Multiple sequence alignment - TraesCS6B01G280200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G280200 chr6B 100.000 3278 0 0 1 3278 506384464 506381187 0.000000e+00 6054.0
1 TraesCS6B01G280200 chr6B 80.952 84 16 0 2352 2435 12652305 12652388 2.110000e-07 67.6
2 TraesCS6B01G280200 chr6D 89.910 1883 100 41 178 2043 318077769 318079578 0.000000e+00 2342.0
3 TraesCS6B01G280200 chr6D 92.178 652 39 5 2633 3276 318079972 318080619 0.000000e+00 911.0
4 TraesCS6B01G280200 chr6D 85.784 204 13 9 2310 2509 318079782 318079973 5.550000e-48 202.0
5 TraesCS6B01G280200 chr6D 88.889 135 9 5 2062 2192 318079638 318079770 9.410000e-36 161.0
6 TraesCS6B01G280200 chr6A 93.671 790 38 6 933 1716 455494983 455495766 0.000000e+00 1171.0
7 TraesCS6B01G280200 chr6A 90.578 658 27 16 257 909 455494361 455494988 0.000000e+00 839.0
8 TraesCS6B01G280200 chr6A 96.865 319 10 0 1725 2043 455496171 455496489 4.810000e-148 534.0
9 TraesCS6B01G280200 chr6A 88.520 331 26 10 2635 2959 455496895 455497219 1.100000e-104 390.0
10 TraesCS6B01G280200 chr6A 84.752 282 33 6 2995 3270 455641757 455642034 1.160000e-69 274.0
11 TraesCS6B01G280200 chr6A 91.257 183 11 4 1 181 455465388 455465567 9.090000e-61 244.0
12 TraesCS6B01G280200 chr6A 89.848 197 10 6 2316 2508 455496703 455496893 9.090000e-61 244.0
13 TraesCS6B01G280200 chr6A 87.407 135 12 4 2062 2192 455496555 455496688 2.040000e-32 150.0
14 TraesCS6B01G280200 chr6A 97.222 36 1 0 171 206 455488153 455488188 9.820000e-06 62.1
15 TraesCS6B01G280200 chr7A 93.985 133 8 0 2507 2639 511953908 511954040 5.550000e-48 202.0
16 TraesCS6B01G280200 chr7A 95.699 93 4 0 2204 2296 725202664 725202756 2.040000e-32 150.0
17 TraesCS6B01G280200 chr5B 94.574 129 7 0 2507 2635 340715835 340715707 1.990000e-47 200.0
18 TraesCS6B01G280200 chr5B 92.632 95 7 0 2202 2296 152514623 152514529 1.590000e-28 137.0
19 TraesCS6B01G280200 chr5B 84.884 86 13 0 2352 2437 533479439 533479524 1.620000e-13 87.9
20 TraesCS6B01G280200 chr3D 93.939 132 8 0 2504 2635 365000827 365000958 1.990000e-47 200.0
21 TraesCS6B01G280200 chr3D 94.565 92 5 0 2205 2296 44173764 44173673 3.410000e-30 143.0
22 TraesCS6B01G280200 chr2D 92.754 138 10 0 2501 2638 561025755 561025618 1.990000e-47 200.0
23 TraesCS6B01G280200 chr2D 90.000 60 6 0 1226 1285 527643323 527643382 9.750000e-11 78.7
24 TraesCS6B01G280200 chr4D 90.066 151 13 2 2487 2637 492804428 492804280 9.280000e-46 195.0
25 TraesCS6B01G280200 chr4D 89.865 148 14 1 2489 2635 15801003 15801150 4.320000e-44 189.0
26 TraesCS6B01G280200 chr4D 92.632 95 7 0 2202 2296 486525170 486525076 1.590000e-28 137.0
27 TraesCS6B01G280200 chrUn 90.972 144 12 1 2492 2635 396962987 396963129 3.340000e-45 193.0
28 TraesCS6B01G280200 chr5A 90.845 142 13 0 2508 2649 135538578 135538719 1.200000e-44 191.0
29 TraesCS6B01G280200 chr1D 90.909 143 11 2 2508 2649 494145352 494145211 1.200000e-44 191.0
30 TraesCS6B01G280200 chr3B 95.789 95 3 1 2202 2296 784492124 784492217 5.670000e-33 152.0
31 TraesCS6B01G280200 chr3B 95.789 95 3 1 2202 2296 784558343 784558436 5.670000e-33 152.0
32 TraesCS6B01G280200 chr1B 94.624 93 4 1 2204 2296 418557801 418557710 3.410000e-30 143.0
33 TraesCS6B01G280200 chr1A 92.708 96 6 1 2202 2296 270017014 270017109 1.590000e-28 137.0
34 TraesCS6B01G280200 chr2B 89.899 99 10 0 2205 2303 589883102 589883004 9.550000e-26 128.0
35 TraesCS6B01G280200 chr2B 90.000 60 6 0 1226 1285 624995638 624995697 9.750000e-11 78.7
36 TraesCS6B01G280200 chr2A 90.000 60 6 0 1226 1285 672426505 672426564 9.750000e-11 78.7
37 TraesCS6B01G280200 chr3A 100.000 29 0 0 1938 1966 107044438 107044410 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G280200 chr6B 506381187 506384464 3277 True 6054.000000 6054 100.000000 1 3278 1 chr6B.!!$R1 3277
1 TraesCS6B01G280200 chr6D 318077769 318080619 2850 False 904.000000 2342 89.190250 178 3276 4 chr6D.!!$F1 3098
2 TraesCS6B01G280200 chr6A 455494361 455497219 2858 False 554.666667 1171 91.148167 257 2959 6 chr6A.!!$F4 2702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.119358 AAGCTCCACCTCCCCTACTT 59.881 55.0 0.00 0.00 0.0 2.24 F
86 87 0.241213 TCTTCCTTCTCACGCGACAG 59.759 55.0 15.93 8.07 0.0 3.51 F
617 640 0.318107 CAGCTTTGTCTTTGGCGTGG 60.318 55.0 0.00 0.00 0.0 4.94 F
2220 2706 0.394352 ATCCTTGTGGGGATGTTCGC 60.394 55.0 0.00 0.00 43.7 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 1692 0.108472 CGTAACCCGGGAACTCCTTC 60.108 60.0 32.02 7.25 35.95 3.46 R
1658 1697 0.538584 GGAATCGTAACCCGGGAACT 59.461 55.0 32.02 13.90 37.11 3.01 R
2274 2760 0.459585 TTCGAGAGTACGCCAATGGC 60.460 55.0 15.52 15.52 46.75 4.40 R
3125 3622 0.252604 TCCCACCACCATACCCGTAA 60.253 55.0 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.056328 GGGGGTTGACTTCGCTGC 61.056 66.667 0.00 0.00 0.00 5.25
18 19 3.056328 GGGGTTGACTTCGCTGCC 61.056 66.667 0.00 0.00 0.00 4.85
19 20 3.423154 GGGTTGACTTCGCTGCCG 61.423 66.667 0.00 0.00 0.00 5.69
20 21 4.090057 GGTTGACTTCGCTGCCGC 62.090 66.667 0.00 0.00 0.00 6.53
21 22 3.044305 GTTGACTTCGCTGCCGCT 61.044 61.111 0.00 0.00 0.00 5.52
22 23 2.738521 TTGACTTCGCTGCCGCTC 60.739 61.111 0.00 0.00 0.00 5.03
27 28 4.435436 TTCGCTGCCGCTCGTCAT 62.435 61.111 0.00 0.00 0.00 3.06
30 31 3.558411 GCTGCCGCTCGTCATGTC 61.558 66.667 0.00 0.00 0.00 3.06
31 32 2.125952 CTGCCGCTCGTCATGTCA 60.126 61.111 0.00 0.00 0.00 3.58
32 33 2.432456 TGCCGCTCGTCATGTCAC 60.432 61.111 0.00 0.00 0.00 3.67
33 34 3.188786 GCCGCTCGTCATGTCACC 61.189 66.667 0.00 0.00 0.00 4.02
34 35 2.509336 CCGCTCGTCATGTCACCC 60.509 66.667 0.00 0.00 0.00 4.61
35 36 2.509336 CGCTCGTCATGTCACCCC 60.509 66.667 0.00 0.00 0.00 4.95
36 37 2.509336 GCTCGTCATGTCACCCCG 60.509 66.667 0.00 0.00 0.00 5.73
37 38 2.970639 CTCGTCATGTCACCCCGT 59.029 61.111 0.00 0.00 0.00 5.28
38 39 1.153823 CTCGTCATGTCACCCCGTC 60.154 63.158 0.00 0.00 0.00 4.79
39 40 1.595993 CTCGTCATGTCACCCCGTCT 61.596 60.000 0.00 0.00 0.00 4.18
40 41 1.183030 TCGTCATGTCACCCCGTCTT 61.183 55.000 0.00 0.00 0.00 3.01
41 42 0.736325 CGTCATGTCACCCCGTCTTC 60.736 60.000 0.00 0.00 0.00 2.87
42 43 0.391263 GTCATGTCACCCCGTCTTCC 60.391 60.000 0.00 0.00 0.00 3.46
43 44 1.447838 CATGTCACCCCGTCTTCCG 60.448 63.158 0.00 0.00 0.00 4.30
44 45 3.310860 ATGTCACCCCGTCTTCCGC 62.311 63.158 0.00 0.00 34.38 5.54
45 46 4.754667 GTCACCCCGTCTTCCGCC 62.755 72.222 0.00 0.00 34.38 6.13
47 48 4.452733 CACCCCGTCTTCCGCCTC 62.453 72.222 0.00 0.00 34.38 4.70
49 50 3.702048 CCCCGTCTTCCGCCTCAA 61.702 66.667 0.00 0.00 34.38 3.02
50 51 2.125512 CCCGTCTTCCGCCTCAAG 60.126 66.667 0.00 0.00 34.38 3.02
51 52 2.815647 CCGTCTTCCGCCTCAAGC 60.816 66.667 0.00 0.00 38.52 4.01
52 53 2.262915 CGTCTTCCGCCTCAAGCT 59.737 61.111 0.00 0.00 40.39 3.74
53 54 1.807573 CGTCTTCCGCCTCAAGCTC 60.808 63.158 0.00 0.00 40.39 4.09
54 55 1.448717 GTCTTCCGCCTCAAGCTCC 60.449 63.158 0.00 0.00 40.39 4.70
55 56 1.913262 TCTTCCGCCTCAAGCTCCA 60.913 57.895 0.00 0.00 40.39 3.86
56 57 1.743252 CTTCCGCCTCAAGCTCCAC 60.743 63.158 0.00 0.00 40.39 4.02
57 58 3.254024 TTCCGCCTCAAGCTCCACC 62.254 63.158 0.00 0.00 40.39 4.61
58 59 3.710722 CCGCCTCAAGCTCCACCT 61.711 66.667 0.00 0.00 40.39 4.00
59 60 2.125350 CGCCTCAAGCTCCACCTC 60.125 66.667 0.00 0.00 40.39 3.85
60 61 2.270527 GCCTCAAGCTCCACCTCC 59.729 66.667 0.00 0.00 38.99 4.30
61 62 2.993853 CCTCAAGCTCCACCTCCC 59.006 66.667 0.00 0.00 0.00 4.30
62 63 2.674220 CCTCAAGCTCCACCTCCCC 61.674 68.421 0.00 0.00 0.00 4.81
63 64 1.614824 CTCAAGCTCCACCTCCCCT 60.615 63.158 0.00 0.00 0.00 4.79
64 65 0.325671 CTCAAGCTCCACCTCCCCTA 60.326 60.000 0.00 0.00 0.00 3.53
65 66 0.617820 TCAAGCTCCACCTCCCCTAC 60.618 60.000 0.00 0.00 0.00 3.18
66 67 0.618968 CAAGCTCCACCTCCCCTACT 60.619 60.000 0.00 0.00 0.00 2.57
67 68 0.119358 AAGCTCCACCTCCCCTACTT 59.881 55.000 0.00 0.00 0.00 2.24
68 69 0.325765 AGCTCCACCTCCCCTACTTC 60.326 60.000 0.00 0.00 0.00 3.01
69 70 0.325765 GCTCCACCTCCCCTACTTCT 60.326 60.000 0.00 0.00 0.00 2.85
70 71 1.902141 GCTCCACCTCCCCTACTTCTT 60.902 57.143 0.00 0.00 0.00 2.52
71 72 2.112190 CTCCACCTCCCCTACTTCTTC 58.888 57.143 0.00 0.00 0.00 2.87
72 73 1.205055 CCACCTCCCCTACTTCTTCC 58.795 60.000 0.00 0.00 0.00 3.46
73 74 1.273896 CCACCTCCCCTACTTCTTCCT 60.274 57.143 0.00 0.00 0.00 3.36
74 75 2.552367 CACCTCCCCTACTTCTTCCTT 58.448 52.381 0.00 0.00 0.00 3.36
75 76 2.502130 CACCTCCCCTACTTCTTCCTTC 59.498 54.545 0.00 0.00 0.00 3.46
76 77 2.387510 ACCTCCCCTACTTCTTCCTTCT 59.612 50.000 0.00 0.00 0.00 2.85
77 78 3.035363 CCTCCCCTACTTCTTCCTTCTC 58.965 54.545 0.00 0.00 0.00 2.87
78 79 3.566775 CCTCCCCTACTTCTTCCTTCTCA 60.567 52.174 0.00 0.00 0.00 3.27
79 80 3.442076 TCCCCTACTTCTTCCTTCTCAC 58.558 50.000 0.00 0.00 0.00 3.51
80 81 2.166664 CCCCTACTTCTTCCTTCTCACG 59.833 54.545 0.00 0.00 0.00 4.35
81 82 2.417515 CCCTACTTCTTCCTTCTCACGC 60.418 54.545 0.00 0.00 0.00 5.34
82 83 2.520979 CTACTTCTTCCTTCTCACGCG 58.479 52.381 3.53 3.53 0.00 6.01
83 84 0.959553 ACTTCTTCCTTCTCACGCGA 59.040 50.000 15.93 0.00 0.00 5.87
84 85 1.336056 ACTTCTTCCTTCTCACGCGAC 60.336 52.381 15.93 0.00 0.00 5.19
85 86 0.671796 TTCTTCCTTCTCACGCGACA 59.328 50.000 15.93 0.00 0.00 4.35
86 87 0.241213 TCTTCCTTCTCACGCGACAG 59.759 55.000 15.93 8.07 0.00 3.51
87 88 1.347817 CTTCCTTCTCACGCGACAGC 61.348 60.000 15.93 0.00 40.74 4.40
97 98 3.488090 GCGACAGCGGCTTACACC 61.488 66.667 0.00 0.00 38.16 4.16
98 99 2.048597 CGACAGCGGCTTACACCA 60.049 61.111 0.00 0.00 0.00 4.17
99 100 1.666553 CGACAGCGGCTTACACCAA 60.667 57.895 0.00 0.00 0.00 3.67
100 101 1.019278 CGACAGCGGCTTACACCAAT 61.019 55.000 0.00 0.00 0.00 3.16
101 102 1.165270 GACAGCGGCTTACACCAATT 58.835 50.000 0.00 0.00 0.00 2.32
102 103 0.881118 ACAGCGGCTTACACCAATTG 59.119 50.000 0.00 0.00 0.00 2.32
103 104 1.164411 CAGCGGCTTACACCAATTGA 58.836 50.000 7.12 0.00 0.00 2.57
104 105 1.539388 CAGCGGCTTACACCAATTGAA 59.461 47.619 7.12 0.00 0.00 2.69
105 106 2.030363 CAGCGGCTTACACCAATTGAAA 60.030 45.455 7.12 0.00 0.00 2.69
106 107 2.625790 AGCGGCTTACACCAATTGAAAA 59.374 40.909 7.12 0.00 0.00 2.29
107 108 3.258123 AGCGGCTTACACCAATTGAAAAT 59.742 39.130 7.12 0.00 0.00 1.82
108 109 3.993736 GCGGCTTACACCAATTGAAAATT 59.006 39.130 7.12 0.00 0.00 1.82
109 110 4.091365 GCGGCTTACACCAATTGAAAATTC 59.909 41.667 7.12 0.00 0.00 2.17
110 111 5.226396 CGGCTTACACCAATTGAAAATTCA 58.774 37.500 7.12 0.00 34.92 2.57
111 112 5.345741 CGGCTTACACCAATTGAAAATTCAG 59.654 40.000 7.12 0.00 38.61 3.02
112 113 5.639082 GGCTTACACCAATTGAAAATTCAGG 59.361 40.000 7.12 0.00 38.61 3.86
113 114 6.223120 GCTTACACCAATTGAAAATTCAGGT 58.777 36.000 7.12 1.00 38.61 4.00
115 116 5.867903 ACACCAATTGAAAATTCAGGTGA 57.132 34.783 26.78 4.45 46.08 4.02
116 117 5.600696 ACACCAATTGAAAATTCAGGTGAC 58.399 37.500 26.78 0.00 46.08 3.67
117 118 5.363580 ACACCAATTGAAAATTCAGGTGACT 59.636 36.000 26.78 12.14 46.08 3.41
118 119 6.127083 ACACCAATTGAAAATTCAGGTGACTT 60.127 34.615 26.78 11.64 46.08 3.01
119 120 7.069331 ACACCAATTGAAAATTCAGGTGACTTA 59.931 33.333 26.78 2.36 46.08 2.24
120 121 7.382218 CACCAATTGAAAATTCAGGTGACTTAC 59.618 37.037 20.22 0.00 46.08 2.34
121 122 7.069331 ACCAATTGAAAATTCAGGTGACTTACA 59.931 33.333 7.12 0.00 40.21 2.41
122 123 7.925483 CCAATTGAAAATTCAGGTGACTTACAA 59.075 33.333 7.12 0.00 40.21 2.41
123 124 9.311916 CAATTGAAAATTCAGGTGACTTACAAA 57.688 29.630 0.00 0.00 40.21 2.83
127 128 8.296713 TGAAAATTCAGGTGACTTACAAATAGC 58.703 33.333 0.00 0.00 40.21 2.97
128 129 8.409358 AAAATTCAGGTGACTTACAAATAGCT 57.591 30.769 0.00 0.00 40.21 3.32
129 130 7.617041 AATTCAGGTGACTTACAAATAGCTC 57.383 36.000 0.00 0.00 40.21 4.09
130 131 4.744570 TCAGGTGACTTACAAATAGCTCG 58.255 43.478 0.00 0.00 40.21 5.03
131 132 4.219944 TCAGGTGACTTACAAATAGCTCGT 59.780 41.667 0.00 0.00 40.21 4.18
132 133 4.327357 CAGGTGACTTACAAATAGCTCGTG 59.673 45.833 0.00 0.00 40.21 4.35
133 134 3.062234 GGTGACTTACAAATAGCTCGTGC 59.938 47.826 0.07 0.07 40.05 5.34
134 135 2.921121 TGACTTACAAATAGCTCGTGCG 59.079 45.455 3.48 0.00 45.42 5.34
135 136 2.921754 GACTTACAAATAGCTCGTGCGT 59.078 45.455 3.48 0.00 45.42 5.24
136 137 3.323243 ACTTACAAATAGCTCGTGCGTT 58.677 40.909 3.48 0.74 45.42 4.84
137 138 3.744426 ACTTACAAATAGCTCGTGCGTTT 59.256 39.130 3.48 6.90 45.42 3.60
138 139 2.594529 ACAAATAGCTCGTGCGTTTG 57.405 45.000 26.61 26.61 45.72 2.93
139 140 1.871039 ACAAATAGCTCGTGCGTTTGT 59.129 42.857 27.48 27.48 46.85 2.83
140 141 3.715618 CAAATAGCTCGTGCGTTTGTA 57.284 42.857 23.17 6.54 45.42 2.41
141 142 4.060288 CAAATAGCTCGTGCGTTTGTAA 57.940 40.909 23.17 2.47 45.42 2.41
142 143 4.459606 CAAATAGCTCGTGCGTTTGTAAA 58.540 39.130 23.17 1.41 45.42 2.01
143 144 4.735662 AATAGCTCGTGCGTTTGTAAAA 57.264 36.364 3.48 0.00 45.42 1.52
144 145 2.378507 AGCTCGTGCGTTTGTAAAAC 57.621 45.000 3.48 0.00 45.42 2.43
145 146 1.666700 AGCTCGTGCGTTTGTAAAACA 59.333 42.857 3.48 0.00 45.42 2.83
146 147 2.096174 AGCTCGTGCGTTTGTAAAACAA 59.904 40.909 3.48 0.00 45.42 2.83
147 148 2.847133 GCTCGTGCGTTTGTAAAACAAA 59.153 40.909 1.21 1.21 44.91 2.83
148 149 4.906896 AGCTCGTGCGTTTGTAAAACAAAA 60.907 37.500 6.78 0.00 43.42 2.44
149 150 6.183732 AGCTCGTGCGTTTGTAAAACAAAAT 61.184 36.000 6.78 0.00 43.42 1.82
150 151 8.123224 AGCTCGTGCGTTTGTAAAACAAAATG 62.123 38.462 6.78 4.67 43.42 2.32
157 158 4.981389 TTGTAAAACAAAATGCATCGCC 57.019 36.364 0.00 0.00 34.76 5.54
158 159 3.982475 TGTAAAACAAAATGCATCGCCA 58.018 36.364 0.00 0.00 0.00 5.69
159 160 3.986572 TGTAAAACAAAATGCATCGCCAG 59.013 39.130 0.00 0.00 0.00 4.85
160 161 2.818130 AAACAAAATGCATCGCCAGT 57.182 40.000 0.00 0.00 0.00 4.00
161 162 2.068837 AACAAAATGCATCGCCAGTG 57.931 45.000 0.00 0.00 0.00 3.66
162 163 1.246649 ACAAAATGCATCGCCAGTGA 58.753 45.000 0.00 0.00 0.00 3.41
163 164 1.820519 ACAAAATGCATCGCCAGTGAT 59.179 42.857 0.00 0.00 0.00 3.06
164 165 2.190161 CAAAATGCATCGCCAGTGATG 58.810 47.619 15.28 15.28 46.78 3.07
165 166 1.753930 AAATGCATCGCCAGTGATGA 58.246 45.000 22.11 9.69 46.98 2.92
166 167 1.977056 AATGCATCGCCAGTGATGAT 58.023 45.000 22.11 11.24 46.98 2.45
167 168 1.235724 ATGCATCGCCAGTGATGATG 58.764 50.000 22.11 16.01 46.98 3.07
169 170 2.697819 CATCGCCAGTGATGATGCA 58.302 52.632 14.61 0.00 46.98 3.96
170 171 1.235724 CATCGCCAGTGATGATGCAT 58.764 50.000 14.61 0.00 46.98 3.96
171 172 2.419667 CATCGCCAGTGATGATGCATA 58.580 47.619 14.61 0.00 46.98 3.14
172 173 1.869774 TCGCCAGTGATGATGCATAC 58.130 50.000 0.00 0.00 0.00 2.39
173 174 0.870393 CGCCAGTGATGATGCATACC 59.130 55.000 0.00 0.00 0.00 2.73
174 175 1.811176 CGCCAGTGATGATGCATACCA 60.811 52.381 0.00 0.00 0.00 3.25
175 176 1.878088 GCCAGTGATGATGCATACCAG 59.122 52.381 0.00 0.00 0.00 4.00
176 177 2.747467 GCCAGTGATGATGCATACCAGT 60.747 50.000 0.00 0.00 0.00 4.00
179 180 4.753610 CCAGTGATGATGCATACCAGTTAG 59.246 45.833 0.00 0.00 0.00 2.34
192 193 6.516194 GCATACCAGTTAGTACGTACCATGAT 60.516 42.308 21.80 5.89 0.00 2.45
193 194 5.258456 ACCAGTTAGTACGTACCATGATG 57.742 43.478 21.80 13.74 0.00 3.07
206 207 8.138365 ACGTACCATGATGATAACACATTTAC 57.862 34.615 0.00 0.00 0.00 2.01
210 211 7.999679 ACCATGATGATAACACATTTACCAAG 58.000 34.615 0.00 0.00 0.00 3.61
216 217 8.806429 ATGATAACACATTTACCAAGTGATGA 57.194 30.769 0.00 0.00 37.05 2.92
236 237 3.948851 GATGCTTACATCGACGTAGTGA 58.051 45.455 0.00 0.00 42.31 3.41
237 238 4.537965 GATGCTTACATCGACGTAGTGAT 58.462 43.478 0.00 0.00 42.31 3.06
253 254 4.585955 AGTGATGTAGTAACCATAGCGG 57.414 45.455 0.00 0.00 42.50 5.52
338 360 5.139727 CCATGGTGGTTATGTAATGTGGAT 58.860 41.667 2.57 0.00 31.35 3.41
342 364 7.678207 TGGTGGTTATGTAATGTGGATAGTA 57.322 36.000 0.00 0.00 0.00 1.82
413 435 2.421424 AGGCGCAAAAGAGAATGATCAC 59.579 45.455 10.83 0.00 0.00 3.06
417 439 2.478539 GCAAAAGAGAATGATCACCGGC 60.479 50.000 0.00 0.00 0.00 6.13
418 440 2.044123 AAAGAGAATGATCACCGGCC 57.956 50.000 0.00 0.00 0.00 6.13
419 441 1.207791 AAGAGAATGATCACCGGCCT 58.792 50.000 0.00 0.00 0.00 5.19
420 442 0.755686 AGAGAATGATCACCGGCCTC 59.244 55.000 0.00 0.72 0.00 4.70
443 466 2.125673 GGATGTCGGTCGGTGTGG 60.126 66.667 0.00 0.00 0.00 4.17
444 467 2.642254 GGATGTCGGTCGGTGTGGA 61.642 63.158 0.00 0.00 0.00 4.02
445 468 1.515954 GATGTCGGTCGGTGTGGAT 59.484 57.895 0.00 0.00 0.00 3.41
446 469 0.806102 GATGTCGGTCGGTGTGGATG 60.806 60.000 0.00 0.00 0.00 3.51
487 510 1.620822 GTGGCTGGTTCAGGTTTCAT 58.379 50.000 0.00 0.00 31.21 2.57
534 557 2.954753 GCACACGGCCGAGTCTTTG 61.955 63.158 35.90 21.25 36.11 2.77
574 597 3.834610 ACGAATCGTCTCATCGTCTTTT 58.165 40.909 0.96 0.00 45.84 2.27
617 640 0.318107 CAGCTTTGTCTTTGGCGTGG 60.318 55.000 0.00 0.00 0.00 4.94
700 724 4.564769 CGCAAAAGAAGGCAAAAACTAACA 59.435 37.500 0.00 0.00 0.00 2.41
706 730 2.294074 AGGCAAAAACTAACACTCGCA 58.706 42.857 0.00 0.00 0.00 5.10
849 878 0.755686 ATCATCTTCCTCCGTCCAGC 59.244 55.000 0.00 0.00 0.00 4.85
1054 1087 1.810030 GACCAAGGATCGGACGCAC 60.810 63.158 0.00 0.00 0.00 5.34
1122 1155 1.669115 CCAAGCTCCCACACAGACG 60.669 63.158 0.00 0.00 0.00 4.18
1194 1230 2.174349 GTCGTCGTCGGCGTACTT 59.826 61.111 19.81 0.00 39.49 2.24
1362 1401 0.815734 CGTGGAACTCTCGGTACCAT 59.184 55.000 13.54 0.00 33.19 3.55
1483 1522 0.733223 GAAGACGGTCGTGGAAGAGC 60.733 60.000 0.16 0.00 35.48 4.09
1518 1557 4.443266 GCCAGCGGAGAGAGCGTT 62.443 66.667 0.00 0.00 40.04 4.84
1658 1697 1.285950 CGTCAGTCGTGCAGAAGGA 59.714 57.895 0.00 0.00 34.52 3.36
1665 1704 1.738099 CGTGCAGAAGGAGTTCCCG 60.738 63.158 0.00 0.00 40.87 5.14
1721 1763 2.444421 GTGTAACGAGGAGGAAGAGGA 58.556 52.381 0.00 0.00 0.00 3.71
1730 2165 0.634465 GAGGAAGAGGAGGAGGAGGT 59.366 60.000 0.00 0.00 0.00 3.85
1776 2211 0.471617 CCGATTGGGAAGAGGATGCT 59.528 55.000 0.00 0.00 38.47 3.79
1989 2424 3.371273 CCAAATTCAGGGAGCAGATCAGA 60.371 47.826 0.00 0.00 0.00 3.27
1998 2433 0.682532 AGCAGATCAGACGGCAGAGA 60.683 55.000 0.00 0.00 33.76 3.10
2008 2443 0.905357 ACGGCAGAGATTGTAGGCTT 59.095 50.000 0.00 0.00 0.00 4.35
2085 2567 5.057149 ACTTGCGATCTGTAAACTTCTGTT 58.943 37.500 0.00 0.00 38.16 3.16
2142 2628 6.765512 CCTTCCTGTATCATTTTCTTCTCTCC 59.234 42.308 0.00 0.00 0.00 3.71
2188 2674 5.116180 CGTTATTACAGCCTGGAAAGATGA 58.884 41.667 0.00 0.00 0.00 2.92
2192 2678 6.916360 ATTACAGCCTGGAAAGATGAAAAA 57.084 33.333 0.00 0.00 0.00 1.94
2208 2694 1.314730 AAAAACGACGGCATCCTTGT 58.685 45.000 0.00 0.00 0.00 3.16
2209 2695 0.591170 AAAACGACGGCATCCTTGTG 59.409 50.000 0.00 0.00 0.00 3.33
2210 2696 1.234615 AAACGACGGCATCCTTGTGG 61.235 55.000 0.00 0.00 0.00 4.17
2211 2697 2.819595 CGACGGCATCCTTGTGGG 60.820 66.667 0.00 0.00 0.00 4.61
2212 2698 2.438434 GACGGCATCCTTGTGGGG 60.438 66.667 0.00 0.00 35.33 4.96
2213 2699 2.933287 ACGGCATCCTTGTGGGGA 60.933 61.111 0.00 0.00 39.95 4.81
2214 2700 2.270874 GACGGCATCCTTGTGGGGAT 62.271 60.000 0.00 0.00 46.02 3.85
2219 2705 3.882131 ATCCTTGTGGGGATGTTCG 57.118 52.632 0.00 0.00 43.70 3.95
2220 2706 0.394352 ATCCTTGTGGGGATGTTCGC 60.394 55.000 0.00 0.00 43.70 4.70
2221 2707 1.303236 CCTTGTGGGGATGTTCGCA 60.303 57.895 0.00 0.00 0.00 5.10
2222 2708 0.680921 CCTTGTGGGGATGTTCGCAT 60.681 55.000 0.00 0.00 41.22 4.73
2233 2719 4.882671 GATGTTCGCATCCTACACAAAT 57.117 40.909 0.00 0.00 46.22 2.32
2234 2720 5.235305 GATGTTCGCATCCTACACAAATT 57.765 39.130 0.00 0.00 46.22 1.82
2235 2721 4.678509 TGTTCGCATCCTACACAAATTC 57.321 40.909 0.00 0.00 0.00 2.17
2236 2722 4.323417 TGTTCGCATCCTACACAAATTCT 58.677 39.130 0.00 0.00 0.00 2.40
2237 2723 4.759693 TGTTCGCATCCTACACAAATTCTT 59.240 37.500 0.00 0.00 0.00 2.52
2238 2724 4.944962 TCGCATCCTACACAAATTCTTG 57.055 40.909 0.00 0.00 38.61 3.02
2239 2725 8.916757 ATGTTCGCATCCTACACAAATTCTTGT 61.917 37.037 0.00 0.00 38.78 3.16
2240 2726 5.483811 TCGCATCCTACACAAATTCTTGTA 58.516 37.500 0.00 0.56 44.15 2.41
2241 2727 5.935206 TCGCATCCTACACAAATTCTTGTAA 59.065 36.000 1.88 0.00 44.15 2.41
2242 2728 6.428465 TCGCATCCTACACAAATTCTTGTAAA 59.572 34.615 1.88 0.00 44.15 2.01
2243 2729 7.120579 TCGCATCCTACACAAATTCTTGTAAAT 59.879 33.333 1.88 0.00 44.15 1.40
2244 2730 7.218773 CGCATCCTACACAAATTCTTGTAAATG 59.781 37.037 12.10 12.10 44.15 2.32
2245 2731 8.028938 GCATCCTACACAAATTCTTGTAAATGT 58.971 33.333 14.88 0.00 44.15 2.71
2246 2732 9.912634 CATCCTACACAAATTCTTGTAAATGTT 57.087 29.630 1.88 0.00 44.15 2.71
2253 2739 9.424659 CACAAATTCTTGTAAATGTTTTTCTGC 57.575 29.630 0.00 0.00 44.15 4.26
2254 2740 8.611757 ACAAATTCTTGTAAATGTTTTTCTGCC 58.388 29.630 0.00 0.00 44.14 4.85
2255 2741 8.829612 CAAATTCTTGTAAATGTTTTTCTGCCT 58.170 29.630 0.00 0.00 0.00 4.75
2256 2742 8.962884 AATTCTTGTAAATGTTTTTCTGCCTT 57.037 26.923 0.00 0.00 0.00 4.35
2257 2743 8.593492 ATTCTTGTAAATGTTTTTCTGCCTTC 57.407 30.769 0.00 0.00 0.00 3.46
2258 2744 7.346751 TCTTGTAAATGTTTTTCTGCCTTCT 57.653 32.000 0.00 0.00 0.00 2.85
2259 2745 8.458573 TCTTGTAAATGTTTTTCTGCCTTCTA 57.541 30.769 0.00 0.00 0.00 2.10
2260 2746 9.077885 TCTTGTAAATGTTTTTCTGCCTTCTAT 57.922 29.630 0.00 0.00 0.00 1.98
2270 2756 9.841880 GTTTTTCTGCCTTCTATAAAAGTAAGG 57.158 33.333 0.00 0.00 41.23 2.69
2271 2757 9.582648 TTTTTCTGCCTTCTATAAAAGTAAGGT 57.417 29.630 0.00 0.00 40.55 3.50
2274 2760 9.832445 TTCTGCCTTCTATAAAAGTAAGGTATG 57.168 33.333 0.00 0.00 40.55 2.39
2275 2761 7.931948 TCTGCCTTCTATAAAAGTAAGGTATGC 59.068 37.037 0.00 0.00 40.55 3.14
2276 2762 6.996282 TGCCTTCTATAAAAGTAAGGTATGCC 59.004 38.462 0.00 0.00 40.55 4.40
2277 2763 6.996282 GCCTTCTATAAAAGTAAGGTATGCCA 59.004 38.462 1.54 0.00 40.55 4.92
2278 2764 7.665974 GCCTTCTATAAAAGTAAGGTATGCCAT 59.334 37.037 1.54 0.00 40.55 4.40
2279 2765 9.574516 CCTTCTATAAAAGTAAGGTATGCCATT 57.425 33.333 1.54 0.00 34.92 3.16
2281 2767 8.918202 TCTATAAAAGTAAGGTATGCCATTGG 57.082 34.615 1.54 0.00 37.19 3.16
2291 2777 3.706140 GCCATTGGCGTACTCTCG 58.294 61.111 12.82 0.00 39.62 4.04
2292 2778 1.141019 GCCATTGGCGTACTCTCGA 59.859 57.895 12.82 0.00 39.62 4.04
2293 2779 0.459585 GCCATTGGCGTACTCTCGAA 60.460 55.000 12.82 0.00 39.62 3.71
2294 2780 2.004583 CCATTGGCGTACTCTCGAAA 57.995 50.000 0.00 0.00 0.00 3.46
2295 2781 2.343101 CCATTGGCGTACTCTCGAAAA 58.657 47.619 0.00 0.00 0.00 2.29
2296 2782 2.936498 CCATTGGCGTACTCTCGAAAAT 59.064 45.455 0.00 0.00 0.00 1.82
2297 2783 4.116961 CCATTGGCGTACTCTCGAAAATA 58.883 43.478 0.00 0.00 0.00 1.40
2298 2784 4.750098 CCATTGGCGTACTCTCGAAAATAT 59.250 41.667 0.00 0.00 0.00 1.28
2299 2785 5.924254 CCATTGGCGTACTCTCGAAAATATA 59.076 40.000 0.00 0.00 0.00 0.86
2300 2786 6.590292 CCATTGGCGTACTCTCGAAAATATAT 59.410 38.462 0.00 0.00 0.00 0.86
2304 2790 8.047413 TGGCGTACTCTCGAAAATATATATGA 57.953 34.615 0.00 0.00 0.00 2.15
2314 2800 7.577979 TCGAAAATATATATGAAAACCACGGC 58.422 34.615 0.00 0.00 0.00 5.68
2332 2818 3.194116 ACGGCTCATTCATTGCAATTCTT 59.806 39.130 9.83 0.00 0.00 2.52
2333 2819 4.178540 CGGCTCATTCATTGCAATTCTTT 58.821 39.130 9.83 0.00 0.00 2.52
2334 2820 5.105797 ACGGCTCATTCATTGCAATTCTTTA 60.106 36.000 9.83 0.00 0.00 1.85
2349 2835 6.237306 GCAATTCTTTAGTAGCATTTTCGCAC 60.237 38.462 0.00 0.00 0.00 5.34
2441 2927 9.762381 AATCAACTTTATAGGAAAATGTACCCA 57.238 29.630 0.00 0.00 0.00 4.51
2442 2928 9.762381 ATCAACTTTATAGGAAAATGTACCCAA 57.238 29.630 0.00 0.00 0.00 4.12
2482 2971 9.039870 AGAAAACGTGATAAGATCATCATCTTC 57.960 33.333 0.00 0.00 44.86 2.87
2517 3006 9.574458 CACATAGTATGAAATATACTTCCTCCG 57.426 37.037 17.13 0.00 36.38 4.63
2518 3007 9.310449 ACATAGTATGAAATATACTTCCTCCGT 57.690 33.333 17.13 0.00 36.38 4.69
2519 3008 9.790389 CATAGTATGAAATATACTTCCTCCGTC 57.210 37.037 3.91 0.00 36.38 4.79
2520 3009 7.229581 AGTATGAAATATACTTCCTCCGTCC 57.770 40.000 0.00 0.00 31.28 4.79
2521 3010 4.950205 TGAAATATACTTCCTCCGTCCC 57.050 45.455 0.00 0.00 0.00 4.46
2522 3011 4.291792 TGAAATATACTTCCTCCGTCCCA 58.708 43.478 0.00 0.00 0.00 4.37
2523 3012 4.717778 TGAAATATACTTCCTCCGTCCCAA 59.282 41.667 0.00 0.00 0.00 4.12
2524 3013 5.190132 TGAAATATACTTCCTCCGTCCCAAA 59.810 40.000 0.00 0.00 0.00 3.28
2525 3014 5.703730 AATATACTTCCTCCGTCCCAAAA 57.296 39.130 0.00 0.00 0.00 2.44
2526 3015 5.906772 ATATACTTCCTCCGTCCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
2527 3016 2.971901 ACTTCCTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
2528 3017 2.791655 ACTTCCTCCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
2529 3018 2.375509 ACTTCCTCCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
2530 3019 3.181433 ACTTCCTCCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
2531 3020 2.790433 TCCTCCGTCCCAAAATTCTTG 58.210 47.619 0.00 0.00 0.00 3.02
2532 3021 2.107552 TCCTCCGTCCCAAAATTCTTGT 59.892 45.455 0.00 0.00 0.00 3.16
2533 3022 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2534 3023 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2535 3024 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2536 3025 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2537 3026 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
2538 3027 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
2539 3028 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
2540 3029 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
2541 3030 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
2542 3031 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
2543 3032 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
2544 3033 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
2545 3034 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
2593 3082 5.871396 AGGTGACTTGATACATCCGTATT 57.129 39.130 0.00 0.00 36.25 1.89
2594 3083 6.235231 AGGTGACTTGATACATCCGTATTT 57.765 37.500 0.00 0.00 36.25 1.40
2595 3084 7.356089 AGGTGACTTGATACATCCGTATTTA 57.644 36.000 0.00 0.00 36.25 1.40
2596 3085 7.434492 AGGTGACTTGATACATCCGTATTTAG 58.566 38.462 0.00 0.00 36.25 1.85
2597 3086 7.287005 AGGTGACTTGATACATCCGTATTTAGA 59.713 37.037 0.00 0.00 36.25 2.10
2598 3087 7.381678 GGTGACTTGATACATCCGTATTTAGAC 59.618 40.741 0.00 0.00 38.48 2.59
2599 3088 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
2600 3089 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
2601 3090 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
2602 3091 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
2609 3098 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
2610 3099 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
2612 3101 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
2613 3102 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
2621 3110 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2622 3111 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2623 3112 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2624 3113 8.359642 CAAATCTAAGACAAGAATTTTGGGACA 58.640 33.333 5.68 0.00 28.49 4.02
2625 3114 7.693969 ATCTAAGACAAGAATTTTGGGACAG 57.306 36.000 5.68 0.00 42.39 3.51
2626 3115 6.837312 TCTAAGACAAGAATTTTGGGACAGA 58.163 36.000 5.68 0.00 42.39 3.41
2627 3116 7.461749 TCTAAGACAAGAATTTTGGGACAGAT 58.538 34.615 5.68 0.00 42.39 2.90
2628 3117 5.972107 AGACAAGAATTTTGGGACAGATG 57.028 39.130 5.68 0.00 42.39 2.90
2629 3118 4.768968 AGACAAGAATTTTGGGACAGATGG 59.231 41.667 5.68 0.00 42.39 3.51
2630 3119 4.739793 ACAAGAATTTTGGGACAGATGGA 58.260 39.130 5.68 0.00 42.39 3.41
2631 3120 4.768968 ACAAGAATTTTGGGACAGATGGAG 59.231 41.667 5.68 0.00 42.39 3.86
2632 3121 4.664688 AGAATTTTGGGACAGATGGAGT 57.335 40.909 0.00 0.00 42.39 3.85
2633 3122 5.779241 AGAATTTTGGGACAGATGGAGTA 57.221 39.130 0.00 0.00 42.39 2.59
2634 3123 6.332976 AGAATTTTGGGACAGATGGAGTAT 57.667 37.500 0.00 0.00 42.39 2.12
2635 3124 6.735556 AGAATTTTGGGACAGATGGAGTATT 58.264 36.000 0.00 0.00 42.39 1.89
2636 3125 7.184862 AGAATTTTGGGACAGATGGAGTATTT 58.815 34.615 0.00 0.00 42.39 1.40
2637 3126 7.340487 AGAATTTTGGGACAGATGGAGTATTTC 59.660 37.037 0.00 0.00 42.39 2.17
2638 3127 5.512942 TTTGGGACAGATGGAGTATTTCA 57.487 39.130 0.00 0.00 42.39 2.69
2639 3128 5.715439 TTGGGACAGATGGAGTATTTCAT 57.285 39.130 0.00 0.00 42.39 2.57
2640 3129 6.823286 TTGGGACAGATGGAGTATTTCATA 57.177 37.500 0.00 0.00 42.39 2.15
2641 3130 6.823286 TGGGACAGATGGAGTATTTCATAA 57.177 37.500 0.00 0.00 0.00 1.90
2642 3131 7.392766 TGGGACAGATGGAGTATTTCATAAT 57.607 36.000 0.00 0.00 0.00 1.28
2672 3161 4.016444 TCATGAGCCTAATTTGGTGTTCC 58.984 43.478 7.77 0.00 0.00 3.62
2896 3389 8.721019 AATGTTTTCACACATCAGTTGATTTT 57.279 26.923 0.00 0.00 36.30 1.82
2906 3403 7.148289 ACACATCAGTTGATTTTGCAGATAGAG 60.148 37.037 0.00 0.00 31.21 2.43
2907 3404 7.065443 CACATCAGTTGATTTTGCAGATAGAGA 59.935 37.037 0.00 0.00 31.21 3.10
2939 3436 2.579201 CAAGGTGGAGACGCGGAT 59.421 61.111 12.47 0.00 43.50 4.18
2953 3450 2.828868 GGATGATGTAGCCGGCCA 59.171 61.111 26.15 16.30 0.00 5.36
2982 3479 2.074729 ACCACTCGAAGATAGGGAGG 57.925 55.000 0.00 0.00 35.10 4.30
3003 3500 3.128242 GGAGACGACGATGAAAAGGAGTA 59.872 47.826 0.00 0.00 0.00 2.59
3004 3501 4.202030 GGAGACGACGATGAAAAGGAGTAT 60.202 45.833 0.00 0.00 0.00 2.12
3023 3520 1.344953 TGGGAGTTGACTGGTGCACT 61.345 55.000 17.98 0.00 0.00 4.40
3069 3566 5.163513 GTGCCAAAGAAGAACCATATGTTG 58.836 41.667 1.24 0.00 37.29 3.33
3110 3607 2.040606 ACTCCGGCAGGGTGGTAT 59.959 61.111 2.05 0.00 38.33 2.73
3112 3609 3.087253 TCCGGCAGGGTGGTATGG 61.087 66.667 2.05 0.00 38.33 2.74
3139 3636 1.133915 AGCCAATTACGGGTATGGTGG 60.134 52.381 0.00 0.00 34.17 4.61
3149 3646 1.520666 GTATGGTGGTGGGAGACGG 59.479 63.158 0.00 0.00 0.00 4.79
3167 3670 4.666253 TGCTTCAGGTGGCAGGCC 62.666 66.667 2.62 2.62 34.22 5.19
3215 3718 0.324943 TGGAAAGGAGGAAGAAGGCG 59.675 55.000 0.00 0.00 0.00 5.52
3224 3727 3.310860 GAAGAAGGCGGCGGGAGAA 62.311 63.158 9.78 0.00 0.00 2.87
3231 3734 1.745489 GCGGCGGGAGAATCAAAGT 60.745 57.895 9.78 0.00 36.25 2.66
3235 3738 2.483013 CGGCGGGAGAATCAAAGTATCA 60.483 50.000 0.00 0.00 36.25 2.15
3272 3775 8.401955 ACTAACAAATAATCCTCCCCTAAGAA 57.598 34.615 0.00 0.00 0.00 2.52
3276 3779 7.062957 ACAAATAATCCTCCCCTAAGAACATG 58.937 38.462 0.00 0.00 0.00 3.21
3277 3780 6.848562 AATAATCCTCCCCTAAGAACATGT 57.151 37.500 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.056328 GCAGCGAAGTCAACCCCC 61.056 66.667 0.00 0.00 0.00 5.40
1 2 3.056328 GGCAGCGAAGTCAACCCC 61.056 66.667 0.00 0.00 0.00 4.95
2 3 3.423154 CGGCAGCGAAGTCAACCC 61.423 66.667 0.00 0.00 0.00 4.11
3 4 4.090057 GCGGCAGCGAAGTCAACC 62.090 66.667 0.00 0.00 0.00 3.77
13 14 3.558411 GACATGACGAGCGGCAGC 61.558 66.667 4.24 0.00 45.58 5.25
14 15 2.125952 TGACATGACGAGCGGCAG 60.126 61.111 4.24 0.00 36.12 4.85
15 16 2.432456 GTGACATGACGAGCGGCA 60.432 61.111 0.00 0.00 37.65 5.69
16 17 3.188786 GGTGACATGACGAGCGGC 61.189 66.667 0.00 0.00 0.00 6.53
17 18 2.509336 GGGTGACATGACGAGCGG 60.509 66.667 0.00 0.00 0.00 5.52
18 19 2.509336 GGGGTGACATGACGAGCG 60.509 66.667 0.00 0.00 0.00 5.03
19 20 2.509336 CGGGGTGACATGACGAGC 60.509 66.667 0.00 0.00 0.00 5.03
20 21 1.153823 GACGGGGTGACATGACGAG 60.154 63.158 0.00 0.00 0.00 4.18
21 22 1.183030 AAGACGGGGTGACATGACGA 61.183 55.000 0.00 0.00 0.00 4.20
22 23 0.736325 GAAGACGGGGTGACATGACG 60.736 60.000 0.00 0.00 0.00 4.35
23 24 0.391263 GGAAGACGGGGTGACATGAC 60.391 60.000 0.00 0.00 0.00 3.06
24 25 1.884075 CGGAAGACGGGGTGACATGA 61.884 60.000 0.00 0.00 39.42 3.07
25 26 1.447838 CGGAAGACGGGGTGACATG 60.448 63.158 0.00 0.00 39.42 3.21
26 27 2.978824 CGGAAGACGGGGTGACAT 59.021 61.111 0.00 0.00 39.42 3.06
27 28 3.998672 GCGGAAGACGGGGTGACA 61.999 66.667 0.00 0.00 44.51 3.58
28 29 4.754667 GGCGGAAGACGGGGTGAC 62.755 72.222 0.00 0.00 44.51 3.67
43 44 2.270527 GGAGGTGGAGCTTGAGGC 59.729 66.667 0.00 0.00 42.19 4.70
44 45 2.674220 GGGGAGGTGGAGCTTGAGG 61.674 68.421 0.00 0.00 0.00 3.86
45 46 0.325671 TAGGGGAGGTGGAGCTTGAG 60.326 60.000 0.00 0.00 0.00 3.02
46 47 0.617820 GTAGGGGAGGTGGAGCTTGA 60.618 60.000 0.00 0.00 0.00 3.02
47 48 0.618968 AGTAGGGGAGGTGGAGCTTG 60.619 60.000 0.00 0.00 0.00 4.01
48 49 0.119358 AAGTAGGGGAGGTGGAGCTT 59.881 55.000 0.00 0.00 0.00 3.74
49 50 0.325765 GAAGTAGGGGAGGTGGAGCT 60.326 60.000 0.00 0.00 0.00 4.09
50 51 0.325765 AGAAGTAGGGGAGGTGGAGC 60.326 60.000 0.00 0.00 0.00 4.70
51 52 2.112190 GAAGAAGTAGGGGAGGTGGAG 58.888 57.143 0.00 0.00 0.00 3.86
52 53 1.273666 GGAAGAAGTAGGGGAGGTGGA 60.274 57.143 0.00 0.00 0.00 4.02
53 54 1.205055 GGAAGAAGTAGGGGAGGTGG 58.795 60.000 0.00 0.00 0.00 4.61
54 55 2.255770 AGGAAGAAGTAGGGGAGGTG 57.744 55.000 0.00 0.00 0.00 4.00
55 56 2.387510 AGAAGGAAGAAGTAGGGGAGGT 59.612 50.000 0.00 0.00 0.00 3.85
56 57 3.035363 GAGAAGGAAGAAGTAGGGGAGG 58.965 54.545 0.00 0.00 0.00 4.30
57 58 3.449377 GTGAGAAGGAAGAAGTAGGGGAG 59.551 52.174 0.00 0.00 0.00 4.30
58 59 3.442076 GTGAGAAGGAAGAAGTAGGGGA 58.558 50.000 0.00 0.00 0.00 4.81
59 60 2.166664 CGTGAGAAGGAAGAAGTAGGGG 59.833 54.545 0.00 0.00 0.00 4.79
60 61 2.417515 GCGTGAGAAGGAAGAAGTAGGG 60.418 54.545 0.00 0.00 0.00 3.53
61 62 2.732597 CGCGTGAGAAGGAAGAAGTAGG 60.733 54.545 0.00 0.00 0.00 3.18
62 63 2.161808 TCGCGTGAGAAGGAAGAAGTAG 59.838 50.000 5.77 0.00 0.00 2.57
63 64 2.095364 GTCGCGTGAGAAGGAAGAAGTA 60.095 50.000 5.77 0.00 0.00 2.24
64 65 0.959553 TCGCGTGAGAAGGAAGAAGT 59.040 50.000 5.77 0.00 0.00 3.01
65 66 1.335964 TGTCGCGTGAGAAGGAAGAAG 60.336 52.381 5.77 0.00 0.00 2.85
66 67 0.671796 TGTCGCGTGAGAAGGAAGAA 59.328 50.000 5.77 0.00 0.00 2.52
67 68 0.241213 CTGTCGCGTGAGAAGGAAGA 59.759 55.000 5.77 0.00 0.00 2.87
68 69 1.347817 GCTGTCGCGTGAGAAGGAAG 61.348 60.000 5.77 0.00 0.00 3.46
69 70 1.372997 GCTGTCGCGTGAGAAGGAA 60.373 57.895 5.77 0.00 0.00 3.36
70 71 2.258591 GCTGTCGCGTGAGAAGGA 59.741 61.111 5.77 0.00 0.00 3.36
80 81 3.488090 GGTGTAAGCCGCTGTCGC 61.488 66.667 0.00 0.00 0.00 5.19
81 82 1.019278 ATTGGTGTAAGCCGCTGTCG 61.019 55.000 0.00 0.00 0.00 4.35
82 83 1.135689 CAATTGGTGTAAGCCGCTGTC 60.136 52.381 0.00 0.00 0.00 3.51
83 84 0.881118 CAATTGGTGTAAGCCGCTGT 59.119 50.000 0.00 0.00 0.00 4.40
84 85 1.164411 TCAATTGGTGTAAGCCGCTG 58.836 50.000 5.42 0.00 0.00 5.18
85 86 1.904287 TTCAATTGGTGTAAGCCGCT 58.096 45.000 5.42 0.00 0.00 5.52
86 87 2.715737 TTTCAATTGGTGTAAGCCGC 57.284 45.000 5.42 0.00 0.00 6.53
87 88 5.226396 TGAATTTTCAATTGGTGTAAGCCG 58.774 37.500 5.42 0.00 33.55 5.52
88 89 5.639082 CCTGAATTTTCAATTGGTGTAAGCC 59.361 40.000 5.42 0.00 36.64 4.35
89 90 6.146021 CACCTGAATTTTCAATTGGTGTAAGC 59.854 38.462 16.37 0.00 41.97 3.09
90 91 7.382218 GTCACCTGAATTTTCAATTGGTGTAAG 59.618 37.037 20.65 5.24 44.71 2.34
91 92 7.069331 AGTCACCTGAATTTTCAATTGGTGTAA 59.931 33.333 20.65 8.02 44.71 2.41
92 93 6.549364 AGTCACCTGAATTTTCAATTGGTGTA 59.451 34.615 20.65 11.08 44.71 2.90
93 94 5.363580 AGTCACCTGAATTTTCAATTGGTGT 59.636 36.000 20.65 8.02 44.71 4.16
94 95 5.846203 AGTCACCTGAATTTTCAATTGGTG 58.154 37.500 17.66 17.66 45.27 4.17
95 96 6.484364 AAGTCACCTGAATTTTCAATTGGT 57.516 33.333 5.42 0.00 36.64 3.67
96 97 7.432869 TGTAAGTCACCTGAATTTTCAATTGG 58.567 34.615 5.42 0.00 36.64 3.16
97 98 8.870160 TTGTAAGTCACCTGAATTTTCAATTG 57.130 30.769 0.00 0.00 36.64 2.32
101 102 8.296713 GCTATTTGTAAGTCACCTGAATTTTCA 58.703 33.333 0.00 0.00 34.03 2.69
102 103 8.515414 AGCTATTTGTAAGTCACCTGAATTTTC 58.485 33.333 0.00 0.00 34.03 2.29
103 104 8.409358 AGCTATTTGTAAGTCACCTGAATTTT 57.591 30.769 0.00 0.00 34.03 1.82
104 105 7.148407 CGAGCTATTTGTAAGTCACCTGAATTT 60.148 37.037 0.00 0.00 34.03 1.82
105 106 6.313905 CGAGCTATTTGTAAGTCACCTGAATT 59.686 38.462 0.00 0.00 36.28 2.17
106 107 5.812642 CGAGCTATTTGTAAGTCACCTGAAT 59.187 40.000 0.00 0.00 0.00 2.57
107 108 5.168569 CGAGCTATTTGTAAGTCACCTGAA 58.831 41.667 0.00 0.00 0.00 3.02
108 109 4.219944 ACGAGCTATTTGTAAGTCACCTGA 59.780 41.667 0.00 0.00 0.00 3.86
109 110 4.327357 CACGAGCTATTTGTAAGTCACCTG 59.673 45.833 0.00 0.00 0.00 4.00
110 111 4.495422 CACGAGCTATTTGTAAGTCACCT 58.505 43.478 0.00 0.00 0.00 4.00
111 112 3.062234 GCACGAGCTATTTGTAAGTCACC 59.938 47.826 0.00 0.00 37.91 4.02
112 113 3.241678 CGCACGAGCTATTTGTAAGTCAC 60.242 47.826 2.73 0.00 39.10 3.67
113 114 2.921121 CGCACGAGCTATTTGTAAGTCA 59.079 45.455 2.73 0.00 39.10 3.41
114 115 2.921754 ACGCACGAGCTATTTGTAAGTC 59.078 45.455 2.73 0.00 39.10 3.01
115 116 2.955614 ACGCACGAGCTATTTGTAAGT 58.044 42.857 2.73 0.00 39.10 2.24
116 117 3.991605 AACGCACGAGCTATTTGTAAG 57.008 42.857 2.73 0.00 39.10 2.34
117 118 3.495377 ACAAACGCACGAGCTATTTGTAA 59.505 39.130 24.71 0.00 46.70 2.41
118 119 3.061322 ACAAACGCACGAGCTATTTGTA 58.939 40.909 24.71 0.00 46.70 2.41
119 120 1.871039 ACAAACGCACGAGCTATTTGT 59.129 42.857 22.23 22.23 45.23 2.83
120 121 2.594529 ACAAACGCACGAGCTATTTG 57.405 45.000 21.29 21.29 43.99 2.32
121 122 4.735662 TTTACAAACGCACGAGCTATTT 57.264 36.364 2.73 0.82 39.10 1.40
122 123 4.024725 TGTTTTACAAACGCACGAGCTATT 60.025 37.500 2.73 0.00 39.10 1.73
123 124 3.495377 TGTTTTACAAACGCACGAGCTAT 59.505 39.130 2.73 0.00 39.10 2.97
124 125 2.864946 TGTTTTACAAACGCACGAGCTA 59.135 40.909 2.73 0.00 39.10 3.32
125 126 1.666700 TGTTTTACAAACGCACGAGCT 59.333 42.857 2.73 0.00 39.10 4.09
126 127 2.093972 TGTTTTACAAACGCACGAGC 57.906 45.000 0.00 0.00 37.42 5.03
127 128 5.411222 CATTTTGTTTTACAAACGCACGAG 58.589 37.500 4.59 0.00 46.53 4.18
128 129 4.259451 GCATTTTGTTTTACAAACGCACGA 60.259 37.500 15.53 0.07 46.53 4.35
129 130 3.950803 GCATTTTGTTTTACAAACGCACG 59.049 39.130 15.53 0.00 46.53 5.34
130 131 4.886971 TGCATTTTGTTTTACAAACGCAC 58.113 34.783 17.68 5.98 46.53 5.34
132 133 4.832829 CGATGCATTTTGTTTTACAAACGC 59.167 37.500 0.00 14.35 46.53 4.84
133 134 4.832829 GCGATGCATTTTGTTTTACAAACG 59.167 37.500 0.00 5.68 46.53 3.60
134 135 5.136711 GGCGATGCATTTTGTTTTACAAAC 58.863 37.500 0.00 0.00 46.53 2.93
135 136 4.811024 TGGCGATGCATTTTGTTTTACAAA 59.189 33.333 0.00 1.10 45.37 2.83
136 137 4.371786 TGGCGATGCATTTTGTTTTACAA 58.628 34.783 0.00 0.00 36.11 2.41
137 138 3.982475 TGGCGATGCATTTTGTTTTACA 58.018 36.364 0.00 0.00 0.00 2.41
138 139 3.987220 ACTGGCGATGCATTTTGTTTTAC 59.013 39.130 0.00 0.00 0.00 2.01
139 140 3.986572 CACTGGCGATGCATTTTGTTTTA 59.013 39.130 0.00 0.00 0.00 1.52
140 141 2.801679 CACTGGCGATGCATTTTGTTTT 59.198 40.909 0.00 0.00 0.00 2.43
141 142 2.035704 TCACTGGCGATGCATTTTGTTT 59.964 40.909 0.00 0.00 0.00 2.83
142 143 1.612950 TCACTGGCGATGCATTTTGTT 59.387 42.857 0.00 0.00 0.00 2.83
143 144 1.246649 TCACTGGCGATGCATTTTGT 58.753 45.000 0.00 0.00 0.00 2.83
144 145 2.159352 TCATCACTGGCGATGCATTTTG 60.159 45.455 0.00 0.00 42.15 2.44
145 146 2.093890 TCATCACTGGCGATGCATTTT 58.906 42.857 0.00 0.00 42.15 1.82
146 147 1.753930 TCATCACTGGCGATGCATTT 58.246 45.000 0.00 0.00 42.15 2.32
147 148 1.607148 CATCATCACTGGCGATGCATT 59.393 47.619 0.00 0.00 42.15 3.56
148 149 1.235724 CATCATCACTGGCGATGCAT 58.764 50.000 0.00 0.00 42.15 3.96
149 150 2.697819 CATCATCACTGGCGATGCA 58.302 52.632 0.00 0.00 42.15 3.96
151 152 1.235724 ATGCATCATCACTGGCGATG 58.764 50.000 0.00 0.00 43.50 3.84
152 153 2.420642 GTATGCATCATCACTGGCGAT 58.579 47.619 0.19 0.00 0.00 4.58
153 154 1.541015 GGTATGCATCATCACTGGCGA 60.541 52.381 0.19 0.00 0.00 5.54
154 155 0.870393 GGTATGCATCATCACTGGCG 59.130 55.000 0.19 0.00 0.00 5.69
155 156 1.878088 CTGGTATGCATCATCACTGGC 59.122 52.381 0.19 0.00 0.00 4.85
156 157 3.204306 ACTGGTATGCATCATCACTGG 57.796 47.619 0.19 0.00 0.00 4.00
157 158 5.363101 ACTAACTGGTATGCATCATCACTG 58.637 41.667 0.19 0.00 0.00 3.66
158 159 5.620738 ACTAACTGGTATGCATCATCACT 57.379 39.130 0.19 0.00 0.00 3.41
159 160 5.402568 CGTACTAACTGGTATGCATCATCAC 59.597 44.000 0.19 0.00 0.00 3.06
160 161 5.068591 ACGTACTAACTGGTATGCATCATCA 59.931 40.000 0.19 0.00 33.40 3.07
161 162 5.529791 ACGTACTAACTGGTATGCATCATC 58.470 41.667 0.19 0.00 33.40 2.92
162 163 5.531122 ACGTACTAACTGGTATGCATCAT 57.469 39.130 0.19 0.00 33.40 2.45
163 164 4.994907 ACGTACTAACTGGTATGCATCA 57.005 40.909 0.19 0.00 33.40 3.07
164 165 5.218139 GGTACGTACTAACTGGTATGCATC 58.782 45.833 24.07 0.00 33.40 3.91
165 166 4.646040 TGGTACGTACTAACTGGTATGCAT 59.354 41.667 24.07 3.79 33.40 3.96
166 167 4.015764 TGGTACGTACTAACTGGTATGCA 58.984 43.478 24.07 7.17 33.40 3.96
167 168 4.637483 TGGTACGTACTAACTGGTATGC 57.363 45.455 24.07 4.66 33.40 3.14
168 169 6.381481 TCATGGTACGTACTAACTGGTATG 57.619 41.667 24.07 12.06 35.50 2.39
169 170 6.774170 TCATCATGGTACGTACTAACTGGTAT 59.226 38.462 24.07 3.86 0.00 2.73
170 171 6.121590 TCATCATGGTACGTACTAACTGGTA 58.878 40.000 24.07 1.72 0.00 3.25
171 172 4.951715 TCATCATGGTACGTACTAACTGGT 59.048 41.667 24.07 8.97 0.00 4.00
172 173 5.509716 TCATCATGGTACGTACTAACTGG 57.490 43.478 24.07 10.85 0.00 4.00
173 174 8.132995 TGTTATCATCATGGTACGTACTAACTG 58.867 37.037 24.07 14.75 0.00 3.16
174 175 8.133627 GTGTTATCATCATGGTACGTACTAACT 58.866 37.037 24.07 2.44 0.00 2.24
175 176 7.916977 TGTGTTATCATCATGGTACGTACTAAC 59.083 37.037 24.07 19.80 0.00 2.34
176 177 7.998580 TGTGTTATCATCATGGTACGTACTAA 58.001 34.615 24.07 13.88 0.00 2.24
179 180 7.709269 AATGTGTTATCATCATGGTACGTAC 57.291 36.000 17.56 17.56 0.00 3.67
192 193 8.676401 CATCATCACTTGGTAAATGTGTTATCA 58.324 33.333 0.00 0.00 33.82 2.15
193 194 7.645340 GCATCATCACTTGGTAAATGTGTTATC 59.355 37.037 0.00 0.00 33.82 1.75
216 217 4.290969 CATCACTACGTCGATGTAAGCAT 58.709 43.478 17.76 7.40 35.37 3.79
229 230 5.145059 CGCTATGGTTACTACATCACTACG 58.855 45.833 0.00 0.00 0.00 3.51
232 233 4.585955 CCGCTATGGTTACTACATCACT 57.414 45.455 0.00 0.00 0.00 3.41
260 264 7.552330 AGTTTTCAGCAAACAACATGGTAAATT 59.448 29.630 0.00 0.00 46.55 1.82
332 354 6.709397 CCGTATCTGTTACTCTACTATCCACA 59.291 42.308 0.00 0.00 0.00 4.17
338 360 4.747108 GCGTCCGTATCTGTTACTCTACTA 59.253 45.833 0.00 0.00 0.00 1.82
342 364 2.641305 AGCGTCCGTATCTGTTACTCT 58.359 47.619 0.00 0.00 0.00 3.24
401 423 0.755686 GAGGCCGGTGATCATTCTCT 59.244 55.000 1.90 0.00 0.00 3.10
413 435 4.647615 CATCCGCTACGAGGCCGG 62.648 72.222 0.00 0.00 40.78 6.13
417 439 2.331805 CCGACATCCGCTACGAGG 59.668 66.667 0.00 0.00 36.84 4.63
418 440 1.009900 GACCGACATCCGCTACGAG 60.010 63.158 0.00 0.00 36.84 4.18
419 441 2.816360 CGACCGACATCCGCTACGA 61.816 63.158 0.00 0.00 36.84 3.43
420 442 2.352001 CGACCGACATCCGCTACG 60.352 66.667 0.00 0.00 36.84 3.51
443 466 1.138247 CGCTTTGCCTTGCTCCATC 59.862 57.895 0.00 0.00 0.00 3.51
444 467 1.303561 TCGCTTTGCCTTGCTCCAT 60.304 52.632 0.00 0.00 0.00 3.41
445 468 2.112928 TCGCTTTGCCTTGCTCCA 59.887 55.556 0.00 0.00 0.00 3.86
446 469 2.563427 GTCGCTTTGCCTTGCTCC 59.437 61.111 0.00 0.00 0.00 4.70
534 557 1.515736 CGTCGGGCCGTAGAGAAAC 60.516 63.158 27.32 13.73 0.00 2.78
574 597 2.552743 TCTCGAGACAAGCGAAAAGAGA 59.447 45.455 12.08 0.00 37.32 3.10
654 677 4.270008 AGTATTTTGACCGGGGAAGATTG 58.730 43.478 6.32 0.00 0.00 2.67
700 724 0.537188 ATTCCGTCCAATCTGCGAGT 59.463 50.000 0.00 0.00 0.00 4.18
706 730 5.126067 CAACCTAATGATTCCGTCCAATCT 58.874 41.667 0.00 0.00 34.35 2.40
761 786 1.742831 GTGGTCGCTTTGGCATAATCA 59.257 47.619 0.00 0.00 38.60 2.57
849 878 4.767255 GTGGAGGACGGCTGGCTG 62.767 72.222 0.00 0.00 0.00 4.85
930 959 1.088340 AGAAGCTAGCATGCACGCAG 61.088 55.000 26.20 16.03 34.99 5.18
931 960 1.078918 AGAAGCTAGCATGCACGCA 60.079 52.632 26.20 7.41 34.99 5.24
932 961 1.640604 GAGAAGCTAGCATGCACGC 59.359 57.895 21.98 20.67 34.99 5.34
933 962 0.179089 AGGAGAAGCTAGCATGCACG 60.179 55.000 21.98 11.21 34.99 5.34
934 963 1.669779 CAAGGAGAAGCTAGCATGCAC 59.330 52.381 21.98 8.95 34.99 4.57
935 964 1.407851 CCAAGGAGAAGCTAGCATGCA 60.408 52.381 21.98 5.01 34.99 3.96
936 965 1.134280 TCCAAGGAGAAGCTAGCATGC 60.134 52.381 18.83 10.51 0.00 4.06
937 966 2.836262 CTCCAAGGAGAAGCTAGCATG 58.164 52.381 18.83 3.95 44.53 4.06
1185 1221 2.100631 CAGCAGGGAAAGTACGCCG 61.101 63.158 0.00 0.00 0.00 6.46
1187 1223 2.399356 GGCAGCAGGGAAAGTACGC 61.399 63.158 0.00 0.00 0.00 4.42
1191 1227 2.759795 GAGGGCAGCAGGGAAAGT 59.240 61.111 0.00 0.00 0.00 2.66
1518 1557 2.962569 CTGTCCGTCTCTTCGCCA 59.037 61.111 0.00 0.00 0.00 5.69
1646 1685 1.671742 GGGAACTCCTTCTGCACGA 59.328 57.895 0.00 0.00 35.95 4.35
1651 1690 1.066358 GTAACCCGGGAACTCCTTCTG 60.066 57.143 32.02 0.00 35.95 3.02
1652 1691 1.273759 GTAACCCGGGAACTCCTTCT 58.726 55.000 32.02 0.00 35.95 2.85
1653 1692 0.108472 CGTAACCCGGGAACTCCTTC 60.108 60.000 32.02 7.25 35.95 3.46
1658 1697 0.538584 GGAATCGTAACCCGGGAACT 59.461 55.000 32.02 13.90 37.11 3.01
1665 1704 1.227060 CGACCCGGAATCGTAACCC 60.227 63.158 17.17 0.00 34.84 4.11
1721 1763 1.547755 TCCTCCTCCACCTCCTCCT 60.548 63.158 0.00 0.00 0.00 3.69
1730 2165 1.230650 TCCTCCTCCTCCTCCTCCA 60.231 63.158 0.00 0.00 0.00 3.86
1776 2211 1.688735 GTCATCTCATCCGACCCATCA 59.311 52.381 0.00 0.00 0.00 3.07
1989 2424 0.905357 AAGCCTACAATCTCTGCCGT 59.095 50.000 0.00 0.00 0.00 5.68
2019 2454 1.154205 AATGCATGCCTACGTCGCTC 61.154 55.000 16.68 0.30 0.00 5.03
2060 2505 6.220930 ACAGAAGTTTACAGATCGCAAGTAA 58.779 36.000 0.00 0.00 39.48 2.24
2092 2574 5.007430 GCTCATGATGTTACACAGATGAAGG 59.993 44.000 0.00 0.00 33.29 3.46
2097 2579 3.457380 AGGGCTCATGATGTTACACAGAT 59.543 43.478 0.00 0.00 0.00 2.90
2101 2583 2.945668 GGAAGGGCTCATGATGTTACAC 59.054 50.000 0.00 0.00 0.00 2.90
2105 2591 1.637553 ACAGGAAGGGCTCATGATGTT 59.362 47.619 0.00 0.00 38.11 2.71
2142 2628 4.507756 GGCAACAGTTTAAAAGCTCCAAAG 59.492 41.667 0.00 0.00 0.00 2.77
2192 2678 1.671054 CCACAAGGATGCCGTCGTT 60.671 57.895 0.00 0.00 36.89 3.85
2193 2679 2.047274 CCACAAGGATGCCGTCGT 60.047 61.111 0.00 0.00 36.89 4.34
2194 2680 2.819595 CCCACAAGGATGCCGTCG 60.820 66.667 0.00 0.00 38.24 5.12
2195 2681 2.270874 ATCCCCACAAGGATGCCGTC 62.271 60.000 0.00 0.00 45.25 4.79
2196 2682 2.308722 ATCCCCACAAGGATGCCGT 61.309 57.895 0.00 0.00 45.25 5.68
2197 2683 2.597340 ATCCCCACAAGGATGCCG 59.403 61.111 0.00 0.00 45.25 5.69
2202 2688 1.002624 GCGAACATCCCCACAAGGA 60.003 57.895 0.00 0.00 41.18 3.36
2203 2689 0.680921 ATGCGAACATCCCCACAAGG 60.681 55.000 0.00 0.00 0.00 3.61
2204 2690 0.734889 GATGCGAACATCCCCACAAG 59.265 55.000 0.00 0.00 45.94 3.16
2205 2691 2.866872 GATGCGAACATCCCCACAA 58.133 52.632 0.00 0.00 45.94 3.33
2206 2692 4.635769 GATGCGAACATCCCCACA 57.364 55.556 0.00 0.00 45.94 4.17
2213 2699 4.943705 AGAATTTGTGTAGGATGCGAACAT 59.056 37.500 0.00 0.00 39.98 2.71
2214 2700 4.323417 AGAATTTGTGTAGGATGCGAACA 58.677 39.130 0.00 0.00 0.00 3.18
2215 2701 4.946784 AGAATTTGTGTAGGATGCGAAC 57.053 40.909 0.00 0.00 0.00 3.95
2216 2702 4.759693 ACAAGAATTTGTGTAGGATGCGAA 59.240 37.500 0.00 0.00 45.54 4.70
2217 2703 4.323417 ACAAGAATTTGTGTAGGATGCGA 58.677 39.130 0.00 0.00 45.54 5.10
2218 2704 4.685169 ACAAGAATTTGTGTAGGATGCG 57.315 40.909 0.00 0.00 45.54 4.73
2219 2705 8.028938 ACATTTACAAGAATTTGTGTAGGATGC 58.971 33.333 16.99 0.00 46.63 3.91
2220 2706 9.912634 AACATTTACAAGAATTTGTGTAGGATG 57.087 29.630 16.28 16.28 46.63 3.51
2227 2713 9.424659 GCAGAAAAACATTTACAAGAATTTGTG 57.575 29.630 3.33 0.00 46.63 3.33
2229 2715 8.829612 AGGCAGAAAAACATTTACAAGAATTTG 58.170 29.630 0.00 0.00 40.24 2.32
2230 2716 8.962884 AGGCAGAAAAACATTTACAAGAATTT 57.037 26.923 0.00 0.00 0.00 1.82
2231 2717 8.962884 AAGGCAGAAAAACATTTACAAGAATT 57.037 26.923 0.00 0.00 0.00 2.17
2232 2718 8.424133 AGAAGGCAGAAAAACATTTACAAGAAT 58.576 29.630 0.00 0.00 0.00 2.40
2233 2719 7.781056 AGAAGGCAGAAAAACATTTACAAGAA 58.219 30.769 0.00 0.00 0.00 2.52
2234 2720 7.346751 AGAAGGCAGAAAAACATTTACAAGA 57.653 32.000 0.00 0.00 0.00 3.02
2244 2730 9.841880 CCTTACTTTTATAGAAGGCAGAAAAAC 57.158 33.333 7.83 0.00 32.54 2.43
2245 2731 9.582648 ACCTTACTTTTATAGAAGGCAGAAAAA 57.417 29.630 7.83 0.00 41.92 1.94
2248 2734 9.832445 CATACCTTACTTTTATAGAAGGCAGAA 57.168 33.333 7.83 0.00 41.92 3.02
2249 2735 7.931948 GCATACCTTACTTTTATAGAAGGCAGA 59.068 37.037 7.83 0.00 41.92 4.26
2250 2736 7.173390 GGCATACCTTACTTTTATAGAAGGCAG 59.827 40.741 7.83 3.18 41.92 4.85
2251 2737 6.996282 GGCATACCTTACTTTTATAGAAGGCA 59.004 38.462 7.83 0.00 41.92 4.75
2252 2738 6.996282 TGGCATACCTTACTTTTATAGAAGGC 59.004 38.462 7.83 0.00 41.92 4.35
2253 2739 9.574516 AATGGCATACCTTACTTTTATAGAAGG 57.425 33.333 0.00 0.00 43.49 3.46
2255 2741 9.349713 CCAATGGCATACCTTACTTTTATAGAA 57.650 33.333 0.00 0.00 36.63 2.10
2256 2742 8.918202 CCAATGGCATACCTTACTTTTATAGA 57.082 34.615 0.00 0.00 36.63 1.98
2262 2748 8.762559 AGTACGCCAATGGCATACCTTACTTT 62.763 42.308 24.55 3.75 46.86 2.66
2263 2749 7.379205 AGTACGCCAATGGCATACCTTACTT 62.379 44.000 24.55 4.47 46.86 2.24
2264 2750 5.963904 AGTACGCCAATGGCATACCTTACT 61.964 45.833 24.55 15.57 46.86 2.24
2265 2751 3.743269 AGTACGCCAATGGCATACCTTAC 60.743 47.826 24.55 13.85 46.86 2.34
2266 2752 2.436542 AGTACGCCAATGGCATACCTTA 59.563 45.455 24.55 3.16 46.86 2.69
2267 2753 1.211949 AGTACGCCAATGGCATACCTT 59.788 47.619 24.55 6.65 46.86 3.50
2268 2754 0.837272 AGTACGCCAATGGCATACCT 59.163 50.000 24.55 10.99 46.86 3.08
2269 2755 1.202651 AGAGTACGCCAATGGCATACC 60.203 52.381 24.55 16.50 46.86 2.73
2274 2760 0.459585 TTCGAGAGTACGCCAATGGC 60.460 55.000 15.52 15.52 46.75 4.40
2275 2761 2.004583 TTTCGAGAGTACGCCAATGG 57.995 50.000 0.00 0.00 0.00 3.16
2276 2762 5.907197 ATATTTTCGAGAGTACGCCAATG 57.093 39.130 0.00 0.00 0.00 2.82
2277 2763 9.302345 CATATATATTTTCGAGAGTACGCCAAT 57.698 33.333 0.00 0.00 0.00 3.16
2278 2764 8.517056 TCATATATATTTTCGAGAGTACGCCAA 58.483 33.333 0.00 0.00 0.00 4.52
2279 2765 8.047413 TCATATATATTTTCGAGAGTACGCCA 57.953 34.615 0.00 0.00 0.00 5.69
2280 2766 8.906636 TTCATATATATTTTCGAGAGTACGCC 57.093 34.615 0.00 0.00 0.00 5.68
2287 2773 8.984764 CCGTGGTTTTCATATATATTTTCGAGA 58.015 33.333 0.00 0.00 0.00 4.04
2288 2774 7.744715 GCCGTGGTTTTCATATATATTTTCGAG 59.255 37.037 0.00 0.00 0.00 4.04
2289 2775 7.442969 AGCCGTGGTTTTCATATATATTTTCGA 59.557 33.333 0.00 0.00 0.00 3.71
2290 2776 7.581476 AGCCGTGGTTTTCATATATATTTTCG 58.419 34.615 0.00 0.00 0.00 3.46
2291 2777 8.564574 TGAGCCGTGGTTTTCATATATATTTTC 58.435 33.333 0.00 0.00 0.00 2.29
2292 2778 8.458573 TGAGCCGTGGTTTTCATATATATTTT 57.541 30.769 0.00 0.00 0.00 1.82
2293 2779 8.635765 ATGAGCCGTGGTTTTCATATATATTT 57.364 30.769 0.00 0.00 0.00 1.40
2294 2780 8.635765 AATGAGCCGTGGTTTTCATATATATT 57.364 30.769 0.00 0.00 30.53 1.28
2295 2781 7.882791 TGAATGAGCCGTGGTTTTCATATATAT 59.117 33.333 0.00 0.00 30.53 0.86
2296 2782 7.220740 TGAATGAGCCGTGGTTTTCATATATA 58.779 34.615 4.07 0.00 30.53 0.86
2297 2783 6.061441 TGAATGAGCCGTGGTTTTCATATAT 58.939 36.000 4.07 0.00 30.53 0.86
2298 2784 5.432645 TGAATGAGCCGTGGTTTTCATATA 58.567 37.500 4.07 0.00 30.53 0.86
2299 2785 4.269183 TGAATGAGCCGTGGTTTTCATAT 58.731 39.130 4.07 0.00 30.53 1.78
2300 2786 3.680490 TGAATGAGCCGTGGTTTTCATA 58.320 40.909 4.07 0.00 30.53 2.15
2304 2790 2.610232 GCAATGAATGAGCCGTGGTTTT 60.610 45.455 0.00 0.00 0.00 2.43
2307 2793 0.608856 TGCAATGAATGAGCCGTGGT 60.609 50.000 0.00 0.00 0.00 4.16
2308 2794 0.527113 TTGCAATGAATGAGCCGTGG 59.473 50.000 0.00 0.00 0.00 4.94
2312 2798 6.335777 ACTAAAGAATTGCAATGAATGAGCC 58.664 36.000 13.82 0.00 0.00 4.70
2314 2800 8.186163 TGCTACTAAAGAATTGCAATGAATGAG 58.814 33.333 13.82 10.53 0.00 2.90
2332 2818 5.080969 AGTAGGTGCGAAAATGCTACTAA 57.919 39.130 0.00 0.00 35.36 2.24
2333 2819 4.441079 GGAGTAGGTGCGAAAATGCTACTA 60.441 45.833 0.00 0.00 35.36 1.82
2334 2820 3.522553 GAGTAGGTGCGAAAATGCTACT 58.477 45.455 0.00 0.00 35.36 2.57
2457 2943 8.820933 TGAAGATGATGATCTTATCACGTTTTC 58.179 33.333 7.45 0.00 47.00 2.29
2505 2994 5.427481 AGAATTTTGGGACGGAGGAAGTATA 59.573 40.000 0.00 0.00 0.00 1.47
2506 2995 4.227527 AGAATTTTGGGACGGAGGAAGTAT 59.772 41.667 0.00 0.00 0.00 2.12
2507 2996 3.585732 AGAATTTTGGGACGGAGGAAGTA 59.414 43.478 0.00 0.00 0.00 2.24
2508 2997 2.375509 AGAATTTTGGGACGGAGGAAGT 59.624 45.455 0.00 0.00 0.00 3.01
2509 2998 3.073274 AGAATTTTGGGACGGAGGAAG 57.927 47.619 0.00 0.00 0.00 3.46
2512 3001 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2514 3003 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2515 3004 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
2516 3005 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
2517 3006 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
2518 3007 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
2519 3008 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
2559 3048 9.967451 TGTATCAAGTCACCTTTTAATATTGGA 57.033 29.630 0.00 0.00 0.00 3.53
2563 3052 9.273016 CGGATGTATCAAGTCACCTTTTAATAT 57.727 33.333 0.00 0.00 0.00 1.28
2564 3053 8.262227 ACGGATGTATCAAGTCACCTTTTAATA 58.738 33.333 0.00 0.00 0.00 0.98
2565 3054 7.110155 ACGGATGTATCAAGTCACCTTTTAAT 58.890 34.615 0.00 0.00 0.00 1.40
2566 3055 6.469410 ACGGATGTATCAAGTCACCTTTTAA 58.531 36.000 0.00 0.00 0.00 1.52
2567 3056 6.045072 ACGGATGTATCAAGTCACCTTTTA 57.955 37.500 0.00 0.00 0.00 1.52
2568 3057 4.906618 ACGGATGTATCAAGTCACCTTTT 58.093 39.130 0.00 0.00 0.00 2.27
2569 3058 4.553330 ACGGATGTATCAAGTCACCTTT 57.447 40.909 0.00 0.00 0.00 3.11
2570 3059 5.871396 ATACGGATGTATCAAGTCACCTT 57.129 39.130 0.00 0.00 36.56 3.50
2571 3060 5.871396 AATACGGATGTATCAAGTCACCT 57.129 39.130 0.00 0.00 40.42 4.00
2572 3061 7.381678 GTCTAAATACGGATGTATCAAGTCACC 59.618 40.741 0.00 0.00 40.42 4.02
2573 3062 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
2574 3063 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
2575 3064 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
2576 3065 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
2583 3072 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
2584 3073 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
2586 3075 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
2587 3076 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
2595 3084 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2596 3085 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2597 3086 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2598 3087 8.359642 TGTCCCAAAATTCTTGTCTTAGATTTG 58.640 33.333 0.00 0.00 29.84 2.32
2599 3088 8.477419 TGTCCCAAAATTCTTGTCTTAGATTT 57.523 30.769 0.00 0.00 0.00 2.17
2600 3089 7.944554 TCTGTCCCAAAATTCTTGTCTTAGATT 59.055 33.333 0.00 0.00 0.00 2.40
2601 3090 7.461749 TCTGTCCCAAAATTCTTGTCTTAGAT 58.538 34.615 0.00 0.00 0.00 1.98
2602 3091 6.837312 TCTGTCCCAAAATTCTTGTCTTAGA 58.163 36.000 0.00 0.00 0.00 2.10
2603 3092 7.362401 CCATCTGTCCCAAAATTCTTGTCTTAG 60.362 40.741 0.00 0.00 0.00 2.18
2604 3093 6.434028 CCATCTGTCCCAAAATTCTTGTCTTA 59.566 38.462 0.00 0.00 0.00 2.10
2605 3094 5.244626 CCATCTGTCCCAAAATTCTTGTCTT 59.755 40.000 0.00 0.00 0.00 3.01
2606 3095 4.768968 CCATCTGTCCCAAAATTCTTGTCT 59.231 41.667 0.00 0.00 0.00 3.41
2607 3096 4.766891 TCCATCTGTCCCAAAATTCTTGTC 59.233 41.667 0.00 0.00 0.00 3.18
2608 3097 4.739793 TCCATCTGTCCCAAAATTCTTGT 58.260 39.130 0.00 0.00 0.00 3.16
2609 3098 4.768968 ACTCCATCTGTCCCAAAATTCTTG 59.231 41.667 0.00 0.00 0.00 3.02
2610 3099 5.003096 ACTCCATCTGTCCCAAAATTCTT 57.997 39.130 0.00 0.00 0.00 2.52
2611 3100 4.664688 ACTCCATCTGTCCCAAAATTCT 57.335 40.909 0.00 0.00 0.00 2.40
2612 3101 7.122650 TGAAATACTCCATCTGTCCCAAAATTC 59.877 37.037 0.00 0.00 0.00 2.17
2613 3102 6.953520 TGAAATACTCCATCTGTCCCAAAATT 59.046 34.615 0.00 0.00 0.00 1.82
2614 3103 6.493166 TGAAATACTCCATCTGTCCCAAAAT 58.507 36.000 0.00 0.00 0.00 1.82
2615 3104 5.886609 TGAAATACTCCATCTGTCCCAAAA 58.113 37.500 0.00 0.00 0.00 2.44
2616 3105 5.512942 TGAAATACTCCATCTGTCCCAAA 57.487 39.130 0.00 0.00 0.00 3.28
2617 3106 5.715439 ATGAAATACTCCATCTGTCCCAA 57.285 39.130 0.00 0.00 0.00 4.12
2618 3107 6.823286 TTATGAAATACTCCATCTGTCCCA 57.177 37.500 0.00 0.00 0.00 4.37
2619 3108 9.793259 TTTATTATGAAATACTCCATCTGTCCC 57.207 33.333 0.00 0.00 0.00 4.46
2641 3130 9.205513 ACCAAATTAGGCTCATGAGATTTTTAT 57.794 29.630 27.04 8.08 0.00 1.40
2642 3131 8.469200 CACCAAATTAGGCTCATGAGATTTTTA 58.531 33.333 27.04 7.34 0.00 1.52
2752 3245 6.623743 GCTAAACGATTAAGCTTGATAACACG 59.376 38.462 9.86 8.73 0.00 4.49
2844 3337 5.796813 GGCAACTGATCAATAGTAAACGTC 58.203 41.667 0.00 0.00 0.00 4.34
2896 3389 3.753272 GCCACTTGTTTTCTCTATCTGCA 59.247 43.478 0.00 0.00 0.00 4.41
2906 3403 0.597377 CTTGGGCGCCACTTGTTTTC 60.597 55.000 30.85 7.78 30.78 2.29
2907 3404 1.441311 CTTGGGCGCCACTTGTTTT 59.559 52.632 30.85 0.00 30.78 2.43
2939 3436 1.146041 GTCATGGCCGGCTACATCA 59.854 57.895 28.56 16.15 0.00 3.07
2953 3450 1.189524 TTCGAGTGGTTCCCCGTCAT 61.190 55.000 0.00 0.00 0.00 3.06
2982 3479 3.219052 ACTCCTTTTCATCGTCGTCTC 57.781 47.619 0.00 0.00 0.00 3.36
3003 3500 0.250901 GTGCACCAGTCAACTCCCAT 60.251 55.000 5.22 0.00 0.00 4.00
3004 3501 1.148273 GTGCACCAGTCAACTCCCA 59.852 57.895 5.22 0.00 0.00 4.37
3023 3520 0.907230 TGACCCATCCATCACCACGA 60.907 55.000 0.00 0.00 0.00 4.35
3069 3566 2.822399 CGTGGCAGGTATCCCTCC 59.178 66.667 0.00 0.00 39.89 4.30
3112 3609 2.022762 CGTAATTGGCTTCGCGGC 59.977 61.111 6.13 1.57 38.97 6.53
3119 3616 1.133915 CCACCATACCCGTAATTGGCT 60.134 52.381 0.00 0.00 32.26 4.75
3125 3622 0.252604 TCCCACCACCATACCCGTAA 60.253 55.000 0.00 0.00 0.00 3.18
3127 3624 1.993391 CTCCCACCACCATACCCGT 60.993 63.158 0.00 0.00 0.00 5.28
3139 3636 1.374758 CTGAAGCACCGTCTCCCAC 60.375 63.158 0.00 0.00 0.00 4.61
3149 3646 3.368571 GCCTGCCACCTGAAGCAC 61.369 66.667 0.00 0.00 34.68 4.40
3195 3698 1.065126 CGCCTTCTTCCTCCTTTCCAT 60.065 52.381 0.00 0.00 0.00 3.41
3215 3718 2.872858 GTGATACTTTGATTCTCCCGCC 59.127 50.000 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.