Multiple sequence alignment - TraesCS6B01G278800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G278800 chr6B 100.000 4624 0 0 1 4624 504156994 504161617 0.000000e+00 8540.0
1 TraesCS6B01G278800 chr6B 84.685 111 17 0 21 131 193890153 193890043 1.360000e-20 111.0
2 TraesCS6B01G278800 chr6B 100.000 28 0 0 3257 3284 219571324 219571351 8.000000e-03 52.8
3 TraesCS6B01G278800 chr6D 95.325 1861 67 10 698 2554 319053573 319051729 0.000000e+00 2937.0
4 TraesCS6B01G278800 chr6D 97.741 1151 19 3 2634 3780 319051732 319050585 0.000000e+00 1975.0
5 TraesCS6B01G278800 chr6D 98.913 92 1 0 2550 2641 380781781 380781872 1.030000e-36 165.0
6 TraesCS6B01G278800 chr6D 100.000 29 0 0 3257 3285 124596697 124596725 2.000000e-03 54.7
7 TraesCS6B01G278800 chr6A 96.259 1764 50 9 800 2554 457020530 457018774 0.000000e+00 2878.0
8 TraesCS6B01G278800 chr6A 97.561 1148 24 2 2634 3780 457018777 457017633 0.000000e+00 1962.0
9 TraesCS6B01G278800 chr5A 94.569 847 44 1 3778 4624 545854417 545853573 0.000000e+00 1308.0
10 TraesCS6B01G278800 chr5A 98.947 95 1 0 2548 2642 523751674 523751768 2.210000e-38 171.0
11 TraesCS6B01G278800 chr5A 98.913 92 1 0 2551 2642 696989237 696989146 1.030000e-36 165.0
12 TraesCS6B01G278800 chr3A 90.662 846 65 3 3778 4622 29033877 29034709 0.000000e+00 1112.0
13 TraesCS6B01G278800 chr3B 85.529 850 116 7 3779 4624 474390517 474389671 0.000000e+00 881.0
14 TraesCS6B01G278800 chr7B 88.920 713 60 5 2 697 717552144 717552854 0.000000e+00 861.0
15 TraesCS6B01G278800 chr7B 92.717 508 36 1 3778 4284 688749100 688749607 0.000000e+00 732.0
16 TraesCS6B01G278800 chr7B 89.521 334 34 1 4291 4624 688752884 688753216 5.530000e-114 422.0
17 TraesCS6B01G278800 chr7B 74.526 475 83 28 99 555 476197697 476197243 6.150000e-39 172.0
18 TraesCS6B01G278800 chr7B 91.818 110 8 1 2530 2638 389007202 389007093 8.010000e-33 152.0
19 TraesCS6B01G278800 chr2B 78.135 965 179 19 1265 2213 614398819 614397871 6.670000e-163 584.0
20 TraesCS6B01G278800 chr2B 79.506 810 144 13 1265 2063 614503777 614502979 1.450000e-154 556.0
21 TraesCS6B01G278800 chr2B 73.951 453 84 24 1631 2063 614241867 614242305 8.010000e-33 152.0
22 TraesCS6B01G278800 chr2B 86.179 123 14 3 96 216 664126154 664126033 3.750000e-26 130.0
23 TraesCS6B01G278800 chr2A 77.593 964 186 17 1265 2213 666292869 666291921 1.450000e-154 556.0
24 TraesCS6B01G278800 chr2A 73.568 454 84 26 1631 2063 666021273 666021711 1.730000e-29 141.0
25 TraesCS6B01G278800 chr2D 77.469 972 187 19 1258 2213 521410911 521411866 1.880000e-153 553.0
26 TraesCS6B01G278800 chr2D 73.951 453 84 24 1631 2063 521568141 521567703 8.010000e-33 152.0
27 TraesCS6B01G278800 chr5B 98.684 228 3 0 4397 4624 41971833 41971606 5.570000e-109 405.0
28 TraesCS6B01G278800 chr5B 98.901 91 1 0 2549 2639 621231943 621232033 3.700000e-36 163.0
29 TraesCS6B01G278800 chr7A 98.947 95 1 0 2553 2647 204608033 204607939 2.210000e-38 171.0
30 TraesCS6B01G278800 chr7D 100.000 91 0 0 2550 2640 611865415 611865505 7.960000e-38 169.0
31 TraesCS6B01G278800 chr5D 97.938 97 2 0 2549 2645 369431544 369431640 7.960000e-38 169.0
32 TraesCS6B01G278800 chr4B 98.913 92 1 0 2549 2640 24565333 24565242 1.030000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G278800 chr6B 504156994 504161617 4623 False 8540 8540 100.000 1 4624 1 chr6B.!!$F2 4623
1 TraesCS6B01G278800 chr6D 319050585 319053573 2988 True 2456 2937 96.533 698 3780 2 chr6D.!!$R1 3082
2 TraesCS6B01G278800 chr6A 457017633 457020530 2897 True 2420 2878 96.910 800 3780 2 chr6A.!!$R1 2980
3 TraesCS6B01G278800 chr5A 545853573 545854417 844 True 1308 1308 94.569 3778 4624 1 chr5A.!!$R1 846
4 TraesCS6B01G278800 chr3A 29033877 29034709 832 False 1112 1112 90.662 3778 4622 1 chr3A.!!$F1 844
5 TraesCS6B01G278800 chr3B 474389671 474390517 846 True 881 881 85.529 3779 4624 1 chr3B.!!$R1 845
6 TraesCS6B01G278800 chr7B 717552144 717552854 710 False 861 861 88.920 2 697 1 chr7B.!!$F1 695
7 TraesCS6B01G278800 chr7B 688749100 688753216 4116 False 577 732 91.119 3778 4624 2 chr7B.!!$F2 846
8 TraesCS6B01G278800 chr2B 614397871 614398819 948 True 584 584 78.135 1265 2213 1 chr2B.!!$R1 948
9 TraesCS6B01G278800 chr2B 614502979 614503777 798 True 556 556 79.506 1265 2063 1 chr2B.!!$R2 798
10 TraesCS6B01G278800 chr2A 666291921 666292869 948 True 556 556 77.593 1265 2213 1 chr2A.!!$R1 948
11 TraesCS6B01G278800 chr2D 521410911 521411866 955 False 553 553 77.469 1258 2213 1 chr2D.!!$F1 955

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 679 0.031994 AAACATTTCAGCCGGTGCAC 59.968 50.0 8.8 8.8 41.13 4.57 F
694 695 0.100503 GCACCGGCCATACATGTTTC 59.899 55.0 2.3 0.0 0.00 2.78 F
696 697 0.395173 ACCGGCCATACATGTTTCCC 60.395 55.0 2.3 0.0 0.00 3.97 F
2565 2599 0.813184 CGCAAGTACTCCCTCCGTAA 59.187 55.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2640 2674 0.250513 ATCTTCTCCGACCACTTGGC 59.749 55.000 0.00 0.00 39.32 4.52 R
2690 2724 1.739562 GAAGACCAGCTGAGCGGTG 60.740 63.158 21.92 6.23 36.12 4.94 R
2792 2826 1.450312 GGTGATGTCGGGCTTGAGG 60.450 63.158 0.00 0.00 0.00 3.86 R
4445 7756 0.821711 GTGCCCTAAACAGCCACACA 60.822 55.000 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.060937 GCTGGTTGTAGCAATCGCG 59.939 57.895 0.00 0.00 45.49 5.87
82 83 0.102481 GCACCAGTCCGTCGATGTAT 59.898 55.000 3.52 0.00 0.00 2.29
116 117 3.136626 ACCAGTTCCAGCTTCTAGTTTGT 59.863 43.478 0.00 0.00 0.00 2.83
155 156 0.333993 TACCGGTTGTAGCTCCTCCT 59.666 55.000 15.04 0.00 0.00 3.69
157 158 1.153549 CGGTTGTAGCTCCTCCTGC 60.154 63.158 0.00 0.00 0.00 4.85
175 176 2.594303 TGCAGGTTCCAGCAACGG 60.594 61.111 6.46 0.00 37.90 4.44
197 198 0.591170 CCAACAACTTGTAGCACCCG 59.409 55.000 0.00 0.00 0.00 5.28
226 227 2.033299 CAGTTCCAGCATTTTGTGACGT 59.967 45.455 0.00 0.00 0.00 4.34
229 230 0.667993 CCAGCATTTTGTGACGTGGT 59.332 50.000 0.00 0.00 0.00 4.16
238 239 2.025589 TGTGACGTGGTTTGTAGCAA 57.974 45.000 0.00 0.00 32.77 3.91
242 243 0.515564 ACGTGGTTTGTAGCAATCGC 59.484 50.000 0.00 0.00 38.99 4.58
267 268 3.414700 GGTTCGAGCAGCGGTGTG 61.415 66.667 17.07 6.88 41.33 3.82
279 280 1.019278 GCGGTGTGTGACGATTCCAT 61.019 55.000 0.00 0.00 0.00 3.41
293 294 1.487300 TTCCATAACATCGACGGGGA 58.513 50.000 0.00 0.00 0.00 4.81
294 295 0.748450 TCCATAACATCGACGGGGAC 59.252 55.000 0.00 0.00 0.00 4.46
306 307 2.588439 GGGGACGGGAAAGGTAGC 59.412 66.667 0.00 0.00 0.00 3.58
307 308 2.295602 GGGGACGGGAAAGGTAGCA 61.296 63.158 0.00 0.00 0.00 3.49
308 309 1.078637 GGGACGGGAAAGGTAGCAC 60.079 63.158 0.00 0.00 0.00 4.40
309 310 1.551019 GGGACGGGAAAGGTAGCACT 61.551 60.000 0.00 0.00 0.00 4.40
310 311 1.188863 GGACGGGAAAGGTAGCACTA 58.811 55.000 0.00 0.00 0.00 2.74
311 312 1.551883 GGACGGGAAAGGTAGCACTAA 59.448 52.381 0.00 0.00 0.00 2.24
312 313 2.169978 GGACGGGAAAGGTAGCACTAAT 59.830 50.000 0.00 0.00 0.00 1.73
313 314 3.195661 GACGGGAAAGGTAGCACTAATG 58.804 50.000 0.00 0.00 0.00 1.90
314 315 2.093128 ACGGGAAAGGTAGCACTAATGG 60.093 50.000 0.00 0.00 0.00 3.16
315 316 2.093128 CGGGAAAGGTAGCACTAATGGT 60.093 50.000 0.00 0.00 40.47 3.55
317 318 3.279434 GGAAAGGTAGCACTAATGGTGG 58.721 50.000 0.00 0.00 45.44 4.61
318 319 3.279434 GAAAGGTAGCACTAATGGTGGG 58.721 50.000 0.00 0.00 45.44 4.61
319 320 0.546598 AGGTAGCACTAATGGTGGGC 59.453 55.000 0.00 0.00 45.44 5.36
320 321 0.814010 GGTAGCACTAATGGTGGGCG 60.814 60.000 0.00 0.00 45.44 6.13
321 322 0.107848 GTAGCACTAATGGTGGGCGT 60.108 55.000 0.00 0.00 45.44 5.68
322 323 0.616371 TAGCACTAATGGTGGGCGTT 59.384 50.000 0.00 0.00 45.44 4.84
323 324 0.676782 AGCACTAATGGTGGGCGTTC 60.677 55.000 0.00 0.00 45.44 3.95
324 325 1.654023 GCACTAATGGTGGGCGTTCC 61.654 60.000 0.00 0.00 45.44 3.62
325 326 0.322098 CACTAATGGTGGGCGTTCCA 60.322 55.000 0.00 0.00 44.79 3.53
332 333 2.598467 TGGGCGTTCCAACACCTT 59.402 55.556 0.00 0.00 43.84 3.50
333 334 1.527380 TGGGCGTTCCAACACCTTC 60.527 57.895 0.00 0.00 43.84 3.46
334 335 1.527380 GGGCGTTCCAACACCTTCA 60.527 57.895 0.00 0.00 31.82 3.02
335 336 0.893727 GGGCGTTCCAACACCTTCAT 60.894 55.000 0.00 0.00 31.82 2.57
336 337 0.240945 GGCGTTCCAACACCTTCATG 59.759 55.000 0.00 0.00 0.00 3.07
337 338 0.240945 GCGTTCCAACACCTTCATGG 59.759 55.000 0.00 0.00 42.93 3.66
351 352 5.567138 CCTTCATGGTTGGATGTAACTTC 57.433 43.478 0.00 0.00 0.00 3.01
352 353 5.256474 CCTTCATGGTTGGATGTAACTTCT 58.744 41.667 0.00 0.00 0.00 2.85
353 354 5.124457 CCTTCATGGTTGGATGTAACTTCTG 59.876 44.000 0.00 0.00 0.00 3.02
354 355 4.009675 TCATGGTTGGATGTAACTTCTGC 58.990 43.478 0.00 0.00 0.00 4.26
355 356 3.500448 TGGTTGGATGTAACTTCTGCA 57.500 42.857 0.00 0.00 0.00 4.41
356 357 3.411446 TGGTTGGATGTAACTTCTGCAG 58.589 45.455 7.63 7.63 0.00 4.41
357 358 2.749621 GGTTGGATGTAACTTCTGCAGG 59.250 50.000 15.13 0.36 0.00 4.85
358 359 3.559171 GGTTGGATGTAACTTCTGCAGGA 60.559 47.826 15.13 3.47 0.00 3.86
359 360 3.616956 TGGATGTAACTTCTGCAGGAG 57.383 47.619 21.11 21.11 0.00 3.69
360 361 2.237143 TGGATGTAACTTCTGCAGGAGG 59.763 50.000 25.98 12.62 0.00 4.30
361 362 2.284190 GATGTAACTTCTGCAGGAGGC 58.716 52.381 25.98 15.31 45.13 4.70
375 376 4.932105 AGGCGCCCCCAGCAAAAA 62.932 61.111 26.15 0.00 44.04 1.94
376 377 4.680237 GGCGCCCCCAGCAAAAAC 62.680 66.667 18.11 0.00 44.04 2.43
377 378 4.680237 GCGCCCCCAGCAAAAACC 62.680 66.667 0.00 0.00 44.04 3.27
378 379 2.917227 CGCCCCCAGCAAAAACCT 60.917 61.111 0.00 0.00 44.04 3.50
379 380 2.931068 CGCCCCCAGCAAAAACCTC 61.931 63.158 0.00 0.00 44.04 3.85
380 381 2.583441 GCCCCCAGCAAAAACCTCC 61.583 63.158 0.00 0.00 42.97 4.30
381 382 1.913262 CCCCCAGCAAAAACCTCCC 60.913 63.158 0.00 0.00 0.00 4.30
382 383 1.913262 CCCCAGCAAAAACCTCCCC 60.913 63.158 0.00 0.00 0.00 4.81
383 384 1.152355 CCCAGCAAAAACCTCCCCA 60.152 57.895 0.00 0.00 0.00 4.96
384 385 1.471829 CCCAGCAAAAACCTCCCCAC 61.472 60.000 0.00 0.00 0.00 4.61
385 386 0.469892 CCAGCAAAAACCTCCCCACT 60.470 55.000 0.00 0.00 0.00 4.00
386 387 0.675633 CAGCAAAAACCTCCCCACTG 59.324 55.000 0.00 0.00 0.00 3.66
387 388 0.555769 AGCAAAAACCTCCCCACTGA 59.444 50.000 0.00 0.00 0.00 3.41
388 389 1.147817 AGCAAAAACCTCCCCACTGAT 59.852 47.619 0.00 0.00 0.00 2.90
389 390 2.378547 AGCAAAAACCTCCCCACTGATA 59.621 45.455 0.00 0.00 0.00 2.15
390 391 2.755103 GCAAAAACCTCCCCACTGATAG 59.245 50.000 0.00 0.00 0.00 2.08
391 392 2.755103 CAAAAACCTCCCCACTGATAGC 59.245 50.000 0.00 0.00 0.00 2.97
392 393 1.668826 AAACCTCCCCACTGATAGCA 58.331 50.000 0.00 0.00 0.00 3.49
394 395 1.341156 ACCTCCCCACTGATAGCAGC 61.341 60.000 8.16 0.00 46.26 5.25
395 396 1.053264 CCTCCCCACTGATAGCAGCT 61.053 60.000 8.16 0.00 46.26 4.24
396 397 0.392336 CTCCCCACTGATAGCAGCTC 59.608 60.000 8.16 0.00 46.26 4.09
397 398 1.068753 CCCCACTGATAGCAGCTCG 59.931 63.158 8.16 0.00 46.26 5.03
398 399 1.680522 CCCCACTGATAGCAGCTCGT 61.681 60.000 8.16 0.00 46.26 4.18
399 400 0.249238 CCCACTGATAGCAGCTCGTC 60.249 60.000 8.16 0.00 46.26 4.20
400 401 0.249238 CCACTGATAGCAGCTCGTCC 60.249 60.000 8.16 0.00 46.26 4.79
401 402 0.457443 CACTGATAGCAGCTCGTCCA 59.543 55.000 8.16 0.00 46.26 4.02
402 403 1.068281 CACTGATAGCAGCTCGTCCAT 59.932 52.381 8.16 0.00 46.26 3.41
403 404 1.068281 ACTGATAGCAGCTCGTCCATG 59.932 52.381 8.16 0.00 46.26 3.66
404 405 0.390492 TGATAGCAGCTCGTCCATGG 59.610 55.000 4.97 4.97 0.00 3.66
405 406 0.948141 GATAGCAGCTCGTCCATGGC 60.948 60.000 6.96 0.96 0.00 4.40
406 407 1.689243 ATAGCAGCTCGTCCATGGCA 61.689 55.000 6.96 0.00 0.00 4.92
407 408 2.578163 TAGCAGCTCGTCCATGGCAC 62.578 60.000 6.96 5.56 0.00 5.01
420 421 3.822607 TGGCACACACAAAAACCAC 57.177 47.368 0.00 0.00 0.00 4.16
421 422 0.247736 TGGCACACACAAAAACCACC 59.752 50.000 0.00 0.00 0.00 4.61
422 423 0.534873 GGCACACACAAAAACCACCT 59.465 50.000 0.00 0.00 0.00 4.00
423 424 1.066502 GGCACACACAAAAACCACCTT 60.067 47.619 0.00 0.00 0.00 3.50
424 425 2.267426 GCACACACAAAAACCACCTTC 58.733 47.619 0.00 0.00 0.00 3.46
425 426 2.887337 CACACACAAAAACCACCTTCC 58.113 47.619 0.00 0.00 0.00 3.46
426 427 2.495669 CACACACAAAAACCACCTTCCT 59.504 45.455 0.00 0.00 0.00 3.36
427 428 3.697045 CACACACAAAAACCACCTTCCTA 59.303 43.478 0.00 0.00 0.00 2.94
428 429 3.951680 ACACACAAAAACCACCTTCCTAG 59.048 43.478 0.00 0.00 0.00 3.02
429 430 4.204012 CACACAAAAACCACCTTCCTAGA 58.796 43.478 0.00 0.00 0.00 2.43
430 431 4.827284 CACACAAAAACCACCTTCCTAGAT 59.173 41.667 0.00 0.00 0.00 1.98
431 432 4.827284 ACACAAAAACCACCTTCCTAGATG 59.173 41.667 0.00 0.00 0.00 2.90
432 433 4.218417 CACAAAAACCACCTTCCTAGATGG 59.782 45.833 0.00 0.00 38.26 3.51
433 434 2.808906 AAACCACCTTCCTAGATGGC 57.191 50.000 0.00 0.00 35.49 4.40
434 435 1.972588 AACCACCTTCCTAGATGGCT 58.027 50.000 0.00 0.00 35.49 4.75
435 436 1.501582 ACCACCTTCCTAGATGGCTC 58.498 55.000 0.00 0.00 35.49 4.70
436 437 1.273838 ACCACCTTCCTAGATGGCTCA 60.274 52.381 0.00 0.00 35.49 4.26
437 438 1.839994 CCACCTTCCTAGATGGCTCAA 59.160 52.381 0.00 0.00 35.26 3.02
438 439 2.239654 CCACCTTCCTAGATGGCTCAAA 59.760 50.000 0.00 0.00 35.26 2.69
439 440 3.117738 CCACCTTCCTAGATGGCTCAAAT 60.118 47.826 0.00 0.00 35.26 2.32
440 441 4.103153 CCACCTTCCTAGATGGCTCAAATA 59.897 45.833 0.00 0.00 35.26 1.40
441 442 5.059833 CACCTTCCTAGATGGCTCAAATAC 58.940 45.833 0.00 0.00 35.26 1.89
442 443 4.202264 ACCTTCCTAGATGGCTCAAATACG 60.202 45.833 0.00 0.00 35.26 3.06
443 444 4.310769 CTTCCTAGATGGCTCAAATACGG 58.689 47.826 0.00 0.00 35.26 4.02
444 445 2.037251 TCCTAGATGGCTCAAATACGGC 59.963 50.000 0.00 0.00 35.26 5.68
445 446 2.417719 CTAGATGGCTCAAATACGGCC 58.582 52.381 0.00 0.00 45.45 6.13
449 450 2.032981 GGCTCAAATACGGCCATGG 58.967 57.895 7.63 7.63 44.69 3.66
450 451 1.360192 GCTCAAATACGGCCATGGC 59.640 57.895 29.47 29.47 41.06 4.40
466 467 2.512896 GCCTGGGCCCAGTAGATG 59.487 66.667 42.69 30.37 42.15 2.90
467 468 2.072487 GCCTGGGCCCAGTAGATGA 61.072 63.158 42.69 12.62 42.15 2.92
468 469 1.635817 GCCTGGGCCCAGTAGATGAA 61.636 60.000 42.69 11.83 42.15 2.57
469 470 1.143813 CCTGGGCCCAGTAGATGAAT 58.856 55.000 42.69 0.00 42.15 2.57
470 471 1.072965 CCTGGGCCCAGTAGATGAATC 59.927 57.143 42.69 5.40 42.15 2.52
471 472 1.072965 CTGGGCCCAGTAGATGAATCC 59.927 57.143 39.52 0.78 39.10 3.01
472 473 0.035458 GGGCCCAGTAGATGAATCCG 59.965 60.000 19.95 0.00 0.00 4.18
473 474 0.035458 GGCCCAGTAGATGAATCCGG 59.965 60.000 0.00 0.00 0.00 5.14
474 475 0.603975 GCCCAGTAGATGAATCCGGC 60.604 60.000 0.00 0.00 0.00 6.13
475 476 0.035458 CCCAGTAGATGAATCCGGCC 59.965 60.000 0.00 0.00 0.00 6.13
476 477 0.758734 CCAGTAGATGAATCCGGCCA 59.241 55.000 2.24 0.00 0.00 5.36
477 478 1.349026 CCAGTAGATGAATCCGGCCAT 59.651 52.381 2.24 0.00 0.00 4.40
478 479 2.420642 CAGTAGATGAATCCGGCCATG 58.579 52.381 2.24 0.00 0.00 3.66
479 480 1.349026 AGTAGATGAATCCGGCCATGG 59.651 52.381 7.63 7.63 0.00 3.66
480 481 1.347707 GTAGATGAATCCGGCCATGGA 59.652 52.381 18.40 1.76 43.58 3.41
481 482 0.399454 AGATGAATCCGGCCATGGAG 59.601 55.000 18.40 8.43 42.45 3.86
482 483 1.228367 ATGAATCCGGCCATGGAGC 60.228 57.895 18.40 0.00 42.45 4.70
483 484 1.713005 ATGAATCCGGCCATGGAGCT 61.713 55.000 18.40 0.00 42.45 4.09
484 485 1.152881 GAATCCGGCCATGGAGCTT 60.153 57.895 18.40 0.34 42.45 3.74
485 486 1.450531 GAATCCGGCCATGGAGCTTG 61.451 60.000 18.40 0.00 42.45 4.01
486 487 2.215451 AATCCGGCCATGGAGCTTGT 62.215 55.000 18.40 0.00 42.45 3.16
487 488 1.344953 ATCCGGCCATGGAGCTTGTA 61.345 55.000 18.40 0.00 42.45 2.41
488 489 1.524621 CCGGCCATGGAGCTTGTAG 60.525 63.158 18.40 0.00 0.00 2.74
489 490 2.182842 CGGCCATGGAGCTTGTAGC 61.183 63.158 18.40 0.00 42.84 3.58
490 491 1.077501 GGCCATGGAGCTTGTAGCA 60.078 57.895 18.40 0.00 45.56 3.49
491 492 1.099879 GGCCATGGAGCTTGTAGCAG 61.100 60.000 18.40 0.00 45.56 4.24
492 493 1.722636 GCCATGGAGCTTGTAGCAGC 61.723 60.000 18.40 0.00 45.56 5.25
493 494 0.393402 CCATGGAGCTTGTAGCAGCA 60.393 55.000 5.56 0.00 45.56 4.41
494 495 1.456296 CATGGAGCTTGTAGCAGCAA 58.544 50.000 0.00 0.00 45.56 3.91
495 496 1.400846 CATGGAGCTTGTAGCAGCAAG 59.599 52.381 13.72 13.72 45.56 4.01
496 497 0.321919 TGGAGCTTGTAGCAGCAAGG 60.322 55.000 17.87 4.68 45.56 3.61
497 498 1.652167 GGAGCTTGTAGCAGCAAGGC 61.652 60.000 17.87 11.87 45.56 4.35
498 499 0.957395 GAGCTTGTAGCAGCAAGGCA 60.957 55.000 17.87 0.00 45.56 4.75
499 500 0.959372 AGCTTGTAGCAGCAAGGCAG 60.959 55.000 17.87 0.00 45.56 4.85
500 501 1.505353 CTTGTAGCAGCAAGGCAGC 59.495 57.895 11.10 0.00 41.41 5.25
501 502 2.249557 CTTGTAGCAGCAAGGCAGCG 62.250 60.000 11.10 0.00 45.54 5.18
502 503 4.171416 GTAGCAGCAAGGCAGCGC 62.171 66.667 0.00 0.00 45.54 5.92
518 519 4.438346 GCCGCACGGTGATCTATT 57.562 55.556 13.29 0.00 37.65 1.73
519 520 2.690326 GCCGCACGGTGATCTATTT 58.310 52.632 13.29 0.00 37.65 1.40
520 521 1.014352 GCCGCACGGTGATCTATTTT 58.986 50.000 13.29 0.00 37.65 1.82
521 522 1.268032 GCCGCACGGTGATCTATTTTG 60.268 52.381 13.29 0.00 37.65 2.44
522 523 1.330521 CCGCACGGTGATCTATTTTGG 59.669 52.381 13.29 0.00 0.00 3.28
523 524 2.276201 CGCACGGTGATCTATTTTGGA 58.724 47.619 13.29 0.00 0.00 3.53
524 525 2.872245 CGCACGGTGATCTATTTTGGAT 59.128 45.455 13.29 0.00 0.00 3.41
525 526 3.303329 CGCACGGTGATCTATTTTGGATG 60.303 47.826 13.29 0.00 0.00 3.51
526 527 3.003689 GCACGGTGATCTATTTTGGATGG 59.996 47.826 13.29 0.00 0.00 3.51
527 528 4.199310 CACGGTGATCTATTTTGGATGGT 58.801 43.478 0.74 0.00 0.00 3.55
528 529 4.273480 CACGGTGATCTATTTTGGATGGTC 59.727 45.833 0.74 0.00 0.00 4.02
529 530 3.815401 CGGTGATCTATTTTGGATGGTCC 59.185 47.826 0.00 0.00 36.96 4.46
530 531 4.444876 CGGTGATCTATTTTGGATGGTCCT 60.445 45.833 0.00 0.00 37.46 3.85
531 532 5.449553 GGTGATCTATTTTGGATGGTCCTT 58.550 41.667 0.00 0.00 37.46 3.36
532 533 5.300286 GGTGATCTATTTTGGATGGTCCTTG 59.700 44.000 0.00 0.00 37.46 3.61
533 534 4.889409 TGATCTATTTTGGATGGTCCTTGC 59.111 41.667 0.00 0.00 37.46 4.01
534 535 3.631250 TCTATTTTGGATGGTCCTTGCC 58.369 45.455 0.00 0.00 37.46 4.52
535 536 1.185315 ATTTTGGATGGTCCTTGCCG 58.815 50.000 0.00 0.00 37.46 5.69
536 537 0.178975 TTTTGGATGGTCCTTGCCGT 60.179 50.000 0.00 0.00 37.46 5.68
537 538 0.893270 TTTGGATGGTCCTTGCCGTG 60.893 55.000 0.00 0.00 37.46 4.94
538 539 1.773856 TTGGATGGTCCTTGCCGTGA 61.774 55.000 0.00 0.00 37.46 4.35
539 540 1.224592 GGATGGTCCTTGCCGTGAT 59.775 57.895 0.00 0.00 32.53 3.06
540 541 0.394352 GGATGGTCCTTGCCGTGATT 60.394 55.000 0.00 0.00 32.53 2.57
541 542 1.463674 GATGGTCCTTGCCGTGATTT 58.536 50.000 0.00 0.00 0.00 2.17
542 543 1.133025 GATGGTCCTTGCCGTGATTTG 59.867 52.381 0.00 0.00 0.00 2.32
543 544 1.212751 GGTCCTTGCCGTGATTTGC 59.787 57.895 0.00 0.00 0.00 3.68
544 545 1.244019 GGTCCTTGCCGTGATTTGCT 61.244 55.000 0.00 0.00 0.00 3.91
545 546 0.109597 GTCCTTGCCGTGATTTGCTG 60.110 55.000 0.00 0.00 0.00 4.41
546 547 1.444895 CCTTGCCGTGATTTGCTGC 60.445 57.895 0.00 0.00 0.00 5.25
547 548 1.798725 CTTGCCGTGATTTGCTGCG 60.799 57.895 0.00 0.00 0.00 5.18
548 549 3.266230 TTGCCGTGATTTGCTGCGG 62.266 57.895 0.00 0.00 46.17 5.69
549 550 4.481112 GCCGTGATTTGCTGCGGG 62.481 66.667 0.00 0.00 43.90 6.13
550 551 3.814268 CCGTGATTTGCTGCGGGG 61.814 66.667 0.00 0.00 40.45 5.73
551 552 2.745884 CGTGATTTGCTGCGGGGA 60.746 61.111 0.00 0.00 0.00 4.81
552 553 2.753966 CGTGATTTGCTGCGGGGAG 61.754 63.158 0.00 0.00 0.00 4.30
553 554 2.045045 TGATTTGCTGCGGGGAGG 60.045 61.111 0.00 0.00 0.00 4.30
554 555 2.272146 GATTTGCTGCGGGGAGGA 59.728 61.111 0.00 0.00 0.00 3.71
555 556 1.821332 GATTTGCTGCGGGGAGGAG 60.821 63.158 0.00 0.00 41.69 3.69
556 557 3.350031 ATTTGCTGCGGGGAGGAGG 62.350 63.158 0.00 0.00 38.88 4.30
564 565 4.798682 GGGGAGGAGGGCGAAGGA 62.799 72.222 0.00 0.00 0.00 3.36
565 566 2.446802 GGGAGGAGGGCGAAGGAT 60.447 66.667 0.00 0.00 0.00 3.24
566 567 2.812619 GGGAGGAGGGCGAAGGATG 61.813 68.421 0.00 0.00 0.00 3.51
567 568 2.812619 GGAGGAGGGCGAAGGATGG 61.813 68.421 0.00 0.00 0.00 3.51
568 569 3.468326 GAGGAGGGCGAAGGATGGC 62.468 68.421 0.00 0.00 0.00 4.40
569 570 4.918201 GGAGGGCGAAGGATGGCG 62.918 72.222 0.00 0.00 0.00 5.69
585 586 2.772189 CGCGGTCGCAGAAAAGAG 59.228 61.111 15.68 0.00 39.69 2.85
586 587 1.733041 CGCGGTCGCAGAAAAGAGA 60.733 57.895 15.68 0.00 39.69 3.10
587 588 1.282248 CGCGGTCGCAGAAAAGAGAA 61.282 55.000 15.68 0.00 39.69 2.87
588 589 0.164002 GCGGTCGCAGAAAAGAGAAC 59.836 55.000 10.67 0.00 39.69 3.01
589 590 0.435008 CGGTCGCAGAAAAGAGAACG 59.565 55.000 0.00 0.00 41.73 3.95
590 591 0.790814 GGTCGCAGAAAAGAGAACGG 59.209 55.000 0.00 0.00 39.69 4.44
591 592 1.604693 GGTCGCAGAAAAGAGAACGGA 60.605 52.381 0.00 0.00 39.69 4.69
592 593 1.721926 GTCGCAGAAAAGAGAACGGAG 59.278 52.381 0.00 0.00 39.69 4.63
593 594 1.611977 TCGCAGAAAAGAGAACGGAGA 59.388 47.619 0.00 0.00 0.00 3.71
594 595 2.231478 TCGCAGAAAAGAGAACGGAGAT 59.769 45.455 0.00 0.00 0.00 2.75
595 596 2.346847 CGCAGAAAAGAGAACGGAGATG 59.653 50.000 0.00 0.00 0.00 2.90
596 597 3.589988 GCAGAAAAGAGAACGGAGATGA 58.410 45.455 0.00 0.00 0.00 2.92
597 598 3.616379 GCAGAAAAGAGAACGGAGATGAG 59.384 47.826 0.00 0.00 0.00 2.90
598 599 4.619394 GCAGAAAAGAGAACGGAGATGAGA 60.619 45.833 0.00 0.00 0.00 3.27
599 600 5.659463 CAGAAAAGAGAACGGAGATGAGAT 58.341 41.667 0.00 0.00 0.00 2.75
600 601 5.519566 CAGAAAAGAGAACGGAGATGAGATG 59.480 44.000 0.00 0.00 0.00 2.90
601 602 3.451141 AAGAGAACGGAGATGAGATGC 57.549 47.619 0.00 0.00 0.00 3.91
602 603 1.336440 AGAGAACGGAGATGAGATGCG 59.664 52.381 0.00 0.00 37.53 4.73
603 604 0.387202 AGAACGGAGATGAGATGCGG 59.613 55.000 0.00 0.00 35.63 5.69
604 605 0.385751 GAACGGAGATGAGATGCGGA 59.614 55.000 0.00 0.00 35.63 5.54
605 606 0.103208 AACGGAGATGAGATGCGGAC 59.897 55.000 0.00 0.00 35.63 4.79
606 607 1.037579 ACGGAGATGAGATGCGGACA 61.038 55.000 0.00 0.00 35.63 4.02
607 608 0.318529 CGGAGATGAGATGCGGACAG 60.319 60.000 0.00 0.00 0.00 3.51
608 609 0.749649 GGAGATGAGATGCGGACAGT 59.250 55.000 0.00 0.00 0.00 3.55
609 610 1.537776 GGAGATGAGATGCGGACAGTG 60.538 57.143 0.00 0.00 0.00 3.66
610 611 0.463204 AGATGAGATGCGGACAGTGG 59.537 55.000 0.00 0.00 0.00 4.00
611 612 0.461548 GATGAGATGCGGACAGTGGA 59.538 55.000 0.00 0.00 0.00 4.02
612 613 0.463204 ATGAGATGCGGACAGTGGAG 59.537 55.000 0.00 0.00 0.00 3.86
613 614 0.611896 TGAGATGCGGACAGTGGAGA 60.612 55.000 0.00 0.00 0.00 3.71
614 615 0.532573 GAGATGCGGACAGTGGAGAA 59.467 55.000 0.00 0.00 0.00 2.87
615 616 0.976641 AGATGCGGACAGTGGAGAAA 59.023 50.000 0.00 0.00 0.00 2.52
616 617 1.066573 AGATGCGGACAGTGGAGAAAG 60.067 52.381 0.00 0.00 0.00 2.62
617 618 0.976641 ATGCGGACAGTGGAGAAAGA 59.023 50.000 0.00 0.00 0.00 2.52
618 619 0.756294 TGCGGACAGTGGAGAAAGAA 59.244 50.000 0.00 0.00 0.00 2.52
619 620 1.270305 TGCGGACAGTGGAGAAAGAAG 60.270 52.381 0.00 0.00 0.00 2.85
620 621 1.270358 GCGGACAGTGGAGAAAGAAGT 60.270 52.381 0.00 0.00 0.00 3.01
621 622 2.408050 CGGACAGTGGAGAAAGAAGTG 58.592 52.381 0.00 0.00 0.00 3.16
622 623 2.772287 GGACAGTGGAGAAAGAAGTGG 58.228 52.381 0.00 0.00 0.00 4.00
623 624 2.368875 GGACAGTGGAGAAAGAAGTGGA 59.631 50.000 0.00 0.00 0.00 4.02
624 625 3.556004 GGACAGTGGAGAAAGAAGTGGAG 60.556 52.174 0.00 0.00 0.00 3.86
625 626 2.224402 ACAGTGGAGAAAGAAGTGGAGC 60.224 50.000 0.00 0.00 0.00 4.70
626 627 1.349357 AGTGGAGAAAGAAGTGGAGCC 59.651 52.381 0.00 0.00 0.00 4.70
627 628 0.693049 TGGAGAAAGAAGTGGAGCCC 59.307 55.000 0.00 0.00 0.00 5.19
628 629 0.988063 GGAGAAAGAAGTGGAGCCCT 59.012 55.000 0.00 0.00 0.00 5.19
629 630 1.339535 GGAGAAAGAAGTGGAGCCCTG 60.340 57.143 0.00 0.00 0.00 4.45
630 631 1.625818 GAGAAAGAAGTGGAGCCCTGA 59.374 52.381 0.00 0.00 0.00 3.86
631 632 1.349357 AGAAAGAAGTGGAGCCCTGAC 59.651 52.381 0.00 0.00 0.00 3.51
632 633 0.035458 AAAGAAGTGGAGCCCTGACG 59.965 55.000 0.00 0.00 0.00 4.35
633 634 1.122019 AAGAAGTGGAGCCCTGACGT 61.122 55.000 0.00 0.00 0.00 4.34
634 635 1.374758 GAAGTGGAGCCCTGACGTG 60.375 63.158 0.00 0.00 0.00 4.49
635 636 2.100879 GAAGTGGAGCCCTGACGTGT 62.101 60.000 0.00 0.00 0.00 4.49
636 637 2.357517 GTGGAGCCCTGACGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
637 638 3.625897 TGGAGCCCTGACGTGTGG 61.626 66.667 0.00 0.00 0.00 4.17
661 662 4.893601 TGCGTGCGACCGGTGAAA 62.894 61.111 14.63 0.00 0.00 2.69
662 663 4.364409 GCGTGCGACCGGTGAAAC 62.364 66.667 14.63 5.87 0.00 2.78
663 664 2.962786 CGTGCGACCGGTGAAACA 60.963 61.111 14.63 0.63 39.98 2.83
664 665 2.314647 CGTGCGACCGGTGAAACAT 61.315 57.895 14.63 0.00 39.98 2.71
665 666 1.837538 CGTGCGACCGGTGAAACATT 61.838 55.000 14.63 0.00 39.98 2.71
666 667 0.309612 GTGCGACCGGTGAAACATTT 59.690 50.000 14.63 0.00 39.98 2.32
667 668 0.589223 TGCGACCGGTGAAACATTTC 59.411 50.000 14.63 0.00 39.98 2.17
668 669 0.589223 GCGACCGGTGAAACATTTCA 59.411 50.000 14.63 2.89 44.31 2.69
669 670 1.399727 GCGACCGGTGAAACATTTCAG 60.400 52.381 14.63 0.00 46.80 3.02
675 676 2.050477 GTGAAACATTTCAGCCGGTG 57.950 50.000 7.30 0.00 46.80 4.94
676 677 0.313672 TGAAACATTTCAGCCGGTGC 59.686 50.000 1.90 0.00 41.88 5.01
677 678 0.313672 GAAACATTTCAGCCGGTGCA 59.686 50.000 1.90 0.00 41.13 4.57
678 679 0.031994 AAACATTTCAGCCGGTGCAC 59.968 50.000 8.80 8.80 41.13 4.57
679 680 1.805428 AACATTTCAGCCGGTGCACC 61.805 55.000 26.78 26.78 41.13 5.01
689 690 2.124320 GGTGCACCGGCCATACAT 60.124 61.111 22.49 0.00 40.13 2.29
690 691 2.480610 GGTGCACCGGCCATACATG 61.481 63.158 22.49 0.00 40.13 3.21
691 692 1.748879 GTGCACCGGCCATACATGT 60.749 57.895 5.22 2.69 40.13 3.21
692 693 1.001517 TGCACCGGCCATACATGTT 60.002 52.632 2.30 0.00 40.13 2.71
693 694 0.610509 TGCACCGGCCATACATGTTT 60.611 50.000 2.30 0.00 40.13 2.83
694 695 0.100503 GCACCGGCCATACATGTTTC 59.899 55.000 2.30 0.00 0.00 2.78
695 696 0.738389 CACCGGCCATACATGTTTCC 59.262 55.000 2.30 0.00 0.00 3.13
696 697 0.395173 ACCGGCCATACATGTTTCCC 60.395 55.000 2.30 0.00 0.00 3.97
707 708 7.264947 CCATACATGTTTCCCTTGAATTTACC 58.735 38.462 2.30 0.00 0.00 2.85
711 712 6.661805 ACATGTTTCCCTTGAATTTACCGTAT 59.338 34.615 0.00 0.00 0.00 3.06
739 740 5.363562 AATGAAGACTCATCTATGGTGCA 57.636 39.130 0.00 0.00 41.66 4.57
740 741 5.563876 ATGAAGACTCATCTATGGTGCAT 57.436 39.130 0.00 0.00 37.82 3.96
742 743 4.162888 TGAAGACTCATCTATGGTGCATGT 59.837 41.667 0.00 0.00 33.57 3.21
744 745 4.449131 AGACTCATCTATGGTGCATGTTG 58.551 43.478 0.00 0.00 31.46 3.33
745 746 2.947652 ACTCATCTATGGTGCATGTTGC 59.052 45.455 0.00 0.00 45.29 4.17
759 760 2.668212 TTGCTTCGAGGGCAACGG 60.668 61.111 19.17 0.00 43.50 4.44
794 795 4.996122 CACCACCTATCTAGTACTACCTCG 59.004 50.000 0.00 0.00 0.00 4.63
818 837 6.258160 GGTCTCAAAATATGAATGAACACCG 58.742 40.000 0.00 0.00 37.67 4.94
819 838 6.128007 GGTCTCAAAATATGAATGAACACCGT 60.128 38.462 0.00 0.00 37.67 4.83
820 839 7.065324 GGTCTCAAAATATGAATGAACACCGTA 59.935 37.037 0.00 0.00 37.67 4.02
821 840 8.612619 GTCTCAAAATATGAATGAACACCGTAT 58.387 33.333 0.00 0.00 37.67 3.06
822 841 8.611757 TCTCAAAATATGAATGAACACCGTATG 58.388 33.333 0.00 0.00 37.67 2.39
823 842 8.499403 TCAAAATATGAATGAACACCGTATGA 57.501 30.769 0.00 0.00 34.30 2.15
824 843 8.611757 TCAAAATATGAATGAACACCGTATGAG 58.388 33.333 0.00 0.00 34.30 2.90
825 844 7.496529 AAATATGAATGAACACCGTATGAGG 57.503 36.000 0.00 0.00 37.30 3.86
826 845 4.753516 ATGAATGAACACCGTATGAGGA 57.246 40.909 0.00 0.00 34.73 3.71
827 846 3.857052 TGAATGAACACCGTATGAGGAC 58.143 45.455 0.00 0.00 34.73 3.85
828 847 3.513912 TGAATGAACACCGTATGAGGACT 59.486 43.478 0.00 0.00 34.73 3.85
829 848 3.802948 ATGAACACCGTATGAGGACTC 57.197 47.619 0.00 0.00 34.73 3.36
830 849 1.822990 TGAACACCGTATGAGGACTCC 59.177 52.381 0.00 0.00 34.73 3.85
831 850 0.815734 AACACCGTATGAGGACTCCG 59.184 55.000 0.00 0.00 34.73 4.63
872 891 3.145422 TTGCTGACAGGTGACGCGA 62.145 57.895 15.93 0.00 0.00 5.87
911 930 4.508124 CAGTTGGTAGGAACGATCAATAGC 59.492 45.833 0.00 0.00 0.00 2.97
979 998 3.357079 CAACGTGGGGTGCAGAGC 61.357 66.667 0.00 0.00 0.00 4.09
980 999 3.560251 AACGTGGGGTGCAGAGCT 61.560 61.111 0.00 0.00 0.00 4.09
1144 1168 4.046286 AGAAGCATATCGATCTCTCCCT 57.954 45.455 0.00 0.00 0.00 4.20
1146 1170 3.168035 AGCATATCGATCTCTCCCTGT 57.832 47.619 0.00 0.00 0.00 4.00
1180 1208 2.744202 GCTTTTGCTTCTTCTCCGATGA 59.256 45.455 0.00 0.00 43.35 2.92
1181 1209 3.376546 GCTTTTGCTTCTTCTCCGATGAT 59.623 43.478 0.00 0.00 43.35 2.45
1182 1210 4.730035 GCTTTTGCTTCTTCTCCGATGATG 60.730 45.833 0.00 0.00 43.35 3.07
1263 1294 2.962786 CACAACGACCACGGCGAA 60.963 61.111 16.62 0.00 44.46 4.70
2388 2422 4.101448 GTCCTGACGGCCCAGCAT 62.101 66.667 0.00 0.00 32.97 3.79
2492 2526 2.827800 ATCGCCATGATCATCGTTCT 57.172 45.000 4.86 0.00 28.49 3.01
2563 2597 3.285371 CGCAAGTACTCCCTCCGT 58.715 61.111 0.00 0.00 0.00 4.69
2564 2598 2.485677 CGCAAGTACTCCCTCCGTA 58.514 57.895 0.00 0.00 0.00 4.02
2565 2599 0.813184 CGCAAGTACTCCCTCCGTAA 59.187 55.000 0.00 0.00 0.00 3.18
2566 2600 1.203052 CGCAAGTACTCCCTCCGTAAA 59.797 52.381 0.00 0.00 0.00 2.01
2567 2601 2.614779 GCAAGTACTCCCTCCGTAAAC 58.385 52.381 0.00 0.00 0.00 2.01
2568 2602 2.233186 GCAAGTACTCCCTCCGTAAACT 59.767 50.000 0.00 0.00 0.00 2.66
2569 2603 3.445096 GCAAGTACTCCCTCCGTAAACTA 59.555 47.826 0.00 0.00 0.00 2.24
2570 2604 4.082026 GCAAGTACTCCCTCCGTAAACTAA 60.082 45.833 0.00 0.00 0.00 2.24
2571 2605 5.394993 GCAAGTACTCCCTCCGTAAACTAAT 60.395 44.000 0.00 0.00 0.00 1.73
2572 2606 6.183360 GCAAGTACTCCCTCCGTAAACTAATA 60.183 42.308 0.00 0.00 0.00 0.98
2573 2607 7.471120 GCAAGTACTCCCTCCGTAAACTAATAT 60.471 40.741 0.00 0.00 0.00 1.28
2574 2608 9.071276 CAAGTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
2575 2609 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
2576 2610 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2577 2611 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2578 2612 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2579 2613 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2580 2614 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2581 2615 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2582 2616 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2583 2617 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2584 2618 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2585 2619 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2586 2620 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2600 2634 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
2601 2635 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
2602 2636 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
2603 2637 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
2604 2638 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
2610 2644 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
2611 2645 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
2612 2646 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2613 2647 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2614 2648 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2615 2649 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2616 2650 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2631 2665 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2632 2666 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2633 2667 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2690 2724 2.044946 AATTCCACGCAGAGCCCC 60.045 61.111 0.00 0.00 0.00 5.80
2710 2744 1.447489 CCGCTCAGCTGGTCTTCAG 60.447 63.158 15.13 3.46 46.03 3.02
2718 2752 3.003173 TGGTCTTCAGAGGGGCGG 61.003 66.667 0.00 0.00 0.00 6.13
2765 2799 2.506217 GCGCCATTCTCGTCACGA 60.506 61.111 0.00 0.00 0.00 4.35
2792 2826 1.607801 GCAGGCAAAACCAGGGGATC 61.608 60.000 0.00 0.00 43.14 3.36
3290 3324 0.815734 CGTCCATCACCGTCTACCTT 59.184 55.000 0.00 0.00 0.00 3.50
3476 3510 1.553690 CCATCAGGACCAAGGACGGT 61.554 60.000 0.00 0.00 43.91 4.83
3623 3657 2.514013 GCGCGTGGGTGATTCGTAG 61.514 63.158 8.43 0.00 0.00 3.51
3624 3658 1.153901 CGCGTGGGTGATTCGTAGT 60.154 57.895 0.00 0.00 0.00 2.73
3625 3659 0.099259 CGCGTGGGTGATTCGTAGTA 59.901 55.000 0.00 0.00 0.00 1.82
3653 3687 0.672401 CGGGCATGTCGTGGTTACTT 60.672 55.000 0.00 0.00 0.00 2.24
3729 3766 4.671508 CGTGGTGTGTATGCTACAAAATGG 60.672 45.833 0.00 0.00 40.93 3.16
3771 3810 5.307196 AGTTCTGGCAAAACTCTACTTAGGA 59.693 40.000 0.00 0.00 31.36 2.94
3782 3821 1.893801 CTACTTAGGATACGCAGGGGG 59.106 57.143 0.00 0.00 46.39 5.40
3888 3927 1.070445 CATCACGGATGAGGAGGCC 59.930 63.158 0.00 0.00 42.09 5.19
4152 4193 1.064654 GCGGTGATCCTTGCTGATTTC 59.935 52.381 0.00 0.00 0.00 2.17
4224 4265 0.833287 CACGGGTCATGAATCTCCCT 59.167 55.000 15.23 2.52 37.92 4.20
4252 4293 2.306219 CTCAGAGATGATGCATGGGGAT 59.694 50.000 2.46 0.00 0.00 3.85
4257 4298 3.228453 AGATGATGCATGGGGATTTGAC 58.772 45.455 2.46 0.00 0.00 3.18
4284 4325 5.277538 CGCAAAACAGATAGATAAAGGAGCC 60.278 44.000 0.00 0.00 0.00 4.70
4310 7621 3.628942 TCAGTGCAGTTTGATCATATGGC 59.371 43.478 2.13 0.70 0.00 4.40
4336 7647 2.048316 TGCATGCGCGAGTCTCAA 60.048 55.556 12.10 0.00 42.97 3.02
4385 7696 6.605995 AGATGGATCTTGATTGATTCAGCAAA 59.394 34.615 4.25 0.00 39.94 3.68
4393 7704 8.415553 TCTTGATTGATTCAGCAAAAAGAAAGA 58.584 29.630 0.00 0.00 34.42 2.52
4445 7756 3.810310 TGTCCCGCATTTTTGTTTCTT 57.190 38.095 0.00 0.00 0.00 2.52
4455 7766 3.951775 TTTTGTTTCTTGTGTGGCTGT 57.048 38.095 0.00 0.00 0.00 4.40
4467 7778 2.150449 TGGCTGTTTAGGGCACTCA 58.850 52.632 0.00 0.00 34.37 3.41
4502 7829 1.192803 ACTCCGGGAAAGAGGGACAC 61.193 60.000 0.00 0.00 35.58 3.67
4561 7934 3.323243 TCGGATGAACGGAAGAAAACTC 58.677 45.455 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.060937 GCGATTGCTACAACCAGCG 59.939 57.895 0.00 0.00 44.88 5.18
38 39 4.195334 ATGACAGGGGATGGCGCC 62.195 66.667 22.73 22.73 41.39 6.53
50 51 4.408821 GGTGCTGGGGCGATGACA 62.409 66.667 0.00 0.00 42.25 3.58
52 53 4.100084 CTGGTGCTGGGGCGATGA 62.100 66.667 0.00 0.00 42.25 2.92
54 55 4.101448 GACTGGTGCTGGGGCGAT 62.101 66.667 0.00 0.00 42.25 4.58
91 92 3.507411 ACTAGAAGCTGGAACTGGTGTA 58.493 45.455 0.00 0.00 38.20 2.90
116 117 1.317613 ATCTCGTTTGCTGCAACCAA 58.682 45.000 15.72 0.00 0.00 3.67
168 169 4.264638 GTTGTTGGCGCCGTTGCT 62.265 61.111 23.90 0.00 34.43 3.91
173 174 1.206578 CTACAAGTTGTTGGCGCCG 59.793 57.895 23.90 7.09 38.07 6.46
175 176 0.660300 GTGCTACAAGTTGTTGGCGC 60.660 55.000 22.09 22.09 38.07 6.53
178 179 0.591170 CGGGTGCTACAAGTTGTTGG 59.409 55.000 14.90 8.87 38.07 3.77
180 181 1.503818 CGCGGGTGCTACAAGTTGTT 61.504 55.000 14.90 0.00 39.65 2.83
181 182 1.959226 CGCGGGTGCTACAAGTTGT 60.959 57.895 14.05 14.05 39.65 3.32
184 185 3.622826 ACCGCGGGTGCTACAAGT 61.623 61.111 31.76 0.00 39.65 3.16
226 227 1.164411 CCTGCGATTGCTACAAACCA 58.836 50.000 6.47 0.00 43.34 3.67
229 230 1.312371 GCCCCTGCGATTGCTACAAA 61.312 55.000 6.47 0.00 43.34 2.83
255 256 3.406361 CGTCACACACCGCTGCTC 61.406 66.667 0.00 0.00 0.00 4.26
260 261 1.019278 ATGGAATCGTCACACACCGC 61.019 55.000 0.00 0.00 0.00 5.68
267 268 3.179795 CGTCGATGTTATGGAATCGTCAC 59.820 47.826 0.00 0.00 44.63 3.67
279 280 2.417257 CCCGTCCCCGTCGATGTTA 61.417 63.158 3.52 0.00 0.00 2.41
293 294 2.093128 CCATTAGTGCTACCTTTCCCGT 60.093 50.000 0.00 0.00 0.00 5.28
294 295 2.093128 ACCATTAGTGCTACCTTTCCCG 60.093 50.000 0.00 0.00 0.00 5.14
295 296 3.279434 CACCATTAGTGCTACCTTTCCC 58.721 50.000 0.00 0.00 40.28 3.97
296 297 3.279434 CCACCATTAGTGCTACCTTTCC 58.721 50.000 0.00 0.00 45.83 3.13
297 298 3.279434 CCCACCATTAGTGCTACCTTTC 58.721 50.000 0.00 0.00 45.83 2.62
298 299 2.620627 GCCCACCATTAGTGCTACCTTT 60.621 50.000 0.00 0.00 45.83 3.11
299 300 1.064685 GCCCACCATTAGTGCTACCTT 60.065 52.381 0.00 0.00 45.83 3.50
300 301 0.546598 GCCCACCATTAGTGCTACCT 59.453 55.000 0.00 0.00 45.83 3.08
301 302 0.814010 CGCCCACCATTAGTGCTACC 60.814 60.000 0.00 0.00 45.83 3.18
302 303 0.107848 ACGCCCACCATTAGTGCTAC 60.108 55.000 0.00 0.00 45.83 3.58
303 304 0.616371 AACGCCCACCATTAGTGCTA 59.384 50.000 0.00 0.00 45.83 3.49
304 305 0.676782 GAACGCCCACCATTAGTGCT 60.677 55.000 0.00 0.00 45.83 4.40
305 306 1.654023 GGAACGCCCACCATTAGTGC 61.654 60.000 0.00 0.00 45.83 4.40
306 307 0.322098 TGGAACGCCCACCATTAGTG 60.322 55.000 0.00 0.00 46.83 2.74
307 308 0.402504 TTGGAACGCCCACCATTAGT 59.597 50.000 0.00 0.00 46.62 2.24
308 309 0.808755 GTTGGAACGCCCACCATTAG 59.191 55.000 0.00 0.00 46.62 1.73
309 310 0.110678 TGTTGGAACGCCCACCATTA 59.889 50.000 0.00 0.00 46.62 1.90
310 311 1.152652 TGTTGGAACGCCCACCATT 60.153 52.632 0.00 0.00 46.62 3.16
311 312 1.901464 GTGTTGGAACGCCCACCAT 60.901 57.895 0.00 0.00 46.62 3.55
312 313 2.517402 GTGTTGGAACGCCCACCA 60.517 61.111 0.00 0.00 46.62 4.17
318 319 0.240945 CCATGAAGGTGTTGGAACGC 59.759 55.000 0.00 0.00 38.65 4.84
329 330 5.124457 CAGAAGTTACATCCAACCATGAAGG 59.876 44.000 0.00 0.00 45.67 3.46
330 331 5.392380 GCAGAAGTTACATCCAACCATGAAG 60.392 44.000 0.00 0.00 0.00 3.02
331 332 4.458989 GCAGAAGTTACATCCAACCATGAA 59.541 41.667 0.00 0.00 0.00 2.57
332 333 4.009675 GCAGAAGTTACATCCAACCATGA 58.990 43.478 0.00 0.00 0.00 3.07
333 334 3.758023 TGCAGAAGTTACATCCAACCATG 59.242 43.478 0.00 0.00 0.00 3.66
334 335 4.012374 CTGCAGAAGTTACATCCAACCAT 58.988 43.478 8.42 0.00 0.00 3.55
335 336 3.411446 CTGCAGAAGTTACATCCAACCA 58.589 45.455 8.42 0.00 0.00 3.67
336 337 2.749621 CCTGCAGAAGTTACATCCAACC 59.250 50.000 17.39 0.00 0.00 3.77
337 338 3.674997 TCCTGCAGAAGTTACATCCAAC 58.325 45.455 17.39 0.00 0.00 3.77
338 339 3.307691 CCTCCTGCAGAAGTTACATCCAA 60.308 47.826 17.39 0.00 0.00 3.53
339 340 2.237143 CCTCCTGCAGAAGTTACATCCA 59.763 50.000 17.39 0.00 0.00 3.41
340 341 2.911484 CCTCCTGCAGAAGTTACATCC 58.089 52.381 17.39 0.00 0.00 3.51
341 342 2.284190 GCCTCCTGCAGAAGTTACATC 58.716 52.381 17.39 0.00 40.77 3.06
342 343 1.406069 CGCCTCCTGCAGAAGTTACAT 60.406 52.381 17.39 0.00 41.33 2.29
343 344 0.037326 CGCCTCCTGCAGAAGTTACA 60.037 55.000 17.39 0.00 41.33 2.41
344 345 1.362406 GCGCCTCCTGCAGAAGTTAC 61.362 60.000 17.39 0.00 41.33 2.50
345 346 1.079127 GCGCCTCCTGCAGAAGTTA 60.079 57.895 17.39 0.00 41.33 2.24
346 347 2.359230 GCGCCTCCTGCAGAAGTT 60.359 61.111 17.39 0.00 41.33 2.66
347 348 4.400961 GGCGCCTCCTGCAGAAGT 62.401 66.667 22.15 0.00 41.33 3.01
358 359 4.932105 TTTTTGCTGGGGGCGCCT 62.932 61.111 28.56 0.00 45.43 5.52
359 360 4.680237 GTTTTTGCTGGGGGCGCC 62.680 66.667 21.18 21.18 45.43 6.53
360 361 4.680237 GGTTTTTGCTGGGGGCGC 62.680 66.667 0.00 0.00 45.43 6.53
361 362 2.917227 AGGTTTTTGCTGGGGGCG 60.917 61.111 0.00 0.00 45.43 6.13
362 363 2.583441 GGAGGTTTTTGCTGGGGGC 61.583 63.158 0.00 0.00 42.22 5.80
363 364 1.913262 GGGAGGTTTTTGCTGGGGG 60.913 63.158 0.00 0.00 0.00 5.40
364 365 1.913262 GGGGAGGTTTTTGCTGGGG 60.913 63.158 0.00 0.00 0.00 4.96
365 366 1.152355 TGGGGAGGTTTTTGCTGGG 60.152 57.895 0.00 0.00 0.00 4.45
366 367 0.469892 AGTGGGGAGGTTTTTGCTGG 60.470 55.000 0.00 0.00 0.00 4.85
367 368 0.675633 CAGTGGGGAGGTTTTTGCTG 59.324 55.000 0.00 0.00 0.00 4.41
368 369 0.555769 TCAGTGGGGAGGTTTTTGCT 59.444 50.000 0.00 0.00 0.00 3.91
369 370 1.632589 ATCAGTGGGGAGGTTTTTGC 58.367 50.000 0.00 0.00 0.00 3.68
370 371 2.755103 GCTATCAGTGGGGAGGTTTTTG 59.245 50.000 0.00 0.00 0.00 2.44
371 372 2.378547 TGCTATCAGTGGGGAGGTTTTT 59.621 45.455 0.00 0.00 0.00 1.94
372 373 1.992557 TGCTATCAGTGGGGAGGTTTT 59.007 47.619 0.00 0.00 0.00 2.43
373 374 1.561542 CTGCTATCAGTGGGGAGGTTT 59.438 52.381 0.00 0.00 35.61 3.27
374 375 1.207791 CTGCTATCAGTGGGGAGGTT 58.792 55.000 0.00 0.00 35.61 3.50
375 376 1.341156 GCTGCTATCAGTGGGGAGGT 61.341 60.000 0.00 0.00 42.29 3.85
376 377 1.053264 AGCTGCTATCAGTGGGGAGG 61.053 60.000 0.00 0.00 42.29 4.30
377 378 0.392336 GAGCTGCTATCAGTGGGGAG 59.608 60.000 0.15 0.00 42.29 4.30
378 379 1.395045 CGAGCTGCTATCAGTGGGGA 61.395 60.000 0.15 0.00 42.29 4.81
379 380 1.068753 CGAGCTGCTATCAGTGGGG 59.931 63.158 0.15 0.00 42.29 4.96
380 381 0.249238 GACGAGCTGCTATCAGTGGG 60.249 60.000 0.15 0.00 42.29 4.61
381 382 0.249238 GGACGAGCTGCTATCAGTGG 60.249 60.000 0.15 0.00 42.29 4.00
382 383 0.457443 TGGACGAGCTGCTATCAGTG 59.543 55.000 0.15 0.00 42.29 3.66
383 384 1.068281 CATGGACGAGCTGCTATCAGT 59.932 52.381 0.15 0.26 42.29 3.41
384 385 1.604947 CCATGGACGAGCTGCTATCAG 60.605 57.143 5.56 0.00 43.16 2.90
385 386 0.390492 CCATGGACGAGCTGCTATCA 59.610 55.000 5.56 0.00 0.00 2.15
386 387 0.948141 GCCATGGACGAGCTGCTATC 60.948 60.000 18.40 3.26 0.00 2.08
387 388 1.070445 GCCATGGACGAGCTGCTAT 59.930 57.895 18.40 0.00 0.00 2.97
388 389 2.358372 TGCCATGGACGAGCTGCTA 61.358 57.895 18.40 0.00 0.00 3.49
389 390 3.709633 TGCCATGGACGAGCTGCT 61.710 61.111 18.40 0.00 0.00 4.24
390 391 3.503363 GTGCCATGGACGAGCTGC 61.503 66.667 18.40 0.00 0.00 5.25
391 392 2.046988 TGTGCCATGGACGAGCTG 60.047 61.111 18.40 0.00 0.00 4.24
392 393 2.046892 GTGTGCCATGGACGAGCT 60.047 61.111 18.40 0.00 0.00 4.09
393 394 2.358615 TGTGTGCCATGGACGAGC 60.359 61.111 18.40 0.00 0.00 5.03
394 395 0.884259 TTGTGTGTGCCATGGACGAG 60.884 55.000 18.40 0.00 0.00 4.18
395 396 0.464554 TTTGTGTGTGCCATGGACGA 60.465 50.000 18.40 0.38 0.00 4.20
396 397 0.383590 TTTTGTGTGTGCCATGGACG 59.616 50.000 18.40 0.00 0.00 4.79
397 398 2.200899 GTTTTTGTGTGTGCCATGGAC 58.799 47.619 18.40 11.54 0.00 4.02
398 399 1.137872 GGTTTTTGTGTGTGCCATGGA 59.862 47.619 18.40 0.00 0.00 3.41
399 400 1.134580 TGGTTTTTGTGTGTGCCATGG 60.135 47.619 7.63 7.63 0.00 3.66
400 401 1.932511 GTGGTTTTTGTGTGTGCCATG 59.067 47.619 0.00 0.00 0.00 3.66
401 402 1.134551 GGTGGTTTTTGTGTGTGCCAT 60.135 47.619 0.00 0.00 0.00 4.40
402 403 0.247736 GGTGGTTTTTGTGTGTGCCA 59.752 50.000 0.00 0.00 0.00 4.92
403 404 0.534873 AGGTGGTTTTTGTGTGTGCC 59.465 50.000 0.00 0.00 0.00 5.01
404 405 2.267426 GAAGGTGGTTTTTGTGTGTGC 58.733 47.619 0.00 0.00 0.00 4.57
405 406 2.495669 AGGAAGGTGGTTTTTGTGTGTG 59.504 45.455 0.00 0.00 0.00 3.82
406 407 2.815158 AGGAAGGTGGTTTTTGTGTGT 58.185 42.857 0.00 0.00 0.00 3.72
407 408 4.204012 TCTAGGAAGGTGGTTTTTGTGTG 58.796 43.478 0.00 0.00 0.00 3.82
408 409 4.513406 TCTAGGAAGGTGGTTTTTGTGT 57.487 40.909 0.00 0.00 0.00 3.72
409 410 5.376854 CATCTAGGAAGGTGGTTTTTGTG 57.623 43.478 0.00 0.00 29.43 3.33
418 419 3.634397 TTTGAGCCATCTAGGAAGGTG 57.366 47.619 0.00 0.00 41.22 4.00
419 420 4.202264 CGTATTTGAGCCATCTAGGAAGGT 60.202 45.833 0.00 0.00 41.22 3.50
420 421 4.310769 CGTATTTGAGCCATCTAGGAAGG 58.689 47.826 0.00 0.00 41.22 3.46
421 422 4.310769 CCGTATTTGAGCCATCTAGGAAG 58.689 47.826 0.00 0.00 41.22 3.46
422 423 3.494398 GCCGTATTTGAGCCATCTAGGAA 60.494 47.826 0.00 0.00 41.22 3.36
423 424 2.037251 GCCGTATTTGAGCCATCTAGGA 59.963 50.000 0.00 0.00 41.22 2.94
424 425 2.417719 GCCGTATTTGAGCCATCTAGG 58.582 52.381 0.00 0.00 41.84 3.02
425 426 2.417719 GGCCGTATTTGAGCCATCTAG 58.582 52.381 0.00 0.00 46.34 2.43
426 427 2.543777 GGCCGTATTTGAGCCATCTA 57.456 50.000 0.00 0.00 46.34 1.98
427 428 3.403936 GGCCGTATTTGAGCCATCT 57.596 52.632 0.00 0.00 46.34 2.90
432 433 1.360192 GCCATGGCCGTATTTGAGC 59.640 57.895 27.24 0.00 34.56 4.26
452 453 1.140312 GGATTCATCTACTGGGCCCA 58.860 55.000 26.67 26.67 0.00 5.36
453 454 0.035458 CGGATTCATCTACTGGGCCC 59.965 60.000 17.59 17.59 0.00 5.80
454 455 0.035458 CCGGATTCATCTACTGGGCC 59.965 60.000 0.00 0.00 0.00 5.80
455 456 0.603975 GCCGGATTCATCTACTGGGC 60.604 60.000 5.05 0.00 0.00 5.36
456 457 0.035458 GGCCGGATTCATCTACTGGG 59.965 60.000 5.05 0.00 0.00 4.45
457 458 0.758734 TGGCCGGATTCATCTACTGG 59.241 55.000 5.05 0.00 0.00 4.00
458 459 2.420642 CATGGCCGGATTCATCTACTG 58.579 52.381 5.05 0.00 0.00 2.74
459 460 1.349026 CCATGGCCGGATTCATCTACT 59.651 52.381 5.05 0.00 0.00 2.57
460 461 1.347707 TCCATGGCCGGATTCATCTAC 59.652 52.381 5.05 0.00 0.00 2.59
461 462 1.625315 CTCCATGGCCGGATTCATCTA 59.375 52.381 5.05 0.00 33.56 1.98
462 463 0.399454 CTCCATGGCCGGATTCATCT 59.601 55.000 5.05 0.00 33.56 2.90
463 464 1.239968 GCTCCATGGCCGGATTCATC 61.240 60.000 5.05 0.00 33.56 2.92
464 465 1.228367 GCTCCATGGCCGGATTCAT 60.228 57.895 5.05 2.04 33.56 2.57
465 466 1.925285 AAGCTCCATGGCCGGATTCA 61.925 55.000 5.05 0.00 33.56 2.57
466 467 1.152881 AAGCTCCATGGCCGGATTC 60.153 57.895 5.05 0.00 33.56 2.52
467 468 1.454479 CAAGCTCCATGGCCGGATT 60.454 57.895 5.05 1.76 33.56 3.01
468 469 1.344953 TACAAGCTCCATGGCCGGAT 61.345 55.000 5.05 0.00 33.56 4.18
469 470 1.971505 CTACAAGCTCCATGGCCGGA 61.972 60.000 5.05 0.00 0.00 5.14
470 471 1.524621 CTACAAGCTCCATGGCCGG 60.525 63.158 6.96 0.00 0.00 6.13
471 472 2.182842 GCTACAAGCTCCATGGCCG 61.183 63.158 6.96 1.19 38.45 6.13
472 473 1.077501 TGCTACAAGCTCCATGGCC 60.078 57.895 6.96 0.00 42.97 5.36
473 474 1.722636 GCTGCTACAAGCTCCATGGC 61.723 60.000 6.96 0.00 42.97 4.40
474 475 0.393402 TGCTGCTACAAGCTCCATGG 60.393 55.000 4.97 4.97 42.97 3.66
475 476 1.400846 CTTGCTGCTACAAGCTCCATG 59.599 52.381 0.00 0.00 42.97 3.66
476 477 1.681166 CCTTGCTGCTACAAGCTCCAT 60.681 52.381 12.23 0.00 44.66 3.41
477 478 0.321919 CCTTGCTGCTACAAGCTCCA 60.322 55.000 12.23 0.00 44.66 3.86
478 479 1.652167 GCCTTGCTGCTACAAGCTCC 61.652 60.000 12.23 2.09 44.66 4.70
479 480 0.957395 TGCCTTGCTGCTACAAGCTC 60.957 55.000 12.23 7.79 44.66 4.09
480 481 0.959372 CTGCCTTGCTGCTACAAGCT 60.959 55.000 12.23 0.00 44.66 3.74
481 482 1.505353 CTGCCTTGCTGCTACAAGC 59.495 57.895 12.23 0.60 44.66 4.01
499 500 4.865761 TAGATCACCGTGCGGCGC 62.866 66.667 27.44 27.44 39.71 6.53
500 501 1.151777 AAATAGATCACCGTGCGGCG 61.152 55.000 10.87 0.51 39.32 6.46
501 502 1.014352 AAAATAGATCACCGTGCGGC 58.986 50.000 10.87 0.00 39.32 6.53
502 503 1.330521 CCAAAATAGATCACCGTGCGG 59.669 52.381 9.29 9.29 42.03 5.69
503 504 2.276201 TCCAAAATAGATCACCGTGCG 58.724 47.619 0.00 0.00 0.00 5.34
504 505 3.003689 CCATCCAAAATAGATCACCGTGC 59.996 47.826 0.00 0.00 0.00 5.34
505 506 4.199310 ACCATCCAAAATAGATCACCGTG 58.801 43.478 0.00 0.00 0.00 4.94
506 507 4.451900 GACCATCCAAAATAGATCACCGT 58.548 43.478 0.00 0.00 0.00 4.83
507 508 3.815401 GGACCATCCAAAATAGATCACCG 59.185 47.826 0.00 0.00 36.28 4.94
508 509 5.053978 AGGACCATCCAAAATAGATCACC 57.946 43.478 0.00 0.00 39.61 4.02
509 510 5.221126 GCAAGGACCATCCAAAATAGATCAC 60.221 44.000 0.00 0.00 39.61 3.06
510 511 4.889409 GCAAGGACCATCCAAAATAGATCA 59.111 41.667 0.00 0.00 39.61 2.92
511 512 4.279420 GGCAAGGACCATCCAAAATAGATC 59.721 45.833 0.00 0.00 39.61 2.75
512 513 4.218312 GGCAAGGACCATCCAAAATAGAT 58.782 43.478 0.00 0.00 39.61 1.98
513 514 3.631250 GGCAAGGACCATCCAAAATAGA 58.369 45.455 0.00 0.00 39.61 1.98
514 515 2.358898 CGGCAAGGACCATCCAAAATAG 59.641 50.000 0.00 0.00 39.61 1.73
515 516 2.291282 ACGGCAAGGACCATCCAAAATA 60.291 45.455 0.00 0.00 39.61 1.40
516 517 1.185315 CGGCAAGGACCATCCAAAAT 58.815 50.000 0.00 0.00 39.61 1.82
517 518 0.178975 ACGGCAAGGACCATCCAAAA 60.179 50.000 0.00 0.00 39.61 2.44
518 519 0.893270 CACGGCAAGGACCATCCAAA 60.893 55.000 0.00 0.00 39.61 3.28
519 520 1.303236 CACGGCAAGGACCATCCAA 60.303 57.895 0.00 0.00 39.61 3.53
520 521 1.561769 ATCACGGCAAGGACCATCCA 61.562 55.000 0.00 0.00 39.61 3.41
521 522 0.394352 AATCACGGCAAGGACCATCC 60.394 55.000 0.00 0.00 36.58 3.51
522 523 1.133025 CAAATCACGGCAAGGACCATC 59.867 52.381 0.00 0.00 0.00 3.51
523 524 1.176527 CAAATCACGGCAAGGACCAT 58.823 50.000 0.00 0.00 0.00 3.55
524 525 1.523154 GCAAATCACGGCAAGGACCA 61.523 55.000 0.00 0.00 0.00 4.02
525 526 1.212751 GCAAATCACGGCAAGGACC 59.787 57.895 0.00 0.00 0.00 4.46
526 527 0.109597 CAGCAAATCACGGCAAGGAC 60.110 55.000 0.00 0.00 0.00 3.85
527 528 1.865788 GCAGCAAATCACGGCAAGGA 61.866 55.000 0.00 0.00 0.00 3.36
528 529 1.444895 GCAGCAAATCACGGCAAGG 60.445 57.895 0.00 0.00 0.00 3.61
529 530 1.798725 CGCAGCAAATCACGGCAAG 60.799 57.895 0.00 0.00 0.00 4.01
530 531 2.254951 CGCAGCAAATCACGGCAA 59.745 55.556 0.00 0.00 0.00 4.52
531 532 3.736100 CCGCAGCAAATCACGGCA 61.736 61.111 0.00 0.00 39.08 5.69
532 533 4.481112 CCCGCAGCAAATCACGGC 62.481 66.667 0.00 0.00 44.29 5.68
533 534 3.814268 CCCCGCAGCAAATCACGG 61.814 66.667 0.00 0.00 45.21 4.94
534 535 2.745884 TCCCCGCAGCAAATCACG 60.746 61.111 0.00 0.00 0.00 4.35
535 536 2.409870 CCTCCCCGCAGCAAATCAC 61.410 63.158 0.00 0.00 0.00 3.06
536 537 2.045045 CCTCCCCGCAGCAAATCA 60.045 61.111 0.00 0.00 0.00 2.57
537 538 1.821332 CTCCTCCCCGCAGCAAATC 60.821 63.158 0.00 0.00 0.00 2.17
538 539 2.273449 CTCCTCCCCGCAGCAAAT 59.727 61.111 0.00 0.00 0.00 2.32
539 540 4.033776 CCTCCTCCCCGCAGCAAA 62.034 66.667 0.00 0.00 0.00 3.68
547 548 4.798682 TCCTTCGCCCTCCTCCCC 62.799 72.222 0.00 0.00 0.00 4.81
548 549 2.446802 ATCCTTCGCCCTCCTCCC 60.447 66.667 0.00 0.00 0.00 4.30
549 550 2.812619 CCATCCTTCGCCCTCCTCC 61.813 68.421 0.00 0.00 0.00 4.30
550 551 2.825264 CCATCCTTCGCCCTCCTC 59.175 66.667 0.00 0.00 0.00 3.71
551 552 3.483869 GCCATCCTTCGCCCTCCT 61.484 66.667 0.00 0.00 0.00 3.69
552 553 4.918201 CGCCATCCTTCGCCCTCC 62.918 72.222 0.00 0.00 0.00 4.30
568 569 1.282248 TTCTCTTTTCTGCGACCGCG 61.282 55.000 9.91 0.00 45.51 6.46
569 570 0.164002 GTTCTCTTTTCTGCGACCGC 59.836 55.000 7.53 7.53 42.35 5.68
570 571 0.435008 CGTTCTCTTTTCTGCGACCG 59.565 55.000 0.00 0.00 0.00 4.79
571 572 0.790814 CCGTTCTCTTTTCTGCGACC 59.209 55.000 0.00 0.00 0.00 4.79
572 573 1.721926 CTCCGTTCTCTTTTCTGCGAC 59.278 52.381 0.00 0.00 0.00 5.19
573 574 1.611977 TCTCCGTTCTCTTTTCTGCGA 59.388 47.619 0.00 0.00 0.00 5.10
574 575 2.065993 TCTCCGTTCTCTTTTCTGCG 57.934 50.000 0.00 0.00 0.00 5.18
575 576 3.589988 TCATCTCCGTTCTCTTTTCTGC 58.410 45.455 0.00 0.00 0.00 4.26
576 577 5.065704 TCTCATCTCCGTTCTCTTTTCTG 57.934 43.478 0.00 0.00 0.00 3.02
577 578 5.659463 CATCTCATCTCCGTTCTCTTTTCT 58.341 41.667 0.00 0.00 0.00 2.52
578 579 4.269844 GCATCTCATCTCCGTTCTCTTTTC 59.730 45.833 0.00 0.00 0.00 2.29
579 580 4.187694 GCATCTCATCTCCGTTCTCTTTT 58.812 43.478 0.00 0.00 0.00 2.27
580 581 3.736433 CGCATCTCATCTCCGTTCTCTTT 60.736 47.826 0.00 0.00 0.00 2.52
581 582 2.223688 CGCATCTCATCTCCGTTCTCTT 60.224 50.000 0.00 0.00 0.00 2.85
582 583 1.336440 CGCATCTCATCTCCGTTCTCT 59.664 52.381 0.00 0.00 0.00 3.10
583 584 1.601663 CCGCATCTCATCTCCGTTCTC 60.602 57.143 0.00 0.00 0.00 2.87
584 585 0.387202 CCGCATCTCATCTCCGTTCT 59.613 55.000 0.00 0.00 0.00 3.01
585 586 0.385751 TCCGCATCTCATCTCCGTTC 59.614 55.000 0.00 0.00 0.00 3.95
586 587 0.103208 GTCCGCATCTCATCTCCGTT 59.897 55.000 0.00 0.00 0.00 4.44
587 588 1.037579 TGTCCGCATCTCATCTCCGT 61.038 55.000 0.00 0.00 0.00 4.69
588 589 0.318529 CTGTCCGCATCTCATCTCCG 60.319 60.000 0.00 0.00 0.00 4.63
589 590 0.749649 ACTGTCCGCATCTCATCTCC 59.250 55.000 0.00 0.00 0.00 3.71
590 591 1.537776 CCACTGTCCGCATCTCATCTC 60.538 57.143 0.00 0.00 0.00 2.75
591 592 0.463204 CCACTGTCCGCATCTCATCT 59.537 55.000 0.00 0.00 0.00 2.90
592 593 0.461548 TCCACTGTCCGCATCTCATC 59.538 55.000 0.00 0.00 0.00 2.92
593 594 0.463204 CTCCACTGTCCGCATCTCAT 59.537 55.000 0.00 0.00 0.00 2.90
594 595 0.611896 TCTCCACTGTCCGCATCTCA 60.612 55.000 0.00 0.00 0.00 3.27
595 596 0.532573 TTCTCCACTGTCCGCATCTC 59.467 55.000 0.00 0.00 0.00 2.75
596 597 0.976641 TTTCTCCACTGTCCGCATCT 59.023 50.000 0.00 0.00 0.00 2.90
597 598 1.066858 TCTTTCTCCACTGTCCGCATC 60.067 52.381 0.00 0.00 0.00 3.91
598 599 0.976641 TCTTTCTCCACTGTCCGCAT 59.023 50.000 0.00 0.00 0.00 4.73
599 600 0.756294 TTCTTTCTCCACTGTCCGCA 59.244 50.000 0.00 0.00 0.00 5.69
600 601 1.270358 ACTTCTTTCTCCACTGTCCGC 60.270 52.381 0.00 0.00 0.00 5.54
601 602 2.408050 CACTTCTTTCTCCACTGTCCG 58.592 52.381 0.00 0.00 0.00 4.79
602 603 2.368875 TCCACTTCTTTCTCCACTGTCC 59.631 50.000 0.00 0.00 0.00 4.02
603 604 3.658709 CTCCACTTCTTTCTCCACTGTC 58.341 50.000 0.00 0.00 0.00 3.51
604 605 2.224402 GCTCCACTTCTTTCTCCACTGT 60.224 50.000 0.00 0.00 0.00 3.55
605 606 2.421619 GCTCCACTTCTTTCTCCACTG 58.578 52.381 0.00 0.00 0.00 3.66
606 607 1.349357 GGCTCCACTTCTTTCTCCACT 59.651 52.381 0.00 0.00 0.00 4.00
607 608 1.611936 GGGCTCCACTTCTTTCTCCAC 60.612 57.143 0.00 0.00 0.00 4.02
608 609 0.693049 GGGCTCCACTTCTTTCTCCA 59.307 55.000 0.00 0.00 0.00 3.86
609 610 0.988063 AGGGCTCCACTTCTTTCTCC 59.012 55.000 0.00 0.00 0.00 3.71
610 611 1.625818 TCAGGGCTCCACTTCTTTCTC 59.374 52.381 0.00 0.00 0.00 2.87
611 612 1.349357 GTCAGGGCTCCACTTCTTTCT 59.651 52.381 0.00 0.00 0.00 2.52
612 613 1.814793 GTCAGGGCTCCACTTCTTTC 58.185 55.000 0.00 0.00 0.00 2.62
613 614 0.035458 CGTCAGGGCTCCACTTCTTT 59.965 55.000 0.00 0.00 0.00 2.52
614 615 1.122019 ACGTCAGGGCTCCACTTCTT 61.122 55.000 0.00 0.00 0.00 2.52
615 616 1.534235 ACGTCAGGGCTCCACTTCT 60.534 57.895 0.00 0.00 0.00 2.85
616 617 1.374758 CACGTCAGGGCTCCACTTC 60.375 63.158 0.00 0.00 0.00 3.01
617 618 2.140792 ACACGTCAGGGCTCCACTT 61.141 57.895 0.00 0.00 0.00 3.16
618 619 2.524394 ACACGTCAGGGCTCCACT 60.524 61.111 0.00 0.00 0.00 4.00
619 620 2.357517 CACACGTCAGGGCTCCAC 60.358 66.667 0.00 0.00 0.00 4.02
620 621 3.625897 CCACACGTCAGGGCTCCA 61.626 66.667 0.00 0.00 0.00 3.86
644 645 4.893601 TTTCACCGGTCGCACGCA 62.894 61.111 2.59 0.00 0.00 5.24
645 646 4.364409 GTTTCACCGGTCGCACGC 62.364 66.667 2.59 0.00 0.00 5.34
646 647 1.837538 AATGTTTCACCGGTCGCACG 61.838 55.000 2.59 0.00 0.00 5.34
647 648 0.309612 AAATGTTTCACCGGTCGCAC 59.690 50.000 2.59 1.17 0.00 5.34
648 649 0.589223 GAAATGTTTCACCGGTCGCA 59.411 50.000 2.59 1.13 37.15 5.10
649 650 0.589223 TGAAATGTTTCACCGGTCGC 59.411 50.000 2.59 0.00 41.88 5.19
650 651 1.399727 GCTGAAATGTTTCACCGGTCG 60.400 52.381 2.59 0.00 41.88 4.79
651 652 1.068541 GGCTGAAATGTTTCACCGGTC 60.069 52.381 2.59 0.00 41.88 4.79
652 653 0.958822 GGCTGAAATGTTTCACCGGT 59.041 50.000 0.00 0.00 41.88 5.28
653 654 0.109781 CGGCTGAAATGTTTCACCGG 60.110 55.000 25.05 0.00 46.17 5.28
654 655 3.383026 CGGCTGAAATGTTTCACCG 57.617 52.632 22.41 22.41 45.55 4.94
655 656 0.958822 ACCGGCTGAAATGTTTCACC 59.041 50.000 0.00 9.54 41.88 4.02
656 657 1.930371 GCACCGGCTGAAATGTTTCAC 60.930 52.381 0.00 2.79 41.88 3.18
657 658 0.313672 GCACCGGCTGAAATGTTTCA 59.686 50.000 0.00 7.84 44.31 2.69
658 659 0.313672 TGCACCGGCTGAAATGTTTC 59.686 50.000 0.00 0.00 41.91 2.78
659 660 0.031994 GTGCACCGGCTGAAATGTTT 59.968 50.000 5.22 0.00 41.91 2.83
660 661 1.659794 GTGCACCGGCTGAAATGTT 59.340 52.632 5.22 0.00 41.91 2.71
661 662 2.268076 GGTGCACCGGCTGAAATGT 61.268 57.895 22.49 0.00 41.91 2.71
662 663 2.568090 GGTGCACCGGCTGAAATG 59.432 61.111 22.49 0.00 41.91 2.32
672 673 2.124320 ATGTATGGCCGGTGCACC 60.124 61.111 26.78 26.78 40.13 5.01
673 674 1.312371 AACATGTATGGCCGGTGCAC 61.312 55.000 8.80 8.80 40.13 4.57
674 675 0.610509 AAACATGTATGGCCGGTGCA 60.611 50.000 1.90 0.00 40.13 4.57
675 676 0.100503 GAAACATGTATGGCCGGTGC 59.899 55.000 1.90 0.00 0.00 5.01
676 677 0.738389 GGAAACATGTATGGCCGGTG 59.262 55.000 1.90 0.00 0.00 4.94
677 678 0.395173 GGGAAACATGTATGGCCGGT 60.395 55.000 1.90 0.00 0.00 5.28
678 679 0.106719 AGGGAAACATGTATGGCCGG 60.107 55.000 0.00 0.00 0.00 6.13
679 680 1.405105 CAAGGGAAACATGTATGGCCG 59.595 52.381 0.00 0.00 0.00 6.13
680 681 2.733956 TCAAGGGAAACATGTATGGCC 58.266 47.619 0.00 0.00 0.00 5.36
681 682 5.343307 AATTCAAGGGAAACATGTATGGC 57.657 39.130 0.00 0.00 36.43 4.40
682 683 7.264947 GGTAAATTCAAGGGAAACATGTATGG 58.735 38.462 0.00 0.00 36.43 2.74
683 684 6.972328 CGGTAAATTCAAGGGAAACATGTATG 59.028 38.462 0.00 0.00 36.43 2.39
684 685 6.661805 ACGGTAAATTCAAGGGAAACATGTAT 59.338 34.615 0.00 0.00 36.43 2.29
685 686 6.005198 ACGGTAAATTCAAGGGAAACATGTA 58.995 36.000 0.00 0.00 36.43 2.29
686 687 4.830600 ACGGTAAATTCAAGGGAAACATGT 59.169 37.500 0.00 0.00 36.43 3.21
687 688 5.385509 ACGGTAAATTCAAGGGAAACATG 57.614 39.130 0.00 0.00 36.43 3.21
688 689 7.712204 AATACGGTAAATTCAAGGGAAACAT 57.288 32.000 0.00 0.00 36.43 2.71
689 690 7.527568 AAATACGGTAAATTCAAGGGAAACA 57.472 32.000 0.00 0.00 36.43 2.83
739 740 4.819783 TTGCCCTCGAAGCAACAT 57.180 50.000 16.29 0.00 44.95 2.71
777 778 6.343716 TGAGACCGAGGTAGTACTAGATAG 57.656 45.833 1.87 0.00 0.00 2.08
794 795 6.128007 ACGGTGTTCATTCATATTTTGAGACC 60.128 38.462 0.00 0.00 35.27 3.85
818 837 5.455056 ACATTCATACGGAGTCCTCATAC 57.545 43.478 7.77 0.00 43.93 2.39
819 838 6.016527 GTGTACATTCATACGGAGTCCTCATA 60.017 42.308 7.77 0.00 43.93 2.15
820 839 4.893524 TGTACATTCATACGGAGTCCTCAT 59.106 41.667 7.77 0.00 43.93 2.90
821 840 4.097437 GTGTACATTCATACGGAGTCCTCA 59.903 45.833 7.77 0.00 43.93 3.86
822 841 4.499357 GGTGTACATTCATACGGAGTCCTC 60.499 50.000 7.77 0.00 43.93 3.71
823 842 3.383825 GGTGTACATTCATACGGAGTCCT 59.616 47.826 7.77 0.00 43.93 3.85
824 843 3.131577 TGGTGTACATTCATACGGAGTCC 59.868 47.826 0.00 0.00 43.93 3.85
825 844 4.380841 TGGTGTACATTCATACGGAGTC 57.619 45.455 0.00 0.00 43.93 3.36
826 845 6.474140 TTATGGTGTACATTCATACGGAGT 57.526 37.500 16.47 0.33 42.56 3.85
827 846 6.368791 CCATTATGGTGTACATTCATACGGAG 59.631 42.308 19.34 11.89 41.03 4.63
828 847 6.227522 CCATTATGGTGTACATTCATACGGA 58.772 40.000 19.34 10.18 41.03 4.69
829 848 5.106712 GCCATTATGGTGTACATTCATACGG 60.107 44.000 13.28 18.22 40.46 4.02
830 849 5.700832 AGCCATTATGGTGTACATTCATACG 59.299 40.000 13.28 12.34 40.46 3.06
831 850 7.362662 CAAGCCATTATGGTGTACATTCATAC 58.637 38.462 13.28 9.00 40.46 2.39
872 891 6.227298 ACCAACTGTAGAGATCGATTTCAT 57.773 37.500 17.33 6.05 0.00 2.57
911 930 9.248291 GTATAAATGCACATTTATCAAACCCAG 57.752 33.333 24.63 0.00 45.72 4.45
1144 1168 3.307059 GCAAAAGCTAGAGAGGAAGGACA 60.307 47.826 0.00 0.00 0.00 4.02
1146 1170 3.177228 AGCAAAAGCTAGAGAGGAAGGA 58.823 45.455 0.00 0.00 0.00 3.36
1180 1208 4.265056 GCGCCCCGGATAACCCAT 62.265 66.667 0.73 0.00 34.14 4.00
1182 1210 4.185286 AAGCGCCCCGGATAACCC 62.185 66.667 0.73 0.00 0.00 4.11
1263 1294 3.366070 CGATGACGAGGTAGTTCTTGTGT 60.366 47.826 0.00 0.00 42.66 3.72
1554 1585 4.148825 GTGAGCCCGAGCATCCGT 62.149 66.667 0.00 0.00 43.56 4.69
1594 1628 2.096248 GTTGTTGGTCCTGTTCCACAA 58.904 47.619 0.00 0.00 34.45 3.33
1610 1644 1.230616 ATCCCCTCCCCCATGTTGT 60.231 57.895 0.00 0.00 0.00 3.32
1770 1804 0.609957 TGGCCGACTCGTAGAAGGAA 60.610 55.000 0.00 0.00 34.09 3.36
1827 1861 4.168710 TGCGCGCTGTCGTCGATA 62.169 61.111 33.29 4.14 37.39 2.92
2388 2422 0.458669 GGACTATCTTTCCGGCGACA 59.541 55.000 9.30 0.00 0.00 4.35
2492 2526 1.865788 CGAACCAACGTCCTCCGGTA 61.866 60.000 0.00 0.00 42.24 4.02
2502 2536 1.068474 GTGAGATCACCGAACCAACG 58.932 55.000 1.33 0.00 40.85 4.10
2551 2585 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
2552 2586 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2553 2587 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2554 2588 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2555 2589 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2556 2590 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2557 2591 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2558 2592 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2559 2593 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2560 2594 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2574 2608 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
2575 2609 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
2576 2610 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
2577 2611 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
2578 2612 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
2584 2618 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
2585 2619 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
2586 2620 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
2587 2621 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
2588 2622 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
2589 2623 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2590 2624 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
2605 2639 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2606 2640 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2607 2641 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2608 2642 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2609 2643 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2615 2649 8.862085 GCTTCTACTCCCTCTGTAAACTAATAT 58.138 37.037 0.00 0.00 0.00 1.28
2616 2650 7.287235 GGCTTCTACTCCCTCTGTAAACTAATA 59.713 40.741 0.00 0.00 0.00 0.98
2617 2651 6.098552 GGCTTCTACTCCCTCTGTAAACTAAT 59.901 42.308 0.00 0.00 0.00 1.73
2618 2652 5.421374 GGCTTCTACTCCCTCTGTAAACTAA 59.579 44.000 0.00 0.00 0.00 2.24
2619 2653 4.954826 GGCTTCTACTCCCTCTGTAAACTA 59.045 45.833 0.00 0.00 0.00 2.24
2620 2654 3.770388 GGCTTCTACTCCCTCTGTAAACT 59.230 47.826 0.00 0.00 0.00 2.66
2621 2655 3.514309 TGGCTTCTACTCCCTCTGTAAAC 59.486 47.826 0.00 0.00 0.00 2.01
2622 2656 3.786553 TGGCTTCTACTCCCTCTGTAAA 58.213 45.455 0.00 0.00 0.00 2.01
2623 2657 3.468071 TGGCTTCTACTCCCTCTGTAA 57.532 47.619 0.00 0.00 0.00 2.41
2624 2658 3.245658 ACTTGGCTTCTACTCCCTCTGTA 60.246 47.826 0.00 0.00 0.00 2.74
2625 2659 2.183679 CTTGGCTTCTACTCCCTCTGT 58.816 52.381 0.00 0.00 0.00 3.41
2626 2660 2.093764 CACTTGGCTTCTACTCCCTCTG 60.094 54.545 0.00 0.00 0.00 3.35
2627 2661 2.183679 CACTTGGCTTCTACTCCCTCT 58.816 52.381 0.00 0.00 0.00 3.69
2628 2662 1.208293 CCACTTGGCTTCTACTCCCTC 59.792 57.143 0.00 0.00 0.00 4.30
2629 2663 1.280457 CCACTTGGCTTCTACTCCCT 58.720 55.000 0.00 0.00 0.00 4.20
2630 2664 0.984995 ACCACTTGGCTTCTACTCCC 59.015 55.000 0.00 0.00 39.32 4.30
2631 2665 1.404315 CGACCACTTGGCTTCTACTCC 60.404 57.143 0.00 0.00 39.32 3.85
2632 2666 1.404315 CCGACCACTTGGCTTCTACTC 60.404 57.143 0.00 0.00 39.32 2.59
2633 2667 0.608640 CCGACCACTTGGCTTCTACT 59.391 55.000 0.00 0.00 39.32 2.57
2640 2674 0.250513 ATCTTCTCCGACCACTTGGC 59.749 55.000 0.00 0.00 39.32 4.52
2690 2724 1.739562 GAAGACCAGCTGAGCGGTG 60.740 63.158 21.92 6.23 36.12 4.94
2792 2826 1.450312 GGTGATGTCGGGCTTGAGG 60.450 63.158 0.00 0.00 0.00 3.86
2987 3021 0.249120 TCGTCATCATGGCCGACTTT 59.751 50.000 0.00 0.00 0.00 2.66
3033 3067 2.513204 CTGGTCCAGCATCGGCAG 60.513 66.667 5.79 0.00 44.61 4.85
3091 3125 1.685224 GCTCTGGTGGGGTTGATGA 59.315 57.895 0.00 0.00 0.00 2.92
3290 3324 2.656069 GGCGTAGGGCTCCTTGTCA 61.656 63.158 1.11 0.00 42.94 3.58
3476 3510 0.897621 TGCGCTCCTTCATCTTCTGA 59.102 50.000 9.73 0.00 0.00 3.27
3623 3657 1.661821 CATGCCCGCGAGCTACTAC 60.662 63.158 15.33 0.00 0.00 2.73
3624 3658 2.071844 GACATGCCCGCGAGCTACTA 62.072 60.000 15.33 0.00 0.00 1.82
3625 3659 3.432051 GACATGCCCGCGAGCTACT 62.432 63.158 15.33 0.00 0.00 2.57
3729 3766 6.095377 CAGAACTTTACCAAGGCAATTCATC 58.905 40.000 0.00 0.00 33.82 2.92
3771 3810 1.074471 ATCTGGACCCCCTGCGTAT 60.074 57.895 0.00 0.00 0.00 3.06
3782 3821 1.153349 GCCTTCCCACGATCTGGAC 60.153 63.158 11.48 0.00 43.95 4.02
3810 3849 1.305046 TCCTGGAGAACCCGGAGTC 60.305 63.158 0.73 0.00 43.07 3.36
3822 3861 3.618855 AACCCTAGCCGCTCCTGGA 62.619 63.158 0.00 0.00 0.00 3.86
3888 3927 6.865726 CACGATCATCTAGGATTAAAGGAGTG 59.134 42.308 0.00 0.00 0.00 3.51
3960 4000 5.808540 CGTTTGGATATGAAGTAGGTTTCGA 59.191 40.000 0.00 0.00 0.00 3.71
4152 4193 1.769098 CTGGACGCATGCAATCCTCG 61.769 60.000 28.97 19.72 33.34 4.63
4224 4265 5.995897 CCATGCATCATCTCTGAGATTGTAA 59.004 40.000 17.27 8.01 31.32 2.41
4252 4293 6.741992 ATCTATCTGTTTTGCGATGTCAAA 57.258 33.333 0.00 0.00 34.47 2.69
4257 4298 7.482654 TCCTTTATCTATCTGTTTTGCGATG 57.517 36.000 0.00 0.00 0.00 3.84
4284 4325 4.696899 ATGATCAAACTGCACTGATGTG 57.303 40.909 0.00 0.00 46.37 3.21
4310 7621 3.720193 GCGCATGCAGATAGCCCG 61.720 66.667 19.57 0.00 44.83 6.13
4322 7633 1.596260 CATCAATTGAGACTCGCGCAT 59.404 47.619 14.54 0.00 0.00 4.73
4336 7647 2.211250 AGTGGCTTGCTCACATCAAT 57.789 45.000 13.60 0.00 37.58 2.57
4445 7756 0.821711 GTGCCCTAAACAGCCACACA 60.822 55.000 0.00 0.00 0.00 3.72
4455 7766 5.453903 GCAATAGAGATCTGAGTGCCCTAAA 60.454 44.000 13.23 0.00 0.00 1.85
4467 7778 3.426615 CGGAGTAGGGCAATAGAGATCT 58.573 50.000 0.00 0.00 0.00 2.75
4561 7934 2.625737 ACTCGAGCTGTCATTTGATGG 58.374 47.619 13.61 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.