Multiple sequence alignment - TraesCS6B01G278100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G278100 chr6B 100.000 3719 0 0 1 3719 503520501 503524219 0.000000e+00 6868.0
1 TraesCS6B01G278100 chr6D 94.679 1184 49 5 1817 3000 319708682 319707513 0.000000e+00 1825.0
2 TraesCS6B01G278100 chr6D 91.139 711 26 11 507 1198 319710042 319709350 0.000000e+00 929.0
3 TraesCS6B01G278100 chr6D 88.312 462 31 7 32 491 319710533 319710093 1.970000e-147 532.0
4 TraesCS6B01G278100 chr6D 91.850 319 11 3 1219 1533 319709365 319709058 7.380000e-117 431.0
5 TraesCS6B01G278100 chr6D 82.040 451 69 10 1838 2285 37431010 37431451 1.260000e-99 374.0
6 TraesCS6B01G278100 chr6D 91.176 272 17 2 1502 1766 319709055 319708784 2.730000e-96 363.0
7 TraesCS6B01G278100 chr6A 91.222 1105 65 13 1817 2900 457403521 457402428 0.000000e+00 1474.0
8 TraesCS6B01G278100 chr6A 97.234 723 20 0 2997 3719 70163269 70162547 0.000000e+00 1225.0
9 TraesCS6B01G278100 chr6A 88.982 717 30 18 505 1198 457404910 457404220 0.000000e+00 841.0
10 TraesCS6B01G278100 chr6A 91.727 278 15 6 1219 1492 457404235 457403962 2.710000e-101 379.0
11 TraesCS6B01G278100 chr6A 88.672 256 8 3 249 500 457405195 457404957 3.630000e-75 292.0
12 TraesCS6B01G278100 chr4A 99.448 724 4 0 2996 3719 347513546 347514269 0.000000e+00 1315.0
13 TraesCS6B01G278100 chr4A 99.308 723 5 0 2997 3719 221356359 221355637 0.000000e+00 1308.0
14 TraesCS6B01G278100 chr4A 84.067 477 68 8 1822 2295 16032347 16032818 1.570000e-123 453.0
15 TraesCS6B01G278100 chr5B 99.170 723 6 0 2997 3719 562368908 562368186 0.000000e+00 1303.0
16 TraesCS6B01G278100 chr2B 99.171 724 5 1 2997 3719 659781724 659782447 0.000000e+00 1303.0
17 TraesCS6B01G278100 chr2B 83.060 183 31 0 2423 2605 616474399 616474217 2.300000e-37 167.0
18 TraesCS6B01G278100 chr2B 93.617 47 3 0 1007 1053 616475625 616475579 1.850000e-08 71.3
19 TraesCS6B01G278100 chr2A 99.032 723 6 1 2997 3719 7967779 7967058 0.000000e+00 1295.0
20 TraesCS6B01G278100 chr2A 84.699 183 28 0 2423 2605 668050382 668050200 2.280000e-42 183.0
21 TraesCS6B01G278100 chr2A 94.000 50 3 0 1009 1058 668051606 668051557 3.980000e-10 76.8
22 TraesCS6B01G278100 chr3B 97.241 725 20 0 2995 3719 169243535 169244259 0.000000e+00 1229.0
23 TraesCS6B01G278100 chr3B 83.005 406 59 9 1838 2242 569295751 569295355 3.530000e-95 359.0
24 TraesCS6B01G278100 chr7B 97.234 723 20 0 2997 3719 103982334 103983056 0.000000e+00 1225.0
25 TraesCS6B01G278100 chr7A 97.234 723 20 0 2997 3719 1150303 1149581 0.000000e+00 1225.0
26 TraesCS6B01G278100 chr3D 83.149 451 64 11 1838 2285 579611507 579611948 5.790000e-108 401.0
27 TraesCS6B01G278100 chr3D 82.323 396 59 9 1839 2233 120909713 120910098 2.140000e-87 333.0
28 TraesCS6B01G278100 chrUn 81.457 453 70 10 1838 2285 327382528 327382971 3.530000e-95 359.0
29 TraesCS6B01G278100 chr5A 81.614 446 68 11 1838 2281 526049479 526049046 1.270000e-94 357.0
30 TraesCS6B01G278100 chr2D 83.505 194 29 1 2423 2616 522986571 522986381 1.060000e-40 178.0
31 TraesCS6B01G278100 chr2D 92.857 56 3 1 1007 1061 522987766 522987711 3.080000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G278100 chr6B 503520501 503524219 3718 False 6868.0 6868 100.00000 1 3719 1 chr6B.!!$F1 3718
1 TraesCS6B01G278100 chr6D 319707513 319710533 3020 True 816.0 1825 91.43120 32 3000 5 chr6D.!!$R1 2968
2 TraesCS6B01G278100 chr6A 70162547 70163269 722 True 1225.0 1225 97.23400 2997 3719 1 chr6A.!!$R1 722
3 TraesCS6B01G278100 chr6A 457402428 457405195 2767 True 746.5 1474 90.15075 249 2900 4 chr6A.!!$R2 2651
4 TraesCS6B01G278100 chr4A 347513546 347514269 723 False 1315.0 1315 99.44800 2996 3719 1 chr4A.!!$F2 723
5 TraesCS6B01G278100 chr4A 221355637 221356359 722 True 1308.0 1308 99.30800 2997 3719 1 chr4A.!!$R1 722
6 TraesCS6B01G278100 chr5B 562368186 562368908 722 True 1303.0 1303 99.17000 2997 3719 1 chr5B.!!$R1 722
7 TraesCS6B01G278100 chr2B 659781724 659782447 723 False 1303.0 1303 99.17100 2997 3719 1 chr2B.!!$F1 722
8 TraesCS6B01G278100 chr2A 7967058 7967779 721 True 1295.0 1295 99.03200 2997 3719 1 chr2A.!!$R1 722
9 TraesCS6B01G278100 chr3B 169243535 169244259 724 False 1229.0 1229 97.24100 2995 3719 1 chr3B.!!$F1 724
10 TraesCS6B01G278100 chr7B 103982334 103983056 722 False 1225.0 1225 97.23400 2997 3719 1 chr7B.!!$F1 722
11 TraesCS6B01G278100 chr7A 1149581 1150303 722 True 1225.0 1225 97.23400 2997 3719 1 chr7A.!!$R1 722

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.379669 CAGGATGCTCGCCATTTGAC 59.620 55.0 0.00 0.0 33.29 3.18 F
1099 1181 0.589729 CGAATTTCGCATCCAAGCCG 60.590 55.0 5.78 0.0 31.14 5.52 F
2399 2758 0.179078 CAGAGAGGCAAGCAGCTAGG 60.179 60.0 0.00 0.0 44.79 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1148 1231 0.247736 AGTGAAGTGACAGCGGGATC 59.752 55.0 0.0 0.0 0.00 3.36 R
2483 2842 0.036875 CCCCGAAGAGACTGCCTTTT 59.963 55.0 0.0 0.0 0.00 2.27 R
3315 3675 1.009829 GCTCGGACAAAGCACATAGG 58.990 55.0 0.0 0.0 39.61 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.244033 GTCGATCTGATCCATGATCCC 57.756 52.381 11.84 3.59 38.20 3.85
21 22 2.093764 GTCGATCTGATCCATGATCCCC 60.094 54.545 11.84 3.35 38.20 4.81
22 23 1.904537 CGATCTGATCCATGATCCCCA 59.095 52.381 11.84 0.00 38.20 4.96
23 24 2.303890 CGATCTGATCCATGATCCCCAA 59.696 50.000 11.84 0.00 38.20 4.12
24 25 3.054582 CGATCTGATCCATGATCCCCAAT 60.055 47.826 11.84 0.00 38.20 3.16
25 26 4.525024 GATCTGATCCATGATCCCCAATC 58.475 47.826 6.37 0.00 38.20 2.67
26 27 3.605879 TCTGATCCATGATCCCCAATCT 58.394 45.455 0.00 0.00 38.20 2.40
27 28 3.985452 TCTGATCCATGATCCCCAATCTT 59.015 43.478 0.00 0.00 38.20 2.40
28 29 4.042560 TCTGATCCATGATCCCCAATCTTC 59.957 45.833 0.00 0.00 38.20 2.87
29 30 3.985452 TGATCCATGATCCCCAATCTTCT 59.015 43.478 0.00 0.00 38.20 2.85
30 31 4.417854 TGATCCATGATCCCCAATCTTCTT 59.582 41.667 0.00 0.00 38.20 2.52
53 54 2.698855 ACTTCTTAGCATGGACGCAT 57.301 45.000 0.00 0.00 0.00 4.73
57 58 2.316108 TCTTAGCATGGACGCATAGGA 58.684 47.619 0.00 0.00 0.00 2.94
62 63 4.085357 AGCATGGACGCATAGGAATAAA 57.915 40.909 0.00 0.00 0.00 1.40
67 68 6.371548 GCATGGACGCATAGGAATAAAAGATA 59.628 38.462 0.00 0.00 0.00 1.98
68 69 7.066284 GCATGGACGCATAGGAATAAAAGATAT 59.934 37.037 0.00 0.00 0.00 1.63
88 89 6.703607 AGATATCTAACATCTTTCGCACCTTG 59.296 38.462 2.53 0.00 28.01 3.61
98 99 0.821301 TCGCACCTTGATGGCAAACA 60.821 50.000 0.00 0.00 40.22 2.83
102 103 2.173519 CACCTTGATGGCAAACAGGAT 58.826 47.619 14.29 0.00 40.22 3.24
103 104 2.094390 CACCTTGATGGCAAACAGGATG 60.094 50.000 14.29 2.40 40.69 3.51
105 106 1.822990 CTTGATGGCAAACAGGATGCT 59.177 47.619 0.00 0.00 42.53 3.79
116 117 0.379669 CAGGATGCTCGCCATTTGAC 59.620 55.000 0.00 0.00 33.29 3.18
132 133 5.125417 CCATTTGACCCGATATGTCTGTTTT 59.875 40.000 0.00 0.00 33.83 2.43
133 134 5.621197 TTTGACCCGATATGTCTGTTTTG 57.379 39.130 0.00 0.00 33.83 2.44
134 135 4.545208 TGACCCGATATGTCTGTTTTGA 57.455 40.909 0.00 0.00 33.83 2.69
136 137 3.871594 GACCCGATATGTCTGTTTTGAGG 59.128 47.826 0.00 0.00 0.00 3.86
137 138 3.517901 ACCCGATATGTCTGTTTTGAGGA 59.482 43.478 0.00 0.00 0.00 3.71
138 139 4.164221 ACCCGATATGTCTGTTTTGAGGAT 59.836 41.667 0.00 0.00 0.00 3.24
139 140 5.365605 ACCCGATATGTCTGTTTTGAGGATA 59.634 40.000 0.00 0.00 0.00 2.59
140 141 5.928839 CCCGATATGTCTGTTTTGAGGATAG 59.071 44.000 0.00 0.00 0.00 2.08
141 142 5.406780 CCGATATGTCTGTTTTGAGGATAGC 59.593 44.000 0.00 0.00 0.00 2.97
142 143 5.406780 CGATATGTCTGTTTTGAGGATAGCC 59.593 44.000 0.00 0.00 0.00 3.93
174 175 4.363999 GAATCGTTCGATGATCCAAGTCT 58.636 43.478 8.46 0.00 0.00 3.24
182 183 7.426410 GTTCGATGATCCAAGTCTTAGTCATA 58.574 38.462 6.54 0.00 0.00 2.15
185 186 8.951243 TCGATGATCCAAGTCTTAGTCATATAG 58.049 37.037 6.54 3.73 0.00 1.31
186 187 8.187480 CGATGATCCAAGTCTTAGTCATATAGG 58.813 40.741 6.54 0.00 0.00 2.57
187 188 9.249053 GATGATCCAAGTCTTAGTCATATAGGA 57.751 37.037 6.54 0.00 0.00 2.94
188 189 8.642935 TGATCCAAGTCTTAGTCATATAGGAG 57.357 38.462 0.00 0.00 0.00 3.69
189 190 8.228206 TGATCCAAGTCTTAGTCATATAGGAGT 58.772 37.037 0.00 0.00 0.00 3.85
190 191 9.742144 GATCCAAGTCTTAGTCATATAGGAGTA 57.258 37.037 0.00 0.00 0.00 2.59
191 192 8.921353 TCCAAGTCTTAGTCATATAGGAGTAC 57.079 38.462 1.44 0.00 0.00 2.73
192 193 8.725256 TCCAAGTCTTAGTCATATAGGAGTACT 58.275 37.037 0.00 0.00 0.00 2.73
233 234 6.775594 AAAACAAAGATAGGGCATCTAACC 57.224 37.500 0.00 0.00 43.56 2.85
234 235 5.450818 AACAAAGATAGGGCATCTAACCA 57.549 39.130 0.00 0.00 43.56 3.67
241 242 3.199880 AGGGCATCTAACCAAATCGAG 57.800 47.619 0.00 0.00 0.00 4.04
351 353 5.654497 GGGTTTATGCTCTTTCCATTTCAG 58.346 41.667 0.00 0.00 0.00 3.02
408 410 1.812922 CATGCTCTCGACCTGCACC 60.813 63.158 4.66 0.00 39.63 5.01
494 501 9.411801 GAGTTTTTCTCTTTTTCTTGACAAACT 57.588 29.630 0.00 0.00 40.12 2.66
500 507 7.335627 TCTCTTTTTCTTGACAAACTACTCCA 58.664 34.615 0.00 0.00 0.00 3.86
502 509 6.317893 TCTTTTTCTTGACAAACTACTCCACC 59.682 38.462 0.00 0.00 0.00 4.61
503 510 5.367945 TTTCTTGACAAACTACTCCACCT 57.632 39.130 0.00 0.00 0.00 4.00
541 591 1.674611 CGTGAGACGCACCGTGAATC 61.675 60.000 1.65 0.00 44.85 2.52
543 593 1.080093 GAGACGCACCGTGAATCCA 60.080 57.895 1.65 0.00 41.37 3.41
547 597 1.745115 CGCACCGTGAATCCACCAT 60.745 57.895 1.65 0.00 40.12 3.55
674 725 1.630148 CTCATCCAGGACGAACGAAC 58.370 55.000 0.00 0.00 0.00 3.95
692 752 2.955402 GTCGAGGAGCACGTCACT 59.045 61.111 4.76 0.00 0.00 3.41
693 753 1.286260 GTCGAGGAGCACGTCACTT 59.714 57.895 4.76 0.00 0.00 3.16
695 755 1.444553 CGAGGAGCACGTCACTTCC 60.445 63.158 4.76 0.00 0.00 3.46
696 756 1.444553 GAGGAGCACGTCACTTCCG 60.445 63.158 0.00 0.00 0.00 4.30
697 757 2.143594 GAGGAGCACGTCACTTCCGT 62.144 60.000 0.00 0.00 39.52 4.69
699 759 1.007734 GAGCACGTCACTTCCGTCA 60.008 57.895 0.00 0.00 36.17 4.35
701 761 1.590525 GCACGTCACTTCCGTCACA 60.591 57.895 0.00 0.00 36.17 3.58
702 762 1.548973 GCACGTCACTTCCGTCACAG 61.549 60.000 0.00 0.00 36.17 3.66
703 763 0.939577 CACGTCACTTCCGTCACAGG 60.940 60.000 0.00 0.00 36.17 4.00
704 764 1.372997 CGTCACTTCCGTCACAGGG 60.373 63.158 0.00 0.00 0.00 4.45
705 765 1.668151 GTCACTTCCGTCACAGGGC 60.668 63.158 0.00 0.00 0.00 5.19
706 766 2.137528 TCACTTCCGTCACAGGGCA 61.138 57.895 0.00 0.00 0.00 5.36
707 767 1.961277 CACTTCCGTCACAGGGCAC 60.961 63.158 0.00 0.00 0.00 5.01
708 768 2.140792 ACTTCCGTCACAGGGCACT 61.141 57.895 0.00 0.00 0.00 4.40
789 854 2.698060 GCTATAAAGCCCGGTCTCCGA 61.698 57.143 9.86 0.00 46.00 4.55
1073 1155 1.076995 GCCTGCCCCTTCCGTTATT 60.077 57.895 0.00 0.00 0.00 1.40
1078 1160 2.163613 CTGCCCCTTCCGTTATTTCAAC 59.836 50.000 0.00 0.00 0.00 3.18
1099 1181 0.589729 CGAATTTCGCATCCAAGCCG 60.590 55.000 5.78 0.00 31.14 5.52
1126 1208 4.582701 AATTTTCCGTGTCTGCAATTGA 57.417 36.364 10.34 0.00 0.00 2.57
1184 1267 6.093495 CACTTCACTCTTGTGTTCTTAACCAA 59.907 38.462 0.00 0.00 44.14 3.67
1185 1268 6.828785 ACTTCACTCTTGTGTTCTTAACCAAT 59.171 34.615 0.00 0.00 44.14 3.16
1186 1269 7.990886 ACTTCACTCTTGTGTTCTTAACCAATA 59.009 33.333 0.00 0.00 44.14 1.90
1187 1270 7.962964 TCACTCTTGTGTTCTTAACCAATAG 57.037 36.000 0.00 0.00 44.14 1.73
1188 1271 7.506114 TCACTCTTGTGTTCTTAACCAATAGT 58.494 34.615 0.00 0.00 44.14 2.12
1189 1272 7.990886 TCACTCTTGTGTTCTTAACCAATAGTT 59.009 33.333 0.00 0.00 44.14 2.24
1190 1273 8.621286 CACTCTTGTGTTCTTAACCAATAGTTT 58.379 33.333 0.00 0.00 38.34 2.66
1191 1274 9.841295 ACTCTTGTGTTCTTAACCAATAGTTTA 57.159 29.630 0.00 0.00 40.05 2.01
1193 1276 9.841295 TCTTGTGTTCTTAACCAATAGTTTAGT 57.159 29.630 0.00 0.00 40.05 2.24
1196 1279 9.616156 TGTGTTCTTAACCAATAGTTTAGTTGA 57.384 29.630 0.00 0.00 40.05 3.18
1197 1280 9.874215 GTGTTCTTAACCAATAGTTTAGTTGAC 57.126 33.333 0.00 0.00 40.05 3.18
1198 1281 9.059260 TGTTCTTAACCAATAGTTTAGTTGACC 57.941 33.333 0.00 0.00 40.05 4.02
1199 1282 8.509690 GTTCTTAACCAATAGTTTAGTTGACCC 58.490 37.037 0.00 0.00 40.05 4.46
1200 1283 7.170277 TCTTAACCAATAGTTTAGTTGACCCC 58.830 38.462 0.00 0.00 40.05 4.95
1201 1284 4.311520 ACCAATAGTTTAGTTGACCCCC 57.688 45.455 0.00 0.00 0.00 5.40
1202 1285 3.920841 ACCAATAGTTTAGTTGACCCCCT 59.079 43.478 0.00 0.00 0.00 4.79
1203 1286 5.102967 ACCAATAGTTTAGTTGACCCCCTA 58.897 41.667 0.00 0.00 0.00 3.53
1204 1287 5.552766 ACCAATAGTTTAGTTGACCCCCTAA 59.447 40.000 0.00 0.00 0.00 2.69
1205 1288 6.045813 ACCAATAGTTTAGTTGACCCCCTAAA 59.954 38.462 0.00 0.00 32.29 1.85
1206 1289 6.949463 CCAATAGTTTAGTTGACCCCCTAAAA 59.051 38.462 0.00 0.00 35.54 1.52
1207 1290 7.452189 CCAATAGTTTAGTTGACCCCCTAAAAA 59.548 37.037 0.00 0.00 35.54 1.94
1261 1344 2.737467 TCTGCGCGAATTTTGATAGC 57.263 45.000 12.10 0.00 0.00 2.97
1393 1479 7.603024 GTGGTATGAACTATTATTACTGCTCCC 59.397 40.741 0.00 0.00 0.00 4.30
1396 1482 6.085555 TGAACTATTATTACTGCTCCCTCG 57.914 41.667 0.00 0.00 0.00 4.63
1399 1485 4.528596 ACTATTATTACTGCTCCCTCGCAT 59.471 41.667 0.00 0.00 39.52 4.73
1483 1570 8.050750 CGTGATGTAATTCTCTTATTCACGTTC 58.949 37.037 12.46 0.00 41.17 3.95
1495 1586 9.314321 CTCTTATTCACGTTCTGGTGTATAAAT 57.686 33.333 0.00 0.00 38.68 1.40
1503 1594 8.708742 CACGTTCTGGTGTATAAATATGTATGG 58.291 37.037 0.00 0.00 33.24 2.74
1616 1872 8.441608 GTTCTGCTAAATATGCATAGTCATCAG 58.558 37.037 12.79 15.18 39.86 2.90
1635 1891 8.230486 GTCATCAGACTAGTTTGTGGTTTATTG 58.770 37.037 12.73 1.47 41.64 1.90
1655 1911 3.772387 TGGGACCAGCATTTGTGATTAA 58.228 40.909 0.00 0.00 0.00 1.40
1660 1916 5.329035 ACCAGCATTTGTGATTAACATCC 57.671 39.130 0.00 0.00 38.99 3.51
1661 1917 4.142403 ACCAGCATTTGTGATTAACATCCG 60.142 41.667 0.00 0.00 38.99 4.18
1688 1944 7.824779 AGTTGTCTAGACATGGAGAAAATTACC 59.175 37.037 25.68 2.75 41.52 2.85
1727 1989 3.194542 TGGAGTTGGACAACCTGTTTTTG 59.805 43.478 11.28 0.00 42.06 2.44
1773 2035 2.401017 TGACTTCTGACTCGTGTTCG 57.599 50.000 0.00 0.00 38.55 3.95
1797 2059 6.475402 CGAGTTTTATTTAAATCCCCATGTGC 59.525 38.462 3.39 0.00 0.00 4.57
1799 2061 7.102993 AGTTTTATTTAAATCCCCATGTGCAC 58.897 34.615 10.75 10.75 0.00 4.57
1800 2062 3.799281 ATTTAAATCCCCATGTGCACG 57.201 42.857 13.13 0.00 0.00 5.34
1803 2065 0.251564 AAATCCCCATGTGCACGGAA 60.252 50.000 13.13 0.00 0.00 4.30
1804 2066 0.965363 AATCCCCATGTGCACGGAAC 60.965 55.000 13.13 0.00 0.00 3.62
1806 2068 2.040544 CCCCATGTGCACGGAACTC 61.041 63.158 13.13 0.00 0.00 3.01
1807 2069 2.390599 CCCATGTGCACGGAACTCG 61.391 63.158 13.13 0.00 45.88 4.18
1808 2070 2.476051 CATGTGCACGGAACTCGC 59.524 61.111 13.13 0.00 43.89 5.03
1809 2071 2.029288 CATGTGCACGGAACTCGCT 61.029 57.895 13.13 0.00 43.89 4.93
1810 2072 1.738099 ATGTGCACGGAACTCGCTC 60.738 57.895 13.13 0.00 43.89 5.03
1811 2073 2.355837 GTGCACGGAACTCGCTCA 60.356 61.111 0.00 0.00 43.89 4.26
1813 2075 1.005037 TGCACGGAACTCGCTCAAT 60.005 52.632 0.00 0.00 43.89 2.57
1833 2171 0.669619 TGTACACGGAACTCGCTCAA 59.330 50.000 0.00 0.00 43.89 3.02
1870 2208 6.627087 ACAAGGACCAGGGTATGATATATG 57.373 41.667 0.00 0.00 0.00 1.78
1880 2218 5.251468 AGGGTATGATATATGTGCACATGGT 59.749 40.000 36.72 27.21 37.15 3.55
2077 2416 8.512138 ACAAGGTAAATGTGTGCTTAATACTTC 58.488 33.333 0.00 0.00 0.00 3.01
2078 2417 8.730680 CAAGGTAAATGTGTGCTTAATACTTCT 58.269 33.333 0.00 0.00 0.00 2.85
2119 2463 3.817647 GTGTCTCTGTTTCAGGCTGAAAT 59.182 43.478 36.92 0.00 46.55 2.17
2139 2484 8.312896 TGAAATAACGATTGCTTTAGTGTACA 57.687 30.769 0.00 0.00 0.00 2.90
2179 2524 4.122776 GCGTCCATGAACAGTCATTATCT 58.877 43.478 0.00 0.00 42.03 1.98
2207 2552 3.119101 TCGAGGAAAGCTAGTCCAACATC 60.119 47.826 16.62 6.30 37.65 3.06
2237 2582 3.141398 AGTTTGTATGCAGTCTGTGTGG 58.859 45.455 0.93 0.00 0.00 4.17
2242 2587 5.262588 TGTATGCAGTCTGTGTGGTATAG 57.737 43.478 0.93 0.00 0.00 1.31
2275 2634 3.684305 CGCTGTTGGTTATCAGACATTCA 59.316 43.478 0.00 0.00 34.02 2.57
2289 2648 6.450545 TCAGACATTCAGACTTCAGTTGTAG 58.549 40.000 0.00 0.00 0.00 2.74
2290 2649 5.119898 CAGACATTCAGACTTCAGTTGTAGC 59.880 44.000 0.00 0.00 0.00 3.58
2291 2650 4.960938 ACATTCAGACTTCAGTTGTAGCA 58.039 39.130 0.00 0.00 0.00 3.49
2292 2651 5.368145 ACATTCAGACTTCAGTTGTAGCAA 58.632 37.500 0.00 0.00 0.00 3.91
2293 2652 5.237344 ACATTCAGACTTCAGTTGTAGCAAC 59.763 40.000 4.02 4.02 0.00 4.17
2294 2653 4.672587 TCAGACTTCAGTTGTAGCAACT 57.327 40.909 8.53 8.53 0.00 3.16
2295 2654 5.784578 TCAGACTTCAGTTGTAGCAACTA 57.215 39.130 13.27 0.23 0.00 2.24
2399 2758 0.179078 CAGAGAGGCAAGCAGCTAGG 60.179 60.000 0.00 0.00 44.79 3.02
2411 2770 4.457834 AGCAGCTAGGTGTACTAACTTG 57.542 45.455 22.21 0.00 0.00 3.16
2420 2779 4.900054 AGGTGTACTAACTTGACTTCCACT 59.100 41.667 0.00 0.00 0.00 4.00
2616 2975 2.667473 GGTAAGTACCGACAGTGCAT 57.333 50.000 0.00 0.00 36.50 3.96
2719 3078 1.068474 GCTGCTCGCGAGTTCTTAAA 58.932 50.000 34.46 12.55 0.00 1.52
2765 3124 2.437359 GGTGCATCGCCTGAAGCT 60.437 61.111 0.00 0.00 39.50 3.74
2874 3233 1.977129 GCTGCAGAGATATCCCCTCTT 59.023 52.381 20.43 0.00 38.84 2.85
2902 3261 4.384547 GTGTTTTTGTTGTGGTTGTGAGAC 59.615 41.667 0.00 0.00 0.00 3.36
2907 3266 2.213499 GTTGTGGTTGTGAGACTCCTG 58.787 52.381 0.00 0.00 0.00 3.86
2912 3271 1.270893 GGTTGTGAGACTCCTGTTCCC 60.271 57.143 0.00 0.00 0.00 3.97
2939 3298 3.981211 ACAAGTTTGGAATGTGATGCAC 58.019 40.909 0.00 0.00 34.56 4.57
2953 3312 0.944386 ATGCACACCTGTTGTTCGTC 59.056 50.000 0.00 0.00 35.67 4.20
2957 3316 0.544697 ACACCTGTTGTTCGTCCCTT 59.455 50.000 0.00 0.00 33.09 3.95
2967 3326 1.528161 GTTCGTCCCTTTGTGTTACCG 59.472 52.381 0.00 0.00 0.00 4.02
2974 3333 1.199097 CCTTTGTGTTACCGATGGTGC 59.801 52.381 0.00 0.00 36.19 5.01
2979 3338 0.033642 TGTTACCGATGGTGCGTTCA 59.966 50.000 0.00 0.00 36.19 3.18
2987 3346 2.595386 GATGGTGCGTTCATTGGAAAC 58.405 47.619 0.00 0.00 34.13 2.78
3230 3590 3.096852 TGGAAGAGGCTTCGTGAAGATA 58.903 45.455 13.60 0.00 40.79 1.98
3315 3675 6.103997 TCCCGTACAAAATGATAGTCAACTC 58.896 40.000 0.00 0.00 0.00 3.01
3346 3706 1.069978 TGTCCGAGCATGAAACACTGA 59.930 47.619 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.093764 GGGGATCATGGATCAGATCGAC 60.094 54.545 4.23 9.61 40.50 4.20
1 2 2.182827 GGGGATCATGGATCAGATCGA 58.817 52.381 4.23 0.51 40.50 3.59
2 3 1.904537 TGGGGATCATGGATCAGATCG 59.095 52.381 4.23 0.00 40.50 3.69
3 4 4.227754 AGATTGGGGATCATGGATCAGATC 59.772 45.833 1.18 1.18 40.50 2.75
4 5 4.184716 AGATTGGGGATCATGGATCAGAT 58.815 43.478 8.35 0.00 40.50 2.90
5 6 3.605879 AGATTGGGGATCATGGATCAGA 58.394 45.455 8.35 0.00 40.50 3.27
6 7 4.043059 AGAAGATTGGGGATCATGGATCAG 59.957 45.833 8.35 0.00 40.50 2.90
7 8 3.985452 AGAAGATTGGGGATCATGGATCA 59.015 43.478 8.35 0.00 40.50 2.92
8 9 4.654389 AGAAGATTGGGGATCATGGATC 57.346 45.455 0.00 0.00 38.25 3.36
9 10 4.668812 AGAAGAAGATTGGGGATCATGGAT 59.331 41.667 0.00 0.00 37.22 3.41
10 11 4.050037 AGAAGAAGATTGGGGATCATGGA 58.950 43.478 0.00 0.00 37.22 3.41
11 12 4.450305 AGAAGAAGATTGGGGATCATGG 57.550 45.455 0.00 0.00 37.22 3.66
12 13 6.599445 AGTTAGAAGAAGATTGGGGATCATG 58.401 40.000 0.00 0.00 37.22 3.07
13 14 6.838401 AGTTAGAAGAAGATTGGGGATCAT 57.162 37.500 0.00 0.00 37.22 2.45
14 15 6.445139 AGAAGTTAGAAGAAGATTGGGGATCA 59.555 38.462 0.00 0.00 37.22 2.92
15 16 6.894682 AGAAGTTAGAAGAAGATTGGGGATC 58.105 40.000 0.00 0.00 34.83 3.36
16 17 6.899892 AGAAGTTAGAAGAAGATTGGGGAT 57.100 37.500 0.00 0.00 0.00 3.85
17 18 6.704056 AAGAAGTTAGAAGAAGATTGGGGA 57.296 37.500 0.00 0.00 0.00 4.81
18 19 6.540551 GCTAAGAAGTTAGAAGAAGATTGGGG 59.459 42.308 0.00 0.00 38.39 4.96
19 20 7.106239 TGCTAAGAAGTTAGAAGAAGATTGGG 58.894 38.462 0.00 0.00 38.39 4.12
20 21 8.610896 CATGCTAAGAAGTTAGAAGAAGATTGG 58.389 37.037 0.00 0.00 38.39 3.16
21 22 8.610896 CCATGCTAAGAAGTTAGAAGAAGATTG 58.389 37.037 0.00 0.00 38.39 2.67
22 23 8.543774 TCCATGCTAAGAAGTTAGAAGAAGATT 58.456 33.333 0.00 0.00 38.39 2.40
23 24 7.984617 GTCCATGCTAAGAAGTTAGAAGAAGAT 59.015 37.037 0.00 0.00 38.39 2.40
24 25 7.324178 GTCCATGCTAAGAAGTTAGAAGAAGA 58.676 38.462 0.00 0.00 38.39 2.87
25 26 6.254589 CGTCCATGCTAAGAAGTTAGAAGAAG 59.745 42.308 0.00 0.00 38.39 2.85
26 27 6.100004 CGTCCATGCTAAGAAGTTAGAAGAA 58.900 40.000 0.00 0.00 38.39 2.52
27 28 5.651530 CGTCCATGCTAAGAAGTTAGAAGA 58.348 41.667 0.00 0.00 38.39 2.87
28 29 4.268884 GCGTCCATGCTAAGAAGTTAGAAG 59.731 45.833 0.00 0.00 38.39 2.85
29 30 4.181578 GCGTCCATGCTAAGAAGTTAGAA 58.818 43.478 0.00 0.00 38.39 2.10
30 31 3.194755 TGCGTCCATGCTAAGAAGTTAGA 59.805 43.478 0.00 0.00 38.39 2.10
62 63 6.821388 AGGTGCGAAAGATGTTAGATATCTT 58.179 36.000 11.25 0.00 44.47 2.40
67 68 4.832248 TCAAGGTGCGAAAGATGTTAGAT 58.168 39.130 0.00 0.00 0.00 1.98
68 69 4.265904 TCAAGGTGCGAAAGATGTTAGA 57.734 40.909 0.00 0.00 0.00 2.10
74 75 1.098050 GCCATCAAGGTGCGAAAGAT 58.902 50.000 0.00 0.00 40.61 2.40
75 76 0.250684 TGCCATCAAGGTGCGAAAGA 60.251 50.000 0.00 0.00 40.61 2.52
79 80 0.821301 TGTTTGCCATCAAGGTGCGA 60.821 50.000 0.00 0.00 40.61 5.10
88 89 0.379669 CGAGCATCCTGTTTGCCATC 59.620 55.000 0.00 0.00 41.06 3.51
98 99 0.749454 GGTCAAATGGCGAGCATCCT 60.749 55.000 0.00 0.00 0.00 3.24
102 103 2.535485 ATCGGGTCAAATGGCGAGCA 62.535 55.000 0.00 0.00 32.48 4.26
103 104 0.531974 TATCGGGTCAAATGGCGAGC 60.532 55.000 0.00 0.00 0.00 5.03
105 106 1.140052 ACATATCGGGTCAAATGGCGA 59.860 47.619 0.00 0.00 0.00 5.54
116 117 4.137116 TCCTCAAAACAGACATATCGGG 57.863 45.455 0.00 0.00 0.00 5.14
132 133 2.158219 TCCGGGATAAAGGCTATCCTCA 60.158 50.000 14.45 0.00 43.40 3.86
133 134 2.537143 TCCGGGATAAAGGCTATCCTC 58.463 52.381 14.45 5.76 43.40 3.71
136 137 3.056035 ACGATTCCGGGATAAAGGCTATC 60.056 47.826 0.00 0.00 40.78 2.08
137 138 2.904434 ACGATTCCGGGATAAAGGCTAT 59.096 45.455 0.00 0.00 40.78 2.97
138 139 2.322658 ACGATTCCGGGATAAAGGCTA 58.677 47.619 0.00 0.00 40.78 3.93
139 140 1.129058 ACGATTCCGGGATAAAGGCT 58.871 50.000 0.00 0.00 40.78 4.58
140 141 1.871676 GAACGATTCCGGGATAAAGGC 59.128 52.381 0.00 0.00 40.78 4.35
141 142 2.132762 CGAACGATTCCGGGATAAAGG 58.867 52.381 0.00 0.00 40.78 3.11
142 143 3.088194 TCGAACGATTCCGGGATAAAG 57.912 47.619 0.00 0.00 40.78 1.85
143 144 3.068448 TCATCGAACGATTCCGGGATAAA 59.932 43.478 0.00 0.00 40.78 1.40
144 145 2.624364 TCATCGAACGATTCCGGGATAA 59.376 45.455 0.00 0.00 40.78 1.75
145 146 2.232399 TCATCGAACGATTCCGGGATA 58.768 47.619 0.00 0.00 40.78 2.59
146 147 1.037493 TCATCGAACGATTCCGGGAT 58.963 50.000 0.00 0.00 40.78 3.85
147 148 1.000607 GATCATCGAACGATTCCGGGA 60.001 52.381 0.00 0.00 40.78 5.14
148 149 1.419374 GATCATCGAACGATTCCGGG 58.581 55.000 0.00 0.00 40.78 5.73
149 150 1.269569 TGGATCATCGAACGATTCCGG 60.270 52.381 17.33 0.00 40.78 5.14
150 151 2.134201 TGGATCATCGAACGATTCCG 57.866 50.000 17.33 5.47 35.40 4.30
222 223 3.194005 TCTCGATTTGGTTAGATGCCC 57.806 47.619 0.00 0.00 0.00 5.36
225 226 3.555956 CGGGTTCTCGATTTGGTTAGATG 59.444 47.826 0.00 0.00 0.00 2.90
233 234 0.165944 GTGCACGGGTTCTCGATTTG 59.834 55.000 0.00 0.00 0.00 2.32
234 235 0.250124 TGTGCACGGGTTCTCGATTT 60.250 50.000 13.13 0.00 0.00 2.17
241 242 1.285641 CCATTGTGTGCACGGGTTC 59.714 57.895 13.13 0.86 0.00 3.62
351 353 0.874390 TTGATCTGAGGCAAACACGC 59.126 50.000 0.00 0.00 0.00 5.34
408 410 2.452813 CGGAACCTTCGATGCCGTG 61.453 63.158 0.00 0.00 37.35 4.94
494 501 2.285368 CCCAGGCCAGGTGGAGTA 60.285 66.667 13.97 0.00 37.23 2.59
497 504 4.938756 AACCCCAGGCCAGGTGGA 62.939 66.667 23.04 0.00 37.23 4.02
498 505 4.366684 GAACCCCAGGCCAGGTGG 62.367 72.222 13.97 15.71 36.19 4.61
502 509 4.101448 CTCGGAACCCCAGGCCAG 62.101 72.222 5.01 0.00 0.00 4.85
671 722 2.254651 ACGTGCTCCTCGACGTTC 59.745 61.111 0.00 0.00 46.27 3.95
674 725 2.459421 AAGTGACGTGCTCCTCGACG 62.459 60.000 0.00 0.00 41.41 5.12
692 752 2.741092 GAGTGCCCTGTGACGGAA 59.259 61.111 0.00 0.00 0.00 4.30
693 753 3.680786 CGAGTGCCCTGTGACGGA 61.681 66.667 0.00 0.00 0.00 4.69
695 755 3.220999 TTCCGAGTGCCCTGTGACG 62.221 63.158 0.00 0.00 0.00 4.35
696 756 1.668151 GTTCCGAGTGCCCTGTGAC 60.668 63.158 0.00 0.00 0.00 3.67
697 757 2.741092 GTTCCGAGTGCCCTGTGA 59.259 61.111 0.00 0.00 0.00 3.58
699 759 4.681978 GCGTTCCGAGTGCCCTGT 62.682 66.667 0.00 0.00 0.00 4.00
701 761 3.469863 TTTGCGTTCCGAGTGCCCT 62.470 57.895 0.00 0.00 0.00 5.19
702 762 2.966309 CTTTGCGTTCCGAGTGCCC 61.966 63.158 0.00 0.00 0.00 5.36
703 763 2.171489 GACTTTGCGTTCCGAGTGCC 62.171 60.000 0.00 0.00 0.00 5.01
704 764 1.204312 GACTTTGCGTTCCGAGTGC 59.796 57.895 0.00 0.00 0.00 4.40
705 765 0.937699 TCGACTTTGCGTTCCGAGTG 60.938 55.000 0.00 0.00 0.00 3.51
706 766 0.249155 TTCGACTTTGCGTTCCGAGT 60.249 50.000 0.00 0.00 0.00 4.18
707 767 0.435008 CTTCGACTTTGCGTTCCGAG 59.565 55.000 0.00 0.00 0.00 4.63
708 768 1.554042 GCTTCGACTTTGCGTTCCGA 61.554 55.000 0.00 0.00 0.00 4.55
789 854 3.142393 CGAGAAGGCATCGGGGAT 58.858 61.111 0.00 0.00 36.54 3.85
829 894 2.982130 GCTTCTCAGGAGGCGGAA 59.018 61.111 0.00 0.00 34.98 4.30
851 916 3.148279 CGGAGGAAGGGGAGACGG 61.148 72.222 0.00 0.00 0.00 4.79
1073 1155 1.470890 GGATGCGAAATTCGGGTTGAA 59.529 47.619 17.49 0.00 40.84 2.69
1078 1160 0.248621 GCTTGGATGCGAAATTCGGG 60.249 55.000 17.49 0.00 40.84 5.14
1099 1181 2.053627 CAGACACGGAAAATTTGCAGC 58.946 47.619 0.00 0.00 0.00 5.25
1104 1186 4.942852 TCAATTGCAGACACGGAAAATTT 58.057 34.783 0.00 0.00 0.00 1.82
1148 1231 0.247736 AGTGAAGTGACAGCGGGATC 59.752 55.000 0.00 0.00 0.00 3.36
1209 1292 9.783256 GAGTCAACTAAACTATTGTTTGTTTGT 57.217 29.630 14.41 6.25 45.01 2.83
1212 1295 9.174166 ACAGAGTCAACTAAACTATTGTTTGTT 57.826 29.630 14.41 12.75 45.01 2.83
1213 1296 8.732746 ACAGAGTCAACTAAACTATTGTTTGT 57.267 30.769 14.41 8.29 45.01 2.83
1261 1344 5.399301 CACAAAATGAAGCGTTCCTTTAGTG 59.601 40.000 0.00 0.00 32.78 2.74
1298 1384 2.996621 CAGGTCGACATCTTTTCCACTC 59.003 50.000 18.91 0.00 0.00 3.51
1460 1547 8.543774 CCAGAACGTGAATAAGAGAATTACATC 58.456 37.037 0.00 0.00 0.00 3.06
1479 1566 8.708742 CACCATACATATTTATACACCAGAACG 58.291 37.037 0.00 0.00 0.00 3.95
1483 1570 8.902540 ACACACCATACATATTTATACACCAG 57.097 34.615 0.00 0.00 0.00 4.00
1616 1872 5.182570 GGTCCCAATAAACCACAAACTAGTC 59.817 44.000 0.00 0.00 35.53 2.59
1631 1887 3.448093 TCACAAATGCTGGTCCCAATA 57.552 42.857 0.00 0.00 0.00 1.90
1635 1891 3.509575 TGTTAATCACAAATGCTGGTCCC 59.490 43.478 0.00 0.00 29.87 4.46
1655 1911 3.131223 CCATGTCTAGACAACTCGGATGT 59.869 47.826 28.43 6.83 45.41 3.06
1660 1916 4.703645 TTCTCCATGTCTAGACAACTCG 57.296 45.455 28.43 16.96 45.41 4.18
1661 1917 7.913674 AATTTTCTCCATGTCTAGACAACTC 57.086 36.000 28.43 0.00 45.41 3.01
1688 1944 3.891366 ACTCCAAAACCAACTTGATCAGG 59.109 43.478 2.78 2.78 0.00 3.86
1727 1989 6.250819 GTCATGACACTTAATATGCACACAC 58.749 40.000 21.07 0.00 0.00 3.82
1773 2035 7.277760 GTGCACATGGGGATTTAAATAAAACTC 59.722 37.037 13.17 0.00 0.00 3.01
1786 2048 1.378514 GTTCCGTGCACATGGGGAT 60.379 57.895 18.64 0.00 38.05 3.85
1797 2059 1.148310 ACAATTGAGCGAGTTCCGTG 58.852 50.000 13.59 0.00 41.15 4.94
1799 2061 2.092211 GTGTACAATTGAGCGAGTTCCG 59.908 50.000 13.59 0.00 42.21 4.30
1800 2062 2.092211 CGTGTACAATTGAGCGAGTTCC 59.908 50.000 13.59 0.00 0.00 3.62
1803 2065 1.271379 TCCGTGTACAATTGAGCGAGT 59.729 47.619 13.59 0.00 0.00 4.18
1804 2066 1.990799 TCCGTGTACAATTGAGCGAG 58.009 50.000 13.59 0.42 0.00 5.03
1806 2068 2.066262 AGTTCCGTGTACAATTGAGCG 58.934 47.619 13.59 10.06 0.00 5.03
1807 2069 2.092211 CGAGTTCCGTGTACAATTGAGC 59.908 50.000 13.59 4.79 0.00 4.26
1808 2070 2.092211 GCGAGTTCCGTGTACAATTGAG 59.908 50.000 13.59 0.00 41.15 3.02
1809 2071 2.063266 GCGAGTTCCGTGTACAATTGA 58.937 47.619 13.59 0.00 41.15 2.57
1810 2072 2.066262 AGCGAGTTCCGTGTACAATTG 58.934 47.619 3.24 3.24 41.15 2.32
1811 2073 2.288579 TGAGCGAGTTCCGTGTACAATT 60.289 45.455 0.00 0.00 41.15 2.32
1813 2075 0.669619 TGAGCGAGTTCCGTGTACAA 59.330 50.000 0.00 0.00 41.15 2.41
1870 2208 1.812571 CAGGGACTAAACCATGTGCAC 59.187 52.381 10.75 10.75 36.02 4.57
1927 2265 2.814336 GGATCTCAAAACCTGTGGTCAC 59.186 50.000 0.00 0.00 33.12 3.67
1986 2324 4.155826 TGAACAATTTCCTCATTAGTGCCG 59.844 41.667 0.00 0.00 0.00 5.69
2077 2416 8.763049 AGACACAAAAAGGAAAAGAAAGAAAG 57.237 30.769 0.00 0.00 0.00 2.62
2078 2417 8.585018 AGAGACACAAAAAGGAAAAGAAAGAAA 58.415 29.630 0.00 0.00 0.00 2.52
2119 2463 6.702723 ACACTTGTACACTAAAGCAATCGTTA 59.297 34.615 0.00 0.00 0.00 3.18
2179 2524 4.020573 TGGACTAGCTTTCCTCGATCAAAA 60.021 41.667 13.70 0.00 33.84 2.44
2207 2552 6.309980 CAGACTGCATACAAACTAGAGAACAG 59.690 42.308 0.00 0.00 0.00 3.16
2237 2582 5.460419 CCAACAGCGATTTCAGAGTCTATAC 59.540 44.000 0.00 0.00 0.00 1.47
2242 2587 2.417719 ACCAACAGCGATTTCAGAGTC 58.582 47.619 0.00 0.00 0.00 3.36
2275 2634 4.039245 TGCTAGTTGCTACAACTGAAGTCT 59.961 41.667 20.32 0.00 43.37 3.24
2289 2648 3.142174 AGGAAAGTCAGTTGCTAGTTGC 58.858 45.455 0.00 0.00 43.25 4.17
2290 2649 5.529060 AGAAAGGAAAGTCAGTTGCTAGTTG 59.471 40.000 0.00 0.00 0.00 3.16
2291 2650 5.685728 AGAAAGGAAAGTCAGTTGCTAGTT 58.314 37.500 0.00 0.00 0.00 2.24
2292 2651 5.297569 AGAAAGGAAAGTCAGTTGCTAGT 57.702 39.130 0.00 0.00 0.00 2.57
2293 2652 6.484977 AGAAAGAAAGGAAAGTCAGTTGCTAG 59.515 38.462 0.00 0.00 0.00 3.42
2294 2653 6.260936 CAGAAAGAAAGGAAAGTCAGTTGCTA 59.739 38.462 0.00 0.00 0.00 3.49
2295 2654 5.067023 CAGAAAGAAAGGAAAGTCAGTTGCT 59.933 40.000 0.00 0.00 0.00 3.91
2376 2735 1.138661 AGCTGCTTGCCTCTCTGATAC 59.861 52.381 0.00 0.00 44.23 2.24
2399 2758 7.755822 CAGATAGTGGAAGTCAAGTTAGTACAC 59.244 40.741 0.00 0.00 0.00 2.90
2411 2770 4.220821 TCAACCTGACAGATAGTGGAAGTC 59.779 45.833 3.32 0.00 0.00 3.01
2420 2779 5.045651 ACCATTGACATCAACCTGACAGATA 60.046 40.000 3.32 0.00 38.86 1.98
2483 2842 0.036875 CCCCGAAGAGACTGCCTTTT 59.963 55.000 0.00 0.00 0.00 2.27
2616 2975 7.123098 AGTTTGATCATCAAATGGAGCACATAA 59.877 33.333 15.91 0.00 46.55 1.90
2874 3233 6.071896 TCACAACCACAACAAAAACACAGATA 60.072 34.615 0.00 0.00 0.00 1.98
2912 3271 3.563808 TCACATTCCAAACTTGTTCCTCG 59.436 43.478 0.00 0.00 0.00 4.63
2939 3298 1.333619 CAAAGGGACGAACAACAGGTG 59.666 52.381 0.00 0.00 0.00 4.00
2942 3301 2.014128 ACACAAAGGGACGAACAACAG 58.986 47.619 0.00 0.00 0.00 3.16
2953 3312 1.810151 CACCATCGGTAACACAAAGGG 59.190 52.381 0.00 0.00 32.11 3.95
2957 3316 0.249953 ACGCACCATCGGTAACACAA 60.250 50.000 0.00 0.00 32.11 3.33
2967 3326 2.228822 AGTTTCCAATGAACGCACCATC 59.771 45.455 0.00 0.00 32.38 3.51
2974 3333 5.804979 ACAACAGAAAAGTTTCCAATGAACG 59.195 36.000 0.13 0.00 37.92 3.95
2979 3338 8.931775 GTGTTTAACAACAGAAAAGTTTCCAAT 58.068 29.630 0.00 0.00 43.83 3.16
2987 3346 7.883229 AACCTTGTGTTTAACAACAGAAAAG 57.117 32.000 0.00 0.00 43.54 2.27
3230 3590 4.015084 CCTCCAAAGATCAACTTGCTGAT 58.985 43.478 0.00 0.00 38.98 2.90
3315 3675 1.009829 GCTCGGACAAAGCACATAGG 58.990 55.000 0.00 0.00 39.61 2.57
3346 3706 8.891985 TGGAGCTACATATCTCTCATCTAATT 57.108 34.615 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.