Multiple sequence alignment - TraesCS6B01G277700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G277700 chr6B 100.000 4004 0 0 1 4004 502487965 502483962 0.000000e+00 7395.0
1 TraesCS6B01G277700 chr6B 92.857 42 3 0 668 709 57286838 57286797 1.200000e-05 62.1
2 TraesCS6B01G277700 chr6D 93.395 3785 169 42 249 3992 320224837 320228581 0.000000e+00 5529.0
3 TraesCS6B01G277700 chr6A 95.265 2471 97 9 886 3343 457682918 457685381 0.000000e+00 3897.0
4 TraesCS6B01G277700 chr6A 92.504 627 36 6 3387 4004 457685763 457686387 0.000000e+00 887.0
5 TraesCS6B01G277700 chr6A 95.588 136 5 1 742 876 457679656 457679791 2.420000e-52 217.0
6 TraesCS6B01G277700 chr6A 85.185 54 6 2 668 720 575239785 575239733 2.000000e-03 54.7
7 TraesCS6B01G277700 chr2D 83.333 276 44 2 3543 3817 523028490 523028764 1.850000e-63 254.0
8 TraesCS6B01G277700 chr2D 76.033 242 54 4 3578 3817 220670866 220671105 5.430000e-24 122.0
9 TraesCS6B01G277700 chr2B 83.273 275 46 0 3543 3817 616934591 616934865 1.850000e-63 254.0
10 TraesCS6B01G277700 chr2B 76.033 242 52 6 3579 3817 290519758 290519996 1.950000e-23 121.0
11 TraesCS6B01G277700 chr2A 83.333 276 44 2 3543 3817 668242743 668243017 1.850000e-63 254.0
12 TraesCS6B01G277700 chr4D 84.211 95 15 0 3724 3818 387441858 387441952 4.260000e-15 93.5
13 TraesCS6B01G277700 chr4B 84.211 95 15 0 3724 3818 475811323 475811417 4.260000e-15 93.5
14 TraesCS6B01G277700 chr4B 87.500 56 2 5 665 717 541473640 541473587 4.320000e-05 60.2
15 TraesCS6B01G277700 chr4A 84.211 95 15 0 3724 3818 68689450 68689544 4.260000e-15 93.5
16 TraesCS6B01G277700 chr4A 89.796 49 1 2 668 715 69316853 69316808 4.320000e-05 60.2
17 TraesCS6B01G277700 chr3B 93.182 44 2 1 668 711 698423921 698423879 3.340000e-06 63.9
18 TraesCS6B01G277700 chr3B 89.583 48 4 1 659 705 693115195 693115242 4.320000e-05 60.2
19 TraesCS6B01G277700 chr7D 90.909 44 4 0 668 711 161403468 161403425 4.320000e-05 60.2
20 TraesCS6B01G277700 chr5D 88.235 51 4 2 668 717 61703016 61703065 4.320000e-05 60.2
21 TraesCS6B01G277700 chr5B 88.235 51 3 3 668 717 493127324 493127372 1.550000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G277700 chr6B 502483962 502487965 4003 True 7395 7395 100.000000 1 4004 1 chr6B.!!$R2 4003
1 TraesCS6B01G277700 chr6D 320224837 320228581 3744 False 5529 5529 93.395000 249 3992 1 chr6D.!!$F1 3743
2 TraesCS6B01G277700 chr6A 457679656 457686387 6731 False 1667 3897 94.452333 742 4004 3 chr6A.!!$F1 3262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.037232 GGCTACACACACCTCTGACC 60.037 60.0 0.0 0.0 0.0 4.02 F
202 203 0.105964 CGTCCACAGTTTCACTCCCA 59.894 55.0 0.0 0.0 0.0 4.37 F
243 244 0.179100 CGGACTAGGTGCCACTCATG 60.179 60.0 0.0 0.0 0.0 3.07 F
972 4166 0.395312 GAAAGACCGAAGACCCACCA 59.605 55.0 0.0 0.0 0.0 4.17 F
2341 5537 0.250295 TGGGTTTCTTCGGAGCACAG 60.250 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 4963 0.548031 GTGCATCCTCCAATCTCCCA 59.452 55.0 0.0 0.0 0.00 4.37 R
2122 5318 0.109532 TTCCATGTTTCTGTCCGCCA 59.890 50.0 0.0 0.0 0.00 5.69 R
2316 5512 2.810767 GCTCCGAAGAAACCCAAGAGTT 60.811 50.0 0.0 0.0 0.00 3.01 R
2454 5650 0.173935 CGTGCATACCGTACCCAGAA 59.826 55.0 0.0 0.0 0.00 3.02 R
3385 6923 1.692411 GTTGAGAAGCAAACAGGGGT 58.308 50.0 0.0 0.0 38.44 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.216178 TACGCAAACTCCTACCCGC 59.784 57.895 0.00 0.00 0.00 6.13
19 20 1.534336 TACGCAAACTCCTACCCGCA 61.534 55.000 0.00 0.00 0.00 5.69
20 21 2.388232 CGCAAACTCCTACCCGCAC 61.388 63.158 0.00 0.00 0.00 5.34
21 22 1.302192 GCAAACTCCTACCCGCACA 60.302 57.895 0.00 0.00 0.00 4.57
22 23 0.887387 GCAAACTCCTACCCGCACAA 60.887 55.000 0.00 0.00 0.00 3.33
23 24 1.821216 CAAACTCCTACCCGCACAAT 58.179 50.000 0.00 0.00 0.00 2.71
24 25 1.737793 CAAACTCCTACCCGCACAATC 59.262 52.381 0.00 0.00 0.00 2.67
25 26 0.252197 AACTCCTACCCGCACAATCC 59.748 55.000 0.00 0.00 0.00 3.01
26 27 0.617820 ACTCCTACCCGCACAATCCT 60.618 55.000 0.00 0.00 0.00 3.24
27 28 0.541863 CTCCTACCCGCACAATCCTT 59.458 55.000 0.00 0.00 0.00 3.36
28 29 1.760613 CTCCTACCCGCACAATCCTTA 59.239 52.381 0.00 0.00 0.00 2.69
29 30 2.368875 CTCCTACCCGCACAATCCTTAT 59.631 50.000 0.00 0.00 0.00 1.73
30 31 2.367567 TCCTACCCGCACAATCCTTATC 59.632 50.000 0.00 0.00 0.00 1.75
31 32 2.550208 CCTACCCGCACAATCCTTATCC 60.550 54.545 0.00 0.00 0.00 2.59
32 33 1.213296 ACCCGCACAATCCTTATCCT 58.787 50.000 0.00 0.00 0.00 3.24
33 34 1.141053 ACCCGCACAATCCTTATCCTC 59.859 52.381 0.00 0.00 0.00 3.71
34 35 1.417890 CCCGCACAATCCTTATCCTCT 59.582 52.381 0.00 0.00 0.00 3.69
35 36 2.158755 CCCGCACAATCCTTATCCTCTT 60.159 50.000 0.00 0.00 0.00 2.85
36 37 3.134458 CCGCACAATCCTTATCCTCTTC 58.866 50.000 0.00 0.00 0.00 2.87
37 38 3.432186 CCGCACAATCCTTATCCTCTTCA 60.432 47.826 0.00 0.00 0.00 3.02
38 39 3.557595 CGCACAATCCTTATCCTCTTCAC 59.442 47.826 0.00 0.00 0.00 3.18
39 40 4.517285 GCACAATCCTTATCCTCTTCACA 58.483 43.478 0.00 0.00 0.00 3.58
40 41 4.333926 GCACAATCCTTATCCTCTTCACAC 59.666 45.833 0.00 0.00 0.00 3.82
41 42 5.491070 CACAATCCTTATCCTCTTCACACA 58.509 41.667 0.00 0.00 0.00 3.72
42 43 6.118170 CACAATCCTTATCCTCTTCACACAT 58.882 40.000 0.00 0.00 0.00 3.21
43 44 6.259608 CACAATCCTTATCCTCTTCACACATC 59.740 42.308 0.00 0.00 0.00 3.06
44 45 5.559148 ATCCTTATCCTCTTCACACATCC 57.441 43.478 0.00 0.00 0.00 3.51
45 46 4.361783 TCCTTATCCTCTTCACACATCCA 58.638 43.478 0.00 0.00 0.00 3.41
46 47 4.162320 TCCTTATCCTCTTCACACATCCAC 59.838 45.833 0.00 0.00 0.00 4.02
47 48 4.163078 CCTTATCCTCTTCACACATCCACT 59.837 45.833 0.00 0.00 0.00 4.00
48 49 3.623906 ATCCTCTTCACACATCCACTG 57.376 47.619 0.00 0.00 0.00 3.66
49 50 1.625315 TCCTCTTCACACATCCACTGG 59.375 52.381 0.00 0.00 0.00 4.00
50 51 1.446907 CTCTTCACACATCCACTGGC 58.553 55.000 0.00 0.00 0.00 4.85
51 52 1.002888 CTCTTCACACATCCACTGGCT 59.997 52.381 0.00 0.00 0.00 4.75
52 53 2.234661 CTCTTCACACATCCACTGGCTA 59.765 50.000 0.00 0.00 0.00 3.93
53 54 2.028112 TCTTCACACATCCACTGGCTAC 60.028 50.000 0.00 0.00 0.00 3.58
54 55 1.347062 TCACACATCCACTGGCTACA 58.653 50.000 0.00 0.00 0.00 2.74
55 56 1.001974 TCACACATCCACTGGCTACAC 59.998 52.381 0.00 0.00 0.00 2.90
56 57 1.055849 ACACATCCACTGGCTACACA 58.944 50.000 0.00 0.00 0.00 3.72
57 58 1.270839 ACACATCCACTGGCTACACAC 60.271 52.381 0.00 0.00 0.00 3.82
58 59 1.055849 ACATCCACTGGCTACACACA 58.944 50.000 0.00 0.00 0.00 3.72
59 60 1.270839 ACATCCACTGGCTACACACAC 60.271 52.381 0.00 0.00 0.00 3.82
60 61 0.324943 ATCCACTGGCTACACACACC 59.675 55.000 0.00 0.00 0.00 4.16
61 62 0.762842 TCCACTGGCTACACACACCT 60.763 55.000 0.00 0.00 0.00 4.00
62 63 0.320771 CCACTGGCTACACACACCTC 60.321 60.000 0.00 0.00 0.00 3.85
63 64 0.681733 CACTGGCTACACACACCTCT 59.318 55.000 0.00 0.00 0.00 3.69
64 65 0.681733 ACTGGCTACACACACCTCTG 59.318 55.000 0.00 0.00 0.00 3.35
65 66 0.969149 CTGGCTACACACACCTCTGA 59.031 55.000 0.00 0.00 0.00 3.27
66 67 0.679505 TGGCTACACACACCTCTGAC 59.320 55.000 0.00 0.00 0.00 3.51
67 68 0.037232 GGCTACACACACCTCTGACC 60.037 60.000 0.00 0.00 0.00 4.02
68 69 0.679505 GCTACACACACCTCTGACCA 59.320 55.000 0.00 0.00 0.00 4.02
69 70 1.276421 GCTACACACACCTCTGACCAT 59.724 52.381 0.00 0.00 0.00 3.55
70 71 2.675317 GCTACACACACCTCTGACCATC 60.675 54.545 0.00 0.00 0.00 3.51
71 72 0.318441 ACACACACCTCTGACCATCG 59.682 55.000 0.00 0.00 0.00 3.84
72 73 0.318441 CACACACCTCTGACCATCGT 59.682 55.000 0.00 0.00 0.00 3.73
73 74 0.318441 ACACACCTCTGACCATCGTG 59.682 55.000 0.00 0.00 0.00 4.35
74 75 0.603065 CACACCTCTGACCATCGTGA 59.397 55.000 0.00 0.00 0.00 4.35
75 76 1.205655 CACACCTCTGACCATCGTGAT 59.794 52.381 0.00 0.00 0.00 3.06
76 77 1.205655 ACACCTCTGACCATCGTGATG 59.794 52.381 2.81 2.81 38.51 3.07
89 90 5.165911 CATCGTGATGGGAAAGAAATCTG 57.834 43.478 1.81 0.00 35.24 2.90
90 91 4.551702 TCGTGATGGGAAAGAAATCTGA 57.448 40.909 0.00 0.00 0.00 3.27
91 92 4.253685 TCGTGATGGGAAAGAAATCTGAC 58.746 43.478 0.00 0.00 0.00 3.51
92 93 3.062639 CGTGATGGGAAAGAAATCTGACG 59.937 47.826 0.00 0.00 0.00 4.35
93 94 3.009723 TGATGGGAAAGAAATCTGACGC 58.990 45.455 0.00 0.00 0.00 5.19
94 95 1.821216 TGGGAAAGAAATCTGACGCC 58.179 50.000 0.00 0.00 0.00 5.68
95 96 1.073125 TGGGAAAGAAATCTGACGCCA 59.927 47.619 0.00 0.00 0.00 5.69
96 97 2.159382 GGGAAAGAAATCTGACGCCAA 58.841 47.619 0.00 0.00 0.00 4.52
97 98 2.162408 GGGAAAGAAATCTGACGCCAAG 59.838 50.000 0.00 0.00 0.00 3.61
98 99 2.162408 GGAAAGAAATCTGACGCCAAGG 59.838 50.000 0.00 0.00 0.00 3.61
99 100 2.859165 AAGAAATCTGACGCCAAGGA 57.141 45.000 0.00 0.00 0.00 3.36
100 101 2.393271 AGAAATCTGACGCCAAGGAG 57.607 50.000 0.00 0.00 0.00 3.69
101 102 1.625818 AGAAATCTGACGCCAAGGAGT 59.374 47.619 0.00 0.00 0.00 3.85
102 103 1.734465 GAAATCTGACGCCAAGGAGTG 59.266 52.381 0.00 0.00 0.00 3.51
111 112 1.379044 CCAAGGAGTGGTCATGGGC 60.379 63.158 0.00 0.00 43.20 5.36
112 113 1.746615 CAAGGAGTGGTCATGGGCG 60.747 63.158 0.00 0.00 0.00 6.13
113 114 2.224159 AAGGAGTGGTCATGGGCGT 61.224 57.895 0.00 0.00 0.00 5.68
114 115 2.436646 GGAGTGGTCATGGGCGTG 60.437 66.667 0.00 0.00 0.00 5.34
115 116 2.347490 GAGTGGTCATGGGCGTGT 59.653 61.111 0.00 0.00 0.00 4.49
116 117 2.032528 AGTGGTCATGGGCGTGTG 59.967 61.111 0.00 0.00 0.00 3.82
117 118 2.031919 GTGGTCATGGGCGTGTGA 59.968 61.111 0.00 0.00 0.00 3.58
118 119 2.031919 TGGTCATGGGCGTGTGAC 59.968 61.111 6.91 6.91 43.02 3.67
119 120 2.347490 GGTCATGGGCGTGTGACT 59.653 61.111 12.94 0.00 43.23 3.41
120 121 1.741770 GGTCATGGGCGTGTGACTC 60.742 63.158 12.94 3.31 43.23 3.36
121 122 1.741770 GTCATGGGCGTGTGACTCC 60.742 63.158 7.89 0.00 41.10 3.85
122 123 2.436646 CATGGGCGTGTGACTCCC 60.437 66.667 0.00 0.00 40.47 4.30
123 124 4.082523 ATGGGCGTGTGACTCCCG 62.083 66.667 0.00 0.00 42.98 5.14
125 126 3.771160 GGGCGTGTGACTCCCGAT 61.771 66.667 0.00 0.00 0.00 4.18
126 127 2.202756 GGCGTGTGACTCCCGATC 60.203 66.667 0.00 0.00 0.00 3.69
127 128 2.202756 GCGTGTGACTCCCGATCC 60.203 66.667 0.00 0.00 0.00 3.36
128 129 2.102357 CGTGTGACTCCCGATCCG 59.898 66.667 0.00 0.00 0.00 4.18
138 139 3.303928 CCGATCCGGGGGTAGCTC 61.304 72.222 0.00 0.00 44.15 4.09
139 140 3.303928 CGATCCGGGGGTAGCTCC 61.304 72.222 0.00 0.00 0.00 4.70
140 141 3.303928 GATCCGGGGGTAGCTCCG 61.304 72.222 26.40 26.40 45.29 4.63
145 146 2.735237 GGGGGTAGCTCCGAATCG 59.265 66.667 0.00 0.00 37.00 3.34
146 147 1.831286 GGGGGTAGCTCCGAATCGA 60.831 63.158 3.36 0.00 37.00 3.59
147 148 1.660917 GGGGTAGCTCCGAATCGAG 59.339 63.158 3.36 0.80 37.00 4.04
148 149 1.108132 GGGGTAGCTCCGAATCGAGT 61.108 60.000 3.36 0.00 37.00 4.18
149 150 0.745468 GGGTAGCTCCGAATCGAGTT 59.255 55.000 3.36 0.55 37.00 3.01
150 151 1.536284 GGGTAGCTCCGAATCGAGTTG 60.536 57.143 3.36 0.00 37.00 3.16
151 152 1.536284 GGTAGCTCCGAATCGAGTTGG 60.536 57.143 13.13 13.13 32.11 3.77
152 153 1.134560 GTAGCTCCGAATCGAGTTGGT 59.865 52.381 18.32 2.63 32.11 3.67
153 154 0.108615 AGCTCCGAATCGAGTTGGTG 60.109 55.000 18.32 16.69 32.11 4.17
154 155 0.389948 GCTCCGAATCGAGTTGGTGT 60.390 55.000 18.32 0.00 32.11 4.16
155 156 1.939838 GCTCCGAATCGAGTTGGTGTT 60.940 52.381 18.32 0.00 32.11 3.32
156 157 1.726791 CTCCGAATCGAGTTGGTGTTG 59.273 52.381 18.32 4.78 0.00 3.33
157 158 0.796312 CCGAATCGAGTTGGTGTTGG 59.204 55.000 11.12 0.00 0.00 3.77
158 159 0.165944 CGAATCGAGTTGGTGTTGGC 59.834 55.000 0.00 0.00 0.00 4.52
159 160 1.234821 GAATCGAGTTGGTGTTGGCA 58.765 50.000 0.00 0.00 0.00 4.92
160 161 0.951558 AATCGAGTTGGTGTTGGCAC 59.048 50.000 0.00 0.00 44.53 5.01
169 170 3.957288 GTGTTGGCACCCATAGTCT 57.043 52.632 0.00 0.00 39.61 3.24
170 171 2.200373 GTGTTGGCACCCATAGTCTT 57.800 50.000 0.00 0.00 39.61 3.01
171 172 2.084546 GTGTTGGCACCCATAGTCTTC 58.915 52.381 0.00 0.00 39.61 2.87
172 173 1.338674 TGTTGGCACCCATAGTCTTCG 60.339 52.381 0.00 0.00 31.53 3.79
173 174 0.392461 TTGGCACCCATAGTCTTCGC 60.392 55.000 0.00 0.00 31.53 4.70
174 175 1.264749 TGGCACCCATAGTCTTCGCT 61.265 55.000 0.00 0.00 0.00 4.93
175 176 0.811616 GGCACCCATAGTCTTCGCTG 60.812 60.000 0.00 0.00 0.00 5.18
176 177 0.811616 GCACCCATAGTCTTCGCTGG 60.812 60.000 0.00 0.00 0.00 4.85
177 178 0.811616 CACCCATAGTCTTCGCTGGC 60.812 60.000 0.00 0.00 0.00 4.85
178 179 1.227674 CCCATAGTCTTCGCTGGCC 60.228 63.158 0.00 0.00 0.00 5.36
179 180 1.690219 CCCATAGTCTTCGCTGGCCT 61.690 60.000 3.32 0.00 0.00 5.19
180 181 0.179000 CCATAGTCTTCGCTGGCCTT 59.821 55.000 3.32 0.00 0.00 4.35
181 182 1.293924 CATAGTCTTCGCTGGCCTTG 58.706 55.000 3.32 0.00 0.00 3.61
182 183 0.905357 ATAGTCTTCGCTGGCCTTGT 59.095 50.000 3.32 0.00 0.00 3.16
183 184 0.246635 TAGTCTTCGCTGGCCTTGTC 59.753 55.000 3.32 0.00 0.00 3.18
184 185 2.048222 TCTTCGCTGGCCTTGTCG 60.048 61.111 3.32 1.98 0.00 4.35
185 186 2.357517 CTTCGCTGGCCTTGTCGT 60.358 61.111 3.32 0.00 0.00 4.34
186 187 2.357034 TTCGCTGGCCTTGTCGTC 60.357 61.111 3.32 0.00 0.00 4.20
187 188 3.876589 TTCGCTGGCCTTGTCGTCC 62.877 63.158 3.32 0.00 0.00 4.79
188 189 4.680237 CGCTGGCCTTGTCGTCCA 62.680 66.667 3.32 0.00 0.00 4.02
189 190 3.050275 GCTGGCCTTGTCGTCCAC 61.050 66.667 3.32 0.00 0.00 4.02
190 191 2.425592 CTGGCCTTGTCGTCCACA 59.574 61.111 3.32 0.00 0.00 4.17
191 192 1.669115 CTGGCCTTGTCGTCCACAG 60.669 63.158 3.32 0.00 35.97 3.66
192 193 2.383245 CTGGCCTTGTCGTCCACAGT 62.383 60.000 3.32 0.00 35.97 3.55
193 194 1.227853 GGCCTTGTCGTCCACAGTT 60.228 57.895 0.00 0.00 35.97 3.16
194 195 0.818040 GGCCTTGTCGTCCACAGTTT 60.818 55.000 0.00 0.00 35.97 2.66
195 196 0.586802 GCCTTGTCGTCCACAGTTTC 59.413 55.000 0.00 0.00 35.97 2.78
196 197 1.948104 CCTTGTCGTCCACAGTTTCA 58.052 50.000 0.00 0.00 35.97 2.69
197 198 1.597663 CCTTGTCGTCCACAGTTTCAC 59.402 52.381 0.00 0.00 35.97 3.18
198 199 2.550978 CTTGTCGTCCACAGTTTCACT 58.449 47.619 0.00 0.00 35.97 3.41
199 200 2.218953 TGTCGTCCACAGTTTCACTC 57.781 50.000 0.00 0.00 0.00 3.51
200 201 1.202486 TGTCGTCCACAGTTTCACTCC 60.202 52.381 0.00 0.00 0.00 3.85
201 202 0.391597 TCGTCCACAGTTTCACTCCC 59.608 55.000 0.00 0.00 0.00 4.30
202 203 0.105964 CGTCCACAGTTTCACTCCCA 59.894 55.000 0.00 0.00 0.00 4.37
203 204 1.873903 CGTCCACAGTTTCACTCCCAG 60.874 57.143 0.00 0.00 0.00 4.45
204 205 1.141053 GTCCACAGTTTCACTCCCAGT 59.859 52.381 0.00 0.00 0.00 4.00
205 206 1.843851 TCCACAGTTTCACTCCCAGTT 59.156 47.619 0.00 0.00 0.00 3.16
206 207 3.042682 TCCACAGTTTCACTCCCAGTTA 58.957 45.455 0.00 0.00 0.00 2.24
207 208 3.139077 CCACAGTTTCACTCCCAGTTAC 58.861 50.000 0.00 0.00 0.00 2.50
208 209 3.139077 CACAGTTTCACTCCCAGTTACC 58.861 50.000 0.00 0.00 0.00 2.85
209 210 2.775384 ACAGTTTCACTCCCAGTTACCA 59.225 45.455 0.00 0.00 0.00 3.25
210 211 3.394606 ACAGTTTCACTCCCAGTTACCAT 59.605 43.478 0.00 0.00 0.00 3.55
211 212 3.753272 CAGTTTCACTCCCAGTTACCATG 59.247 47.826 0.00 0.00 0.00 3.66
212 213 2.488153 GTTTCACTCCCAGTTACCATGC 59.512 50.000 0.00 0.00 0.00 4.06
213 214 0.249120 TCACTCCCAGTTACCATGCG 59.751 55.000 0.00 0.00 0.00 4.73
214 215 0.744414 CACTCCCAGTTACCATGCGG 60.744 60.000 0.00 0.00 38.77 5.69
215 216 1.153168 CTCCCAGTTACCATGCGGG 60.153 63.158 0.00 0.00 44.81 6.13
224 225 3.451894 CCATGCGGGTTCCCTTGC 61.452 66.667 6.31 3.79 0.00 4.01
225 226 3.814268 CATGCGGGTTCCCTTGCG 61.814 66.667 6.31 0.00 0.00 4.85
229 230 4.016706 CGGGTTCCCTTGCGGACT 62.017 66.667 6.31 0.00 41.83 3.85
230 231 2.652095 CGGGTTCCCTTGCGGACTA 61.652 63.158 6.31 0.00 41.83 2.59
231 232 1.221021 GGGTTCCCTTGCGGACTAG 59.779 63.158 0.00 0.00 41.83 2.57
232 233 1.221021 GGTTCCCTTGCGGACTAGG 59.779 63.158 0.00 0.00 41.83 3.02
233 234 1.551019 GGTTCCCTTGCGGACTAGGT 61.551 60.000 0.00 0.00 41.83 3.08
234 235 0.391263 GTTCCCTTGCGGACTAGGTG 60.391 60.000 0.00 0.00 41.83 4.00
235 236 2.125106 CCCTTGCGGACTAGGTGC 60.125 66.667 0.00 0.00 37.12 5.01
236 237 2.125106 CCTTGCGGACTAGGTGCC 60.125 66.667 0.00 0.00 34.45 5.01
237 238 2.662596 CTTGCGGACTAGGTGCCA 59.337 61.111 0.00 0.00 0.00 4.92
238 239 1.741770 CTTGCGGACTAGGTGCCAC 60.742 63.158 0.00 0.00 0.00 5.01
239 240 2.172483 CTTGCGGACTAGGTGCCACT 62.172 60.000 0.00 0.00 0.00 4.00
240 241 2.167398 TTGCGGACTAGGTGCCACTC 62.167 60.000 0.00 0.00 0.00 3.51
241 242 2.646175 GCGGACTAGGTGCCACTCA 61.646 63.158 0.00 0.00 0.00 3.41
242 243 1.961180 GCGGACTAGGTGCCACTCAT 61.961 60.000 0.00 0.00 0.00 2.90
243 244 0.179100 CGGACTAGGTGCCACTCATG 60.179 60.000 0.00 0.00 0.00 3.07
244 245 1.195115 GGACTAGGTGCCACTCATGA 58.805 55.000 0.00 0.00 0.00 3.07
245 246 1.555075 GGACTAGGTGCCACTCATGAA 59.445 52.381 0.00 0.00 0.00 2.57
246 247 2.419297 GGACTAGGTGCCACTCATGAAG 60.419 54.545 0.00 0.00 0.00 3.02
247 248 1.556911 ACTAGGTGCCACTCATGAAGG 59.443 52.381 9.06 9.06 0.00 3.46
257 258 2.568956 CACTCATGAAGGAGGAGGAACA 59.431 50.000 0.00 0.00 36.76 3.18
280 281 1.739466 TGTTTGATGAGGAGCAATCGC 59.261 47.619 0.00 0.00 38.99 4.58
287 288 1.965754 GAGGAGCAATCGCAGGAGGT 61.966 60.000 0.00 0.00 42.27 3.85
300 301 4.554036 GAGGTGGCCGCCCTCATC 62.554 72.222 32.01 18.78 46.46 2.92
340 344 1.001406 GACTTATGCGCTAGAGGCCAT 59.999 52.381 9.73 0.00 37.74 4.40
342 346 0.758734 TTATGCGCTAGAGGCCATGT 59.241 50.000 9.73 0.00 37.74 3.21
345 349 2.109799 CGCTAGAGGCCATGTGGG 59.890 66.667 5.01 0.00 37.74 4.61
366 370 1.617947 GGATCCTGCCTTCGGTGAGT 61.618 60.000 3.84 0.00 0.00 3.41
381 385 2.553685 GGTGAGTACCCGGTTTGGAATT 60.554 50.000 0.00 0.00 41.36 2.17
395 399 6.020201 CGGTTTGGAATTACAAAACACACTTC 60.020 38.462 26.80 9.23 45.87 3.01
433 437 2.709934 AGCATGGCTCTATGTTGATCCT 59.290 45.455 0.00 0.00 30.62 3.24
434 438 3.072944 GCATGGCTCTATGTTGATCCTC 58.927 50.000 0.00 0.00 0.00 3.71
444 448 7.225784 TCTATGTTGATCCTCTATGAGAAGC 57.774 40.000 0.00 0.00 0.00 3.86
455 459 2.244486 ATGAGAAGCAGGAGAGACCA 57.756 50.000 0.00 0.00 42.04 4.02
461 465 4.135153 CAGGAGAGACCACGCCCG 62.135 72.222 0.00 0.00 42.04 6.13
514 518 2.278013 GACGATGACGGCTCGGAC 60.278 66.667 13.41 4.97 45.04 4.79
515 519 4.175489 ACGATGACGGCTCGGACG 62.175 66.667 13.41 0.00 44.46 4.79
556 560 4.475135 GCCTTGGCCTCGGAGACC 62.475 72.222 14.16 4.73 0.00 3.85
561 565 2.043248 GGCCTCGGAGACCACCTA 60.043 66.667 6.58 0.00 0.00 3.08
568 572 0.686441 CGGAGACCACCTATCCACCA 60.686 60.000 0.00 0.00 32.31 4.17
572 576 2.694109 GAGACCACCTATCCACCACTAC 59.306 54.545 0.00 0.00 0.00 2.73
576 580 1.681793 CACCTATCCACCACTACGAGG 59.318 57.143 0.00 0.00 0.00 4.63
577 581 1.287146 ACCTATCCACCACTACGAGGT 59.713 52.381 0.00 0.00 40.85 3.85
584 588 0.825010 ACCACTACGAGGTCACCGTT 60.825 55.000 0.00 0.00 40.95 4.44
590 594 4.795278 CACTACGAGGTCACCGTTTAATAC 59.205 45.833 0.00 0.00 40.95 1.89
596 600 3.055602 AGGTCACCGTTTAATACCTCACC 60.056 47.826 0.00 0.00 35.67 4.02
597 601 3.306919 GGTCACCGTTTAATACCTCACCA 60.307 47.826 0.00 0.00 0.00 4.17
607 611 8.562052 CGTTTAATACCTCACCAAGTTTTAGTT 58.438 33.333 0.00 0.00 0.00 2.24
610 614 9.729281 TTAATACCTCACCAAGTTTTAGTTAGG 57.271 33.333 0.00 0.00 32.28 2.69
616 620 8.101419 CCTCACCAAGTTTTAGTTAGGATTAGT 58.899 37.037 0.00 0.00 28.10 2.24
672 682 8.418597 TGGTTATAATATACTCCCTCAGACAC 57.581 38.462 0.00 0.00 0.00 3.67
673 683 8.232412 TGGTTATAATATACTCCCTCAGACACT 58.768 37.037 0.00 0.00 0.00 3.55
674 684 9.091220 GGTTATAATATACTCCCTCAGACACTT 57.909 37.037 0.00 0.00 0.00 3.16
680 690 9.838339 AATATACTCCCTCAGACACTTATTTTG 57.162 33.333 0.00 0.00 0.00 2.44
681 691 4.911390 ACTCCCTCAGACACTTATTTTGG 58.089 43.478 0.00 0.00 0.00 3.28
682 692 4.263506 ACTCCCTCAGACACTTATTTTGGG 60.264 45.833 0.00 0.00 0.00 4.12
683 693 3.913799 TCCCTCAGACACTTATTTTGGGA 59.086 43.478 0.00 0.00 38.72 4.37
684 694 4.010349 CCCTCAGACACTTATTTTGGGAC 58.990 47.826 0.00 0.00 34.34 4.46
685 695 3.684788 CCTCAGACACTTATTTTGGGACG 59.315 47.826 0.00 0.00 0.00 4.79
686 696 3.670625 TCAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
687 697 3.325425 TCAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
688 698 3.684788 CAGACACTTATTTTGGGACGGAG 59.315 47.826 0.00 0.00 0.00 4.63
689 699 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
690 700 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
691 701 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
692 702 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
693 703 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
694 704 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
695 705 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
723 764 7.977789 ACTTTGTTTGAATTTTGTTTGTCCT 57.022 28.000 0.00 0.00 0.00 3.85
738 779 3.275617 TGTCCTTTTCATATGACCCGG 57.724 47.619 4.48 6.00 0.00 5.73
740 781 3.458118 TGTCCTTTTCATATGACCCGGAT 59.542 43.478 0.73 0.00 0.00 4.18
829 888 3.779444 TGCCCTAGAGGACTATGTATGG 58.221 50.000 0.00 0.00 38.24 2.74
851 911 3.068590 GGATTTAGACGTCGGGACCAATA 59.931 47.826 10.46 0.00 0.00 1.90
876 936 6.849588 AAACAAATTTGATGAGCCTTGTTC 57.150 33.333 24.64 0.00 36.31 3.18
882 942 2.826428 TGATGAGCCTTGTTCGATAGC 58.174 47.619 0.00 0.00 0.00 2.97
883 943 2.432146 TGATGAGCCTTGTTCGATAGCT 59.568 45.455 0.00 0.00 36.25 3.32
884 944 3.636764 TGATGAGCCTTGTTCGATAGCTA 59.363 43.478 0.00 0.00 32.97 3.32
943 4137 3.059597 CGGTTCAACTGAGTTGCAAGTAG 60.060 47.826 19.99 7.81 42.55 2.57
966 4160 4.120589 ACTCAAACAGAAAGACCGAAGAC 58.879 43.478 0.00 0.00 0.00 3.01
970 4164 1.070289 ACAGAAAGACCGAAGACCCAC 59.930 52.381 0.00 0.00 0.00 4.61
971 4165 0.685660 AGAAAGACCGAAGACCCACC 59.314 55.000 0.00 0.00 0.00 4.61
972 4166 0.395312 GAAAGACCGAAGACCCACCA 59.605 55.000 0.00 0.00 0.00 4.17
978 4172 1.227823 CGAAGACCCACCAAGCACA 60.228 57.895 0.00 0.00 0.00 4.57
1015 4210 3.497332 TCCTGAATGATACTCCTACCCG 58.503 50.000 0.00 0.00 0.00 5.28
1079 4274 2.768344 GATCCCCCTCGCTCCCAA 60.768 66.667 0.00 0.00 0.00 4.12
1167 4362 2.670592 TTCATGCTGCACTGCGCT 60.671 55.556 9.73 0.00 43.06 5.92
1402 4598 3.977244 TGCACTGTCGCTCGCTCA 61.977 61.111 0.00 0.00 0.00 4.26
1615 4811 3.253061 TTGGTGATGGTGCCGGGA 61.253 61.111 2.18 0.00 0.00 5.14
1695 4891 2.038814 TTGGAAGAGCTGTGCACCGA 62.039 55.000 15.69 0.00 0.00 4.69
1718 4914 0.884514 GTTGAGGAAAGAGGCTTGGC 59.115 55.000 0.00 0.00 0.00 4.52
1767 4963 6.000219 GCTGATTGATATGTATGGGAAGTGT 59.000 40.000 0.00 0.00 0.00 3.55
1785 4981 0.548031 GTGGGAGATTGGAGGATGCA 59.452 55.000 0.00 0.00 30.91 3.96
1913 5109 5.499313 TGGTTTTGATATGCTCATGACTGA 58.501 37.500 0.00 0.00 32.72 3.41
1977 5173 3.447040 GCTTGTTCCAGCTTGCCA 58.553 55.556 0.00 0.00 36.79 4.92
2073 5269 3.659786 TGCACTTATTGACACTTACGCT 58.340 40.909 0.00 0.00 0.00 5.07
2086 5282 3.793559 ACTTACGCTAAGTGCCATAAGG 58.206 45.455 8.87 0.00 46.58 2.69
2110 5306 6.166279 GTGAAGATGATGGAGTTGACACTTA 58.834 40.000 0.00 0.00 31.22 2.24
2122 5318 6.294731 GGAGTTGACACTTAAAAATGGCTCAT 60.295 38.462 0.00 0.00 31.22 2.90
2341 5537 0.250295 TGGGTTTCTTCGGAGCACAG 60.250 55.000 0.00 0.00 0.00 3.66
2454 5650 1.434513 TTGCCTGGACCACCATCCTT 61.435 55.000 0.00 0.00 45.87 3.36
2455 5651 1.384191 GCCTGGACCACCATCCTTT 59.616 57.895 0.00 0.00 45.87 3.11
2590 5786 0.471191 CCATGCAGGCTGGATAGACA 59.529 55.000 21.56 6.95 35.70 3.41
2620 5816 2.031314 CAGCTATTTGAGGACATGCGTG 59.969 50.000 3.82 3.82 0.00 5.34
2707 5903 1.413808 GGAGGATCAAGGAGGCCTACT 60.414 57.143 13.46 13.46 36.25 2.57
2709 5905 1.008938 AGGATCAAGGAGGCCTACTGT 59.991 52.381 21.39 8.03 31.13 3.55
2742 5938 1.141019 GCCATTCGAGCCGAGTACA 59.859 57.895 0.00 0.00 37.14 2.90
3039 6236 5.979517 TGCACTCGTGTCAGATATATCAAAG 59.020 40.000 15.08 4.75 0.00 2.77
3078 6275 4.885325 ACGACACCATAAAAAGGAAGTGTT 59.115 37.500 0.00 0.00 38.49 3.32
3107 6306 5.930135 AGAGTAAATACACACCATCCCATC 58.070 41.667 0.00 0.00 0.00 3.51
3136 6335 4.118410 TGTTTTGATGCTGCAACGATTTT 58.882 34.783 6.36 0.00 0.00 1.82
3335 6535 1.617018 GGCCTTCAAATCTTGCCCCC 61.617 60.000 0.00 0.00 36.07 5.40
3385 6923 3.003173 CCTCTTCCCCTCGCCACA 61.003 66.667 0.00 0.00 0.00 4.17
3455 6993 2.092753 AGCATCAACCATGGTGAGTAGG 60.093 50.000 20.60 7.22 41.89 3.18
3462 7000 0.552848 CATGGTGAGTAGGGCCCAAT 59.447 55.000 27.56 9.21 0.00 3.16
3835 7373 1.901591 AACACCTGCTTGGATCACAG 58.098 50.000 0.00 0.00 39.71 3.66
3924 7472 1.708341 ATGAAAGGCAGTTGCTGGTT 58.292 45.000 3.88 0.00 41.70 3.67
3994 7542 5.066246 TGCATGTTAGATCAATGCATTTCGA 59.934 36.000 9.83 5.50 42.46 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.216178 GCGGGTAGGAGTTTGCGTA 59.784 57.895 0.00 0.00 0.00 4.42
1 2 2.047560 GCGGGTAGGAGTTTGCGT 60.048 61.111 0.00 0.00 0.00 5.24
2 3 2.047655 TGCGGGTAGGAGTTTGCG 60.048 61.111 0.00 0.00 0.00 4.85
3 4 0.887387 TTGTGCGGGTAGGAGTTTGC 60.887 55.000 0.00 0.00 0.00 3.68
4 5 1.737793 GATTGTGCGGGTAGGAGTTTG 59.262 52.381 0.00 0.00 0.00 2.93
5 6 1.339727 GGATTGTGCGGGTAGGAGTTT 60.340 52.381 0.00 0.00 0.00 2.66
6 7 0.252197 GGATTGTGCGGGTAGGAGTT 59.748 55.000 0.00 0.00 0.00 3.01
7 8 0.617820 AGGATTGTGCGGGTAGGAGT 60.618 55.000 0.00 0.00 0.00 3.85
8 9 0.541863 AAGGATTGTGCGGGTAGGAG 59.458 55.000 0.00 0.00 0.00 3.69
9 10 1.868713 TAAGGATTGTGCGGGTAGGA 58.131 50.000 0.00 0.00 0.00 2.94
10 11 2.550208 GGATAAGGATTGTGCGGGTAGG 60.550 54.545 0.00 0.00 0.00 3.18
11 12 2.368875 AGGATAAGGATTGTGCGGGTAG 59.631 50.000 0.00 0.00 31.63 3.18
12 13 2.367567 GAGGATAAGGATTGTGCGGGTA 59.632 50.000 0.00 0.00 31.63 3.69
13 14 1.141053 GAGGATAAGGATTGTGCGGGT 59.859 52.381 0.00 0.00 31.63 5.28
14 15 1.417890 AGAGGATAAGGATTGTGCGGG 59.582 52.381 0.00 0.00 31.63 6.13
15 16 2.918712 AGAGGATAAGGATTGTGCGG 57.081 50.000 0.00 0.00 31.63 5.69
16 17 3.557595 GTGAAGAGGATAAGGATTGTGCG 59.442 47.826 0.00 0.00 31.63 5.34
17 18 4.333926 GTGTGAAGAGGATAAGGATTGTGC 59.666 45.833 0.00 0.00 0.00 4.57
18 19 5.491070 TGTGTGAAGAGGATAAGGATTGTG 58.509 41.667 0.00 0.00 0.00 3.33
19 20 5.762179 TGTGTGAAGAGGATAAGGATTGT 57.238 39.130 0.00 0.00 0.00 2.71
20 21 5.762218 GGATGTGTGAAGAGGATAAGGATTG 59.238 44.000 0.00 0.00 0.00 2.67
21 22 5.429762 TGGATGTGTGAAGAGGATAAGGATT 59.570 40.000 0.00 0.00 0.00 3.01
22 23 4.971282 TGGATGTGTGAAGAGGATAAGGAT 59.029 41.667 0.00 0.00 0.00 3.24
23 24 4.162320 GTGGATGTGTGAAGAGGATAAGGA 59.838 45.833 0.00 0.00 0.00 3.36
24 25 4.163078 AGTGGATGTGTGAAGAGGATAAGG 59.837 45.833 0.00 0.00 0.00 2.69
25 26 5.114780 CAGTGGATGTGTGAAGAGGATAAG 58.885 45.833 0.00 0.00 0.00 1.73
26 27 4.080919 CCAGTGGATGTGTGAAGAGGATAA 60.081 45.833 1.68 0.00 0.00 1.75
27 28 3.452264 CCAGTGGATGTGTGAAGAGGATA 59.548 47.826 1.68 0.00 0.00 2.59
28 29 2.238144 CCAGTGGATGTGTGAAGAGGAT 59.762 50.000 1.68 0.00 0.00 3.24
29 30 1.625315 CCAGTGGATGTGTGAAGAGGA 59.375 52.381 1.68 0.00 0.00 3.71
30 31 1.947678 GCCAGTGGATGTGTGAAGAGG 60.948 57.143 15.20 0.00 0.00 3.69
31 32 1.002888 AGCCAGTGGATGTGTGAAGAG 59.997 52.381 15.20 0.00 0.00 2.85
32 33 1.059098 AGCCAGTGGATGTGTGAAGA 58.941 50.000 15.20 0.00 0.00 2.87
33 34 2.289631 TGTAGCCAGTGGATGTGTGAAG 60.290 50.000 15.20 0.00 0.00 3.02
34 35 1.696884 TGTAGCCAGTGGATGTGTGAA 59.303 47.619 15.20 0.00 0.00 3.18
35 36 1.001974 GTGTAGCCAGTGGATGTGTGA 59.998 52.381 15.20 0.00 0.00 3.58
36 37 1.270785 TGTGTAGCCAGTGGATGTGTG 60.271 52.381 15.20 0.00 0.00 3.82
37 38 1.055849 TGTGTAGCCAGTGGATGTGT 58.944 50.000 15.20 0.00 0.00 3.72
38 39 1.270785 TGTGTGTAGCCAGTGGATGTG 60.271 52.381 15.20 0.00 0.00 3.21
39 40 1.055849 TGTGTGTAGCCAGTGGATGT 58.944 50.000 15.20 0.00 0.00 3.06
40 41 1.442769 GTGTGTGTAGCCAGTGGATG 58.557 55.000 15.20 0.00 0.00 3.51
41 42 0.324943 GGTGTGTGTAGCCAGTGGAT 59.675 55.000 15.20 10.00 0.00 3.41
42 43 0.762842 AGGTGTGTGTAGCCAGTGGA 60.763 55.000 15.20 0.00 0.00 4.02
43 44 0.320771 GAGGTGTGTGTAGCCAGTGG 60.321 60.000 4.20 4.20 0.00 4.00
44 45 0.681733 AGAGGTGTGTGTAGCCAGTG 59.318 55.000 0.00 0.00 0.00 3.66
45 46 0.681733 CAGAGGTGTGTGTAGCCAGT 59.318 55.000 0.00 0.00 0.00 4.00
46 47 0.969149 TCAGAGGTGTGTGTAGCCAG 59.031 55.000 0.00 0.00 0.00 4.85
47 48 0.679505 GTCAGAGGTGTGTGTAGCCA 59.320 55.000 0.00 0.00 0.00 4.75
48 49 0.037232 GGTCAGAGGTGTGTGTAGCC 60.037 60.000 0.00 0.00 0.00 3.93
49 50 0.679505 TGGTCAGAGGTGTGTGTAGC 59.320 55.000 0.00 0.00 0.00 3.58
50 51 2.416027 CGATGGTCAGAGGTGTGTGTAG 60.416 54.545 0.00 0.00 0.00 2.74
51 52 1.544246 CGATGGTCAGAGGTGTGTGTA 59.456 52.381 0.00 0.00 0.00 2.90
52 53 0.318441 CGATGGTCAGAGGTGTGTGT 59.682 55.000 0.00 0.00 0.00 3.72
53 54 0.318441 ACGATGGTCAGAGGTGTGTG 59.682 55.000 0.00 0.00 0.00 3.82
54 55 0.318441 CACGATGGTCAGAGGTGTGT 59.682 55.000 0.00 0.00 0.00 3.72
55 56 0.603065 TCACGATGGTCAGAGGTGTG 59.397 55.000 0.00 0.00 0.00 3.82
56 57 1.205655 CATCACGATGGTCAGAGGTGT 59.794 52.381 0.00 0.00 35.24 4.16
57 58 1.931906 CATCACGATGGTCAGAGGTG 58.068 55.000 0.00 0.00 35.24 4.00
67 68 4.877823 TCAGATTTCTTTCCCATCACGATG 59.122 41.667 0.00 0.00 38.51 3.84
68 69 4.878397 GTCAGATTTCTTTCCCATCACGAT 59.122 41.667 0.00 0.00 0.00 3.73
69 70 4.253685 GTCAGATTTCTTTCCCATCACGA 58.746 43.478 0.00 0.00 0.00 4.35
70 71 3.062639 CGTCAGATTTCTTTCCCATCACG 59.937 47.826 0.00 0.00 0.00 4.35
71 72 3.181506 GCGTCAGATTTCTTTCCCATCAC 60.182 47.826 0.00 0.00 0.00 3.06
72 73 3.009723 GCGTCAGATTTCTTTCCCATCA 58.990 45.455 0.00 0.00 0.00 3.07
73 74 2.356069 GGCGTCAGATTTCTTTCCCATC 59.644 50.000 0.00 0.00 0.00 3.51
74 75 2.290896 TGGCGTCAGATTTCTTTCCCAT 60.291 45.455 0.00 0.00 0.00 4.00
75 76 1.073125 TGGCGTCAGATTTCTTTCCCA 59.927 47.619 0.00 0.00 0.00 4.37
76 77 1.821216 TGGCGTCAGATTTCTTTCCC 58.179 50.000 0.00 0.00 0.00 3.97
77 78 2.162408 CCTTGGCGTCAGATTTCTTTCC 59.838 50.000 0.00 0.00 0.00 3.13
78 79 3.074412 TCCTTGGCGTCAGATTTCTTTC 58.926 45.455 0.00 0.00 0.00 2.62
79 80 3.077359 CTCCTTGGCGTCAGATTTCTTT 58.923 45.455 0.00 0.00 0.00 2.52
80 81 2.039084 ACTCCTTGGCGTCAGATTTCTT 59.961 45.455 0.00 0.00 0.00 2.52
81 82 1.625818 ACTCCTTGGCGTCAGATTTCT 59.374 47.619 0.00 0.00 0.00 2.52
82 83 1.734465 CACTCCTTGGCGTCAGATTTC 59.266 52.381 0.00 0.00 0.00 2.17
83 84 1.611673 CCACTCCTTGGCGTCAGATTT 60.612 52.381 0.00 0.00 39.07 2.17
84 85 0.036010 CCACTCCTTGGCGTCAGATT 60.036 55.000 0.00 0.00 39.07 2.40
85 86 1.599047 CCACTCCTTGGCGTCAGAT 59.401 57.895 0.00 0.00 39.07 2.90
86 87 3.059982 CCACTCCTTGGCGTCAGA 58.940 61.111 0.00 0.00 39.07 3.27
94 95 1.746615 CGCCCATGACCACTCCTTG 60.747 63.158 0.00 0.00 0.00 3.61
95 96 2.224159 ACGCCCATGACCACTCCTT 61.224 57.895 0.00 0.00 0.00 3.36
96 97 2.607750 ACGCCCATGACCACTCCT 60.608 61.111 0.00 0.00 0.00 3.69
97 98 2.436646 CACGCCCATGACCACTCC 60.437 66.667 0.00 0.00 0.00 3.85
98 99 2.034879 CACACGCCCATGACCACTC 61.035 63.158 0.00 0.00 0.00 3.51
99 100 2.032528 CACACGCCCATGACCACT 59.967 61.111 0.00 0.00 0.00 4.00
100 101 2.031919 TCACACGCCCATGACCAC 59.968 61.111 0.00 0.00 0.00 4.16
101 102 2.031919 GTCACACGCCCATGACCA 59.968 61.111 0.00 0.00 39.49 4.02
102 103 1.741770 GAGTCACACGCCCATGACC 60.742 63.158 0.00 0.00 45.28 4.02
103 104 1.741770 GGAGTCACACGCCCATGAC 60.742 63.158 0.00 0.00 44.64 3.06
104 105 2.662596 GGAGTCACACGCCCATGA 59.337 61.111 0.00 0.00 31.36 3.07
109 110 2.202756 GATCGGGAGTCACACGCC 60.203 66.667 0.00 0.00 45.95 5.68
110 111 2.202756 GGATCGGGAGTCACACGC 60.203 66.667 0.00 0.00 45.95 5.34
112 113 2.494918 CCGGATCGGGAGTCACAC 59.505 66.667 13.96 0.00 44.15 3.82
122 123 3.303928 GGAGCTACCCCCGGATCG 61.304 72.222 0.73 0.00 0.00 3.69
123 124 3.303928 CGGAGCTACCCCCGGATC 61.304 72.222 0.73 0.00 41.89 3.36
124 125 2.674672 ATTCGGAGCTACCCCCGGAT 62.675 60.000 0.73 5.68 45.36 4.18
125 126 3.384555 ATTCGGAGCTACCCCCGGA 62.385 63.158 0.73 3.35 45.36 5.14
126 127 2.842936 ATTCGGAGCTACCCCCGG 60.843 66.667 11.27 0.00 45.36 5.73
127 128 2.735237 GATTCGGAGCTACCCCCG 59.265 66.667 5.25 5.25 46.57 5.73
128 129 1.807495 CTCGATTCGGAGCTACCCCC 61.807 65.000 6.18 0.00 34.64 5.40
129 130 1.108132 ACTCGATTCGGAGCTACCCC 61.108 60.000 6.18 0.00 37.57 4.95
130 131 0.745468 AACTCGATTCGGAGCTACCC 59.255 55.000 6.18 0.00 37.57 3.69
131 132 1.536284 CCAACTCGATTCGGAGCTACC 60.536 57.143 6.18 0.00 37.57 3.18
132 133 1.134560 ACCAACTCGATTCGGAGCTAC 59.865 52.381 6.18 0.00 37.57 3.58
133 134 1.134367 CACCAACTCGATTCGGAGCTA 59.866 52.381 6.18 0.00 37.57 3.32
134 135 0.108615 CACCAACTCGATTCGGAGCT 60.109 55.000 6.18 0.00 37.57 4.09
135 136 0.389948 ACACCAACTCGATTCGGAGC 60.390 55.000 6.18 0.00 37.57 4.70
136 137 1.726791 CAACACCAACTCGATTCGGAG 59.273 52.381 6.18 5.25 39.97 4.63
137 138 1.606994 CCAACACCAACTCGATTCGGA 60.607 52.381 6.18 0.00 0.00 4.55
138 139 0.796312 CCAACACCAACTCGATTCGG 59.204 55.000 6.18 0.00 0.00 4.30
139 140 0.165944 GCCAACACCAACTCGATTCG 59.834 55.000 0.00 0.00 0.00 3.34
140 141 1.069227 GTGCCAACACCAACTCGATTC 60.069 52.381 0.00 0.00 41.21 2.52
141 142 0.951558 GTGCCAACACCAACTCGATT 59.048 50.000 0.00 0.00 41.21 3.34
142 143 2.629002 GTGCCAACACCAACTCGAT 58.371 52.632 0.00 0.00 41.21 3.59
143 144 4.134623 GTGCCAACACCAACTCGA 57.865 55.556 0.00 0.00 41.21 4.04
151 152 2.084546 GAAGACTATGGGTGCCAACAC 58.915 52.381 0.00 0.00 46.66 3.32
152 153 1.338674 CGAAGACTATGGGTGCCAACA 60.339 52.381 0.00 0.00 36.95 3.33
153 154 1.369625 CGAAGACTATGGGTGCCAAC 58.630 55.000 0.00 0.00 36.95 3.77
154 155 0.392461 GCGAAGACTATGGGTGCCAA 60.392 55.000 0.00 0.00 36.95 4.52
155 156 1.220749 GCGAAGACTATGGGTGCCA 59.779 57.895 0.00 0.00 38.19 4.92
156 157 0.811616 CAGCGAAGACTATGGGTGCC 60.812 60.000 0.00 0.00 0.00 5.01
157 158 0.811616 CCAGCGAAGACTATGGGTGC 60.812 60.000 0.00 0.00 0.00 5.01
158 159 0.811616 GCCAGCGAAGACTATGGGTG 60.812 60.000 0.00 0.00 33.23 4.61
159 160 1.522569 GCCAGCGAAGACTATGGGT 59.477 57.895 0.00 0.00 33.23 4.51
160 161 1.227674 GGCCAGCGAAGACTATGGG 60.228 63.158 0.00 0.00 33.23 4.00
161 162 0.179000 AAGGCCAGCGAAGACTATGG 59.821 55.000 5.01 0.00 35.84 2.74
162 163 1.293924 CAAGGCCAGCGAAGACTATG 58.706 55.000 5.01 0.00 0.00 2.23
163 164 0.905357 ACAAGGCCAGCGAAGACTAT 59.095 50.000 5.01 0.00 0.00 2.12
164 165 0.246635 GACAAGGCCAGCGAAGACTA 59.753 55.000 5.01 0.00 0.00 2.59
165 166 1.004440 GACAAGGCCAGCGAAGACT 60.004 57.895 5.01 0.00 0.00 3.24
166 167 2.383527 CGACAAGGCCAGCGAAGAC 61.384 63.158 5.01 0.00 0.00 3.01
167 168 2.048222 CGACAAGGCCAGCGAAGA 60.048 61.111 5.01 0.00 0.00 2.87
168 169 2.357517 ACGACAAGGCCAGCGAAG 60.358 61.111 5.01 0.00 0.00 3.79
169 170 2.357034 GACGACAAGGCCAGCGAA 60.357 61.111 5.01 0.00 0.00 4.70
176 177 0.586802 GAAACTGTGGACGACAAGGC 59.413 55.000 0.00 0.00 32.80 4.35
177 178 1.597663 GTGAAACTGTGGACGACAAGG 59.402 52.381 0.00 0.00 32.80 3.61
186 187 6.502974 TGGTAACTGGGAGTGAAACTGTGG 62.503 50.000 0.00 0.00 44.49 4.17
187 188 3.433031 TGGTAACTGGGAGTGAAACTGTG 60.433 47.826 0.00 0.00 44.49 3.66
188 189 2.775384 TGGTAACTGGGAGTGAAACTGT 59.225 45.455 0.00 0.00 44.49 3.55
189 190 3.485463 TGGTAACTGGGAGTGAAACTG 57.515 47.619 0.00 0.00 44.49 3.16
191 192 2.488153 GCATGGTAACTGGGAGTGAAAC 59.512 50.000 0.00 0.00 37.61 2.78
192 193 2.790433 GCATGGTAACTGGGAGTGAAA 58.210 47.619 0.00 0.00 37.61 2.69
193 194 1.338674 CGCATGGTAACTGGGAGTGAA 60.339 52.381 0.00 0.00 37.61 3.18
194 195 0.249120 CGCATGGTAACTGGGAGTGA 59.751 55.000 0.00 0.00 37.61 3.41
195 196 0.744414 CCGCATGGTAACTGGGAGTG 60.744 60.000 0.00 0.00 37.61 3.51
196 197 1.602237 CCGCATGGTAACTGGGAGT 59.398 57.895 0.00 0.00 37.61 3.85
197 198 1.153168 CCCGCATGGTAACTGGGAG 60.153 63.158 0.00 0.00 42.77 4.30
198 199 2.994699 CCCGCATGGTAACTGGGA 59.005 61.111 0.00 0.00 42.77 4.37
220 221 1.741770 GTGGCACCTAGTCCGCAAG 60.742 63.158 6.29 0.00 33.28 4.01
221 222 2.167398 GAGTGGCACCTAGTCCGCAA 62.167 60.000 15.27 0.00 35.41 4.85
222 223 2.603473 AGTGGCACCTAGTCCGCA 60.603 61.111 15.27 0.00 35.41 5.69
223 224 1.961180 ATGAGTGGCACCTAGTCCGC 61.961 60.000 15.27 0.00 0.00 5.54
224 225 0.179100 CATGAGTGGCACCTAGTCCG 60.179 60.000 15.27 0.00 0.00 4.79
225 226 1.195115 TCATGAGTGGCACCTAGTCC 58.805 55.000 15.27 0.00 0.00 3.85
226 227 2.419297 CCTTCATGAGTGGCACCTAGTC 60.419 54.545 15.27 5.80 0.00 2.59
227 228 1.556911 CCTTCATGAGTGGCACCTAGT 59.443 52.381 15.27 0.00 0.00 2.57
228 229 1.833630 TCCTTCATGAGTGGCACCTAG 59.166 52.381 15.27 2.18 0.00 3.02
229 230 1.833630 CTCCTTCATGAGTGGCACCTA 59.166 52.381 15.27 3.67 0.00 3.08
230 231 0.617413 CTCCTTCATGAGTGGCACCT 59.383 55.000 15.27 1.14 0.00 4.00
231 232 0.393537 CCTCCTTCATGAGTGGCACC 60.394 60.000 15.27 6.59 0.00 5.01
232 233 0.615331 TCCTCCTTCATGAGTGGCAC 59.385 55.000 10.29 10.29 0.00 5.01
233 234 0.907486 CTCCTCCTTCATGAGTGGCA 59.093 55.000 10.83 0.00 0.00 4.92
234 235 0.179936 CCTCCTCCTTCATGAGTGGC 59.820 60.000 10.83 0.00 0.00 5.01
235 236 1.871418 TCCTCCTCCTTCATGAGTGG 58.129 55.000 9.73 9.73 0.00 4.00
236 237 2.568956 TGTTCCTCCTCCTTCATGAGTG 59.431 50.000 0.00 0.00 0.00 3.51
237 238 2.836981 CTGTTCCTCCTCCTTCATGAGT 59.163 50.000 0.00 0.00 0.00 3.41
238 239 3.102972 TCTGTTCCTCCTCCTTCATGAG 58.897 50.000 0.00 0.00 0.00 2.90
239 240 3.190383 TCTGTTCCTCCTCCTTCATGA 57.810 47.619 0.00 0.00 0.00 3.07
240 241 3.199508 ACATCTGTTCCTCCTCCTTCATG 59.800 47.826 0.00 0.00 0.00 3.07
241 242 3.458831 ACATCTGTTCCTCCTCCTTCAT 58.541 45.455 0.00 0.00 0.00 2.57
242 243 2.907892 ACATCTGTTCCTCCTCCTTCA 58.092 47.619 0.00 0.00 0.00 3.02
243 244 3.990959 AACATCTGTTCCTCCTCCTTC 57.009 47.619 0.00 0.00 31.64 3.46
244 245 3.652869 TCAAACATCTGTTCCTCCTCCTT 59.347 43.478 0.00 0.00 37.25 3.36
245 246 3.251484 TCAAACATCTGTTCCTCCTCCT 58.749 45.455 0.00 0.00 37.25 3.69
246 247 3.703001 TCAAACATCTGTTCCTCCTCC 57.297 47.619 0.00 0.00 37.25 4.30
247 248 4.836825 TCATCAAACATCTGTTCCTCCTC 58.163 43.478 0.00 0.00 37.25 3.71
257 258 3.875727 CGATTGCTCCTCATCAAACATCT 59.124 43.478 0.00 0.00 0.00 2.90
300 301 3.765257 ATCCTCCTCCTCCCAGGCG 62.765 68.421 0.00 0.00 34.61 5.52
340 344 1.229951 AAGGCAGGATCCTCCCACA 60.230 57.895 24.35 0.00 37.19 4.17
342 346 2.066393 CGAAGGCAGGATCCTCCCA 61.066 63.158 24.35 0.00 37.19 4.37
361 365 2.484742 ATTCCAAACCGGGTACTCAC 57.515 50.000 6.32 0.00 34.36 3.51
366 370 4.891756 TGTTTTGTAATTCCAAACCGGGTA 59.108 37.500 6.32 0.00 34.23 3.69
395 399 4.261867 CCATGCTGGATATTCCACACAATG 60.262 45.833 0.00 0.00 42.67 2.82
412 416 2.709934 AGGATCAACATAGAGCCATGCT 59.290 45.455 0.83 0.00 46.36 3.79
413 417 3.072944 GAGGATCAACATAGAGCCATGC 58.927 50.000 0.83 0.00 46.36 4.06
433 437 3.053320 TGGTCTCTCCTGCTTCTCATAGA 60.053 47.826 0.00 0.00 37.07 1.98
434 438 3.068024 GTGGTCTCTCCTGCTTCTCATAG 59.932 52.174 0.00 0.00 37.07 2.23
444 448 4.135153 CGGGCGTGGTCTCTCCTG 62.135 72.222 0.00 0.00 37.07 3.86
455 459 1.447838 CTATGAGTTGTGCGGGCGT 60.448 57.895 0.00 0.00 0.00 5.68
461 465 0.804989 GTGGCCACTATGAGTTGTGC 59.195 55.000 29.12 0.00 33.26 4.57
517 521 2.327002 CTTCATCACCATTGCCGCCG 62.327 60.000 0.00 0.00 0.00 6.46
556 560 1.681793 CCTCGTAGTGGTGGATAGGTG 59.318 57.143 0.00 0.00 36.26 4.00
568 572 4.142381 GGTATTAAACGGTGACCTCGTAGT 60.142 45.833 0.00 0.00 40.18 2.73
572 576 3.442100 GAGGTATTAAACGGTGACCTCG 58.558 50.000 0.00 0.00 44.92 4.63
576 580 3.929094 TGGTGAGGTATTAAACGGTGAC 58.071 45.455 0.00 0.00 0.00 3.67
577 581 4.040706 ACTTGGTGAGGTATTAAACGGTGA 59.959 41.667 0.00 0.00 0.00 4.02
584 588 9.729281 CCTAACTAAAACTTGGTGAGGTATTAA 57.271 33.333 0.00 0.00 37.84 1.40
590 594 8.101419 ACTAATCCTAACTAAAACTTGGTGAGG 58.899 37.037 0.77 0.77 42.63 3.86
646 656 9.036980 GTGTCTGAGGGAGTATATTATAACCAT 57.963 37.037 0.00 3.95 0.00 3.55
661 671 3.913799 TCCCAAAATAAGTGTCTGAGGGA 59.086 43.478 0.00 0.00 40.31 4.20
662 672 4.010349 GTCCCAAAATAAGTGTCTGAGGG 58.990 47.826 0.00 0.00 35.09 4.30
663 673 3.684788 CGTCCCAAAATAAGTGTCTGAGG 59.315 47.826 0.00 0.00 0.00 3.86
664 674 3.684788 CCGTCCCAAAATAAGTGTCTGAG 59.315 47.826 0.00 0.00 0.00 3.35
665 675 3.325425 TCCGTCCCAAAATAAGTGTCTGA 59.675 43.478 0.00 0.00 0.00 3.27
666 676 3.670625 TCCGTCCCAAAATAAGTGTCTG 58.329 45.455 0.00 0.00 0.00 3.51
667 677 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
668 678 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
669 679 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
670 680 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
671 681 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
672 682 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
673 683 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
674 684 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
675 685 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
676 686 1.835531 GATACTCCCTCCGTCCCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
677 687 1.273381 TGATACTCCCTCCGTCCCAAA 60.273 52.381 0.00 0.00 0.00 3.28
678 688 0.337082 TGATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
679 689 0.337082 TTGATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
680 690 1.138464 GTTTGATACTCCCTCCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
681 691 2.108970 AGTTTGATACTCCCTCCGTCC 58.891 52.381 0.00 0.00 28.23 4.79
682 692 3.889520 AAGTTTGATACTCCCTCCGTC 57.110 47.619 0.00 0.00 35.54 4.79
683 693 3.326880 ACAAAGTTTGATACTCCCTCCGT 59.673 43.478 22.23 0.00 35.54 4.69
684 694 3.939066 ACAAAGTTTGATACTCCCTCCG 58.061 45.455 22.23 0.00 35.54 4.63
685 695 5.768164 TCAAACAAAGTTTGATACTCCCTCC 59.232 40.000 22.23 0.00 35.54 4.30
686 696 6.877611 TCAAACAAAGTTTGATACTCCCTC 57.122 37.500 22.23 0.00 35.54 4.30
687 697 7.839680 ATTCAAACAAAGTTTGATACTCCCT 57.160 32.000 22.23 0.00 38.12 4.20
688 698 8.887036 AAATTCAAACAAAGTTTGATACTCCC 57.113 30.769 22.23 0.00 38.12 4.30
695 705 9.657121 GACAAACAAAATTCAAACAAAGTTTGA 57.343 25.926 22.23 18.33 43.33 2.69
717 727 3.264706 TCCGGGTCATATGAAAAGGACAA 59.735 43.478 7.07 0.00 32.00 3.18
718 728 2.841266 TCCGGGTCATATGAAAAGGACA 59.159 45.455 7.07 0.00 32.00 4.02
723 764 6.264292 CACCAAATATCCGGGTCATATGAAAA 59.736 38.462 7.07 0.00 31.03 2.29
734 775 3.492102 ATCAGTCACCAAATATCCGGG 57.508 47.619 0.00 0.00 0.00 5.73
738 779 6.293081 CGTCATCCAATCAGTCACCAAATATC 60.293 42.308 0.00 0.00 0.00 1.63
740 781 4.875536 CGTCATCCAATCAGTCACCAAATA 59.124 41.667 0.00 0.00 0.00 1.40
829 888 0.819582 TGGTCCCGACGTCTAAATCC 59.180 55.000 14.70 9.86 0.00 3.01
851 911 5.673514 ACAAGGCTCATCAAATTTGTTTGT 58.326 33.333 17.47 13.27 33.82 2.83
876 936 4.916249 GGTCCGAACACTTTATAGCTATCG 59.084 45.833 10.16 5.82 0.00 2.92
882 942 6.737254 AACATTGGTCCGAACACTTTATAG 57.263 37.500 0.00 0.00 0.00 1.31
883 943 7.879160 AGTAAACATTGGTCCGAACACTTTATA 59.121 33.333 0.00 0.00 0.00 0.98
884 944 6.713450 AGTAAACATTGGTCCGAACACTTTAT 59.287 34.615 0.00 0.00 0.00 1.40
926 4113 4.371786 TGAGTCTACTTGCAACTCAGTTG 58.628 43.478 13.67 13.67 43.25 3.16
936 4123 5.050023 GGTCTTTCTGTTTGAGTCTACTTGC 60.050 44.000 0.00 0.00 0.00 4.01
943 4137 4.209495 GTCTTCGGTCTTTCTGTTTGAGTC 59.791 45.833 0.00 0.00 0.00 3.36
978 4172 4.070552 GAACAGAGAGGGCGGCGT 62.071 66.667 9.37 2.92 0.00 5.68
1040 4235 1.645710 GTTCTTGGAGTGGAGGAGGA 58.354 55.000 0.00 0.00 0.00 3.71
1487 4683 1.794151 CTGCATCGCACCAAACACCA 61.794 55.000 0.00 0.00 33.79 4.17
1615 4811 1.000385 CACAATTGTGGCACGGTCAAT 60.000 47.619 27.60 4.15 42.10 2.57
1695 4891 3.160269 CAAGCCTCTTTCCTCAACCAAT 58.840 45.455 0.00 0.00 0.00 3.16
1718 4914 1.148157 CTTCACCGCTGCATAGTCCG 61.148 60.000 0.00 0.00 0.00 4.79
1767 4963 0.548031 GTGCATCCTCCAATCTCCCA 59.452 55.000 0.00 0.00 0.00 4.37
1785 4981 1.982395 TCCATCGAAGACCCTGCGT 60.982 57.895 0.00 0.00 42.51 5.24
1977 5173 1.452651 CTTGGCACGCCTCCATGAT 60.453 57.895 9.92 0.00 36.94 2.45
2073 5269 5.692115 TCATCTTCACCTTATGGCACTTA 57.308 39.130 0.00 0.00 36.63 2.24
2086 5282 4.573900 AGTGTCAACTCCATCATCTTCAC 58.426 43.478 0.00 0.00 26.77 3.18
2110 5306 0.532115 GTCCGCCATGAGCCATTTTT 59.468 50.000 0.00 0.00 38.78 1.94
2122 5318 0.109532 TTCCATGTTTCTGTCCGCCA 59.890 50.000 0.00 0.00 0.00 5.69
2316 5512 2.810767 GCTCCGAAGAAACCCAAGAGTT 60.811 50.000 0.00 0.00 0.00 3.01
2341 5537 2.599082 CGACTAAACCAGTTCTGATCGC 59.401 50.000 1.00 0.00 37.72 4.58
2454 5650 0.173935 CGTGCATACCGTACCCAGAA 59.826 55.000 0.00 0.00 0.00 3.02
2455 5651 1.669049 CCGTGCATACCGTACCCAGA 61.669 60.000 0.00 0.00 0.00 3.86
2590 5786 3.010584 TCCTCAAATAGCTGAAGGCCTTT 59.989 43.478 21.54 5.98 43.05 3.11
2620 5816 2.491152 CACCACGCCATGAATGCC 59.509 61.111 0.00 0.00 0.00 4.40
2707 5903 5.467735 CGAATGGCATATCTTTGATGAGACA 59.532 40.000 0.00 0.00 0.00 3.41
2709 5905 5.857268 TCGAATGGCATATCTTTGATGAGA 58.143 37.500 0.00 0.00 0.00 3.27
2742 5938 1.374947 CAGAACACCCCACACCGAT 59.625 57.895 0.00 0.00 0.00 4.18
3056 6253 5.432885 AACACTTCCTTTTTATGGTGTCG 57.567 39.130 0.00 0.00 36.99 4.35
3078 6275 9.016438 GGGATGGTGTGTATTTACTCTTAAAAA 57.984 33.333 0.00 0.00 30.86 1.94
3107 6306 2.557924 TGCAGCATCAAAACAAGGGTAG 59.442 45.455 0.00 0.00 0.00 3.18
3136 6335 0.787084 AGACAGACCCTCCCTCAGAA 59.213 55.000 0.00 0.00 0.00 3.02
3385 6923 1.692411 GTTGAGAAGCAAACAGGGGT 58.308 50.000 0.00 0.00 38.44 4.95
3455 6993 3.091545 TGTGAAAGAATGAGATTGGGCC 58.908 45.455 0.00 0.00 0.00 5.80
3583 7121 2.575532 TCCTGGAACTTGAGTTTGCAG 58.424 47.619 0.00 3.60 38.56 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.