Multiple sequence alignment - TraesCS6B01G280500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G280500 chr6B 100.000 3662 0 0 1 3662 506700873 506704534 0.000000e+00 6763.0
1 TraesCS6B01G280500 chr6B 100.000 2545 0 0 4261 6805 506705133 506707677 0.000000e+00 4700.0
2 TraesCS6B01G280500 chr6B 96.207 290 10 1 4397 4685 639535538 639535249 2.220000e-129 473.0
3 TraesCS6B01G280500 chr6B 95.318 299 6 5 4395 4685 225554017 225553719 1.030000e-127 468.0
4 TraesCS6B01G280500 chr6B 98.855 262 3 0 3397 3658 639535767 639535506 1.030000e-127 468.0
5 TraesCS6B01G280500 chr6B 97.770 269 6 0 3392 3660 560806019 560805751 1.340000e-126 464.0
6 TraesCS6B01G280500 chr6B 98.113 265 5 0 3396 3660 3571869 3572133 4.810000e-126 462.0
7 TraesCS6B01G280500 chr6B 94.631 298 12 2 4392 4689 608109558 608109851 6.220000e-125 459.0
8 TraesCS6B01G280500 chr6B 94.932 296 10 4 4395 4687 715193335 715193042 6.220000e-125 459.0
9 TraesCS6B01G280500 chr6B 95.522 134 5 1 4261 4394 3572148 3572280 5.350000e-51 213.0
10 TraesCS6B01G280500 chr6D 91.811 2137 121 22 1202 3325 317492633 317490538 0.000000e+00 2928.0
11 TraesCS6B01G280500 chr6D 90.179 1171 73 20 1 1140 317493814 317492655 0.000000e+00 1487.0
12 TraesCS6B01G280500 chr6D 94.411 501 22 5 5476 5975 317489635 317489140 0.000000e+00 765.0
13 TraesCS6B01G280500 chr6D 92.432 370 22 5 6418 6786 317488803 317488439 2.170000e-144 523.0
14 TraesCS6B01G280500 chr6D 93.642 346 17 4 6034 6377 317489148 317488806 4.710000e-141 512.0
15 TraesCS6B01G280500 chr6D 95.484 310 11 3 4684 4992 317490454 317490147 6.130000e-135 492.0
16 TraesCS6B01G280500 chr6D 88.642 405 29 3 5040 5434 317490151 317489754 1.720000e-130 477.0
17 TraesCS6B01G280500 chr6D 100.000 32 0 0 3341 3372 317490481 317490450 7.370000e-05 60.2
18 TraesCS6B01G280500 chr6A 97.100 1345 29 5 2034 3372 455049453 455048113 0.000000e+00 2259.0
19 TraesCS6B01G280500 chr6A 90.300 567 29 12 578 1136 455050633 455050085 0.000000e+00 719.0
20 TraesCS6B01G280500 chr6A 93.162 468 27 5 5476 5942 455047309 455046846 0.000000e+00 682.0
21 TraesCS6B01G280500 chr6A 90.157 447 38 5 1560 2005 455049894 455049453 1.650000e-160 577.0
22 TraesCS6B01G280500 chr6A 92.204 372 19 7 6418 6786 455046497 455046133 1.010000e-142 518.0
23 TraesCS6B01G280500 chr6A 88.350 412 33 4 5040 5441 455047826 455047420 1.330000e-131 481.0
24 TraesCS6B01G280500 chr6A 89.884 346 19 9 6033 6377 455046830 455046500 1.360000e-116 431.0
25 TraesCS6B01G280500 chr6A 90.645 310 14 7 4684 4992 455048117 455047822 1.380000e-106 398.0
26 TraesCS6B01G280500 chr6A 90.541 74 7 0 1202 1275 455050061 455049988 1.560000e-16 99.0
27 TraesCS6B01G280500 chr6A 89.362 47 3 2 3351 3396 47980248 47980203 2.650000e-04 58.4
28 TraesCS6B01G280500 chr6A 94.737 38 1 1 3359 3396 379658655 379658619 2.650000e-04 58.4
29 TraesCS6B01G280500 chr3B 97.260 292 7 1 4395 4685 107773505 107773214 1.700000e-135 494.0
30 TraesCS6B01G280500 chr3B 95.302 298 9 4 4395 4689 20159471 20159176 1.030000e-127 468.0
31 TraesCS6B01G280500 chrUn 97.203 286 7 1 4400 4684 31729503 31729788 3.690000e-132 483.0
32 TraesCS6B01G280500 chrUn 97.203 286 7 1 4400 4684 278206490 278206775 3.690000e-132 483.0
33 TraesCS6B01G280500 chrUn 96.043 278 9 2 3387 3662 31729248 31729525 1.040000e-122 451.0
34 TraesCS6B01G280500 chrUn 96.043 278 9 2 3387 3662 278206235 278206512 1.040000e-122 451.0
35 TraesCS6B01G280500 chr4A 98.491 265 4 0 3394 3658 698936340 698936076 1.030000e-127 468.0
36 TraesCS6B01G280500 chr4A 89.209 139 11 3 4261 4395 698936036 698935898 3.260000e-38 171.0
37 TraesCS6B01G280500 chr7B 98.120 266 5 0 3393 3658 467536118 467535853 1.340000e-126 464.0
38 TraesCS6B01G280500 chr5B 97.770 269 6 0 3394 3662 185563492 185563224 1.340000e-126 464.0
39 TraesCS6B01G280500 chr3A 98.473 262 4 0 3396 3657 272767217 272766956 4.810000e-126 462.0
40 TraesCS6B01G280500 chr3A 92.500 40 3 0 3360 3399 7945630 7945591 2.650000e-04 58.4
41 TraesCS6B01G280500 chr1B 95.254 295 4 4 4395 4689 566984959 566984675 6.220000e-125 459.0
42 TraesCS6B01G280500 chr1B 92.105 38 3 0 3359 3396 666981406 666981369 3.000000e-03 54.7
43 TraesCS6B01G280500 chr2B 92.130 216 7 1 3443 3658 100914842 100914637 5.160000e-76 296.0
44 TraesCS6B01G280500 chr3D 89.937 159 14 2 3394 3551 499956313 499956156 3.220000e-48 204.0
45 TraesCS6B01G280500 chr3D 83.333 114 16 3 3440 3551 152699317 152699205 1.210000e-17 102.0
46 TraesCS6B01G280500 chr1D 96.970 33 1 0 3364 3396 42897378 42897410 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G280500 chr6B 506700873 506707677 6804 False 5731.500000 6763 100.000000 1 6805 2 chr6B.!!$F3 6804
1 TraesCS6B01G280500 chr6B 639535249 639535767 518 True 470.500000 473 97.531000 3397 4685 2 chr6B.!!$R4 1288
2 TraesCS6B01G280500 chr6D 317488439 317493814 5375 True 905.525000 2928 93.325125 1 6786 8 chr6D.!!$R1 6785
3 TraesCS6B01G280500 chr6A 455046133 455050633 4500 True 684.888889 2259 91.371444 578 6786 9 chr6A.!!$R3 6208
4 TraesCS6B01G280500 chrUn 31729248 31729788 540 False 467.000000 483 96.623000 3387 4684 2 chrUn.!!$F1 1297
5 TraesCS6B01G280500 chrUn 278206235 278206775 540 False 467.000000 483 96.623000 3387 4684 2 chrUn.!!$F2 1297

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 709 0.322456 TTGCTTCCATGGTTCTCCGG 60.322 55.000 12.58 0.0 36.30 5.14 F
1158 1195 0.107848 TTACTAAGCTTGCGGGCCTC 60.108 55.000 9.86 0.0 0.00 4.70 F
1189 1226 0.179161 CGGCGTCGATCTTGTTCTCT 60.179 55.000 1.44 0.0 39.00 3.10 F
1608 1656 0.183492 AGAGTGCCCAACTTGCTGAA 59.817 50.000 0.00 0.0 40.07 3.02 F
1609 1657 1.202976 AGAGTGCCCAACTTGCTGAAT 60.203 47.619 0.00 0.0 40.07 2.57 F
3391 3487 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.0 0.00 4.20 F
4357 4453 0.041312 CGTTCTGCCTCGGTTTGTTG 60.041 55.000 0.00 0.0 0.00 3.33 F
5341 5452 0.250513 CCTACCTCCCTGTTCACTGC 59.749 60.000 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1544 1592 0.109153 TCTGCCTGCTCTGCTGAAAA 59.891 50.000 0.0 0.00 34.34 2.29 R
1980 2030 2.325583 AAGAAATAGGCGCCGAATGA 57.674 45.000 23.2 5.58 0.00 2.57 R
2189 2239 3.011144 TGGGGGAATGAAGACATAAAGCA 59.989 43.478 0.0 0.00 35.50 3.91 R
3384 3480 0.790993 ACACCCTCTAAGTCCCTGGA 59.209 55.000 0.0 0.00 0.00 3.86 R
3395 3491 1.133482 CCCTGGAAACAAACACCCTCT 60.133 52.381 0.0 0.00 42.06 3.69 R
5329 5440 0.037303 AGTCATGGCAGTGAACAGGG 59.963 55.000 0.0 0.00 0.00 4.45 R
5473 5584 0.107993 CATCAGGTCCACGTCTGCAT 60.108 55.000 0.0 0.00 0.00 3.96 R
6193 6386 1.956477 GCCAACCCTTATCATTGCGAT 59.044 47.619 0.0 0.00 38.21 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.604626 CATGTTTTTGTTCTCAAGTTCTATCTC 57.395 33.333 0.00 0.00 34.88 2.75
39 40 7.531857 TTGTTCTCAAGTTCTATCTCTGTCT 57.468 36.000 0.00 0.00 0.00 3.41
47 48 6.147864 AGTTCTATCTCTGTCTGATGAAGC 57.852 41.667 0.00 0.00 0.00 3.86
53 54 5.574891 TCTCTGTCTGATGAAGCTTAGTC 57.425 43.478 0.00 0.81 0.00 2.59
63 64 3.717707 TGAAGCTTAGTCGCATATGACC 58.282 45.455 6.97 0.00 39.77 4.02
101 105 2.065899 TTGTGTCCCCTTTGGAGTTG 57.934 50.000 0.00 0.00 46.38 3.16
102 106 1.217916 TGTGTCCCCTTTGGAGTTGA 58.782 50.000 0.00 0.00 46.38 3.18
111 116 3.561725 CCCTTTGGAGTTGAGATTATCGC 59.438 47.826 0.00 0.00 0.00 4.58
115 120 3.031013 TGGAGTTGAGATTATCGCCTGA 58.969 45.455 0.00 0.00 0.00 3.86
123 128 1.001406 GATTATCGCCTGACCCTCCTG 59.999 57.143 0.00 0.00 0.00 3.86
137 142 1.344114 CCTCCTGGATGCTAGCTTCTC 59.656 57.143 24.89 17.14 34.57 2.87
138 143 2.318908 CTCCTGGATGCTAGCTTCTCT 58.681 52.381 24.89 2.84 0.00 3.10
143 148 1.765314 GGATGCTAGCTTCTCTGGGAA 59.235 52.381 24.89 0.00 0.00 3.97
144 149 2.171448 GGATGCTAGCTTCTCTGGGAAA 59.829 50.000 24.89 0.00 33.07 3.13
161 166 2.945668 GGAAAATGATCTTCCCAGGTCG 59.054 50.000 1.55 0.00 37.03 4.79
162 167 2.044123 AAATGATCTTCCCAGGTCGC 57.956 50.000 0.00 0.00 31.91 5.19
164 169 1.043116 ATGATCTTCCCAGGTCGCGA 61.043 55.000 3.71 3.71 31.91 5.87
177 182 2.651863 CGCGATTGCCGGCATTTC 60.652 61.111 33.25 27.19 38.08 2.17
178 183 2.800736 GCGATTGCCGGCATTTCT 59.199 55.556 33.25 15.68 39.04 2.52
179 184 1.771073 CGCGATTGCCGGCATTTCTA 61.771 55.000 33.25 16.35 38.08 2.10
180 185 0.593128 GCGATTGCCGGCATTTCTAT 59.407 50.000 33.25 21.06 39.04 1.98
188 194 4.460263 TGCCGGCATTTCTATTCTACATT 58.540 39.130 29.03 0.00 0.00 2.71
194 200 6.562270 CGGCATTTCTATTCTACATTGACGAC 60.562 42.308 0.00 0.00 36.50 4.34
199 205 5.657474 TCTATTCTACATTGACGACAACCC 58.343 41.667 1.63 0.00 38.90 4.11
204 210 3.478857 ACATTGACGACAACCCAACTA 57.521 42.857 1.63 0.00 38.90 2.24
216 222 6.084326 ACAACCCAACTATTGCTTTTACAG 57.916 37.500 0.00 0.00 0.00 2.74
218 224 5.959618 ACCCAACTATTGCTTTTACAGTC 57.040 39.130 0.00 0.00 0.00 3.51
223 229 7.606456 CCCAACTATTGCTTTTACAGTCTCTTA 59.394 37.037 0.00 0.00 0.00 2.10
225 231 8.660373 CAACTATTGCTTTTACAGTCTCTTAGG 58.340 37.037 0.00 0.00 0.00 2.69
251 257 3.564053 ACAAGGTTGTTCCGGTAAGAA 57.436 42.857 0.00 0.00 38.47 2.52
320 326 3.068024 TGGATGCAAAAGGAAGACAACAC 59.932 43.478 0.00 0.00 0.00 3.32
330 336 7.410120 AAAGGAAGACAACACTGATTTCTTT 57.590 32.000 0.00 0.00 31.46 2.52
333 339 6.261826 AGGAAGACAACACTGATTTCTTTGAG 59.738 38.462 0.00 0.00 0.00 3.02
337 343 4.580580 ACAACACTGATTTCTTTGAGGACC 59.419 41.667 0.00 0.00 0.00 4.46
364 370 7.122501 TGCCTGCAATTTCATATTCTTGTAAGA 59.877 33.333 0.00 0.00 0.00 2.10
367 373 8.284945 TGCAATTTCATATTCTTGTAAGAGCT 57.715 30.769 0.00 0.00 36.22 4.09
392 402 2.738812 TTTTTGCCGGAATGCCTGA 58.261 47.368 5.05 0.00 0.00 3.86
425 435 1.857049 TGGCCTTGGGACATTTCCA 59.143 52.632 3.32 0.00 44.98 3.53
464 474 6.513806 TGTTTCTATGTTTGTGGATCATGG 57.486 37.500 0.00 0.00 0.00 3.66
487 497 6.820656 TGGTAATTGTGTGCTCAATTTTGTTT 59.179 30.769 14.62 0.00 42.88 2.83
488 498 7.981789 TGGTAATTGTGTGCTCAATTTTGTTTA 59.018 29.630 14.62 0.00 42.88 2.01
489 499 8.987890 GGTAATTGTGTGCTCAATTTTGTTTAT 58.012 29.630 14.62 0.00 42.88 1.40
556 578 9.617975 GGTAAATTTGAAGACAGATCAGAAAAG 57.382 33.333 0.00 0.00 0.00 2.27
559 581 9.962783 AAATTTGAAGACAGATCAGAAAAGAAG 57.037 29.630 0.00 0.00 0.00 2.85
568 590 4.599241 AGATCAGAAAAGAAGGTCTTCCCA 59.401 41.667 7.06 0.00 40.33 4.37
626 652 2.283298 CACATGTAGAAGCAGGCGATT 58.717 47.619 0.00 0.00 0.00 3.34
676 702 0.675633 GTTGCACTTGCTTCCATGGT 59.324 50.000 12.58 0.00 42.66 3.55
683 709 0.322456 TTGCTTCCATGGTTCTCCGG 60.322 55.000 12.58 0.00 36.30 5.14
791 821 3.706373 CCCACCTGTCACCCTCCG 61.706 72.222 0.00 0.00 0.00 4.63
892 923 4.115199 CTCTGCCCCTTTCCCCGG 62.115 72.222 0.00 0.00 0.00 5.73
921 957 2.578714 CGCCTCTGCCCTCTATCCC 61.579 68.421 0.00 0.00 0.00 3.85
926 962 0.642156 TCTGCCCTCTATCCCTTCCA 59.358 55.000 0.00 0.00 0.00 3.53
937 973 3.717294 CCTTCCACCCACCTCCGG 61.717 72.222 0.00 0.00 0.00 5.14
975 1011 4.583254 TGCGTGCGTTCGTGTTGC 62.583 61.111 3.76 0.00 0.00 4.17
1127 1164 2.134287 ACGGGATCATCGGGAGGTG 61.134 63.158 11.43 0.00 44.09 4.00
1130 1167 2.797278 GGATCATCGGGAGGTGCGT 61.797 63.158 0.00 0.00 41.91 5.24
1131 1168 1.592669 GATCATCGGGAGGTGCGTG 60.593 63.158 0.00 0.00 41.91 5.34
1136 1173 3.849951 CGGGAGGTGCGTGCCTAT 61.850 66.667 0.00 0.00 39.34 2.57
1138 1175 1.069258 GGGAGGTGCGTGCCTATAC 59.931 63.158 0.00 0.00 39.34 1.47
1139 1176 1.400530 GGGAGGTGCGTGCCTATACT 61.401 60.000 0.00 0.00 39.34 2.12
1150 1187 4.444720 GCGTGCCTATACTTACTAAGCTTG 59.555 45.833 9.86 1.57 0.00 4.01
1151 1188 4.444720 CGTGCCTATACTTACTAAGCTTGC 59.555 45.833 9.86 0.00 0.00 4.01
1152 1189 4.444720 GTGCCTATACTTACTAAGCTTGCG 59.555 45.833 9.86 2.39 0.00 4.85
1154 1191 4.557205 CCTATACTTACTAAGCTTGCGGG 58.443 47.826 9.86 0.00 0.00 6.13
1155 1192 2.304751 TACTTACTAAGCTTGCGGGC 57.695 50.000 9.86 0.00 0.00 6.13
1156 1193 0.392595 ACTTACTAAGCTTGCGGGCC 60.393 55.000 9.86 0.00 0.00 5.80
1158 1195 0.107848 TTACTAAGCTTGCGGGCCTC 60.108 55.000 9.86 0.00 0.00 4.70
1159 1196 1.968050 TACTAAGCTTGCGGGCCTCC 61.968 60.000 9.86 0.00 0.00 4.30
1184 1221 4.143333 CCCCGGCGTCGATCTTGT 62.143 66.667 12.93 0.00 39.00 3.16
1185 1222 2.125673 CCCGGCGTCGATCTTGTT 60.126 61.111 12.93 0.00 39.00 2.83
1186 1223 2.165301 CCCGGCGTCGATCTTGTTC 61.165 63.158 12.93 0.00 39.00 3.18
1187 1224 1.153823 CCGGCGTCGATCTTGTTCT 60.154 57.895 12.93 0.00 39.00 3.01
1188 1225 1.140407 CCGGCGTCGATCTTGTTCTC 61.140 60.000 12.93 0.00 39.00 2.87
1189 1226 0.179161 CGGCGTCGATCTTGTTCTCT 60.179 55.000 1.44 0.00 39.00 3.10
1190 1227 1.272781 GGCGTCGATCTTGTTCTCTG 58.727 55.000 0.00 0.00 0.00 3.35
1191 1228 1.402984 GGCGTCGATCTTGTTCTCTGT 60.403 52.381 0.00 0.00 0.00 3.41
1192 1229 2.329379 GCGTCGATCTTGTTCTCTGTT 58.671 47.619 0.00 0.00 0.00 3.16
1193 1230 2.731976 GCGTCGATCTTGTTCTCTGTTT 59.268 45.455 0.00 0.00 0.00 2.83
1194 1231 3.184581 GCGTCGATCTTGTTCTCTGTTTT 59.815 43.478 0.00 0.00 0.00 2.43
1195 1232 4.664389 GCGTCGATCTTGTTCTCTGTTTTC 60.664 45.833 0.00 0.00 0.00 2.29
1196 1233 4.681942 CGTCGATCTTGTTCTCTGTTTTCT 59.318 41.667 0.00 0.00 0.00 2.52
1197 1234 5.164138 CGTCGATCTTGTTCTCTGTTTTCTC 60.164 44.000 0.00 0.00 0.00 2.87
1198 1235 5.119434 GTCGATCTTGTTCTCTGTTTTCTCC 59.881 44.000 0.00 0.00 0.00 3.71
1199 1236 4.390297 CGATCTTGTTCTCTGTTTTCTCCC 59.610 45.833 0.00 0.00 0.00 4.30
1200 1237 3.728845 TCTTGTTCTCTGTTTTCTCCCG 58.271 45.455 0.00 0.00 0.00 5.14
1246 1284 7.728532 AGGAAAGAAAAGTAATTTGGCTTCCTA 59.271 33.333 17.21 0.00 37.75 2.94
1254 1292 6.867550 AGTAATTTGGCTTCCTAAATTGCTC 58.132 36.000 9.00 1.96 41.89 4.26
1258 1296 2.945008 TGGCTTCCTAAATTGCTCGATG 59.055 45.455 0.00 0.00 0.00 3.84
1262 1300 2.473816 TCCTAAATTGCTCGATGCTCG 58.526 47.619 8.07 0.00 43.37 5.03
1275 1313 3.024991 CGATGCTCGTAGTAACACGTAC 58.975 50.000 0.00 0.00 42.51 3.67
1276 1314 2.508944 TGCTCGTAGTAACACGTACG 57.491 50.000 15.01 15.01 42.51 3.67
1277 1315 1.798223 TGCTCGTAGTAACACGTACGT 59.202 47.619 16.72 16.72 42.14 3.57
1278 1316 2.223144 TGCTCGTAGTAACACGTACGTT 59.777 45.455 20.23 8.14 42.14 3.99
1279 1317 3.226347 GCTCGTAGTAACACGTACGTTT 58.774 45.455 20.23 17.66 42.14 3.60
1280 1318 3.664025 GCTCGTAGTAACACGTACGTTTT 59.336 43.478 20.23 21.24 42.14 2.43
1281 1319 4.146443 GCTCGTAGTAACACGTACGTTTTT 59.854 41.667 23.25 18.56 42.14 1.94
1301 1339 3.713826 TTTCCTTTCTATGCGGACCTT 57.286 42.857 0.00 0.00 0.00 3.50
1312 1350 2.033194 CGGACCTTTCGGTTGCCTC 61.033 63.158 0.00 0.00 45.73 4.70
1331 1369 0.710017 CGAAAGCTTTGCGGATTTGC 59.290 50.000 18.30 0.00 0.00 3.68
1344 1387 3.612860 GCGGATTTGCGATCGATAGTTAT 59.387 43.478 21.57 2.32 37.40 1.89
1350 1393 7.915923 GGATTTGCGATCGATAGTTATCTGATA 59.084 37.037 21.57 0.00 31.29 2.15
1357 1400 9.295214 CGATCGATAGTTATCTGATATGCTTTT 57.705 33.333 10.26 0.00 31.29 2.27
1359 1402 8.244494 TCGATAGTTATCTGATATGCTTTTGC 57.756 34.615 0.00 0.00 41.56 3.68
1360 1403 8.090831 TCGATAGTTATCTGATATGCTTTTGCT 58.909 33.333 0.00 0.00 41.69 3.91
1389 1432 9.920946 AACATATTGAATTCTGGTTGGTATAGT 57.079 29.630 7.05 0.00 0.00 2.12
1402 1445 6.554982 TGGTTGGTATAGTAAGAGATGAGCAT 59.445 38.462 0.00 0.00 0.00 3.79
1404 1447 6.596309 TGGTATAGTAAGAGATGAGCATGG 57.404 41.667 0.00 0.00 0.00 3.66
1428 1475 5.758784 GGCGAGCTCCAAGTTTATATTTACT 59.241 40.000 8.47 0.00 0.00 2.24
1482 1529 8.678199 CGACTTATAGAATATCATGGTAGCAGA 58.322 37.037 0.00 0.00 0.00 4.26
1489 1536 8.292444 AGAATATCATGGTAGCAGACTAGATC 57.708 38.462 0.00 0.00 0.00 2.75
1497 1544 2.513753 AGCAGACTAGATCGAGATGGG 58.486 52.381 10.07 0.00 0.00 4.00
1499 1546 1.543802 CAGACTAGATCGAGATGGGGC 59.456 57.143 10.07 0.00 0.00 5.80
1503 1550 1.133982 CTAGATCGAGATGGGGCATCG 59.866 57.143 0.00 0.00 44.67 3.84
1515 1562 4.628160 GCATCGCTTCATGCCATG 57.372 55.556 0.00 0.00 43.03 3.66
1533 1580 2.159181 GTGGTTCACACGGATTCGG 58.841 57.895 0.00 0.00 40.85 4.30
1544 1592 1.312371 CGGATTCGGTGGTTTGGCAT 61.312 55.000 0.00 0.00 0.00 4.40
1550 1598 1.339610 TCGGTGGTTTGGCATTTTCAG 59.660 47.619 0.00 0.00 0.00 3.02
1553 1601 2.137523 GTGGTTTGGCATTTTCAGCAG 58.862 47.619 0.00 0.00 0.00 4.24
1555 1603 2.036217 TGGTTTGGCATTTTCAGCAGAG 59.964 45.455 0.00 0.00 0.00 3.35
1556 1604 2.064014 GTTTGGCATTTTCAGCAGAGC 58.936 47.619 0.00 0.00 0.00 4.09
1558 1606 0.885879 TGGCATTTTCAGCAGAGCAG 59.114 50.000 0.00 0.00 0.00 4.24
1562 1610 1.135373 CATTTTCAGCAGAGCAGGCAG 60.135 52.381 0.00 0.00 0.00 4.85
1574 1622 0.548510 GCAGGCAGAATTAGGTCCCT 59.451 55.000 0.00 0.00 0.00 4.20
1575 1623 1.748591 GCAGGCAGAATTAGGTCCCTG 60.749 57.143 0.00 0.00 42.04 4.45
1577 1625 2.771943 CAGGCAGAATTAGGTCCCTGTA 59.228 50.000 0.00 0.00 36.10 2.74
1597 1645 4.883585 TGTATCAATGAATTCAGAGTGCCC 59.116 41.667 14.54 0.20 0.00 5.36
1602 1650 3.228188 TGAATTCAGAGTGCCCAACTT 57.772 42.857 3.38 0.00 40.07 2.66
1608 1656 0.183492 AGAGTGCCCAACTTGCTGAA 59.817 50.000 0.00 0.00 40.07 3.02
1609 1657 1.202976 AGAGTGCCCAACTTGCTGAAT 60.203 47.619 0.00 0.00 40.07 2.57
1614 1662 3.989817 GTGCCCAACTTGCTGAATTTAAG 59.010 43.478 0.00 0.00 0.00 1.85
1616 1664 4.343526 TGCCCAACTTGCTGAATTTAAGAA 59.656 37.500 0.00 0.00 0.00 2.52
1618 1666 5.509670 GCCCAACTTGCTGAATTTAAGAAGT 60.510 40.000 0.00 0.00 0.00 3.01
1619 1667 6.515832 CCCAACTTGCTGAATTTAAGAAGTT 58.484 36.000 0.00 0.00 34.72 2.66
1649 1697 1.551430 CACCCAATGCATCCACACATT 59.449 47.619 0.00 0.00 36.96 2.71
1654 1702 5.302568 ACCCAATGCATCCACACATTTATAG 59.697 40.000 0.00 0.00 34.32 1.31
1680 1728 5.742453 GCAACTATGAATGATCAAGCTGTTG 59.258 40.000 17.42 17.42 39.49 3.33
1711 1759 4.898861 GGCATTTCCCCCTTGTATTGATAA 59.101 41.667 0.00 0.00 0.00 1.75
1713 1761 6.043127 GGCATTTCCCCCTTGTATTGATAATT 59.957 38.462 0.00 0.00 0.00 1.40
1720 1768 5.409826 CCCCTTGTATTGATAATTCTCTCGC 59.590 44.000 0.00 0.00 0.00 5.03
1756 1804 1.541588 GCCGATTGGAAATATGGAGCC 59.458 52.381 1.98 0.00 37.49 4.70
1782 1830 5.825507 GCAATTCCATAAGTTGCTAGAAGG 58.174 41.667 0.00 0.00 43.56 3.46
1814 1862 8.467598 TCATAGTTCATTGTAAGGTCTACTCAC 58.532 37.037 0.00 0.00 0.00 3.51
1847 1895 3.938963 TCATCGCCTTTCTTATTGGTGTC 59.061 43.478 0.00 0.00 33.50 3.67
1884 1933 3.689161 GTGAGCTATTGCATTACCACACA 59.311 43.478 1.12 0.00 42.74 3.72
1967 2017 5.467668 TCCTCTCTCCTGTACTTCCATTA 57.532 43.478 0.00 0.00 0.00 1.90
1980 2030 8.121305 TGTACTTCCATTATTGCAATTGAAGT 57.879 30.769 28.94 28.94 42.40 3.01
1986 2036 6.974048 TCCATTATTGCAATTGAAGTCATTCG 59.026 34.615 18.75 0.00 38.34 3.34
1988 2038 2.634982 TGCAATTGAAGTCATTCGGC 57.365 45.000 10.34 0.00 38.34 5.54
2013 2063 7.630924 CGCCTATTTCTTTTACAGTATGGAAG 58.369 38.462 0.00 0.00 42.04 3.46
2026 2076 5.163088 ACAGTATGGAAGTTCTTTCTGGGTT 60.163 40.000 2.25 0.00 43.62 4.11
2032 2082 6.552008 TGGAAGTTCTTTCTGGGTTATGAAT 58.448 36.000 2.25 0.00 36.03 2.57
2189 2239 7.506938 TCTTCCATTTTTCATCTTCCTTTCTGT 59.493 33.333 0.00 0.00 0.00 3.41
3016 3070 4.021192 CCGAACTACCCAAGGTACTGTTTA 60.021 45.833 0.00 0.00 40.86 2.01
3017 3071 5.337813 CCGAACTACCCAAGGTACTGTTTAT 60.338 44.000 0.00 0.00 40.86 1.40
3018 3072 5.579511 CGAACTACCCAAGGTACTGTTTATG 59.420 44.000 0.00 0.00 40.86 1.90
3025 3079 5.064707 CCCAAGGTACTGTTTATGATGAACG 59.935 44.000 0.00 0.00 40.86 3.95
3037 3091 9.980780 TGTTTATGATGAACGTTTATGTGTATG 57.019 29.630 10.64 0.00 0.00 2.39
3094 3149 2.178912 TCCTTTCACTTAGTTGGCCG 57.821 50.000 0.00 0.00 0.00 6.13
3151 3206 5.795441 GGTTGATTCGACAAGCAAGATTTAC 59.205 40.000 11.72 0.00 44.37 2.01
3220 3275 5.358725 TCAATGTGCTGATGTTGCTGATATT 59.641 36.000 0.00 0.00 0.00 1.28
3241 3296 5.738619 TTGACAAGGATAACTGCACTCTA 57.261 39.130 0.00 0.00 0.00 2.43
3254 3309 4.163078 ACTGCACTCTAGAAGGTATGCATT 59.837 41.667 3.54 7.34 41.83 3.56
3372 3468 7.676683 ACCACTATAAGATGGAAAGCTTAGA 57.323 36.000 0.00 0.00 39.46 2.10
3373 3469 7.731054 ACCACTATAAGATGGAAAGCTTAGAG 58.269 38.462 0.00 0.00 40.15 2.43
3374 3470 7.158021 CCACTATAAGATGGAAAGCTTAGAGG 58.842 42.308 0.00 0.00 39.18 3.69
3375 3471 7.158021 CACTATAAGATGGAAAGCTTAGAGGG 58.842 42.308 0.00 2.64 39.18 4.30
3376 3472 6.847036 ACTATAAGATGGAAAGCTTAGAGGGT 59.153 38.462 0.00 0.00 39.18 4.34
3377 3473 3.922171 AGATGGAAAGCTTAGAGGGTG 57.078 47.619 0.00 0.00 0.00 4.61
3378 3474 3.185455 AGATGGAAAGCTTAGAGGGTGT 58.815 45.455 0.00 0.00 0.00 4.16
3379 3475 3.589288 AGATGGAAAGCTTAGAGGGTGTT 59.411 43.478 0.00 0.00 0.00 3.32
3380 3476 3.876309 TGGAAAGCTTAGAGGGTGTTT 57.124 42.857 0.00 0.00 0.00 2.83
3381 3477 3.486383 TGGAAAGCTTAGAGGGTGTTTG 58.514 45.455 0.00 0.00 0.00 2.93
3382 3478 3.117663 TGGAAAGCTTAGAGGGTGTTTGT 60.118 43.478 0.00 0.00 0.00 2.83
3383 3479 3.889538 GGAAAGCTTAGAGGGTGTTTGTT 59.110 43.478 0.00 0.00 0.00 2.83
3384 3480 4.341235 GGAAAGCTTAGAGGGTGTTTGTTT 59.659 41.667 0.00 0.00 0.00 2.83
3385 3481 5.507482 GGAAAGCTTAGAGGGTGTTTGTTTC 60.507 44.000 0.00 0.00 0.00 2.78
3386 3482 3.487372 AGCTTAGAGGGTGTTTGTTTCC 58.513 45.455 0.00 0.00 0.00 3.13
3387 3483 3.117663 AGCTTAGAGGGTGTTTGTTTCCA 60.118 43.478 0.00 0.00 0.00 3.53
3388 3484 3.253432 GCTTAGAGGGTGTTTGTTTCCAG 59.747 47.826 0.00 0.00 0.00 3.86
3389 3485 2.364972 AGAGGGTGTTTGTTTCCAGG 57.635 50.000 0.00 0.00 0.00 4.45
3390 3486 1.133482 AGAGGGTGTTTGTTTCCAGGG 60.133 52.381 0.00 0.00 0.00 4.45
3391 3487 0.930726 AGGGTGTTTGTTTCCAGGGA 59.069 50.000 0.00 0.00 0.00 4.20
3392 3488 1.037493 GGGTGTTTGTTTCCAGGGAC 58.963 55.000 0.00 0.00 0.00 4.46
3393 3489 1.411074 GGGTGTTTGTTTCCAGGGACT 60.411 52.381 0.00 0.00 43.88 3.85
3394 3490 2.384828 GGTGTTTGTTTCCAGGGACTT 58.615 47.619 0.00 0.00 34.60 3.01
3395 3491 3.558033 GGTGTTTGTTTCCAGGGACTTA 58.442 45.455 0.00 0.00 34.60 2.24
3465 3561 3.962718 TCCCTATAAGTCCCACCTAAACG 59.037 47.826 0.00 0.00 0.00 3.60
4341 4437 4.324991 GCCCCACCTCGGTTCGTT 62.325 66.667 0.00 0.00 0.00 3.85
4342 4438 2.047560 CCCCACCTCGGTTCGTTC 60.048 66.667 0.00 0.00 0.00 3.95
4343 4439 2.580601 CCCCACCTCGGTTCGTTCT 61.581 63.158 0.00 0.00 0.00 3.01
4344 4440 1.374252 CCCACCTCGGTTCGTTCTG 60.374 63.158 0.00 0.00 0.00 3.02
4345 4441 2.027625 CCACCTCGGTTCGTTCTGC 61.028 63.158 0.00 0.00 0.00 4.26
4346 4442 2.027625 CACCTCGGTTCGTTCTGCC 61.028 63.158 0.00 0.00 0.00 4.85
4347 4443 2.207924 ACCTCGGTTCGTTCTGCCT 61.208 57.895 0.00 0.00 0.00 4.75
4348 4444 1.446272 CCTCGGTTCGTTCTGCCTC 60.446 63.158 0.00 0.00 0.00 4.70
4349 4445 1.801913 CTCGGTTCGTTCTGCCTCG 60.802 63.158 0.00 0.00 0.00 4.63
4350 4446 2.809601 CGGTTCGTTCTGCCTCGG 60.810 66.667 0.00 0.00 0.00 4.63
4351 4447 2.342648 GGTTCGTTCTGCCTCGGT 59.657 61.111 0.00 0.00 0.00 4.69
4352 4448 1.301479 GGTTCGTTCTGCCTCGGTT 60.301 57.895 0.00 0.00 0.00 4.44
4353 4449 0.883370 GGTTCGTTCTGCCTCGGTTT 60.883 55.000 0.00 0.00 0.00 3.27
4354 4450 0.234884 GTTCGTTCTGCCTCGGTTTG 59.765 55.000 0.00 0.00 0.00 2.93
4355 4451 0.179067 TTCGTTCTGCCTCGGTTTGT 60.179 50.000 0.00 0.00 0.00 2.83
4356 4452 0.179067 TCGTTCTGCCTCGGTTTGTT 60.179 50.000 0.00 0.00 0.00 2.83
4357 4453 0.041312 CGTTCTGCCTCGGTTTGTTG 60.041 55.000 0.00 0.00 0.00 3.33
4358 4454 0.317854 GTTCTGCCTCGGTTTGTTGC 60.318 55.000 0.00 0.00 0.00 4.17
4359 4455 0.749818 TTCTGCCTCGGTTTGTTGCA 60.750 50.000 0.00 0.00 0.00 4.08
4360 4456 1.283793 CTGCCTCGGTTTGTTGCAG 59.716 57.895 0.00 0.00 42.85 4.41
4361 4457 2.050077 GCCTCGGTTTGTTGCAGC 60.050 61.111 0.00 0.00 0.00 5.25
4362 4458 2.252260 CCTCGGTTTGTTGCAGCG 59.748 61.111 0.00 0.00 36.47 5.18
4363 4459 2.252260 CTCGGTTTGTTGCAGCGG 59.748 61.111 0.00 0.00 35.83 5.52
4364 4460 2.515057 TCGGTTTGTTGCAGCGGT 60.515 55.556 0.00 0.00 35.83 5.68
4365 4461 2.353376 CGGTTTGTTGCAGCGGTG 60.353 61.111 10.98 10.98 0.00 4.94
4374 4470 3.512516 GCAGCGGTGCCTCCAATC 61.513 66.667 28.58 0.00 44.72 2.67
4375 4471 3.197790 CAGCGGTGCCTCCAATCG 61.198 66.667 0.00 0.00 35.57 3.34
4380 4476 4.467084 GTGCCTCCAATCGCCGGA 62.467 66.667 5.05 0.00 0.00 5.14
4381 4477 4.467084 TGCCTCCAATCGCCGGAC 62.467 66.667 5.05 0.00 0.00 4.79
4382 4478 4.467084 GCCTCCAATCGCCGGACA 62.467 66.667 5.05 0.00 0.00 4.02
4383 4479 2.202932 CCTCCAATCGCCGGACAG 60.203 66.667 5.05 0.00 0.00 3.51
4384 4480 2.202932 CTCCAATCGCCGGACAGG 60.203 66.667 5.05 0.00 44.97 4.00
4393 4489 4.787280 CCGGACAGGCCCTCTCCT 62.787 72.222 3.37 0.00 36.78 3.69
4398 4494 4.154347 CAGGCCCTCTCCTGTCGC 62.154 72.222 0.00 0.00 46.59 5.19
4618 4715 8.434392 ACTTATAAGTCCCTGTAAACAAACAGA 58.566 33.333 12.50 0.00 41.40 3.41
4685 4782 4.223144 ACTTATGAAACAAACAGGGCCTT 58.777 39.130 1.32 0.00 0.00 4.35
4686 4783 5.390387 ACTTATGAAACAAACAGGGCCTTA 58.610 37.500 1.32 0.00 0.00 2.69
4687 4784 5.476945 ACTTATGAAACAAACAGGGCCTTAG 59.523 40.000 1.32 0.00 0.00 2.18
4704 4801 5.221441 GGCCTTAGTTGTGATTTGGACTTTT 60.221 40.000 0.00 0.00 0.00 2.27
4753 4850 7.867305 TTTGTTTGTGTGTACTAGATTGGAA 57.133 32.000 0.00 0.00 0.00 3.53
4827 4924 1.002792 GCTCCTGTTGGTTTCGAACAC 60.003 52.381 0.00 0.00 34.23 3.32
4859 4956 4.766404 AGCGGAAAAGGACAAACATTAG 57.234 40.909 0.00 0.00 0.00 1.73
4868 4965 9.612620 GAAAAGGACAAACATTAGTATTGACAG 57.387 33.333 0.00 0.00 0.00 3.51
4879 4976 9.712305 ACATTAGTATTGACAGCATACTTATCC 57.288 33.333 5.36 0.00 33.62 2.59
4995 5093 6.839124 AATCATGTTGATTTGGTGCTCTAA 57.161 33.333 0.00 0.00 44.03 2.10
4996 5094 5.627499 TCATGTTGATTTGGTGCTCTAAC 57.373 39.130 0.00 0.00 0.00 2.34
4997 5095 5.316167 TCATGTTGATTTGGTGCTCTAACT 58.684 37.500 0.00 0.00 0.00 2.24
4998 5096 5.181811 TCATGTTGATTTGGTGCTCTAACTG 59.818 40.000 0.00 0.00 0.00 3.16
4999 5097 4.713553 TGTTGATTTGGTGCTCTAACTGA 58.286 39.130 0.00 0.00 0.00 3.41
5000 5098 5.129634 TGTTGATTTGGTGCTCTAACTGAA 58.870 37.500 0.00 0.00 0.00 3.02
5001 5099 5.008613 TGTTGATTTGGTGCTCTAACTGAAC 59.991 40.000 0.00 0.00 0.00 3.18
5002 5100 4.072131 TGATTTGGTGCTCTAACTGAACC 58.928 43.478 0.00 0.00 0.00 3.62
5003 5101 3.857157 TTTGGTGCTCTAACTGAACCT 57.143 42.857 0.00 0.00 0.00 3.50
5004 5102 2.839486 TGGTGCTCTAACTGAACCTG 57.161 50.000 0.00 0.00 0.00 4.00
5005 5103 1.347707 TGGTGCTCTAACTGAACCTGG 59.652 52.381 0.00 0.00 0.00 4.45
5006 5104 1.339151 GGTGCTCTAACTGAACCTGGG 60.339 57.143 0.00 0.00 0.00 4.45
5007 5105 1.348036 GTGCTCTAACTGAACCTGGGT 59.652 52.381 0.00 0.00 0.00 4.51
5008 5106 2.054799 TGCTCTAACTGAACCTGGGTT 58.945 47.619 4.52 4.52 41.54 4.11
5009 5107 2.441750 TGCTCTAACTGAACCTGGGTTT 59.558 45.455 6.46 0.00 38.60 3.27
5010 5108 3.117663 TGCTCTAACTGAACCTGGGTTTT 60.118 43.478 6.46 0.44 38.60 2.43
5011 5109 4.103469 TGCTCTAACTGAACCTGGGTTTTA 59.897 41.667 6.46 1.55 38.60 1.52
5012 5110 4.454847 GCTCTAACTGAACCTGGGTTTTAC 59.545 45.833 6.46 0.00 38.60 2.01
5013 5111 5.617252 CTCTAACTGAACCTGGGTTTTACA 58.383 41.667 6.46 0.02 38.60 2.41
5014 5112 5.370679 TCTAACTGAACCTGGGTTTTACAC 58.629 41.667 6.46 0.00 38.60 2.90
5015 5113 3.945640 ACTGAACCTGGGTTTTACACT 57.054 42.857 6.46 0.00 38.60 3.55
5016 5114 4.245251 ACTGAACCTGGGTTTTACACTT 57.755 40.909 6.46 0.00 38.60 3.16
5017 5115 5.376756 ACTGAACCTGGGTTTTACACTTA 57.623 39.130 6.46 0.00 38.60 2.24
5018 5116 5.948842 ACTGAACCTGGGTTTTACACTTAT 58.051 37.500 6.46 0.00 38.60 1.73
5019 5117 6.002082 ACTGAACCTGGGTTTTACACTTATC 58.998 40.000 6.46 0.00 38.60 1.75
5020 5118 6.183361 ACTGAACCTGGGTTTTACACTTATCT 60.183 38.462 6.46 0.00 38.60 1.98
5021 5119 6.235664 TGAACCTGGGTTTTACACTTATCTC 58.764 40.000 6.46 0.00 38.60 2.75
5022 5120 5.175388 ACCTGGGTTTTACACTTATCTCC 57.825 43.478 0.00 0.00 0.00 3.71
5023 5121 4.600111 ACCTGGGTTTTACACTTATCTCCA 59.400 41.667 0.00 0.00 0.00 3.86
5024 5122 5.073965 ACCTGGGTTTTACACTTATCTCCAA 59.926 40.000 0.00 0.00 0.00 3.53
5025 5123 5.648092 CCTGGGTTTTACACTTATCTCCAAG 59.352 44.000 0.00 0.00 0.00 3.61
5026 5124 5.566469 TGGGTTTTACACTTATCTCCAAGG 58.434 41.667 0.00 0.00 0.00 3.61
5027 5125 4.948004 GGGTTTTACACTTATCTCCAAGGG 59.052 45.833 0.00 0.00 34.94 3.95
5028 5126 5.280830 GGGTTTTACACTTATCTCCAAGGGA 60.281 44.000 0.00 0.00 32.97 4.20
5036 5134 3.318191 CTCCAAGGGAGGGCTGAG 58.682 66.667 4.31 0.00 45.43 3.35
5037 5135 2.285668 TCCAAGGGAGGGCTGAGG 60.286 66.667 0.00 0.00 0.00 3.86
5038 5136 2.612115 CCAAGGGAGGGCTGAGGT 60.612 66.667 0.00 0.00 0.00 3.85
5055 5153 3.084786 GAGGTATGCTGCCTTCAGTTTT 58.915 45.455 0.00 0.00 42.29 2.43
5139 5247 1.281867 ACATCCGGACATGACACCAAT 59.718 47.619 6.12 0.00 0.00 3.16
5161 5269 4.300189 TGTCATGCTGTGGTTGTTTAAC 57.700 40.909 0.00 0.00 36.04 2.01
5183 5291 1.375853 GCCGTGCCATGTTGCATAGA 61.376 55.000 0.00 0.00 44.30 1.98
5192 5300 4.404640 CCATGTTGCATAGAATCCCTGAT 58.595 43.478 0.00 0.00 0.00 2.90
5198 5306 4.973168 TGCATAGAATCCCTGATTACACC 58.027 43.478 0.00 0.00 31.89 4.16
5210 5318 3.696045 TGATTACACCCCATGTTTCCTG 58.304 45.455 0.00 0.00 43.19 3.86
5234 5342 4.441634 GGGTGCGTATGACTCTAGAATGTT 60.442 45.833 0.00 0.00 0.00 2.71
5248 5356 8.812972 ACTCTAGAATGTTTAGGTGTAACATGA 58.187 33.333 0.00 0.00 43.44 3.07
5267 5375 0.385751 ATGTCGGCAGATACGGTCAG 59.614 55.000 0.00 0.00 0.00 3.51
5276 5384 4.047822 GCAGATACGGTCAGAAATGAGAG 58.952 47.826 0.00 0.00 0.00 3.20
5294 5402 4.040339 TGAGAGCATGTTCAAGGACAGTTA 59.960 41.667 12.41 0.00 32.19 2.24
5295 5403 5.171339 AGAGCATGTTCAAGGACAGTTAT 57.829 39.130 12.41 0.00 32.19 1.89
5306 5414 7.113658 TCAAGGACAGTTATCAGACTAATCC 57.886 40.000 0.00 0.00 35.67 3.01
5329 5440 5.936956 CCAGATAAATCATTGCTCCTACCTC 59.063 44.000 0.00 0.00 0.00 3.85
5330 5441 5.936956 CAGATAAATCATTGCTCCTACCTCC 59.063 44.000 0.00 0.00 0.00 4.30
5331 5442 3.584733 AAATCATTGCTCCTACCTCCC 57.415 47.619 0.00 0.00 0.00 4.30
5332 5443 2.503869 ATCATTGCTCCTACCTCCCT 57.496 50.000 0.00 0.00 0.00 4.20
5333 5444 1.500474 TCATTGCTCCTACCTCCCTG 58.500 55.000 0.00 0.00 0.00 4.45
5334 5445 1.207791 CATTGCTCCTACCTCCCTGT 58.792 55.000 0.00 0.00 0.00 4.00
5341 5452 0.250513 CCTACCTCCCTGTTCACTGC 59.749 60.000 0.00 0.00 0.00 4.40
5342 5453 0.250513 CTACCTCCCTGTTCACTGCC 59.749 60.000 0.00 0.00 0.00 4.85
5344 5455 1.136329 ACCTCCCTGTTCACTGCCAT 61.136 55.000 0.00 0.00 0.00 4.40
5350 5461 1.808945 CCTGTTCACTGCCATGACTTC 59.191 52.381 0.00 0.00 0.00 3.01
5359 5470 1.142667 TGCCATGACTTCTGGTTGTGA 59.857 47.619 0.00 0.00 36.10 3.58
5373 5484 1.001815 GTTGTGATGTTCCGTGTTGGG 60.002 52.381 0.00 0.00 38.76 4.12
5385 5496 1.470051 GTGTTGGGTCTTGTGGTTGT 58.530 50.000 0.00 0.00 0.00 3.32
5404 5515 6.088824 GGTTGTGCTGTCATCTTTTTCTATG 58.911 40.000 0.00 0.00 0.00 2.23
5405 5516 5.300969 TGTGCTGTCATCTTTTTCTATGC 57.699 39.130 0.00 0.00 0.00 3.14
5454 5565 9.921637 TCTTTTTCTGTGTAAACAAATGACTTT 57.078 25.926 0.00 0.00 0.00 2.66
5461 5572 9.950680 CTGTGTAAACAAATGACTTTTCTATGT 57.049 29.630 0.00 0.00 0.00 2.29
5498 5686 0.907704 ACGTGGACCTGATGGGCTAA 60.908 55.000 0.00 0.00 42.43 3.09
5565 5753 2.109834 TGTGTCATGGGAAAAGGTGGAT 59.890 45.455 0.00 0.00 0.00 3.41
5638 5826 1.217882 ACGTCTTTGGCTCTCAAACG 58.782 50.000 0.00 0.00 40.14 3.60
5661 5849 3.560668 GCCATCCATGCTCTGATATCCAA 60.561 47.826 0.00 0.00 0.00 3.53
5700 5888 0.035725 CATTGTGCTGAGGCTGAGGA 60.036 55.000 2.44 0.00 39.59 3.71
5717 5905 6.408662 GGCTGAGGAGTTGTCTTCCTATAAAT 60.409 42.308 0.00 0.00 33.37 1.40
5735 5923 8.912988 CCTATAAATTGGAATTTCAAGCAGGTA 58.087 33.333 5.22 0.00 39.24 3.08
5771 5959 2.383245 ATAGCGAAGGGGCCGATGTG 62.383 60.000 0.00 0.00 0.00 3.21
5891 6080 4.687215 GCGAGCCTGGTGAGCACA 62.687 66.667 2.75 0.00 0.00 4.57
5899 6088 2.726821 CCTGGTGAGCACATTTATGGT 58.273 47.619 2.75 0.00 0.00 3.55
5939 6128 2.159421 TCAGATAGACGGCGTTCAGAAC 60.159 50.000 16.19 2.85 0.00 3.01
5957 6146 4.090066 CAGAACGTCGGAAGTGTTTGATAG 59.910 45.833 0.00 0.00 32.63 2.08
5959 6148 4.451629 ACGTCGGAAGTGTTTGATAGAT 57.548 40.909 0.00 0.00 0.00 1.98
5960 6149 5.571784 ACGTCGGAAGTGTTTGATAGATA 57.428 39.130 0.00 0.00 0.00 1.98
5961 6150 5.957798 ACGTCGGAAGTGTTTGATAGATAA 58.042 37.500 0.00 0.00 0.00 1.75
5962 6151 6.034591 ACGTCGGAAGTGTTTGATAGATAAG 58.965 40.000 0.00 0.00 0.00 1.73
5963 6152 6.034591 CGTCGGAAGTGTTTGATAGATAAGT 58.965 40.000 0.00 0.00 0.00 2.24
5964 6153 7.148188 ACGTCGGAAGTGTTTGATAGATAAGTA 60.148 37.037 0.00 0.00 0.00 2.24
5965 6154 7.861372 CGTCGGAAGTGTTTGATAGATAAGTAT 59.139 37.037 0.00 0.00 0.00 2.12
6060 6251 1.964373 GGGTCGTGCCATGTCGTTT 60.964 57.895 0.00 0.00 39.65 3.60
6142 6335 4.736168 GCTTTGTGCTTGTAAATGTCCACA 60.736 41.667 0.00 0.00 38.95 4.17
6173 6366 2.809119 TCAATGTTGATACGTTTGGCGT 59.191 40.909 0.00 0.00 43.86 5.68
6206 6399 3.885297 AGGGGAAACATCGCAATGATAAG 59.115 43.478 0.00 0.00 34.83 1.73
6264 6457 0.254178 AACCTGATGGCAAGCGATCT 59.746 50.000 16.18 0.00 36.63 2.75
6276 6469 5.037385 GGCAAGCGATCTTTATTTTCTTCC 58.963 41.667 0.00 0.00 0.00 3.46
6304 6497 9.461312 TTTCCACTTTGTATATGTGCTATCTTT 57.539 29.630 0.00 0.00 32.14 2.52
6346 6540 6.148264 CAGAAATGACTGCCTTTTCTTCTTC 58.852 40.000 2.80 0.00 42.89 2.87
6347 6541 5.829924 AGAAATGACTGCCTTTTCTTCTTCA 59.170 36.000 0.12 0.00 42.89 3.02
6348 6542 5.444663 AATGACTGCCTTTTCTTCTTCAC 57.555 39.130 0.00 0.00 0.00 3.18
6349 6543 3.884895 TGACTGCCTTTTCTTCTTCACA 58.115 40.909 0.00 0.00 0.00 3.58
6377 6571 4.953269 ACACGCACATTCTAATTTACACG 58.047 39.130 0.00 0.00 0.00 4.49
6378 6572 3.778718 CACGCACATTCTAATTTACACGC 59.221 43.478 0.00 0.00 0.00 5.34
6379 6573 3.433957 ACGCACATTCTAATTTACACGCA 59.566 39.130 0.00 0.00 0.00 5.24
6380 6574 3.778718 CGCACATTCTAATTTACACGCAC 59.221 43.478 0.00 0.00 0.00 5.34
6381 6575 4.667922 CGCACATTCTAATTTACACGCACA 60.668 41.667 0.00 0.00 0.00 4.57
6382 6576 5.331902 GCACATTCTAATTTACACGCACAT 58.668 37.500 0.00 0.00 0.00 3.21
6383 6577 5.799936 GCACATTCTAATTTACACGCACATT 59.200 36.000 0.00 0.00 0.00 2.71
6384 6578 6.021468 GCACATTCTAATTTACACGCACATTC 60.021 38.462 0.00 0.00 0.00 2.67
6385 6579 7.243487 CACATTCTAATTTACACGCACATTCT 58.757 34.615 0.00 0.00 0.00 2.40
6386 6580 8.387354 CACATTCTAATTTACACGCACATTCTA 58.613 33.333 0.00 0.00 0.00 2.10
6387 6581 8.941977 ACATTCTAATTTACACGCACATTCTAA 58.058 29.630 0.00 0.00 0.00 2.10
6388 6582 9.935682 CATTCTAATTTACACGCACATTCTAAT 57.064 29.630 0.00 0.00 0.00 1.73
6396 6590 9.549509 TTTACACGCACATTCTAATTTACATTC 57.450 29.630 0.00 0.00 0.00 2.67
6397 6591 7.377766 ACACGCACATTCTAATTTACATTCT 57.622 32.000 0.00 0.00 0.00 2.40
6398 6592 8.487313 ACACGCACATTCTAATTTACATTCTA 57.513 30.769 0.00 0.00 0.00 2.10
6399 6593 8.941977 ACACGCACATTCTAATTTACATTCTAA 58.058 29.630 0.00 0.00 0.00 2.10
6400 6594 9.935682 CACGCACATTCTAATTTACATTCTAAT 57.064 29.630 0.00 0.00 0.00 1.73
6438 6632 5.002375 CACGCAAAACAAAATTCAAAACTGC 59.998 36.000 0.00 0.00 0.00 4.40
6470 6664 7.560796 AGAATCCTCTGAAGAAAAGGAACTA 57.439 36.000 0.00 0.00 42.29 2.24
6485 6679 8.934023 AAAAGGAACTAATCACAACAGGAATA 57.066 30.769 0.00 0.00 38.49 1.75
6486 6680 7.923414 AAGGAACTAATCACAACAGGAATAC 57.077 36.000 0.00 0.00 38.49 1.89
6521 6715 9.932207 TGAATTCTTGCACATTTCATAGAAAAT 57.068 25.926 7.05 0.00 0.00 1.82
6614 6808 4.127566 ACATAGGCCACAAAAATGATGC 57.872 40.909 5.01 0.00 0.00 3.91
6616 6810 4.955450 ACATAGGCCACAAAAATGATGCTA 59.045 37.500 5.01 0.00 0.00 3.49
6619 6813 5.425196 AGGCCACAAAAATGATGCTATTT 57.575 34.783 5.01 0.00 31.87 1.40
6620 6814 5.807909 AGGCCACAAAAATGATGCTATTTT 58.192 33.333 5.01 0.00 40.84 1.82
6649 6843 7.669427 TCAAAATTTGCAATCACATAGGAGTT 58.331 30.769 0.00 0.00 0.00 3.01
6691 6885 9.202273 GCCTAATTGTTGTGACATTTGATAAAA 57.798 29.630 0.00 0.00 35.29 1.52
6716 6911 2.357637 TCTTTTGCACCAGTTAGCACAC 59.642 45.455 0.00 0.00 41.05 3.82
6720 6915 1.140852 TGCACCAGTTAGCACACTCTT 59.859 47.619 0.00 0.00 35.51 2.85
6786 6982 6.374333 ACAGACCATTGTCAATAACCATGTAC 59.626 38.462 0.00 0.00 44.33 2.90
6787 6983 6.599244 CAGACCATTGTCAATAACCATGTACT 59.401 38.462 0.00 0.00 44.33 2.73
6788 6984 6.823689 AGACCATTGTCAATAACCATGTACTC 59.176 38.462 0.00 0.00 44.33 2.59
6789 6985 5.885912 ACCATTGTCAATAACCATGTACTCC 59.114 40.000 0.00 0.00 30.74 3.85
6790 6986 5.299279 CCATTGTCAATAACCATGTACTCCC 59.701 44.000 0.00 0.00 30.74 4.30
6791 6987 5.772393 TTGTCAATAACCATGTACTCCCT 57.228 39.130 0.00 0.00 0.00 4.20
6792 6988 5.353394 TGTCAATAACCATGTACTCCCTC 57.647 43.478 0.00 0.00 0.00 4.30
6793 6989 4.163458 TGTCAATAACCATGTACTCCCTCC 59.837 45.833 0.00 0.00 0.00 4.30
6794 6990 3.386726 TCAATAACCATGTACTCCCTCCG 59.613 47.826 0.00 0.00 0.00 4.63
6795 6991 2.537633 TAACCATGTACTCCCTCCGT 57.462 50.000 0.00 0.00 0.00 4.69
6796 6992 1.652947 AACCATGTACTCCCTCCGTT 58.347 50.000 0.00 0.00 0.00 4.44
6797 6993 1.192428 ACCATGTACTCCCTCCGTTC 58.808 55.000 0.00 0.00 0.00 3.95
6798 6994 0.464452 CCATGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
6799 6995 0.464452 CATGTACTCCCTCCGTTCCC 59.536 60.000 0.00 0.00 0.00 3.97
6800 6996 0.042131 ATGTACTCCCTCCGTTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
6801 6997 0.178926 TGTACTCCCTCCGTTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
6802 6998 0.978907 GTACTCCCTCCGTTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
6803 6999 1.558294 GTACTCCCTCCGTTCCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
6804 7000 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.857152 GCGACTAAGCTTCATCAGACAG 59.143 50.000 0.00 0.00 0.00 3.51
39 40 4.984785 GTCATATGCGACTAAGCTTCATCA 59.015 41.667 0.00 0.00 38.13 3.07
47 48 2.293677 ACCGAGGTCATATGCGACTAAG 59.706 50.000 0.00 0.00 36.12 2.18
53 54 1.202417 AGTTCACCGAGGTCATATGCG 60.202 52.381 0.00 0.00 0.00 4.73
63 64 3.374058 ACAAAACTCACAAGTTCACCGAG 59.626 43.478 0.00 0.00 45.07 4.63
101 105 1.273886 GGAGGGTCAGGCGATAATCTC 59.726 57.143 0.00 0.00 0.00 2.75
102 106 1.133009 AGGAGGGTCAGGCGATAATCT 60.133 52.381 0.00 0.00 0.00 2.40
111 116 0.399091 TAGCATCCAGGAGGGTCAGG 60.399 60.000 9.58 0.00 38.11 3.86
115 120 0.327000 AAGCTAGCATCCAGGAGGGT 60.327 55.000 18.83 11.24 38.11 4.34
123 128 1.418334 TCCCAGAGAAGCTAGCATCC 58.582 55.000 18.83 8.75 0.00 3.51
143 148 1.743772 CGCGACCTGGGAAGATCATTT 60.744 52.381 0.00 0.00 0.00 2.32
144 149 0.179073 CGCGACCTGGGAAGATCATT 60.179 55.000 0.00 0.00 0.00 2.57
161 166 0.593128 ATAGAAATGCCGGCAATCGC 59.407 50.000 36.33 22.28 37.59 4.58
162 167 2.549754 AGAATAGAAATGCCGGCAATCG 59.450 45.455 36.33 0.00 38.88 3.34
164 169 4.460263 TGTAGAATAGAAATGCCGGCAAT 58.540 39.130 36.33 25.02 0.00 3.56
177 182 5.416083 TGGGTTGTCGTCAATGTAGAATAG 58.584 41.667 0.00 0.00 35.92 1.73
178 183 5.408880 TGGGTTGTCGTCAATGTAGAATA 57.591 39.130 0.00 0.00 35.92 1.75
179 184 4.280436 TGGGTTGTCGTCAATGTAGAAT 57.720 40.909 0.00 0.00 35.92 2.40
180 185 3.755112 TGGGTTGTCGTCAATGTAGAA 57.245 42.857 0.00 0.00 35.92 2.10
188 194 2.147958 GCAATAGTTGGGTTGTCGTCA 58.852 47.619 0.00 0.00 0.00 4.35
194 200 6.016276 AGACTGTAAAAGCAATAGTTGGGTTG 60.016 38.462 0.00 0.00 0.00 3.77
199 205 8.660373 CCTAAGAGACTGTAAAAGCAATAGTTG 58.340 37.037 0.00 0.00 0.00 3.16
204 210 7.719633 TGAAACCTAAGAGACTGTAAAAGCAAT 59.280 33.333 0.00 0.00 0.00 3.56
216 222 5.589050 ACAACCTTGTTGAAACCTAAGAGAC 59.411 40.000 13.46 0.00 38.47 3.36
251 257 2.159226 CGTTGCCGTCTCTAGGATTCTT 60.159 50.000 0.00 0.00 0.00 2.52
320 326 2.751806 GGCAGGTCCTCAAAGAAATCAG 59.248 50.000 0.00 0.00 0.00 2.90
330 336 0.112995 AAATTGCAGGCAGGTCCTCA 59.887 50.000 0.00 0.00 45.52 3.86
333 339 1.188863 ATGAAATTGCAGGCAGGTCC 58.811 50.000 0.00 0.00 0.00 4.46
337 343 5.657474 ACAAGAATATGAAATTGCAGGCAG 58.343 37.500 0.00 0.00 0.00 4.85
379 385 3.733443 AATAAAATCAGGCATTCCGGC 57.267 42.857 0.00 0.00 41.61 6.13
380 386 8.356657 TGTATTAAATAAAATCAGGCATTCCGG 58.643 33.333 0.00 0.00 37.47 5.14
381 387 9.912634 ATGTATTAAATAAAATCAGGCATTCCG 57.087 29.630 0.00 0.00 37.47 4.30
392 402 8.428852 GTCCCAAGGCCATGTATTAAATAAAAT 58.571 33.333 5.01 0.00 0.00 1.82
439 449 6.976349 CCATGATCCACAAACATAGAAACATG 59.024 38.462 0.00 0.00 32.28 3.21
446 456 7.916977 CACAATTACCATGATCCACAAACATAG 59.083 37.037 0.00 0.00 0.00 2.23
502 522 9.659830 GTGAACATAAACAAATTCTTTAGTCGT 57.340 29.630 0.00 0.00 0.00 4.34
511 531 8.751302 ATTTACCCGTGAACATAAACAAATTC 57.249 30.769 0.00 0.00 0.00 2.17
626 652 2.415608 GCGGAGGATGGTCGACAGA 61.416 63.158 18.91 3.10 0.00 3.41
629 655 4.570663 CGGCGGAGGATGGTCGAC 62.571 72.222 7.13 7.13 0.00 4.20
634 660 4.899239 GCAGACGGCGGAGGATGG 62.899 72.222 13.24 0.00 0.00 3.51
689 715 1.867233 CCTAATCCGAATGGCAGAACG 59.133 52.381 0.00 0.00 34.14 3.95
791 821 1.648467 GACGGCTTGTGATTGGAGGC 61.648 60.000 0.00 0.00 0.00 4.70
1127 1164 4.240175 AGCTTAGTAAGTATAGGCACGC 57.760 45.455 11.51 0.00 0.00 5.34
1130 1167 4.500887 CCGCAAGCTTAGTAAGTATAGGCA 60.501 45.833 11.51 0.00 0.00 4.75
1131 1168 3.988517 CCGCAAGCTTAGTAAGTATAGGC 59.011 47.826 11.51 7.64 0.00 3.93
1133 1170 3.988517 GCCCGCAAGCTTAGTAAGTATAG 59.011 47.826 11.51 1.52 0.00 1.31
1134 1171 3.243975 GGCCCGCAAGCTTAGTAAGTATA 60.244 47.826 11.51 0.00 0.00 1.47
1135 1172 2.484947 GGCCCGCAAGCTTAGTAAGTAT 60.485 50.000 11.51 0.00 0.00 2.12
1136 1173 1.134610 GGCCCGCAAGCTTAGTAAGTA 60.135 52.381 11.51 0.00 0.00 2.24
1138 1175 0.107654 AGGCCCGCAAGCTTAGTAAG 60.108 55.000 0.00 5.47 0.00 2.34
1139 1176 0.107848 GAGGCCCGCAAGCTTAGTAA 60.108 55.000 0.00 0.00 0.00 2.24
1167 1204 3.659089 AACAAGATCGACGCCGGGG 62.659 63.158 18.33 18.33 36.24 5.73
1168 1205 2.125673 AACAAGATCGACGCCGGG 60.126 61.111 2.18 0.00 36.24 5.73
1169 1206 1.140407 GAGAACAAGATCGACGCCGG 61.140 60.000 0.00 0.00 36.24 6.13
1170 1207 0.179161 AGAGAACAAGATCGACGCCG 60.179 55.000 0.00 0.00 37.07 6.46
1171 1208 1.272781 CAGAGAACAAGATCGACGCC 58.727 55.000 0.00 0.00 0.00 5.68
1172 1209 1.983972 ACAGAGAACAAGATCGACGC 58.016 50.000 0.00 0.00 0.00 5.19
1173 1210 4.681942 AGAAAACAGAGAACAAGATCGACG 59.318 41.667 0.00 0.00 0.00 5.12
1174 1211 5.119434 GGAGAAAACAGAGAACAAGATCGAC 59.881 44.000 0.00 0.00 0.00 4.20
1175 1212 5.230942 GGAGAAAACAGAGAACAAGATCGA 58.769 41.667 0.00 0.00 0.00 3.59
1176 1213 4.390297 GGGAGAAAACAGAGAACAAGATCG 59.610 45.833 0.00 0.00 0.00 3.69
1177 1214 4.390297 CGGGAGAAAACAGAGAACAAGATC 59.610 45.833 0.00 0.00 0.00 2.75
1178 1215 4.202367 ACGGGAGAAAACAGAGAACAAGAT 60.202 41.667 0.00 0.00 0.00 2.40
1179 1216 3.134081 ACGGGAGAAAACAGAGAACAAGA 59.866 43.478 0.00 0.00 0.00 3.02
1180 1217 3.248602 CACGGGAGAAAACAGAGAACAAG 59.751 47.826 0.00 0.00 0.00 3.16
1181 1218 3.118555 TCACGGGAGAAAACAGAGAACAA 60.119 43.478 0.00 0.00 0.00 2.83
1182 1219 2.432874 TCACGGGAGAAAACAGAGAACA 59.567 45.455 0.00 0.00 0.00 3.18
1183 1220 3.107642 TCACGGGAGAAAACAGAGAAC 57.892 47.619 0.00 0.00 0.00 3.01
1184 1221 4.351874 AATCACGGGAGAAAACAGAGAA 57.648 40.909 0.00 0.00 0.00 2.87
1185 1222 4.065088 CAAATCACGGGAGAAAACAGAGA 58.935 43.478 0.00 0.00 0.00 3.10
1186 1223 3.189287 CCAAATCACGGGAGAAAACAGAG 59.811 47.826 0.00 0.00 0.00 3.35
1187 1224 3.146066 CCAAATCACGGGAGAAAACAGA 58.854 45.455 0.00 0.00 0.00 3.41
1188 1225 2.351738 GCCAAATCACGGGAGAAAACAG 60.352 50.000 0.00 0.00 0.00 3.16
1189 1226 1.611491 GCCAAATCACGGGAGAAAACA 59.389 47.619 0.00 0.00 0.00 2.83
1190 1227 1.886542 AGCCAAATCACGGGAGAAAAC 59.113 47.619 0.00 0.00 0.00 2.43
1191 1228 2.286365 AGCCAAATCACGGGAGAAAA 57.714 45.000 0.00 0.00 0.00 2.29
1192 1229 2.159382 GAAGCCAAATCACGGGAGAAA 58.841 47.619 0.00 0.00 0.00 2.52
1193 1230 1.073125 TGAAGCCAAATCACGGGAGAA 59.927 47.619 0.00 0.00 0.00 2.87
1194 1231 0.690192 TGAAGCCAAATCACGGGAGA 59.310 50.000 0.00 0.00 0.00 3.71
1195 1232 0.804989 GTGAAGCCAAATCACGGGAG 59.195 55.000 0.00 0.00 37.98 4.30
1196 1233 2.941210 GTGAAGCCAAATCACGGGA 58.059 52.632 0.00 0.00 37.98 5.14
1200 1237 4.037923 TCCTGAAAAGTGAAGCCAAATCAC 59.962 41.667 0.00 0.00 45.94 3.06
1231 1268 5.743872 CGAGCAATTTAGGAAGCCAAATTAC 59.256 40.000 0.00 0.00 33.66 1.89
1232 1269 5.650266 TCGAGCAATTTAGGAAGCCAAATTA 59.350 36.000 0.00 0.00 33.66 1.40
1233 1270 4.462483 TCGAGCAATTTAGGAAGCCAAATT 59.538 37.500 0.00 0.00 35.30 1.82
1234 1271 4.016444 TCGAGCAATTTAGGAAGCCAAAT 58.984 39.130 0.00 0.00 0.00 2.32
1258 1296 2.510615 ACGTACGTGTTACTACGAGC 57.489 50.000 22.14 5.58 46.46 5.03
1279 1317 4.028993 AGGTCCGCATAGAAAGGAAAAA 57.971 40.909 0.00 0.00 35.60 1.94
1280 1318 3.713826 AGGTCCGCATAGAAAGGAAAA 57.286 42.857 0.00 0.00 35.60 2.29
1281 1319 3.713826 AAGGTCCGCATAGAAAGGAAA 57.286 42.857 0.00 0.00 35.60 3.13
1282 1320 3.606687 GAAAGGTCCGCATAGAAAGGAA 58.393 45.455 0.00 0.00 35.60 3.36
1283 1321 2.418197 CGAAAGGTCCGCATAGAAAGGA 60.418 50.000 0.00 0.00 0.00 3.36
1284 1322 1.933853 CGAAAGGTCCGCATAGAAAGG 59.066 52.381 0.00 0.00 0.00 3.11
1301 1339 0.534203 AAGCTTTCGAGGCAACCGAA 60.534 50.000 13.45 5.52 43.97 4.30
1312 1350 0.710017 GCAAATCCGCAAAGCTTTCG 59.290 50.000 9.23 15.09 0.00 3.46
1317 1355 1.196130 CGATCGCAAATCCGCAAAGC 61.196 55.000 0.26 0.00 0.00 3.51
1331 1369 8.848948 AAAGCATATCAGATAACTATCGATCG 57.151 34.615 9.36 9.36 37.76 3.69
1344 1387 5.963176 TGTTGAAGCAAAAGCATATCAGA 57.037 34.783 0.00 0.00 0.00 3.27
1361 1404 8.821686 ATACCAACCAGAATTCAATATGTTGA 57.178 30.769 18.72 0.03 42.41 3.18
1363 1406 9.920946 ACTATACCAACCAGAATTCAATATGTT 57.079 29.630 8.44 0.76 0.00 2.71
1368 1411 9.838339 CTCTTACTATACCAACCAGAATTCAAT 57.162 33.333 8.44 0.00 0.00 2.57
1369 1412 9.042450 TCTCTTACTATACCAACCAGAATTCAA 57.958 33.333 8.44 0.00 0.00 2.69
1370 1413 8.603898 TCTCTTACTATACCAACCAGAATTCA 57.396 34.615 8.44 0.00 0.00 2.57
1389 1432 1.342496 CTCGCCCATGCTCATCTCTTA 59.658 52.381 0.00 0.00 34.43 2.10
1391 1434 1.747145 CTCGCCCATGCTCATCTCT 59.253 57.895 0.00 0.00 34.43 3.10
1402 1445 0.618458 ATAAACTTGGAGCTCGCCCA 59.382 50.000 7.83 0.00 0.00 5.36
1404 1447 5.758784 AGTAAATATAAACTTGGAGCTCGCC 59.241 40.000 7.83 0.00 0.00 5.54
1456 1503 8.678199 TCTGCTACCATGATATTCTATAAGTCG 58.322 37.037 0.00 0.00 0.00 4.18
1462 1509 9.934784 ATCTAGTCTGCTACCATGATATTCTAT 57.065 33.333 0.00 0.00 0.00 1.98
1475 1522 3.438781 CCCATCTCGATCTAGTCTGCTAC 59.561 52.174 0.00 0.00 0.00 3.58
1482 1529 2.175202 GATGCCCCATCTCGATCTAGT 58.825 52.381 0.00 0.00 37.82 2.57
1486 1533 1.739562 GCGATGCCCCATCTCGATC 60.740 63.158 3.98 0.00 38.59 3.69
1489 1536 1.958205 GAAGCGATGCCCCATCTCG 60.958 63.158 3.98 0.00 38.59 4.04
1503 1550 0.889994 TGAACCACATGGCATGAAGC 59.110 50.000 32.74 16.53 44.65 3.86
1512 1559 1.128507 CGAATCCGTGTGAACCACATG 59.871 52.381 11.25 11.25 46.32 3.21
1514 1561 0.601576 CCGAATCCGTGTGAACCACA 60.602 55.000 0.00 0.00 44.78 4.17
1515 1562 0.601841 ACCGAATCCGTGTGAACCAC 60.602 55.000 0.00 0.00 40.89 4.16
1533 1580 2.137523 CTGCTGAAAATGCCAAACCAC 58.862 47.619 0.00 0.00 0.00 4.16
1544 1592 0.109153 TCTGCCTGCTCTGCTGAAAA 59.891 50.000 0.00 0.00 34.34 2.29
1550 1598 1.307097 CCTAATTCTGCCTGCTCTGC 58.693 55.000 0.00 0.00 0.00 4.26
1553 1601 1.475930 GGGACCTAATTCTGCCTGCTC 60.476 57.143 0.00 0.00 0.00 4.26
1555 1603 0.548510 AGGGACCTAATTCTGCCTGC 59.451 55.000 0.00 0.00 0.00 4.85
1556 1604 1.561542 ACAGGGACCTAATTCTGCCTG 59.438 52.381 13.58 13.58 33.41 4.85
1558 1606 3.391296 TGATACAGGGACCTAATTCTGCC 59.609 47.826 0.00 0.00 0.00 4.85
1562 1610 8.697507 AATTCATTGATACAGGGACCTAATTC 57.302 34.615 0.00 0.00 0.00 2.17
1574 1622 4.883585 GGGCACTCTGAATTCATTGATACA 59.116 41.667 8.96 0.00 0.00 2.29
1575 1623 4.883585 TGGGCACTCTGAATTCATTGATAC 59.116 41.667 8.96 0.00 0.00 2.24
1577 1625 3.972133 TGGGCACTCTGAATTCATTGAT 58.028 40.909 8.96 0.00 0.00 2.57
1614 1662 7.375053 TGCATTGGGTGAAATAGTAAAACTTC 58.625 34.615 0.00 0.00 0.00 3.01
1616 1664 6.909550 TGCATTGGGTGAAATAGTAAAACT 57.090 33.333 0.00 0.00 0.00 2.66
1618 1666 6.438741 TGGATGCATTGGGTGAAATAGTAAAA 59.561 34.615 0.00 0.00 0.00 1.52
1619 1667 5.954752 TGGATGCATTGGGTGAAATAGTAAA 59.045 36.000 0.00 0.00 0.00 2.01
1630 1678 1.941377 AATGTGTGGATGCATTGGGT 58.059 45.000 0.00 0.00 34.44 4.51
1649 1697 8.777413 GCTTGATCATTCATAGTTGCACTATAA 58.223 33.333 0.00 5.32 39.26 0.98
1654 1702 5.163683 ACAGCTTGATCATTCATAGTTGCAC 60.164 40.000 7.79 0.00 31.19 4.57
1668 1716 3.671702 GCCAAAGTAGCAACAGCTTGATC 60.672 47.826 0.00 0.00 39.77 2.92
1672 1720 1.691196 TGCCAAAGTAGCAACAGCTT 58.309 45.000 0.00 0.00 39.77 3.74
1675 1723 3.578688 GGAAATGCCAAAGTAGCAACAG 58.421 45.455 0.00 0.00 44.83 3.16
1680 1728 0.824109 GGGGGAAATGCCAAAGTAGC 59.176 55.000 0.00 0.00 38.95 3.58
1711 1759 3.315470 TGCTGTACGAATAGCGAGAGAAT 59.685 43.478 0.00 0.00 42.41 2.40
1713 1761 2.031807 GTGCTGTACGAATAGCGAGAGA 59.968 50.000 0.00 0.00 42.41 3.10
1720 1768 1.200483 CGGCTGTGCTGTACGAATAG 58.800 55.000 0.00 0.00 0.00 1.73
1782 1830 6.109359 ACCTTACAATGAACTATGACTCTGC 58.891 40.000 0.00 0.00 0.00 4.26
1834 1882 8.514330 AACTTAACAGTTGACACCAATAAGAA 57.486 30.769 0.00 0.00 42.05 2.52
1847 1895 7.746475 GCAATAGCTCACTAAACTTAACAGTTG 59.254 37.037 0.00 0.00 39.51 3.16
1967 2017 3.514645 GCCGAATGACTTCAATTGCAAT 58.485 40.909 5.99 5.99 0.00 3.56
1980 2030 2.325583 AAGAAATAGGCGCCGAATGA 57.674 45.000 23.20 5.58 0.00 2.57
1986 2036 5.277828 CCATACTGTAAAAGAAATAGGCGCC 60.278 44.000 21.89 21.89 0.00 6.53
1988 2038 7.280205 ACTTCCATACTGTAAAAGAAATAGGCG 59.720 37.037 12.20 0.00 0.00 5.52
2013 2063 9.190317 AGGAAATATTCATAACCCAGAAAGAAC 57.810 33.333 0.00 0.00 0.00 3.01
2026 2076 7.128109 TGGACTACCCACAAGGAAATATTCATA 59.872 37.037 0.00 0.00 40.82 2.15
2032 2082 5.251932 TCATTGGACTACCCACAAGGAAATA 59.748 40.000 0.00 0.00 46.62 1.40
2189 2239 3.011144 TGGGGGAATGAAGACATAAAGCA 59.989 43.478 0.00 0.00 35.50 3.91
2910 2964 7.039270 TGGAAAAACCTCAAGAAAAAGCTTAC 58.961 34.615 0.00 0.00 39.86 2.34
3016 3070 9.340695 CAAAACATACACATAAACGTTCATCAT 57.659 29.630 0.00 0.00 0.00 2.45
3017 3071 8.560374 TCAAAACATACACATAAACGTTCATCA 58.440 29.630 0.00 0.00 0.00 3.07
3018 3072 8.942669 TCAAAACATACACATAAACGTTCATC 57.057 30.769 0.00 0.00 0.00 2.92
3037 3091 6.717413 TCACAGTACGTACCAAAATCAAAAC 58.283 36.000 21.80 0.00 0.00 2.43
3151 3206 6.097915 AGTTCCTCGTATACAATATGTGGG 57.902 41.667 3.32 2.79 0.00 4.61
3220 3275 5.016831 TCTAGAGTGCAGTTATCCTTGTCA 58.983 41.667 0.00 0.00 0.00 3.58
3241 3296 8.757982 AGTCAAAATCATAATGCATACCTTCT 57.242 30.769 0.00 0.00 0.00 2.85
3278 3333 8.484641 AGTCATGACATAGTGAAATACAACAG 57.515 34.615 27.02 0.00 0.00 3.16
3285 3340 9.950496 AAGAAACTAGTCATGACATAGTGAAAT 57.050 29.630 27.02 16.09 30.97 2.17
3372 3468 0.930726 TCCCTGGAAACAAACACCCT 59.069 50.000 0.00 0.00 42.06 4.34
3373 3469 1.037493 GTCCCTGGAAACAAACACCC 58.963 55.000 0.00 0.00 42.06 4.61
3374 3470 2.067365 AGTCCCTGGAAACAAACACC 57.933 50.000 0.00 0.00 42.06 4.16
3375 3471 4.457466 TCTAAGTCCCTGGAAACAAACAC 58.543 43.478 0.00 0.00 42.06 3.32
3376 3472 4.445735 CCTCTAAGTCCCTGGAAACAAACA 60.446 45.833 0.00 0.00 42.06 2.83
3377 3473 4.072839 CCTCTAAGTCCCTGGAAACAAAC 58.927 47.826 0.00 0.00 42.06 2.93
3378 3474 3.073946 CCCTCTAAGTCCCTGGAAACAAA 59.926 47.826 0.00 0.00 42.06 2.83
3379 3475 2.642807 CCCTCTAAGTCCCTGGAAACAA 59.357 50.000 0.00 0.00 42.06 2.83
3380 3476 2.266279 CCCTCTAAGTCCCTGGAAACA 58.734 52.381 0.00 0.00 39.59 2.83
3381 3477 2.027100 CACCCTCTAAGTCCCTGGAAAC 60.027 54.545 0.00 0.00 0.00 2.78
3382 3478 2.266279 CACCCTCTAAGTCCCTGGAAA 58.734 52.381 0.00 0.00 0.00 3.13
3383 3479 1.151413 ACACCCTCTAAGTCCCTGGAA 59.849 52.381 0.00 0.00 0.00 3.53
3384 3480 0.790993 ACACCCTCTAAGTCCCTGGA 59.209 55.000 0.00 0.00 0.00 3.86
3385 3481 1.657804 AACACCCTCTAAGTCCCTGG 58.342 55.000 0.00 0.00 0.00 4.45
3386 3482 2.372172 ACAAACACCCTCTAAGTCCCTG 59.628 50.000 0.00 0.00 0.00 4.45
3387 3483 2.702748 ACAAACACCCTCTAAGTCCCT 58.297 47.619 0.00 0.00 0.00 4.20
3388 3484 3.503800 AACAAACACCCTCTAAGTCCC 57.496 47.619 0.00 0.00 0.00 4.46
3389 3485 3.819337 GGAAACAAACACCCTCTAAGTCC 59.181 47.826 0.00 0.00 0.00 3.85
3390 3486 4.457466 TGGAAACAAACACCCTCTAAGTC 58.543 43.478 0.00 0.00 37.44 3.01
3391 3487 4.461198 CTGGAAACAAACACCCTCTAAGT 58.539 43.478 0.00 0.00 42.06 2.24
3392 3488 3.821033 CCTGGAAACAAACACCCTCTAAG 59.179 47.826 0.00 0.00 42.06 2.18
3393 3489 3.435890 CCCTGGAAACAAACACCCTCTAA 60.436 47.826 0.00 0.00 42.06 2.10
3394 3490 2.107552 CCCTGGAAACAAACACCCTCTA 59.892 50.000 0.00 0.00 42.06 2.43
3395 3491 1.133482 CCCTGGAAACAAACACCCTCT 60.133 52.381 0.00 0.00 42.06 3.69
3465 3561 4.217767 GTCCCAATAAGTCCCTTGTGTTTC 59.782 45.833 0.00 0.00 0.00 2.78
4324 4420 4.324991 AACGAACCGAGGTGGGGC 62.325 66.667 0.00 0.00 44.64 5.80
4325 4421 2.047560 GAACGAACCGAGGTGGGG 60.048 66.667 0.00 0.00 44.64 4.96
4326 4422 1.374252 CAGAACGAACCGAGGTGGG 60.374 63.158 0.00 0.00 44.64 4.61
4327 4423 2.027625 GCAGAACGAACCGAGGTGG 61.028 63.158 0.00 0.00 46.41 4.61
4328 4424 2.027625 GGCAGAACGAACCGAGGTG 61.028 63.158 0.00 0.00 0.00 4.00
4329 4425 2.156051 GAGGCAGAACGAACCGAGGT 62.156 60.000 0.00 0.00 0.00 3.85
4330 4426 1.446272 GAGGCAGAACGAACCGAGG 60.446 63.158 0.00 0.00 0.00 4.63
4331 4427 1.801913 CGAGGCAGAACGAACCGAG 60.802 63.158 0.00 0.00 0.00 4.63
4332 4428 2.257371 CGAGGCAGAACGAACCGA 59.743 61.111 0.00 0.00 0.00 4.69
4333 4429 2.809601 CCGAGGCAGAACGAACCG 60.810 66.667 0.00 0.00 0.00 4.44
4334 4430 0.883370 AAACCGAGGCAGAACGAACC 60.883 55.000 0.00 0.00 0.00 3.62
4335 4431 0.234884 CAAACCGAGGCAGAACGAAC 59.765 55.000 0.00 0.00 0.00 3.95
4336 4432 0.179067 ACAAACCGAGGCAGAACGAA 60.179 50.000 0.00 0.00 0.00 3.85
4337 4433 0.179067 AACAAACCGAGGCAGAACGA 60.179 50.000 0.00 0.00 0.00 3.85
4338 4434 0.041312 CAACAAACCGAGGCAGAACG 60.041 55.000 0.00 0.00 0.00 3.95
4339 4435 0.317854 GCAACAAACCGAGGCAGAAC 60.318 55.000 0.00 0.00 0.00 3.01
4340 4436 0.749818 TGCAACAAACCGAGGCAGAA 60.750 50.000 0.00 0.00 0.00 3.02
4341 4437 1.153066 TGCAACAAACCGAGGCAGA 60.153 52.632 0.00 0.00 0.00 4.26
4342 4438 1.283793 CTGCAACAAACCGAGGCAG 59.716 57.895 0.00 0.00 44.91 4.85
4343 4439 2.844451 GCTGCAACAAACCGAGGCA 61.844 57.895 0.00 0.00 0.00 4.75
4344 4440 2.050077 GCTGCAACAAACCGAGGC 60.050 61.111 0.00 0.00 0.00 4.70
4345 4441 2.252260 CGCTGCAACAAACCGAGG 59.748 61.111 0.00 0.00 0.00 4.63
4346 4442 2.252260 CCGCTGCAACAAACCGAG 59.748 61.111 0.00 0.00 0.00 4.63
4347 4443 2.515057 ACCGCTGCAACAAACCGA 60.515 55.556 0.00 0.00 0.00 4.69
4348 4444 2.353376 CACCGCTGCAACAAACCG 60.353 61.111 0.00 0.00 0.00 4.44
4349 4445 2.658268 GCACCGCTGCAACAAACC 60.658 61.111 0.00 0.00 43.62 3.27
4350 4446 2.658268 GGCACCGCTGCAACAAAC 60.658 61.111 4.88 0.00 46.28 2.93
4351 4447 2.832661 AGGCACCGCTGCAACAAA 60.833 55.556 4.88 0.00 46.28 2.83
4352 4448 3.286751 GAGGCACCGCTGCAACAA 61.287 61.111 4.88 0.00 46.28 2.83
4355 4451 3.866379 ATTGGAGGCACCGCTGCAA 62.866 57.895 4.88 1.06 46.28 4.08
4356 4452 4.349503 ATTGGAGGCACCGCTGCA 62.350 61.111 4.88 0.00 46.28 4.41
4357 4453 3.512516 GATTGGAGGCACCGCTGC 61.513 66.667 0.00 0.00 43.41 5.25
4358 4454 3.197790 CGATTGGAGGCACCGCTG 61.198 66.667 0.00 0.00 42.61 5.18
4363 4459 4.467084 TCCGGCGATTGGAGGCAC 62.467 66.667 9.30 0.00 0.00 5.01
4364 4460 4.467084 GTCCGGCGATTGGAGGCA 62.467 66.667 9.30 0.00 35.82 4.75
4365 4461 4.467084 TGTCCGGCGATTGGAGGC 62.467 66.667 9.30 0.00 35.82 4.70
4366 4462 2.202932 CTGTCCGGCGATTGGAGG 60.203 66.667 9.30 0.00 35.82 4.30
4367 4463 2.202932 CCTGTCCGGCGATTGGAG 60.203 66.667 9.30 0.00 35.82 3.86
4376 4472 4.787280 AGGAGAGGGCCTGTCCGG 62.787 72.222 36.15 0.00 46.83 5.14
4377 4473 3.465403 CAGGAGAGGGCCTGTCCG 61.465 72.222 36.15 28.03 46.83 4.79
4685 4782 7.173218 CAGCTAGAAAAGTCCAAATCACAACTA 59.827 37.037 0.00 0.00 0.00 2.24
4686 4783 6.016777 CAGCTAGAAAAGTCCAAATCACAACT 60.017 38.462 0.00 0.00 0.00 3.16
4687 4784 6.145535 CAGCTAGAAAAGTCCAAATCACAAC 58.854 40.000 0.00 0.00 0.00 3.32
4736 4833 6.097356 TCGTCAATTCCAATCTAGTACACAC 58.903 40.000 0.00 0.00 0.00 3.82
4753 4850 2.162208 ACGAAAATGCAGCATCGTCAAT 59.838 40.909 15.27 2.47 44.43 2.57
4827 4924 4.032558 GTCCTTTTCCGCTTAGTTATGTCG 59.967 45.833 0.00 0.00 0.00 4.35
4859 4956 7.986085 AATGGGATAAGTATGCTGTCAATAC 57.014 36.000 0.00 0.00 0.00 1.89
4868 4965 9.087424 GAAGAAACAAAAATGGGATAAGTATGC 57.913 33.333 0.00 0.00 0.00 3.14
4936 5033 7.420184 TTTACATATAGTCCATGCAATGTCG 57.580 36.000 0.00 0.00 44.81 4.35
4988 5086 1.729586 ACCCAGGTTCAGTTAGAGCA 58.270 50.000 0.00 0.00 0.00 4.26
4989 5087 2.861147 AACCCAGGTTCAGTTAGAGC 57.139 50.000 0.00 0.00 32.09 4.09
4990 5088 5.469084 GTGTAAAACCCAGGTTCAGTTAGAG 59.531 44.000 1.78 0.00 37.35 2.43
4991 5089 5.131475 AGTGTAAAACCCAGGTTCAGTTAGA 59.869 40.000 1.78 0.00 37.35 2.10
4992 5090 5.374071 AGTGTAAAACCCAGGTTCAGTTAG 58.626 41.667 1.78 0.00 37.35 2.34
4993 5091 5.376756 AGTGTAAAACCCAGGTTCAGTTA 57.623 39.130 1.78 0.00 37.35 2.24
4994 5092 4.245251 AGTGTAAAACCCAGGTTCAGTT 57.755 40.909 1.78 0.00 37.35 3.16
4995 5093 3.945640 AGTGTAAAACCCAGGTTCAGT 57.054 42.857 1.78 0.00 37.35 3.41
4996 5094 6.238648 AGATAAGTGTAAAACCCAGGTTCAG 58.761 40.000 1.78 0.00 37.35 3.02
4997 5095 6.195600 AGATAAGTGTAAAACCCAGGTTCA 57.804 37.500 1.78 0.00 37.35 3.18
4998 5096 5.646793 GGAGATAAGTGTAAAACCCAGGTTC 59.353 44.000 1.78 0.00 37.35 3.62
4999 5097 5.073965 TGGAGATAAGTGTAAAACCCAGGTT 59.926 40.000 0.00 0.00 40.45 3.50
5000 5098 4.600111 TGGAGATAAGTGTAAAACCCAGGT 59.400 41.667 0.00 0.00 0.00 4.00
5001 5099 5.174037 TGGAGATAAGTGTAAAACCCAGG 57.826 43.478 0.00 0.00 0.00 4.45
5002 5100 5.648092 CCTTGGAGATAAGTGTAAAACCCAG 59.352 44.000 0.00 0.00 0.00 4.45
5003 5101 5.515886 CCCTTGGAGATAAGTGTAAAACCCA 60.516 44.000 0.00 0.00 0.00 4.51
5004 5102 4.948004 CCCTTGGAGATAAGTGTAAAACCC 59.052 45.833 0.00 0.00 0.00 4.11
5005 5103 5.812286 TCCCTTGGAGATAAGTGTAAAACC 58.188 41.667 0.00 0.00 0.00 3.27
5020 5118 1.821966 TACCTCAGCCCTCCCTTGGA 61.822 60.000 0.00 0.00 0.00 3.53
5021 5119 0.695803 ATACCTCAGCCCTCCCTTGG 60.696 60.000 0.00 0.00 0.00 3.61
5022 5120 0.471617 CATACCTCAGCCCTCCCTTG 59.528 60.000 0.00 0.00 0.00 3.61
5023 5121 1.348775 GCATACCTCAGCCCTCCCTT 61.349 60.000 0.00 0.00 0.00 3.95
5024 5122 1.768077 GCATACCTCAGCCCTCCCT 60.768 63.158 0.00 0.00 0.00 4.20
5025 5123 1.768077 AGCATACCTCAGCCCTCCC 60.768 63.158 0.00 0.00 0.00 4.30
5026 5124 1.449353 CAGCATACCTCAGCCCTCC 59.551 63.158 0.00 0.00 0.00 4.30
5027 5125 1.227793 GCAGCATACCTCAGCCCTC 60.228 63.158 0.00 0.00 0.00 4.30
5028 5126 2.750657 GGCAGCATACCTCAGCCCT 61.751 63.158 0.00 0.00 39.42 5.19
5029 5127 2.203266 GGCAGCATACCTCAGCCC 60.203 66.667 0.00 0.00 39.42 5.19
5030 5128 0.817229 GAAGGCAGCATACCTCAGCC 60.817 60.000 0.00 0.00 45.54 4.85
5031 5129 0.107508 TGAAGGCAGCATACCTCAGC 60.108 55.000 0.00 0.00 36.14 4.26
5032 5130 1.209019 ACTGAAGGCAGCATACCTCAG 59.791 52.381 5.82 5.82 46.26 3.35
5033 5131 1.279496 ACTGAAGGCAGCATACCTCA 58.721 50.000 0.00 0.00 46.26 3.86
5034 5132 2.409948 AACTGAAGGCAGCATACCTC 57.590 50.000 0.00 0.00 46.26 3.85
5035 5133 2.887151 AAACTGAAGGCAGCATACCT 57.113 45.000 0.00 0.00 46.26 3.08
5036 5134 3.756434 TGTAAAACTGAAGGCAGCATACC 59.244 43.478 0.00 0.00 46.26 2.73
5037 5135 4.455877 AGTGTAAAACTGAAGGCAGCATAC 59.544 41.667 0.00 0.00 46.26 2.39
5038 5136 4.651778 AGTGTAAAACTGAAGGCAGCATA 58.348 39.130 0.00 0.00 46.26 3.14
5055 5153 4.021456 TCTGGATCAAGCGAAGAAAGTGTA 60.021 41.667 0.00 0.00 0.00 2.90
5139 5247 4.677584 GTTAAACAACCACAGCATGACAA 58.322 39.130 0.00 0.00 39.69 3.18
5147 5255 2.113910 GGCACGTTAAACAACCACAG 57.886 50.000 0.00 0.00 0.00 3.66
5183 5291 2.858768 ACATGGGGTGTAATCAGGGATT 59.141 45.455 0.00 0.00 39.91 3.01
5192 5300 2.595750 CCAGGAAACATGGGGTGTAA 57.404 50.000 0.00 0.00 41.14 2.41
5210 5318 1.688772 TCTAGAGTCATACGCACCCC 58.311 55.000 0.00 0.00 0.00 4.95
5234 5342 3.055747 TGCCGACATCATGTTACACCTAA 60.056 43.478 0.00 0.00 0.00 2.69
5248 5356 0.385751 CTGACCGTATCTGCCGACAT 59.614 55.000 0.00 0.00 0.00 3.06
5267 5375 4.456911 TGTCCTTGAACATGCTCTCATTTC 59.543 41.667 0.00 0.00 0.00 2.17
5276 5384 4.937620 TCTGATAACTGTCCTTGAACATGC 59.062 41.667 0.00 0.00 0.00 4.06
5294 5402 9.228949 GCAATGATTTATCTGGATTAGTCTGAT 57.771 33.333 0.00 0.00 0.00 2.90
5295 5403 8.435187 AGCAATGATTTATCTGGATTAGTCTGA 58.565 33.333 0.00 0.00 0.00 3.27
5306 5414 5.936956 GGAGGTAGGAGCAATGATTTATCTG 59.063 44.000 0.00 0.00 0.00 2.90
5329 5440 0.037303 AGTCATGGCAGTGAACAGGG 59.963 55.000 0.00 0.00 0.00 4.45
5330 5441 1.808945 GAAGTCATGGCAGTGAACAGG 59.191 52.381 0.00 0.00 0.00 4.00
5331 5442 2.483106 CAGAAGTCATGGCAGTGAACAG 59.517 50.000 0.00 0.00 0.00 3.16
5332 5443 2.497138 CAGAAGTCATGGCAGTGAACA 58.503 47.619 0.00 0.00 0.00 3.18
5333 5444 1.808945 CCAGAAGTCATGGCAGTGAAC 59.191 52.381 0.00 0.00 0.00 3.18
5334 5445 1.421268 ACCAGAAGTCATGGCAGTGAA 59.579 47.619 0.00 0.00 41.87 3.18
5341 5452 3.415212 ACATCACAACCAGAAGTCATGG 58.585 45.455 0.00 0.00 43.87 3.66
5342 5453 4.083110 GGAACATCACAACCAGAAGTCATG 60.083 45.833 0.00 0.00 0.00 3.07
5344 5455 3.476552 GGAACATCACAACCAGAAGTCA 58.523 45.455 0.00 0.00 0.00 3.41
5350 5461 1.593196 ACACGGAACATCACAACCAG 58.407 50.000 0.00 0.00 0.00 4.00
5359 5470 1.133915 ACAAGACCCAACACGGAACAT 60.134 47.619 0.00 0.00 36.56 2.71
5373 5484 1.378531 TGACAGCACAACCACAAGAC 58.621 50.000 0.00 0.00 0.00 3.01
5385 5496 5.942236 AGAAGCATAGAAAAAGATGACAGCA 59.058 36.000 0.00 0.00 0.00 4.41
5435 5546 9.950680 ACATAGAAAAGTCATTTGTTTACACAG 57.049 29.630 0.00 0.00 33.22 3.66
5456 5567 8.604035 ACGTCTGCATTAAGATTGTTTACATAG 58.396 33.333 0.00 0.00 0.00 2.23
5458 5569 7.243487 CACGTCTGCATTAAGATTGTTTACAT 58.757 34.615 0.00 0.00 0.00 2.29
5459 5570 6.348132 CCACGTCTGCATTAAGATTGTTTACA 60.348 38.462 0.00 0.00 0.00 2.41
5460 5571 6.021596 CCACGTCTGCATTAAGATTGTTTAC 58.978 40.000 0.00 0.00 0.00 2.01
5461 5572 5.935206 TCCACGTCTGCATTAAGATTGTTTA 59.065 36.000 0.00 0.00 0.00 2.01
5465 5576 3.063997 GGTCCACGTCTGCATTAAGATTG 59.936 47.826 0.00 0.00 0.00 2.67
5466 5577 3.055094 AGGTCCACGTCTGCATTAAGATT 60.055 43.478 0.00 0.00 0.00 2.40
5467 5578 2.501723 AGGTCCACGTCTGCATTAAGAT 59.498 45.455 0.00 0.00 0.00 2.40
5471 5582 1.262417 TCAGGTCCACGTCTGCATTA 58.738 50.000 0.00 0.00 0.00 1.90
5473 5584 0.107993 CATCAGGTCCACGTCTGCAT 60.108 55.000 0.00 0.00 0.00 3.96
5474 5585 1.293179 CATCAGGTCCACGTCTGCA 59.707 57.895 0.00 0.00 0.00 4.41
5480 5668 0.462047 GTTAGCCCATCAGGTCCACG 60.462 60.000 0.00 0.00 38.26 4.94
5498 5686 5.473039 GTTCTGCAATATTTCAGGCAAAGT 58.527 37.500 14.03 0.00 35.59 2.66
5505 5693 4.361451 AAGCCGTTCTGCAATATTTCAG 57.639 40.909 8.62 8.62 0.00 3.02
5565 5753 4.336433 GCTTTGCTATTATGGAAGCTGACA 59.664 41.667 0.00 0.00 39.56 3.58
5638 5826 2.641305 GATATCAGAGCATGGATGGCC 58.359 52.381 0.00 0.00 0.00 5.36
5661 5849 1.539827 GTTCCCAAACATTAGCGCTGT 59.460 47.619 22.90 7.73 35.36 4.40
5684 5872 1.123861 AACTCCTCAGCCTCAGCACA 61.124 55.000 0.00 0.00 43.56 4.57
5717 5905 6.723298 TCTTTTACCTGCTTGAAATTCCAA 57.277 33.333 0.00 0.00 0.00 3.53
5727 5915 2.304761 TGACGGGATCTTTTACCTGCTT 59.695 45.455 0.00 0.00 36.12 3.91
5735 5923 2.880890 GCTATGCATGACGGGATCTTTT 59.119 45.455 10.16 0.00 0.00 2.27
5825 6013 9.248291 GTATGATCACAACACAATCTTTGTTTT 57.752 29.630 0.00 0.00 43.23 2.43
5899 6088 4.782691 TCTGACACTTGATTCCTGGGATTA 59.217 41.667 0.00 0.00 0.00 1.75
5939 6128 6.034591 ACTTATCTATCAAACACTTCCGACG 58.965 40.000 0.00 0.00 0.00 5.12
6028 6217 9.778741 CATGGCACGACCCTATATATATAAAAT 57.221 33.333 4.06 0.00 37.83 1.82
6029 6218 8.764558 ACATGGCACGACCCTATATATATAAAA 58.235 33.333 4.06 0.00 37.83 1.52
6030 6219 8.313944 ACATGGCACGACCCTATATATATAAA 57.686 34.615 4.06 0.00 37.83 1.40
6031 6220 7.255346 CGACATGGCACGACCCTATATATATAA 60.255 40.741 0.00 0.00 37.83 0.98
6032 6221 6.206048 CGACATGGCACGACCCTATATATATA 59.794 42.308 0.00 2.49 37.83 0.86
6193 6386 1.956477 GCCAACCCTTATCATTGCGAT 59.044 47.619 0.00 0.00 38.21 4.58
6276 6469 9.113838 AGATAGCACATATACAAAGTGGAAAAG 57.886 33.333 0.00 0.00 33.98 2.27
6358 6552 3.778718 GTGCGTGTAAATTAGAATGTGCG 59.221 43.478 0.00 0.00 0.00 5.34
6409 6603 7.914537 TTTGAATTTTGTTTTGCGTGTTTTT 57.085 24.000 0.00 0.00 0.00 1.94
6410 6604 7.645735 AGTTTTGAATTTTGTTTTGCGTGTTTT 59.354 25.926 0.00 0.00 0.00 2.43
6411 6605 7.112705 CAGTTTTGAATTTTGTTTTGCGTGTTT 59.887 29.630 0.00 0.00 0.00 2.83
6412 6606 6.576684 CAGTTTTGAATTTTGTTTTGCGTGTT 59.423 30.769 0.00 0.00 0.00 3.32
6413 6607 6.076557 CAGTTTTGAATTTTGTTTTGCGTGT 58.923 32.000 0.00 0.00 0.00 4.49
6414 6608 5.002375 GCAGTTTTGAATTTTGTTTTGCGTG 59.998 36.000 0.00 0.00 0.00 5.34
6415 6609 5.085390 GCAGTTTTGAATTTTGTTTTGCGT 58.915 33.333 0.00 0.00 0.00 5.24
6416 6610 5.323105 AGCAGTTTTGAATTTTGTTTTGCG 58.677 33.333 0.00 0.00 33.39 4.85
6438 6632 9.097257 CTTTTCTTCAGAGGATTCTTAAGCTAG 57.903 37.037 0.00 0.00 35.53 3.42
6470 6664 9.912634 CAAATTACAAGTATTCCTGTTGTGATT 57.087 29.630 0.00 0.00 40.26 2.57
6485 6679 8.891671 AATGTGCAAGAATTCAAATTACAAGT 57.108 26.923 8.44 0.00 0.00 3.16
6486 6680 9.801714 GAAATGTGCAAGAATTCAAATTACAAG 57.198 29.630 8.44 0.00 0.00 3.16
6614 6808 8.445493 GTGATTGCAAATTTTGAGGGAAAATAG 58.555 33.333 13.26 0.00 42.41 1.73
6616 6810 6.771749 TGTGATTGCAAATTTTGAGGGAAAAT 59.228 30.769 13.26 2.78 44.66 1.82
6619 6813 5.287674 TGTGATTGCAAATTTTGAGGGAA 57.712 34.783 13.26 0.53 0.00 3.97
6620 6814 4.952071 TGTGATTGCAAATTTTGAGGGA 57.048 36.364 13.26 0.00 0.00 4.20
6660 6854 6.832520 AATGTCACAACAATTAGGCATGTA 57.167 33.333 0.00 0.00 39.30 2.29
6661 6855 5.726980 AATGTCACAACAATTAGGCATGT 57.273 34.783 0.00 0.00 39.30 3.21
6671 6865 8.465999 AGACTGTTTTATCAAATGTCACAACAA 58.534 29.630 9.53 0.00 39.30 2.83
6676 6870 8.268738 GCAAAAGACTGTTTTATCAAATGTCAC 58.731 33.333 9.53 0.00 33.87 3.67
6691 6885 2.618709 GCTAACTGGTGCAAAAGACTGT 59.381 45.455 3.99 0.00 0.00 3.55
6716 6911 3.742433 ACTAAGATGCATCCGGAAGAG 57.258 47.619 23.06 12.92 0.00 2.85
6720 6915 5.047306 CAGGTATAACTAAGATGCATCCGGA 60.047 44.000 23.06 6.61 0.00 5.14
6758 6954 4.454161 TGGTTATTGACAATGGTCTGTTCG 59.546 41.667 11.05 0.00 44.61 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.