TGCATGCAGATGGGCTATTACT 59.893 45.455 18.46 0.00 34.04 2.24
159 160 2.507484 TGCATGCAGATGGGCTATTAC 58.493 47.619 18.46 0.00 34.04 1.89
160 161 2.955342 TGCATGCAGATGGGCTATTA 57.045 45.000 18.46 0.00 34.04 0.98
161 162 1.961394 CTTGCATGCAGATGGGCTATT 59.039 47.619 21.50 0.00 34.04 1.73
162 163 1.617322 CTTGCATGCAGATGGGCTAT 58.383 50.000 21.50 0.00 34.04 2.97
163 164 1.105167 GCTTGCATGCAGATGGGCTA 61.105 55.000 21.50 2.04 34.04 3.93
164 165 2.423898 GCTTGCATGCAGATGGGCT 61.424 57.895 21.50 0.00 34.04 5.19
165 166 1.105167 TAGCTTGCATGCAGATGGGC 61.105 55.000 24.65 18.97 34.99 5.36
166 167 1.617322 ATAGCTTGCATGCAGATGGG 58.383 50.000 24.65 10.75 34.99 4.00
167 168 2.159037 CGTATAGCTTGCATGCAGATGG 59.841 50.000 24.65 13.11 34.99 3.51
168 169 2.412455 GCGTATAGCTTGCATGCAGATG 60.412 50.000 24.65 15.59 44.04 2.90
169 170 1.802960 GCGTATAGCTTGCATGCAGAT 59.197 47.619 24.65 18.69 44.04 2.90
170 171 1.220529 GCGTATAGCTTGCATGCAGA 58.779 50.000 24.65 13.44 44.04 4.26
171 172 3.742290 GCGTATAGCTTGCATGCAG 57.258 52.632 24.65 15.64 44.04 4.41
174 175 4.251184 CTGCTGGCGTATAGCTTGCATG 62.251 54.545 0.00 0.00 46.11 4.06
175 176 2.143873 CTGCTGGCGTATAGCTTGCAT 61.144 52.381 0.00 0.00 46.11 3.96
178 179 0.531532 AGCTGCTGGCGTATAGCTTG 60.532 55.000 0.00 4.11 43.49 4.01
179 180 1.826024 AGCTGCTGGCGTATAGCTT 59.174 52.632 0.00 0.00 43.49 3.74
188 189 2.667473 ATCAATTCAAAGCTGCTGGC 57.333 45.000 1.35 0.00 42.19 4.85
189 190 2.671396 GCAATCAATTCAAAGCTGCTGG 59.329 45.455 1.35 0.00 0.00 4.85
190 191 2.344441 CGCAATCAATTCAAAGCTGCTG 59.656 45.455 1.35 0.00 0.00 4.41
191 192 2.602878 CGCAATCAATTCAAAGCTGCT 58.397 42.857 0.00 0.00 0.00 4.24
192 193 1.060122 GCGCAATCAATTCAAAGCTGC 59.940 47.619 0.30 0.00 0.00 5.25
193 194 2.602878 AGCGCAATCAATTCAAAGCTG 58.397 42.857 11.47 0.00 32.01 4.24
194 195 3.308438 AAGCGCAATCAATTCAAAGCT 57.692 38.095 11.47 0.00 34.96 3.74
195 196 3.423907 CCAAAGCGCAATCAATTCAAAGC 60.424 43.478 11.47 0.00 0.00 3.51
196 197 3.123959 CCCAAAGCGCAATCAATTCAAAG 59.876 43.478 11.47 0.00 0.00 2.77
197 198 3.065655 CCCAAAGCGCAATCAATTCAAA 58.934 40.909 11.47 0.00 0.00 2.69
198 199 2.298446 TCCCAAAGCGCAATCAATTCAA 59.702 40.909 11.47 0.00 0.00 2.69
199 200 1.891811 TCCCAAAGCGCAATCAATTCA 59.108 42.857 11.47 0.00 0.00 2.57
200 201 2.652941 TCCCAAAGCGCAATCAATTC 57.347 45.000 11.47 0.00 0.00 2.17
201 202 2.562298 TCTTCCCAAAGCGCAATCAATT 59.438 40.909 11.47 0.00 32.18 2.32
202 203 2.094545 GTCTTCCCAAAGCGCAATCAAT 60.095 45.455 11.47 0.00 32.18 2.57
203 204 1.269448 GTCTTCCCAAAGCGCAATCAA 59.731 47.619 11.47 0.00 32.18 2.57
204 205 0.881118 GTCTTCCCAAAGCGCAATCA 59.119 50.000 11.47 0.00 32.18 2.57
205 206 0.179189 CGTCTTCCCAAAGCGCAATC 60.179 55.000 11.47 0.00 32.18 2.67
206 207 1.875963 CGTCTTCCCAAAGCGCAAT 59.124 52.632 11.47 0.00 32.18 3.56
207 208 3.339731 CGTCTTCCCAAAGCGCAA 58.660 55.556 11.47 0.00 32.18 4.85
210 211 2.863153 CTGCGTCTTCCCAAAGCG 59.137 61.111 0.00 0.00 36.08 4.68
211 212 2.563427 GCTGCGTCTTCCCAAAGC 59.437 61.111 0.00 0.00 32.18 3.51
212 213 2.863153 CGCTGCGTCTTCCCAAAG 59.137 61.111 14.93 0.00 0.00 2.77
213 214 3.353836 GCGCTGCGTCTTCCCAAA 61.354 61.111 24.04 0.00 0.00 3.28
220 221 2.996168 AAAGTGAAGGCGCTGCGTCT 62.996 55.000 25.01 25.01 46.41 4.18
221 222 2.117941 AAAAGTGAAGGCGCTGCGTC 62.118 55.000 20.33 20.33 34.49 5.19
222 223 1.724582 AAAAAGTGAAGGCGCTGCGT 61.725 50.000 24.04 3.19 34.49 5.24
223 224 1.008538 AAAAAGTGAAGGCGCTGCG 60.009 52.632 19.17 19.17 34.49 5.18
224 225 1.551503 GCAAAAAGTGAAGGCGCTGC 61.552 55.000 7.64 0.37 34.49 5.25
225 226 0.248990 TGCAAAAAGTGAAGGCGCTG 60.249 50.000 7.64 0.00 34.49 5.18
226 227 0.675633 ATGCAAAAAGTGAAGGCGCT 59.324 45.000 7.64 0.00 36.13 5.92
227 228 0.785979 CATGCAAAAAGTGAAGGCGC 59.214 50.000 0.00 0.00 0.00 6.53
228 229 1.421382 CCATGCAAAAAGTGAAGGCG 58.579 50.000 0.00 0.00 0.00 5.52
229 230 1.150827 GCCATGCAAAAAGTGAAGGC 58.849 50.000 0.00 0.00 34.30 4.35
230 231 1.421382 CGCCATGCAAAAAGTGAAGG 58.579 50.000 0.00 0.00 0.00 3.46
231 232 0.785979 GCGCCATGCAAAAAGTGAAG 59.214 50.000 0.00 0.00 45.45 3.02
232 233 2.897780 GCGCCATGCAAAAAGTGAA 58.102 47.368 0.00 0.00 45.45 3.18
233 234 4.651585 GCGCCATGCAAAAAGTGA 57.348 50.000 0.00 0.00 45.45 3.41
256 257 1.077716 ACATTTACAGGGCCGCTCC 60.078 57.895 0.00 0.00 0.00 4.70
257 258 1.376609 CCACATTTACAGGGCCGCTC 61.377 60.000 0.00 0.00 0.00 5.03
258 259 1.378514 CCACATTTACAGGGCCGCT 60.379 57.895 0.00 0.00 0.00 5.52
259 260 0.393267 TACCACATTTACAGGGCCGC 60.393 55.000 0.00 0.00 0.00 6.53
260 261 1.375551 GTACCACATTTACAGGGCCG 58.624 55.000 0.00 0.00 0.00 6.13
261 262 1.065998 TCGTACCACATTTACAGGGCC 60.066 52.381 0.00 0.00 0.00 5.80
262 263 2.277084 CTCGTACCACATTTACAGGGC 58.723 52.381 0.00 0.00 0.00 5.19
263 264 2.277084 GCTCGTACCACATTTACAGGG 58.723 52.381 0.00 0.00 0.00 4.45
264 265 1.924524 CGCTCGTACCACATTTACAGG 59.075 52.381 0.00 0.00 0.00 4.00
265 266 2.344441 CACGCTCGTACCACATTTACAG 59.656 50.000 0.00 0.00 0.00 2.74
266 267 2.330286 CACGCTCGTACCACATTTACA 58.670 47.619 0.00 0.00 0.00 2.41
267 268 1.060122 GCACGCTCGTACCACATTTAC 59.940 52.381 0.00 0.00 0.00 2.01
268 269 1.352114 GCACGCTCGTACCACATTTA 58.648 50.000 0.00 0.00 0.00 1.40
269 270 1.623081 CGCACGCTCGTACCACATTT 61.623 55.000 0.00 0.00 0.00 2.32
270 271 2.092291 CGCACGCTCGTACCACATT 61.092 57.895 0.00 0.00 0.00 2.71
271 272 2.506217 CGCACGCTCGTACCACAT 60.506 61.111 0.00 0.00 0.00 3.21
272 273 4.710695 CCGCACGCTCGTACCACA 62.711 66.667 0.00 0.00 0.00 4.17
288 289 1.844544 TTTTAGGTCCCCTCGGTGCC 61.845 60.000 0.00 0.00 34.61 5.01
289 290 0.037160 TTTTTAGGTCCCCTCGGTGC 59.963 55.000 0.00 0.00 34.61 5.01
290 291 1.612462 GGTTTTTAGGTCCCCTCGGTG 60.612 57.143 0.00 0.00 34.61 4.94
291 292 0.694771 GGTTTTTAGGTCCCCTCGGT 59.305 55.000 0.00 0.00 34.61 4.69
292 293 0.034767 GGGTTTTTAGGTCCCCTCGG 60.035 60.000 0.00 0.00 34.61 4.63
293 294 0.392060 CGGGTTTTTAGGTCCCCTCG 60.392 60.000 0.00 0.00 38.09 4.63
294 295 0.034767 CCGGGTTTTTAGGTCCCCTC 60.035 60.000 0.00 0.00 38.09 4.30
295 296 0.476219 TCCGGGTTTTTAGGTCCCCT 60.476 55.000 0.00 0.00 38.09 4.79
296 297 0.322816 GTCCGGGTTTTTAGGTCCCC 60.323 60.000 0.00 0.00 38.09 4.81
297 298 0.674581 CGTCCGGGTTTTTAGGTCCC 60.675 60.000 0.00 0.00 37.98 4.46
298 299 0.674581 CCGTCCGGGTTTTTAGGTCC 60.675 60.000 0.00 0.00 0.00 4.46
299 300 0.321346 TCCGTCCGGGTTTTTAGGTC 59.679 55.000 0.00 0.00 37.00 3.85
300 301 0.322648 CTCCGTCCGGGTTTTTAGGT 59.677 55.000 0.00 0.00 37.00 3.08
301 302 0.392060 CCTCCGTCCGGGTTTTTAGG 60.392 60.000 0.00 0.19 37.00 2.69
302 303 0.322648 ACCTCCGTCCGGGTTTTTAG 59.677 55.000 0.00 0.00 37.00 1.85
303 304 1.550072 CTACCTCCGTCCGGGTTTTTA 59.450 52.381 0.00 0.00 37.07 1.52
304 305 0.322648 CTACCTCCGTCCGGGTTTTT 59.677 55.000 0.00 0.00 37.07 1.94
305 306 0.833409 ACTACCTCCGTCCGGGTTTT 60.833 55.000 0.00 0.00 37.07 2.43
306 307 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
307 308 0.394899 CTACTACCTCCGTCCGGGTT 60.395 60.000 0.00 0.00 37.07 4.11
308 309 1.225704 CTACTACCTCCGTCCGGGT 59.774 63.158 0.00 0.00 39.40 5.28
309 310 0.469917 TACTACTACCTCCGTCCGGG 59.530 60.000 0.00 0.00 35.59 5.73
310 311 1.876322 CTACTACTACCTCCGTCCGG 58.124 60.000 0.00 0.00 0.00 5.14
311 312 1.202627 AGCTACTACTACCTCCGTCCG 60.203 57.143 0.00 0.00 0.00 4.79
312 313 2.636647 AGCTACTACTACCTCCGTCC 57.363 55.000 0.00 0.00 0.00 4.79
313 314 3.807071 GTGTAGCTACTACTACCTCCGTC 59.193 52.174 23.84 0.00 41.57 4.79
314 315 3.198635 TGTGTAGCTACTACTACCTCCGT 59.801 47.826 23.84 0.00 41.57 4.69
315 316 3.801698 TGTGTAGCTACTACTACCTCCG 58.198 50.000 23.84 0.00 41.57 4.63
316 317 5.435291 TCTTGTGTAGCTACTACTACCTCC 58.565 45.833 23.84 0.00 41.57 4.30
317 318 6.114767 ACTCTTGTGTAGCTACTACTACCTC 58.885 44.000 23.84 5.90 41.57 3.85
318 319 6.064735 ACTCTTGTGTAGCTACTACTACCT 57.935 41.667 23.84 0.43 41.57 3.08
319 320 6.820656 TGTACTCTTGTGTAGCTACTACTACC 59.179 42.308 23.84 6.41 41.57 3.18
320 321 7.840342 TGTACTCTTGTGTAGCTACTACTAC 57.160 40.000 23.84 14.19 42.41 2.73
322 323 7.941431 AATGTACTCTTGTGTAGCTACTACT 57.059 36.000 23.84 7.62 37.78 2.57
323 324 8.127954 GGTAATGTACTCTTGTGTAGCTACTAC 58.872 40.741 23.84 19.00 37.46 2.73
324 325 7.284034 GGGTAATGTACTCTTGTGTAGCTACTA 59.716 40.741 23.84 10.91 0.00 1.82
325 326 6.096564 GGGTAATGTACTCTTGTGTAGCTACT 59.903 42.308 23.84 5.18 0.00 2.57
326 327 6.271566 GGGTAATGTACTCTTGTGTAGCTAC 58.728 44.000 17.30 17.30 0.00 3.58
327 328 5.066893 CGGGTAATGTACTCTTGTGTAGCTA 59.933 44.000 0.00 0.00 0.00 3.32
328 329 4.142227 CGGGTAATGTACTCTTGTGTAGCT 60.142 45.833 0.00 0.00 0.00 3.32
329 330 4.110482 CGGGTAATGTACTCTTGTGTAGC 58.890 47.826 0.00 0.00 0.00 3.58
334 335 4.158025 CACTCTCGGGTAATGTACTCTTGT 59.842 45.833 0.00 0.00 0.00 3.16
352 353 1.760086 CATCCGGGCTCTCCACTCT 60.760 63.158 0.00 0.00 34.36 3.24
366 367 2.165030 CCATGGCTCACAAAGAACATCC 59.835 50.000 0.00 0.00 0.00 3.51
378 379 0.815213 GAGCGTATTGCCATGGCTCA 60.815 55.000 35.53 23.24 47.00 4.26
396 397 0.892755 ACTTTAGATGGACGCGTGGA 59.107 50.000 20.70 1.85 0.00 4.02
403 404 6.419771 GCGCTTTACATAACTTTAGATGGAC 58.580 40.000 0.00 0.00 0.00 4.02
465 466 2.881074 CTGATTCAGTGTCGGTTCGAT 58.119 47.619 5.46 0.00 38.42 3.59
466 467 1.668919 GCTGATTCAGTGTCGGTTCGA 60.669 52.381 14.90 0.00 33.43 3.71
488 489 8.314751 CACTATATATCTCCCGGTCTTCATTTT 58.685 37.037 0.00 0.00 0.00 1.82
492 493 4.705507 GCACTATATATCTCCCGGTCTTCA 59.294 45.833 0.00 0.00 0.00 3.02
652 661 6.799925 CGTTTAGCTTGTTCGGATGTATTTTT 59.200 34.615 0.00 0.00 0.00 1.94
653 662 6.311723 CGTTTAGCTTGTTCGGATGTATTTT 58.688 36.000 0.00 0.00 0.00 1.82
654 663 5.672819 GCGTTTAGCTTGTTCGGATGTATTT 60.673 40.000 0.00 0.00 44.04 1.40
655 664 4.201783 GCGTTTAGCTTGTTCGGATGTATT 60.202 41.667 0.00 0.00 44.04 1.89
658 667 1.463444 GCGTTTAGCTTGTTCGGATGT 59.537 47.619 0.00 0.00 44.04 3.06
672 681 0.947180 AAGAAAGGAGCGCGCGTTTA 60.947 50.000 32.35 0.00 0.00 2.01
689 698 4.398319 TGCTAAGGAAAGTGGAAAGGAAG 58.602 43.478 0.00 0.00 0.00 3.46
691 700 3.394606 ACTGCTAAGGAAAGTGGAAAGGA 59.605 43.478 0.00 0.00 0.00 3.36
692 701 3.756117 ACTGCTAAGGAAAGTGGAAAGG 58.244 45.455 0.00 0.00 0.00 3.11
694 703 6.121776 TGATACTGCTAAGGAAAGTGGAAA 57.878 37.500 0.00 0.00 0.00 3.13
696 705 5.957771 ATGATACTGCTAAGGAAAGTGGA 57.042 39.130 0.00 0.00 0.00 4.02
725 734 0.833409 AAAGGCAAAGCTGGGAAGGG 60.833 55.000 0.00 0.00 0.00 3.95
750 760 3.931468 ACGATCATCAGTCAGCAAAAGAG 59.069 43.478 0.00 0.00 0.00 2.85
756 766 3.531934 ATGAACGATCATCAGTCAGCA 57.468 42.857 1.78 0.00 42.75 4.41
761 771 7.298122 GTTGTTGTTTATGAACGATCATCAGT 58.702 34.615 11.84 0.00 42.75 3.41
762 772 6.462636 CGTTGTTGTTTATGAACGATCATCAG 59.537 38.462 11.84 0.00 42.75 2.90
763 773 6.303370 CGTTGTTGTTTATGAACGATCATCA 58.697 36.000 11.84 1.54 42.75 3.07
764 774 5.225129 GCGTTGTTGTTTATGAACGATCATC 59.775 40.000 11.84 0.00 42.75 2.92
792 1077 3.841758 GTTATCGGTCGGCGGGGT 61.842 66.667 7.21 0.00 0.00 4.95
802 1087 1.607628 CTAGAGGGACGTGGTTATCGG 59.392 57.143 0.00 0.00 0.00 4.18
809 1108 1.817209 GAAGGCTAGAGGGACGTGG 59.183 63.158 0.00 0.00 0.00 4.94
820 1119 0.883153 TGTGCGTTAGTCGAAGGCTA 59.117 50.000 10.94 0.00 46.45 3.93
828 1131 2.093783 GCTGTGGTATTGTGCGTTAGTC 59.906 50.000 0.00 0.00 0.00 2.59
833 1136 2.691409 ATAGCTGTGGTATTGTGCGT 57.309 45.000 0.00 0.00 0.00 5.24
835 1138 5.005779 GCGATATATAGCTGTGGTATTGTGC 59.994 44.000 10.27 0.00 0.00 4.57
848 1151 4.491234 AGTAGGCATCGCGATATATAGC 57.509 45.455 23.22 19.78 0.00 2.97
863 1166 0.104487 GCTCGGGAGGTTAAGTAGGC 59.896 60.000 0.00 0.00 0.00 3.93
870 1183 1.686325 GATGGCAGCTCGGGAGGTTA 61.686 60.000 0.00 0.00 36.98 2.85
874 1187 2.108566 CTGATGGCAGCTCGGGAG 59.891 66.667 3.69 0.00 34.95 4.30
890 1204 1.135373 CCTATTATGATCGGCGCGACT 60.135 52.381 12.10 0.00 39.18 4.18
891 1205 1.269166 CCTATTATGATCGGCGCGAC 58.731 55.000 12.10 5.80 39.18 5.19
892 1206 0.885879 ACCTATTATGATCGGCGCGA 59.114 50.000 12.10 2.30 41.13 5.87
893 1207 1.135373 AGACCTATTATGATCGGCGCG 60.135 52.381 0.00 0.00 0.00 6.86
894 1208 2.094700 TGAGACCTATTATGATCGGCGC 60.095 50.000 0.00 0.00 0.00 6.53
900 1225 6.719370 GGAGTGAGAGTGAGACCTATTATGAT 59.281 42.308 0.00 0.00 0.00 2.45
908 1233 0.322997 CGGGAGTGAGAGTGAGACCT 60.323 60.000 0.00 0.00 0.00 3.85
1140 1471 4.253257 CCGAGCGAGCCGAGGTAC 62.253 72.222 7.36 0.00 0.00 3.34
1490 1830 2.258591 CACTGTACTCGGCGCTGT 59.741 61.111 17.37 11.03 0.00 4.40
1493 1833 2.809601 CACCACTGTACTCGGCGC 60.810 66.667 0.00 0.00 0.00 6.53
1543 1883 4.787280 AGTGGAGGCGGAGGGGAG 62.787 72.222 0.00 0.00 0.00 4.30
1544 1884 4.332543 AAGTGGAGGCGGAGGGGA 62.333 66.667 0.00 0.00 0.00 4.81
1545 1885 4.101448 CAAGTGGAGGCGGAGGGG 62.101 72.222 0.00 0.00 0.00 4.79
1546 1886 4.785453 GCAAGTGGAGGCGGAGGG 62.785 72.222 0.00 0.00 0.00 4.30
1547 1887 3.710722 AGCAAGTGGAGGCGGAGG 61.711 66.667 0.00 0.00 34.54 4.30
1548 1888 2.435586 CAGCAAGTGGAGGCGGAG 60.436 66.667 0.00 0.00 34.54 4.63
1549 1889 4.704833 GCAGCAAGTGGAGGCGGA 62.705 66.667 0.00 0.00 34.54 5.54
1567 1907 2.899838 TTCCACACGTGCACTGCC 60.900 61.111 17.22 0.00 0.00 4.85
1569 1909 0.662619 AATGTTCCACACGTGCACTG 59.337 50.000 17.22 14.19 0.00 3.66
1570 1910 0.944386 GAATGTTCCACACGTGCACT 59.056 50.000 17.22 0.00 0.00 4.40
1571 1911 0.660488 TGAATGTTCCACACGTGCAC 59.340 50.000 17.22 6.82 0.00 4.57
1572 1912 1.383523 TTGAATGTTCCACACGTGCA 58.616 45.000 17.22 5.25 0.00 4.57
1582 1955 7.649306 ACTGTTAAATGTCAGCTTTGAATGTTC 59.351 33.333 0.00 0.00 35.37 3.18
1590 1963 4.916983 TGCACTGTTAAATGTCAGCTTT 57.083 36.364 0.00 0.00 35.37 3.51
1632 2008 0.673644 GCCAAAGAAGCTGCTCGGTA 60.674 55.000 1.00 0.00 0.00 4.02
1687 2072 1.735198 GATCCGGTCGTGCGAAACA 60.735 57.895 0.00 0.00 0.00 2.83
2563 2951 2.048222 ACCTGTCGCATGTCGTGG 60.048 61.111 8.91 11.14 39.67 4.94
2749 3137 4.135493 GCAAGCGACGCCGAGAAC 62.135 66.667 17.79 0.00 38.22 3.01
2794 3182 1.448365 CTAGTGCACATCGCTGCCA 60.448 57.895 21.04 0.00 43.06 4.92
2824 3212 3.942748 TCCCCAAAATGAACGTAGTATGC 59.057 43.478 0.00 0.00 45.00 3.14
2837 3263 8.903820 CGTATAGAAAAGAAATCTCCCCAAAAT 58.096 33.333 0.00 0.00 0.00 1.82
2860 3286 6.660521 TCCTACAAGAACTTCCATCTTACGTA 59.339 38.462 0.00 0.00 35.43 3.57
2863 3289 8.794335 AAATCCTACAAGAACTTCCATCTTAC 57.206 34.615 0.00 0.00 35.43 2.34
2870 3301 8.166422 TCTTTGAAAATCCTACAAGAACTTCC 57.834 34.615 0.00 0.00 0.00 3.46
2885 3316 8.606602 GTTTTGCTGTCTCATTTCTTTGAAAAT 58.393 29.630 0.00 0.00 0.00 1.82
2890 3321 6.267817 TCTGTTTTGCTGTCTCATTTCTTTG 58.732 36.000 0.00 0.00 0.00 2.77
2900 3338 5.858381 TCAGTTATCTCTGTTTTGCTGTCT 58.142 37.500 0.00 0.00 36.85 3.41
2903 3341 6.017605 ACAACTCAGTTATCTCTGTTTTGCTG 60.018 38.462 0.00 0.00 36.85 4.41
2990 3428 5.793030 AGACGAGGGAATACATTTCTAGG 57.207 43.478 0.00 0.00 0.00 3.02
2991 3429 5.463724 GCAAGACGAGGGAATACATTTCTAG 59.536 44.000 0.00 0.00 0.00 2.43
3009 3447 0.235926 GGCAGTTTGAGACGCAAGAC 59.764 55.000 0.00 0.00 37.87 3.01
3020 3458 4.607024 CAAACCGACGGCAGTTTG 57.393 55.556 15.33 15.33 44.75 2.93
3039 3477 6.073003 GGTGCCTTTTATCGATCTTATTCCTG 60.073 42.308 0.00 0.00 0.00 3.86
3050 3488 7.107542 ACTATACTTTTGGTGCCTTTTATCGA 58.892 34.615 0.00 0.00 0.00 3.59
3153 3595 5.915196 CCTAAAAGTAAACTGTGCTCTTTGC 59.085 40.000 5.57 0.00 43.25 3.68
3173 3615 5.067283 GGAAAAACAGAGACTTGTTGCCTAA 59.933 40.000 4.48 0.00 40.24 2.69
3232 3675 7.116736 GGATAGGTTTGGTCTTTTCCATTCTA 58.883 38.462 0.00 0.00 37.33 2.10
3250 3693 4.975147 TGATGTAAGGTGGAATGGATAGGT 59.025 41.667 0.00 0.00 0.00 3.08
3327 3770 0.250684 TCAAGGCCAGAATTGCGACA 60.251 50.000 5.01 0.00 0.00 4.35
3399 3844 9.540538 TTTGGTTGATTCCCTCTATATTTTTCA 57.459 29.630 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.