Multiple sequence alignment - TraesCS6B01G277400
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6B01G277400
chr6B
100.000
4172
0
0
1
4172
501770019
501774190
0.000000e+00
7705.0
1
TraesCS6B01G277400
chr6B
89.143
175
18
1
3768
3942
487136353
487136180
2.530000e-52
217.0
2
TraesCS6B01G277400
chr6B
88.028
142
16
1
4012
4152
487136187
487136046
2.580000e-37
167.0
3
TraesCS6B01G277400
chr6B
93.976
83
3
1
3940
4020
135505596
135505678
1.570000e-24
124.0
4
TraesCS6B01G277400
chr6D
95.808
3626
70
19
577
4172
321776898
321773325
0.000000e+00
5779.0
5
TraesCS6B01G277400
chr6D
89.340
197
13
3
169
363
321777526
321777336
1.500000e-59
241.0
6
TraesCS6B01G277400
chr6D
88.050
159
7
5
374
525
321777294
321777141
1.190000e-40
178.0
7
TraesCS6B01G277400
chr6D
94.545
55
3
0
1
55
321777683
321777629
7.430000e-13
86.1
8
TraesCS6B01G277400
chr6A
95.185
3302
93
34
602
3877
459077453
459074192
0.000000e+00
5156.0
9
TraesCS6B01G277400
chr6A
88.557
201
11
6
169
363
459082038
459081844
2.510000e-57
233.0
10
TraesCS6B01G277400
chr6A
88.166
169
7
5
418
576
459077991
459077826
5.510000e-44
189.0
11
TraesCS6B01G277400
chr4B
88.571
175
19
1
3768
3942
471307836
471308009
1.180000e-50
211.0
12
TraesCS6B01G277400
chr7A
88.506
174
19
1
3769
3942
230300984
230301156
4.230000e-50
209.0
13
TraesCS6B01G277400
chr7A
88.068
176
20
1
3767
3942
204737055
204736881
1.520000e-49
207.0
14
TraesCS6B01G277400
chr5D
88.068
176
19
2
3767
3942
201311966
201312139
1.520000e-49
207.0
15
TraesCS6B01G277400
chr3B
88.000
175
20
1
3768
3942
254193186
254193013
5.470000e-49
206.0
16
TraesCS6B01G277400
chr5A
87.500
176
21
1
3767
3942
210535384
210535558
7.070000e-48
202.0
17
TraesCS6B01G277400
chr5A
87.857
140
16
1
4012
4150
178032247
178032386
3.340000e-36
163.0
18
TraesCS6B01G277400
chr5A
87.857
140
15
2
4012
4150
500045323
500045185
3.340000e-36
163.0
19
TraesCS6B01G277400
chr5A
85.806
155
19
3
4012
4163
444536783
444536937
1.200000e-35
161.0
20
TraesCS6B01G277400
chr1A
88.571
140
15
1
4012
4150
293712532
293712671
7.170000e-38
169.0
21
TraesCS6B01G277400
chr1A
95.556
45
1
1
2070
2114
569372540
569372497
2.080000e-08
71.3
22
TraesCS6B01G277400
chr2A
87.413
143
17
1
4012
4153
203459807
203459949
3.340000e-36
163.0
23
TraesCS6B01G277400
chr1D
87.857
140
16
1
4012
4150
226449897
226450036
3.340000e-36
163.0
24
TraesCS6B01G277400
chr1D
87.413
143
17
1
4012
4153
461273178
461273320
3.340000e-36
163.0
25
TraesCS6B01G277400
chr1D
91.111
90
6
1
3939
4026
3368845
3368756
2.040000e-23
121.0
26
TraesCS6B01G277400
chr4A
95.238
84
3
1
3938
4021
724795787
724795869
9.410000e-27
132.0
27
TraesCS6B01G277400
chr7D
92.473
93
4
2
3941
4030
29876456
29876364
3.380000e-26
130.0
28
TraesCS6B01G277400
chr7D
92.941
85
4
1
3938
4020
311882043
311882127
5.660000e-24
122.0
29
TraesCS6B01G277400
chr7B
93.182
88
5
1
3941
4027
84186515
84186602
1.220000e-25
128.0
30
TraesCS6B01G277400
chr3D
92.941
85
4
1
3941
4025
169888215
169888133
5.660000e-24
122.0
31
TraesCS6B01G277400
chr3D
92.045
88
3
4
3939
4024
169888138
169888223
2.040000e-23
121.0
32
TraesCS6B01G277400
chr2D
83.036
112
11
3
3941
4045
14625957
14626067
1.230000e-15
95.3
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6B01G277400
chr6B
501770019
501774190
4171
False
7705.000000
7705
100.00000
1
4172
1
chr6B.!!$F2
4171
1
TraesCS6B01G277400
chr6D
321773325
321777683
4358
True
1571.025000
5779
91.93575
1
4172
4
chr6D.!!$R1
4171
2
TraesCS6B01G277400
chr6A
459074192
459082038
7846
True
1859.333333
5156
90.63600
169
3877
3
chr6A.!!$R1
3708
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
538
4378
0.106519
AGGAGGCAGAGAGAGAGAGC
60.107
60.0
0.0
0.0
0.0
4.09
F
1794
6023
0.182299
CCTTCTTCATGCCCCTCTCC
59.818
60.0
0.0
0.0
0.0
3.71
F
1938
6167
0.254178
CCCTGCTACATGGCTCACTT
59.746
55.0
0.0
0.0
0.0
3.16
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1798
6027
0.179100
CGCTGGTTGTGATCGGAGAT
60.179
55.0
0.0
0.0
45.12
2.75
R
2916
7145
0.664166
CAGCAAACACATTCCGCCAC
60.664
55.0
0.0
0.0
0.00
5.01
R
3905
8143
5.241728
GGTTTCTAGCATCCACTCAAACTTT
59.758
40.0
0.0
0.0
0.00
2.66
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
53
54
3.072184
AGAGCAGCCGAAAAGGATATGAT
59.928
43.478
0.00
0.00
45.00
2.45
54
55
4.284490
AGAGCAGCCGAAAAGGATATGATA
59.716
41.667
0.00
0.00
45.00
2.15
55
56
4.319177
AGCAGCCGAAAAGGATATGATAC
58.681
43.478
0.00
0.00
45.00
2.24
56
57
4.040952
AGCAGCCGAAAAGGATATGATACT
59.959
41.667
0.00
0.00
45.00
2.12
57
58
4.153117
GCAGCCGAAAAGGATATGATACTG
59.847
45.833
0.00
0.00
45.00
2.74
58
59
4.692625
CAGCCGAAAAGGATATGATACTGG
59.307
45.833
0.00
0.00
45.00
4.00
59
60
4.593206
AGCCGAAAAGGATATGATACTGGA
59.407
41.667
0.00
0.00
45.00
3.86
60
61
4.932200
GCCGAAAAGGATATGATACTGGAG
59.068
45.833
0.00
0.00
45.00
3.86
61
62
4.932200
CCGAAAAGGATATGATACTGGAGC
59.068
45.833
0.00
0.00
45.00
4.70
62
63
5.511373
CCGAAAAGGATATGATACTGGAGCA
60.511
44.000
0.00
0.00
45.00
4.26
63
64
5.636965
CGAAAAGGATATGATACTGGAGCAG
59.363
44.000
0.00
0.00
37.52
4.24
91
92
5.232463
AGCTGTGTTTAAAATGGCAAGATG
58.768
37.500
0.00
0.00
0.00
2.90
92
93
4.143052
GCTGTGTTTAAAATGGCAAGATGC
60.143
41.667
0.00
0.00
44.08
3.91
93
94
5.212532
TGTGTTTAAAATGGCAAGATGCT
57.787
34.783
2.00
0.00
44.28
3.79
94
95
6.338214
TGTGTTTAAAATGGCAAGATGCTA
57.662
33.333
2.00
0.00
44.28
3.49
95
96
6.389091
TGTGTTTAAAATGGCAAGATGCTAG
58.611
36.000
2.00
0.00
44.28
3.42
96
97
6.015519
TGTGTTTAAAATGGCAAGATGCTAGT
60.016
34.615
2.00
0.00
44.28
2.57
97
98
7.175816
TGTGTTTAAAATGGCAAGATGCTAGTA
59.824
33.333
2.00
0.00
44.28
1.82
98
99
7.698130
GTGTTTAAAATGGCAAGATGCTAGTAG
59.302
37.037
2.00
0.00
44.28
2.57
99
100
7.393234
TGTTTAAAATGGCAAGATGCTAGTAGT
59.607
33.333
2.00
0.00
44.28
2.73
100
101
8.889717
GTTTAAAATGGCAAGATGCTAGTAGTA
58.110
33.333
2.00
0.00
44.28
1.82
101
102
8.662781
TTAAAATGGCAAGATGCTAGTAGTAG
57.337
34.615
0.00
0.00
44.28
2.57
117
118
8.160521
CTAGTAGTAGCATGATGAGTACAAGT
57.839
38.462
0.00
0.00
0.00
3.16
118
119
7.033530
AGTAGTAGCATGATGAGTACAAGTC
57.966
40.000
0.00
0.00
0.00
3.01
119
120
6.831353
AGTAGTAGCATGATGAGTACAAGTCT
59.169
38.462
0.00
0.00
0.00
3.24
120
121
5.900425
AGTAGCATGATGAGTACAAGTCTG
58.100
41.667
0.00
0.00
0.00
3.51
159
160
4.142902
TGTTATTTTTCAGCTCAGCTACGC
60.143
41.667
0.00
0.00
36.40
4.42
160
161
2.169832
TTTTTCAGCTCAGCTACGCT
57.830
45.000
0.00
3.27
36.40
5.07
161
162
2.169832
TTTTCAGCTCAGCTACGCTT
57.830
45.000
0.00
0.00
36.40
4.68
162
163
2.169832
TTTCAGCTCAGCTACGCTTT
57.830
45.000
0.00
0.00
36.40
3.51
163
164
2.169832
TTCAGCTCAGCTACGCTTTT
57.830
45.000
0.00
0.00
36.40
2.27
164
165
3.313012
TTCAGCTCAGCTACGCTTTTA
57.687
42.857
0.00
0.00
36.40
1.52
166
167
3.861840
TCAGCTCAGCTACGCTTTTAAT
58.138
40.909
0.00
0.00
36.40
1.40
167
168
3.618594
TCAGCTCAGCTACGCTTTTAATG
59.381
43.478
0.00
0.00
36.40
1.90
189
215
6.861065
TGTAAGGCTCCGATTTTAATGATC
57.139
37.500
0.00
0.00
0.00
2.92
199
229
2.071778
TTTAATGATCTGCCTGCCCC
57.928
50.000
0.00
0.00
0.00
5.80
204
234
3.011517
ATCTGCCTGCCCCTCGTT
61.012
61.111
0.00
0.00
0.00
3.85
205
235
3.335356
ATCTGCCTGCCCCTCGTTG
62.335
63.158
0.00
0.00
0.00
4.10
222
252
2.926200
CGTTGCCACAATCTCAGTCTAG
59.074
50.000
0.00
0.00
0.00
2.43
233
263
2.309162
TCTCAGTCTAGGGCAGTACTGT
59.691
50.000
23.44
7.20
40.18
3.55
236
266
2.164624
CAGTCTAGGGCAGTACTGTCAC
59.835
54.545
27.67
18.52
36.81
3.67
237
267
2.041891
AGTCTAGGGCAGTACTGTCACT
59.958
50.000
27.67
23.73
36.81
3.41
334
366
0.535102
ACAGCCGTCAAAGTCCCAAG
60.535
55.000
0.00
0.00
0.00
3.61
356
388
3.560068
GGATTTCTCGCGGTCAATACAAT
59.440
43.478
6.13
0.00
0.00
2.71
363
395
2.132762
GCGGTCAATACAATACCTCCG
58.867
52.381
0.00
0.00
39.71
4.63
364
396
2.223876
GCGGTCAATACAATACCTCCGA
60.224
50.000
0.00
0.00
39.17
4.55
367
399
3.067180
GGTCAATACAATACCTCCGACGA
59.933
47.826
0.00
0.00
0.00
4.20
369
401
3.949754
TCAATACAATACCTCCGACGACT
59.050
43.478
0.00
0.00
0.00
4.18
370
402
5.008019
GTCAATACAATACCTCCGACGACTA
59.992
44.000
0.00
0.00
0.00
2.59
371
403
5.237996
TCAATACAATACCTCCGACGACTAG
59.762
44.000
0.00
0.00
0.00
2.57
372
404
2.996631
ACAATACCTCCGACGACTAGT
58.003
47.619
0.00
0.00
0.00
2.57
381
451
3.068574
GACGACTAGTCTCGGCTCT
57.931
57.895
20.34
0.00
46.13
4.09
405
475
8.103305
TCTCTGCAATAATTTTGGTCTCTACTT
58.897
33.333
0.00
0.00
0.00
2.24
407
477
7.336931
TCTGCAATAATTTTGGTCTCTACTTCC
59.663
37.037
0.00
0.00
0.00
3.46
408
478
6.377146
TGCAATAATTTTGGTCTCTACTTCCC
59.623
38.462
0.00
0.00
0.00
3.97
409
479
6.458342
GCAATAATTTTGGTCTCTACTTCCCG
60.458
42.308
0.00
0.00
0.00
5.14
410
480
2.467566
TTTTGGTCTCTACTTCCCGC
57.532
50.000
0.00
0.00
0.00
6.13
411
481
0.245539
TTTGGTCTCTACTTCCCGCG
59.754
55.000
0.00
0.00
0.00
6.46
412
482
0.896940
TTGGTCTCTACTTCCCGCGT
60.897
55.000
4.92
0.00
0.00
6.01
433
4263
2.771089
ACTTGCATACAGTCCACACAG
58.229
47.619
0.00
0.00
0.00
3.66
442
4272
6.072728
GCATACAGTCCACACAGACAAATAAA
60.073
38.462
0.00
0.00
39.34
1.40
538
4378
0.106519
AGGAGGCAGAGAGAGAGAGC
60.107
60.000
0.00
0.00
0.00
4.09
566
4406
1.610624
GCAGACTGAAAACGATGGGGA
60.611
52.381
6.65
0.00
0.00
4.81
634
4821
2.825836
GCACGCATCCAGGGAAGG
60.826
66.667
0.00
0.00
0.00
3.46
635
4822
2.989639
CACGCATCCAGGGAAGGA
59.010
61.111
0.00
0.00
43.01
3.36
636
4823
1.153289
CACGCATCCAGGGAAGGAG
60.153
63.158
0.00
0.00
41.90
3.69
657
4846
5.246203
GGAGATAGCAGTAGAGAGAGAGAGA
59.754
48.000
0.00
0.00
0.00
3.10
659
4848
6.077993
AGATAGCAGTAGAGAGAGAGAGAGA
58.922
44.000
0.00
0.00
0.00
3.10
660
4849
4.679373
AGCAGTAGAGAGAGAGAGAGAG
57.321
50.000
0.00
0.00
0.00
3.20
661
4850
4.290093
AGCAGTAGAGAGAGAGAGAGAGA
58.710
47.826
0.00
0.00
0.00
3.10
703
4892
0.326595
ACAGCGAGGACAGAGAGAGA
59.673
55.000
0.00
0.00
0.00
3.10
704
4893
1.016627
CAGCGAGGACAGAGAGAGAG
58.983
60.000
0.00
0.00
0.00
3.20
705
4894
0.748005
AGCGAGGACAGAGAGAGAGC
60.748
60.000
0.00
0.00
0.00
4.09
706
4895
2.013807
CGAGGACAGAGAGAGAGCG
58.986
63.158
0.00
0.00
0.00
5.03
707
4896
0.461163
CGAGGACAGAGAGAGAGCGA
60.461
60.000
0.00
0.00
0.00
4.93
708
4897
1.299541
GAGGACAGAGAGAGAGCGAG
58.700
60.000
0.00
0.00
0.00
5.03
709
4898
0.748005
AGGACAGAGAGAGAGCGAGC
60.748
60.000
0.00
0.00
0.00
5.03
710
4899
1.351707
GACAGAGAGAGAGCGAGCG
59.648
63.158
0.00
0.00
0.00
5.03
711
4900
1.078778
ACAGAGAGAGAGCGAGCGA
60.079
57.895
0.00
0.00
0.00
4.93
712
4901
1.089481
ACAGAGAGAGAGCGAGCGAG
61.089
60.000
0.00
0.00
0.00
5.03
713
4902
2.180204
AGAGAGAGAGCGAGCGAGC
61.180
63.158
0.00
0.00
37.41
5.03
714
4903
2.437537
AGAGAGAGCGAGCGAGCA
60.438
61.111
9.01
0.00
40.15
4.26
715
4904
2.024588
GAGAGAGCGAGCGAGCAG
59.975
66.667
9.01
0.00
40.15
4.24
742
4931
3.309296
GGGAGAGAGAGAGAGAGAGAGA
58.691
54.545
0.00
0.00
0.00
3.10
747
4936
3.312890
AGAGAGAGAGAGAGAGAGGAGG
58.687
54.545
0.00
0.00
0.00
4.30
839
5030
3.387050
CCTCCCTGTACCCTGTTGTATAC
59.613
52.174
0.00
0.00
0.00
1.47
840
5031
4.287552
CTCCCTGTACCCTGTTGTATACT
58.712
47.826
4.17
0.00
0.00
2.12
841
5032
4.284178
TCCCTGTACCCTGTTGTATACTC
58.716
47.826
4.17
0.00
0.00
2.59
842
5033
4.016851
TCCCTGTACCCTGTTGTATACTCT
60.017
45.833
4.17
0.00
0.00
3.24
843
5034
4.341520
CCCTGTACCCTGTTGTATACTCTC
59.658
50.000
4.17
0.00
0.00
3.20
844
5035
5.202004
CCTGTACCCTGTTGTATACTCTCT
58.798
45.833
4.17
0.00
0.00
3.10
845
5036
5.299782
CCTGTACCCTGTTGTATACTCTCTC
59.700
48.000
4.17
0.00
0.00
3.20
846
5037
6.075949
TGTACCCTGTTGTATACTCTCTCT
57.924
41.667
4.17
0.00
0.00
3.10
847
5038
6.120905
TGTACCCTGTTGTATACTCTCTCTC
58.879
44.000
4.17
0.00
0.00
3.20
848
5039
5.459982
ACCCTGTTGTATACTCTCTCTCT
57.540
43.478
4.17
0.00
0.00
3.10
887
5079
1.381327
CCAGGTAGGAAGCGAGGGA
60.381
63.158
0.00
0.00
41.22
4.20
888
5080
1.395826
CCAGGTAGGAAGCGAGGGAG
61.396
65.000
0.00
0.00
41.22
4.30
889
5081
1.075896
AGGTAGGAAGCGAGGGAGG
60.076
63.158
0.00
0.00
0.00
4.30
890
5082
2.134933
GGTAGGAAGCGAGGGAGGG
61.135
68.421
0.00
0.00
0.00
4.30
1341
5558
4.193893
TGGGATGCCATGCTCGGG
62.194
66.667
0.00
0.00
0.00
5.14
1470
5687
2.507102
CCGCTCGTCGACAATGCT
60.507
61.111
17.16
0.00
41.67
3.79
1713
5930
1.001641
CACAAAGCCCCCTCTCCTG
60.002
63.158
0.00
0.00
0.00
3.86
1743
5960
1.885871
GCATGGCCTCTTCAACCAC
59.114
57.895
3.32
0.00
35.99
4.16
1750
5967
1.348036
GCCTCTTCAACCACTACCAGT
59.652
52.381
0.00
0.00
0.00
4.00
1792
6021
0.918310
AGCCTTCTTCATGCCCCTCT
60.918
55.000
0.00
0.00
0.00
3.69
1794
6023
0.182299
CCTTCTTCATGCCCCTCTCC
59.818
60.000
0.00
0.00
0.00
3.71
1798
6027
0.984961
CTTCATGCCCCTCTCCTCCA
60.985
60.000
0.00
0.00
0.00
3.86
1881
6110
0.727970
CAGACGACCTCTACCTCACG
59.272
60.000
0.00
0.00
0.00
4.35
1938
6167
0.254178
CCCTGCTACATGGCTCACTT
59.746
55.000
0.00
0.00
0.00
3.16
2262
6491
1.258676
ACAAGTCCTTCTCCGACCTC
58.741
55.000
0.00
0.00
0.00
3.85
2622
6851
1.075542
CTGGCGACGAAATTGTAGCA
58.924
50.000
0.00
0.00
41.55
3.49
2664
6893
4.735132
GCTCGTGCACCACCGCTA
62.735
66.667
12.15
0.00
39.41
4.26
2742
6971
0.757512
ATGGAGCTGATCGTGCTGAT
59.242
50.000
16.20
6.74
41.30
2.90
2883
7112
1.134367
CCAAGAGTCGAAGATGCGGTA
59.866
52.381
0.00
0.00
40.67
4.02
3630
7864
6.299805
TGCCTAGATGTTTAGAGACAACAT
57.700
37.500
0.00
0.00
45.60
2.71
3644
7878
9.587772
TTAGAGACAACATAGCAGAATCTTTAC
57.412
33.333
0.00
0.00
0.00
2.01
3759
7997
6.159988
GTCTATATGATGACCTGTACTTGCC
58.840
44.000
0.00
0.00
0.00
4.52
3852
8090
5.532557
TGTCATGCTCATCTAAATCCTACG
58.467
41.667
0.00
0.00
0.00
3.51
3932
8170
2.237143
TGAGTGGATGCTAGAAACCCTG
59.763
50.000
0.00
0.00
0.00
4.45
3968
8206
5.634020
CCCTCCGTAAAGAAATATAAGAGCG
59.366
44.000
0.00
0.00
0.00
5.03
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
5
6
3.830744
TTCGAGGAAACTTGTCTTGGA
57.169
42.857
0.00
0.00
44.43
3.53
7
8
4.035675
AGCTTTTCGAGGAAACTTGTCTTG
59.964
41.667
0.00
0.00
44.43
3.02
45
46
7.069331
AGCTATTACTGCTCCAGTATCATATCC
59.931
40.741
5.97
0.00
44.85
2.59
53
54
4.023980
ACACAGCTATTACTGCTCCAGTA
58.976
43.478
1.18
1.18
43.46
2.74
55
56
3.533606
ACACAGCTATTACTGCTCCAG
57.466
47.619
0.00
0.00
41.60
3.86
56
57
3.981071
AACACAGCTATTACTGCTCCA
57.019
42.857
0.00
0.00
41.60
3.86
57
58
6.737254
TTTAAACACAGCTATTACTGCTCC
57.263
37.500
0.00
0.00
41.60
4.70
58
59
7.698130
CCATTTTAAACACAGCTATTACTGCTC
59.302
37.037
0.00
0.00
41.60
4.26
59
60
7.538575
CCATTTTAAACACAGCTATTACTGCT
58.461
34.615
0.00
0.00
41.60
4.24
60
61
6.253512
GCCATTTTAAACACAGCTATTACTGC
59.746
38.462
0.00
0.00
41.60
4.40
61
62
7.312154
TGCCATTTTAAACACAGCTATTACTG
58.688
34.615
0.00
0.00
43.59
2.74
62
63
7.461182
TGCCATTTTAAACACAGCTATTACT
57.539
32.000
0.00
0.00
0.00
2.24
63
64
8.026607
TCTTGCCATTTTAAACACAGCTATTAC
58.973
33.333
0.00
0.00
0.00
1.89
66
67
6.588719
TCTTGCCATTTTAAACACAGCTAT
57.411
33.333
0.00
0.00
0.00
2.97
72
73
6.389906
ACTAGCATCTTGCCATTTTAAACAC
58.610
36.000
0.00
0.00
46.52
3.32
91
92
6.561737
TGTACTCATCATGCTACTACTAGC
57.438
41.667
0.00
0.00
45.19
3.42
92
93
8.160521
ACTTGTACTCATCATGCTACTACTAG
57.839
38.462
0.00
0.00
0.00
2.57
93
94
7.993758
AGACTTGTACTCATCATGCTACTACTA
59.006
37.037
0.00
0.00
0.00
1.82
94
95
6.831353
AGACTTGTACTCATCATGCTACTACT
59.169
38.462
0.00
0.00
0.00
2.57
95
96
6.915300
CAGACTTGTACTCATCATGCTACTAC
59.085
42.308
0.00
0.00
0.00
2.73
96
97
6.603599
ACAGACTTGTACTCATCATGCTACTA
59.396
38.462
0.00
0.00
35.25
1.82
97
98
5.420421
ACAGACTTGTACTCATCATGCTACT
59.580
40.000
0.00
0.00
35.25
2.57
98
99
5.655488
ACAGACTTGTACTCATCATGCTAC
58.345
41.667
0.00
0.00
35.25
3.58
99
100
5.921962
ACAGACTTGTACTCATCATGCTA
57.078
39.130
0.00
0.00
35.25
3.49
100
101
4.815533
ACAGACTTGTACTCATCATGCT
57.184
40.909
0.00
0.00
35.25
3.79
101
102
6.968131
TTTACAGACTTGTACTCATCATGC
57.032
37.500
0.00
0.00
39.44
4.06
133
134
7.684670
CGTAGCTGAGCTGAAAAATAACAATA
58.315
34.615
18.79
0.00
40.10
1.90
160
161
9.796120
CATTAAAATCGGAGCCTTACATTAAAA
57.204
29.630
0.00
0.00
0.00
1.52
161
162
9.179909
TCATTAAAATCGGAGCCTTACATTAAA
57.820
29.630
0.00
0.00
0.00
1.52
162
163
8.740123
TCATTAAAATCGGAGCCTTACATTAA
57.260
30.769
0.00
0.00
0.00
1.40
163
164
8.918202
ATCATTAAAATCGGAGCCTTACATTA
57.082
30.769
0.00
0.00
0.00
1.90
164
165
7.721399
AGATCATTAAAATCGGAGCCTTACATT
59.279
33.333
0.00
0.00
0.00
2.71
166
167
6.483307
CAGATCATTAAAATCGGAGCCTTACA
59.517
38.462
0.00
0.00
0.00
2.41
167
168
6.566753
GCAGATCATTAAAATCGGAGCCTTAC
60.567
42.308
0.00
0.00
0.00
2.34
199
229
1.728971
GACTGAGATTGTGGCAACGAG
59.271
52.381
0.00
0.00
42.51
4.18
204
234
1.833630
CCCTAGACTGAGATTGTGGCA
59.166
52.381
0.00
0.00
0.00
4.92
205
235
1.474143
GCCCTAGACTGAGATTGTGGC
60.474
57.143
0.00
0.00
0.00
5.01
206
236
1.833630
TGCCCTAGACTGAGATTGTGG
59.166
52.381
0.00
0.00
0.00
4.17
222
252
1.376037
GCCAGTGACAGTACTGCCC
60.376
63.158
22.90
14.88
45.21
5.36
233
263
0.534873
TAATGCTACAGCGCCAGTGA
59.465
50.000
2.29
0.00
45.83
3.41
236
266
0.527600
TCGTAATGCTACAGCGCCAG
60.528
55.000
2.29
0.00
45.83
4.85
237
267
0.804544
GTCGTAATGCTACAGCGCCA
60.805
55.000
2.29
0.00
45.83
5.69
238
268
0.804544
TGTCGTAATGCTACAGCGCC
60.805
55.000
2.29
0.00
45.83
6.53
302
332
2.724174
GACGGCTGTTTTGTTATGTTGC
59.276
45.455
0.00
0.00
0.00
4.17
334
366
2.546778
TGTATTGACCGCGAGAAATCC
58.453
47.619
8.23
0.00
0.00
3.01
363
395
0.932399
GAGAGCCGAGACTAGTCGTC
59.068
60.000
17.07
13.26
43.17
4.20
364
396
0.538118
AGAGAGCCGAGACTAGTCGT
59.462
55.000
17.07
5.93
38.32
4.34
367
399
0.034960
TGCAGAGAGCCGAGACTAGT
60.035
55.000
0.00
0.00
44.83
2.57
369
401
1.769026
ATTGCAGAGAGCCGAGACTA
58.231
50.000
0.00
0.00
44.83
2.59
370
402
1.769026
TATTGCAGAGAGCCGAGACT
58.231
50.000
0.00
0.00
44.83
3.24
371
403
2.586258
TTATTGCAGAGAGCCGAGAC
57.414
50.000
0.00
0.00
44.83
3.36
372
404
3.827008
AATTATTGCAGAGAGCCGAGA
57.173
42.857
0.00
0.00
44.83
4.04
376
446
4.400567
AGACCAAAATTATTGCAGAGAGCC
59.599
41.667
0.00
0.00
44.83
4.70
381
451
7.336931
GGAAGTAGAGACCAAAATTATTGCAGA
59.663
37.037
0.00
0.00
0.00
4.26
405
475
0.179121
CTGTATGCAAGTACGCGGGA
60.179
55.000
12.47
0.00
33.35
5.14
407
477
0.921347
GACTGTATGCAAGTACGCGG
59.079
55.000
12.47
0.00
33.35
6.46
408
478
0.921347
GGACTGTATGCAAGTACGCG
59.079
55.000
3.53
3.53
33.35
6.01
409
479
1.659098
GTGGACTGTATGCAAGTACGC
59.341
52.381
0.00
0.00
0.00
4.42
410
480
2.666508
GTGTGGACTGTATGCAAGTACG
59.333
50.000
0.00
0.00
0.00
3.67
411
481
3.659786
TGTGTGGACTGTATGCAAGTAC
58.340
45.455
0.00
0.00
0.00
2.73
412
482
3.576550
TCTGTGTGGACTGTATGCAAGTA
59.423
43.478
0.00
0.00
0.00
2.24
433
4263
3.310501
GCAATGCATGGGCTTTATTTGTC
59.689
43.478
14.52
0.00
41.91
3.18
442
4272
3.142838
GACGGCAATGCATGGGCT
61.143
61.111
23.92
11.97
41.91
5.19
514
4348
1.360852
TCTCTCTCTGCCTCCTTCCTT
59.639
52.381
0.00
0.00
0.00
3.36
515
4349
1.006813
TCTCTCTCTGCCTCCTTCCT
58.993
55.000
0.00
0.00
0.00
3.36
521
4355
2.024918
CGCTCTCTCTCTCTGCCTC
58.975
63.158
0.00
0.00
0.00
4.70
538
4378
2.644078
GTTTTCAGTCTGCTTCAAGCG
58.356
47.619
4.57
0.00
46.26
4.68
566
4406
1.522900
CTCCCCCTCTCTCTCTCTCT
58.477
60.000
0.00
0.00
0.00
3.10
634
4821
6.209589
TCTCTCTCTCTCTCTACTGCTATCTC
59.790
46.154
0.00
0.00
0.00
2.75
635
4822
6.077993
TCTCTCTCTCTCTCTACTGCTATCT
58.922
44.000
0.00
0.00
0.00
1.98
636
4823
6.209589
TCTCTCTCTCTCTCTCTACTGCTATC
59.790
46.154
0.00
0.00
0.00
2.08
657
4846
0.251386
TGTGGCCTCGTCTCTTCTCT
60.251
55.000
3.32
0.00
0.00
3.10
659
4848
1.536943
GGTGTGGCCTCGTCTCTTCT
61.537
60.000
3.32
0.00
0.00
2.85
660
4849
1.079750
GGTGTGGCCTCGTCTCTTC
60.080
63.158
3.32
0.00
0.00
2.87
661
4850
1.837051
TGGTGTGGCCTCGTCTCTT
60.837
57.895
3.32
0.00
38.35
2.85
703
4892
4.495336
CTCTGCTGCTCGCTCGCT
62.495
66.667
0.00
0.00
40.11
4.93
705
4894
4.869440
CCCTCTGCTGCTCGCTCG
62.869
72.222
0.00
0.00
40.11
5.03
706
4895
4.527583
CCCCTCTGCTGCTCGCTC
62.528
72.222
0.00
0.00
40.11
5.03
708
4897
4.527583
CTCCCCTCTGCTGCTCGC
62.528
72.222
0.00
0.00
39.77
5.03
709
4898
2.757508
TCTCCCCTCTGCTGCTCG
60.758
66.667
0.00
0.00
0.00
5.03
710
4899
1.381056
TCTCTCCCCTCTGCTGCTC
60.381
63.158
0.00
0.00
0.00
4.26
711
4900
1.381599
CTCTCTCCCCTCTGCTGCT
60.382
63.158
0.00
0.00
0.00
4.24
712
4901
1.381056
TCTCTCTCCCCTCTGCTGC
60.381
63.158
0.00
0.00
0.00
5.25
713
4902
0.258484
TCTCTCTCTCCCCTCTGCTG
59.742
60.000
0.00
0.00
0.00
4.41
714
4903
0.552848
CTCTCTCTCTCCCCTCTGCT
59.447
60.000
0.00
0.00
0.00
4.24
715
4904
0.550914
TCTCTCTCTCTCCCCTCTGC
59.449
60.000
0.00
0.00
0.00
4.26
716
4905
2.105477
CTCTCTCTCTCTCTCCCCTCTG
59.895
59.091
0.00
0.00
0.00
3.35
721
4910
3.309296
TCTCTCTCTCTCTCTCTCTCCC
58.691
54.545
0.00
0.00
0.00
4.30
819
5008
4.016851
AGAGTATACAACAGGGTACAGGGA
60.017
45.833
5.50
0.00
0.00
4.20
823
5014
6.069556
AGAGAGAGAGTATACAACAGGGTACA
60.070
42.308
5.50
0.00
0.00
2.90
839
5030
2.101415
TGCGAGAGAGAGAGAGAGAGAG
59.899
54.545
0.00
0.00
0.00
3.20
840
5031
2.107366
TGCGAGAGAGAGAGAGAGAGA
58.893
52.381
0.00
0.00
0.00
3.10
841
5032
2.205074
GTGCGAGAGAGAGAGAGAGAG
58.795
57.143
0.00
0.00
0.00
3.20
842
5033
1.470805
CGTGCGAGAGAGAGAGAGAGA
60.471
57.143
0.00
0.00
0.00
3.10
843
5034
0.930310
CGTGCGAGAGAGAGAGAGAG
59.070
60.000
0.00
0.00
0.00
3.20
844
5035
1.087202
GCGTGCGAGAGAGAGAGAGA
61.087
60.000
0.00
0.00
0.00
3.10
845
5036
1.351707
GCGTGCGAGAGAGAGAGAG
59.648
63.158
0.00
0.00
0.00
3.20
846
5037
2.109739
GGCGTGCGAGAGAGAGAGA
61.110
63.158
0.00
0.00
0.00
3.10
847
5038
2.321668
CTGGCGTGCGAGAGAGAGAG
62.322
65.000
0.00
0.00
0.00
3.20
848
5039
2.359975
TGGCGTGCGAGAGAGAGA
60.360
61.111
0.00
0.00
0.00
3.10
874
5066
1.230497
CTCCCTCCCTCGCTTCCTA
59.770
63.158
0.00
0.00
0.00
2.94
878
5070
3.684628
TCCCTCCCTCCCTCGCTT
61.685
66.667
0.00
0.00
0.00
4.68
887
5079
3.773154
GGCTCTCCCTCCCTCCCT
61.773
72.222
0.00
0.00
0.00
4.20
888
5080
4.095400
TGGCTCTCCCTCCCTCCC
62.095
72.222
0.00
0.00
0.00
4.30
889
5081
2.766229
GTGGCTCTCCCTCCCTCC
60.766
72.222
0.00
0.00
0.00
4.30
890
5082
1.383803
ATGTGGCTCTCCCTCCCTC
60.384
63.158
0.00
0.00
0.00
4.30
1470
5687
2.186903
GAGAATCCGAAGCCGCCA
59.813
61.111
0.00
0.00
0.00
5.69
1601
5818
2.768492
GCCGAGGATGCTTTGCTGG
61.768
63.158
0.00
0.00
0.00
4.85
1698
5915
2.615288
CCCAGGAGAGGGGGCTTT
60.615
66.667
0.00
0.00
45.60
3.51
1743
5960
2.499685
GGCGGCTGGTACTGGTAG
59.500
66.667
0.00
0.00
0.00
3.18
1792
6021
1.757118
GTTGTGATCGGAGATGGAGGA
59.243
52.381
0.00
0.00
45.12
3.71
1794
6023
1.482182
TGGTTGTGATCGGAGATGGAG
59.518
52.381
0.00
0.00
45.12
3.86
1798
6027
0.179100
CGCTGGTTGTGATCGGAGAT
60.179
55.000
0.00
0.00
45.12
2.75
1881
6110
2.388232
CGTGCCTAGGTGGTTTCGC
61.388
63.158
11.31
0.00
38.35
4.70
1938
6167
3.706373
GGCTGGAGCTGGAACGGA
61.706
66.667
0.00
0.00
41.70
4.69
2433
6662
1.081641
CAGCTTCAGCAACGGCAAG
60.082
57.895
0.75
0.00
45.16
4.01
2622
6851
1.062488
AACCAACAGGGAGGCTCACT
61.062
55.000
15.01
15.01
41.15
3.41
2742
6971
0.827925
AGTGCTGTGAGAACGGGAGA
60.828
55.000
0.00
0.00
0.00
3.71
2916
7145
0.664166
CAGCAAACACATTCCGCCAC
60.664
55.000
0.00
0.00
0.00
5.01
3759
7997
5.942826
GGATCAAAAGAGGCCCTATTCTATG
59.057
44.000
0.00
0.00
0.00
2.23
3819
8057
6.645790
AGATGAGCATGACATTTTAATCCC
57.354
37.500
0.00
0.00
0.00
3.85
3852
8090
6.601741
TGCAATCAAACAACCAAAAATCTC
57.398
33.333
0.00
0.00
0.00
2.75
3905
8143
5.241728
GGTTTCTAGCATCCACTCAAACTTT
59.758
40.000
0.00
0.00
0.00
2.66
3986
8224
9.099454
CCTCTGTAAAGAAATATAAGAGCGTTT
57.901
33.333
0.00
0.00
0.00
3.60
3987
8225
7.711339
CCCTCTGTAAAGAAATATAAGAGCGTT
59.289
37.037
0.00
0.00
0.00
4.84
3988
8226
7.069578
TCCCTCTGTAAAGAAATATAAGAGCGT
59.930
37.037
0.00
0.00
0.00
5.07
3989
8227
7.434492
TCCCTCTGTAAAGAAATATAAGAGCG
58.566
38.462
0.00
0.00
0.00
5.03
3990
8228
8.425703
ACTCCCTCTGTAAAGAAATATAAGAGC
58.574
37.037
0.00
0.00
0.00
4.09
4056
8301
7.537596
TGTTGGTTGTTTGATTCATAGGATT
57.462
32.000
0.00
0.00
0.00
3.01
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.