Multiple sequence alignment - TraesCS6B01G276800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G276800 chr6B 100.000 3273 0 0 1 3273 501061684 501064956 0.000000e+00 6045.0
1 TraesCS6B01G276800 chr6B 90.786 1552 116 11 972 2523 500894209 500895733 0.000000e+00 2049.0
2 TraesCS6B01G276800 chr6A 93.395 3043 122 25 3 2985 459879431 459876408 0.000000e+00 4433.0
3 TraesCS6B01G276800 chr6A 90.792 1553 114 15 972 2523 460006423 460004899 0.000000e+00 2049.0
4 TraesCS6B01G276800 chr6A 84.641 306 24 7 2984 3273 459876379 459876081 1.920000e-72 283.0
5 TraesCS6B01G276800 chr6A 96.226 53 1 1 2544 2595 459876927 459876875 5.820000e-13 86.1
6 TraesCS6B01G276800 chr6D 95.281 2543 74 17 1 2518 322573282 322570761 0.000000e+00 3989.0
7 TraesCS6B01G276800 chr6D 90.528 1552 119 12 972 2523 322586997 322585474 0.000000e+00 2026.0
8 TraesCS6B01G276800 chr6D 93.846 520 22 7 2759 3273 322570521 322570007 0.000000e+00 774.0
9 TraesCS6B01G276800 chr6D 96.226 212 7 1 2556 2767 322570760 322570550 2.420000e-91 346.0
10 TraesCS6B01G276800 chr2D 88.260 1201 130 7 1021 2217 15133806 15134999 0.000000e+00 1426.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G276800 chr6B 501061684 501064956 3272 False 6045.0 6045 100.000000 1 3273 1 chr6B.!!$F2 3272
1 TraesCS6B01G276800 chr6B 500894209 500895733 1524 False 2049.0 2049 90.786000 972 2523 1 chr6B.!!$F1 1551
2 TraesCS6B01G276800 chr6A 460004899 460006423 1524 True 2049.0 2049 90.792000 972 2523 1 chr6A.!!$R1 1551
3 TraesCS6B01G276800 chr6A 459876081 459879431 3350 True 1600.7 4433 91.420667 3 3273 3 chr6A.!!$R2 3270
4 TraesCS6B01G276800 chr6D 322585474 322586997 1523 True 2026.0 2026 90.528000 972 2523 1 chr6D.!!$R1 1551
5 TraesCS6B01G276800 chr6D 322570007 322573282 3275 True 1703.0 3989 95.117667 1 3273 3 chr6D.!!$R2 3272
6 TraesCS6B01G276800 chr2D 15133806 15134999 1193 False 1426.0 1426 88.260000 1021 2217 1 chr2D.!!$F1 1196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.179043 TCCTATAAATTGCGCGGCCA 60.179 50.0 8.83 0.0 0.0 5.36 F
1598 1646 0.321210 CCATGGTGCCTGTTCGTGTA 60.321 55.0 2.57 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1628 1676 0.038618 CATCGTTGGTGACGGTCTCA 60.039 55.0 9.88 5.28 42.62 3.27 R
2413 2461 0.601046 CAGCGGTTTCAGCAGACTCA 60.601 55.0 0.00 0.00 37.01 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.179043 TCCTATAAATTGCGCGGCCA 60.179 50.000 8.83 0.00 0.00 5.36
173 174 1.077089 GTTAGCTTCACCGCGTCCTC 61.077 60.000 4.92 0.00 34.40 3.71
281 287 9.959749 TGAAAACATGGCTAGTTAGTTAAAAAG 57.040 29.630 0.00 0.00 0.00 2.27
323 329 2.682494 TAGGTGGGTGGGTCGCTC 60.682 66.667 0.00 0.00 0.00 5.03
328 334 2.125326 TGGGTGGGTCGCTCTATCG 61.125 63.158 0.00 0.00 0.00 2.92
526 535 1.078708 GGTGGATGTGTACACGGGG 60.079 63.158 20.61 0.00 40.30 5.73
527 536 1.675219 GTGGATGTGTACACGGGGT 59.325 57.895 20.61 7.08 27.43 4.95
528 537 0.390735 GTGGATGTGTACACGGGGTC 60.391 60.000 20.61 14.70 27.43 4.46
529 538 1.153706 GGATGTGTACACGGGGTCG 60.154 63.158 20.61 0.00 43.02 4.79
530 539 1.808390 GATGTGTACACGGGGTCGC 60.808 63.158 20.61 1.80 40.63 5.19
531 540 3.305177 ATGTGTACACGGGGTCGCC 62.305 63.158 20.61 0.00 40.63 5.54
564 579 1.014044 GTTGCTTCTCATGGCGACGA 61.014 55.000 0.00 0.00 33.89 4.20
710 751 4.268884 CCTTCGGATCTTTAAAGCTTCGAG 59.731 45.833 18.84 13.92 0.00 4.04
711 752 4.713824 TCGGATCTTTAAAGCTTCGAGA 57.286 40.909 16.49 11.99 0.00 4.04
905 947 5.759963 CCTGGACGTGTAGATTAGTCATAC 58.240 45.833 0.00 0.00 35.49 2.39
969 1013 5.293324 GTGATTTTGTGGCACGACTCATATA 59.707 40.000 17.72 0.00 0.00 0.86
1289 1337 0.591659 TCTCTGACGACGTTGGTCTG 59.408 55.000 17.87 17.05 41.16 3.51
1517 1565 1.973281 CCGCAAGAATGGCACCTGT 60.973 57.895 0.00 0.00 30.95 4.00
1598 1646 0.321210 CCATGGTGCCTGTTCGTGTA 60.321 55.000 2.57 0.00 0.00 2.90
1616 1664 2.093106 GTACACACCGTCCTCATCTCT 58.907 52.381 0.00 0.00 0.00 3.10
1628 1676 2.905085 CCTCATCTCTACCCAGCATGAT 59.095 50.000 0.00 0.00 39.69 2.45
1757 1805 4.814294 GGCCGCTTCGTCATCGGT 62.814 66.667 0.00 0.00 44.58 4.69
1868 1916 1.302511 CAAGGACCCGACCAAGGTG 60.303 63.158 0.00 0.00 37.88 4.00
1892 1940 1.746615 CAGTGGCGCCTACATTGCT 60.747 57.895 29.70 10.86 0.00 3.91
2069 2117 2.487265 GGAGAACTTTGACTTCAGGCCA 60.487 50.000 5.01 0.00 0.00 5.36
2174 2222 1.488705 ATGCCGACTTCACCTGGGAA 61.489 55.000 0.00 0.00 0.00 3.97
2225 2273 4.034975 GCATCTGCCTAAGAACAAGACATC 59.965 45.833 0.00 0.00 38.79 3.06
2226 2274 3.849911 TCTGCCTAAGAACAAGACATCG 58.150 45.455 0.00 0.00 29.54 3.84
2227 2275 2.346803 TGCCTAAGAACAAGACATCGC 58.653 47.619 0.00 0.00 0.00 4.58
2267 2315 1.051008 TCTGCTGCCTCTCAAGTTCA 58.949 50.000 0.00 0.00 0.00 3.18
2270 2318 1.134128 TGCTGCCTCTCAAGTTCAACA 60.134 47.619 0.00 0.00 0.00 3.33
2342 2390 1.663702 GCGACGTGCTACACTGGTT 60.664 57.895 0.00 0.00 41.73 3.67
2344 2392 1.282248 CGACGTGCTACACTGGTTGG 61.282 60.000 0.00 0.00 31.34 3.77
2459 2511 1.262683 GTGCAGTTTGCTCTGTCACTC 59.737 52.381 2.48 1.40 45.31 3.51
2460 2512 0.510359 GCAGTTTGCTCTGTCACTCG 59.490 55.000 0.00 0.00 40.96 4.18
2461 2513 0.510359 CAGTTTGCTCTGTCACTCGC 59.490 55.000 0.00 0.00 0.00 5.03
2462 2514 0.390860 AGTTTGCTCTGTCACTCGCT 59.609 50.000 0.00 0.00 0.00 4.93
2512 2564 6.263617 TGTTTTGTGTAGTTTCCCCTCATAAC 59.736 38.462 0.00 0.00 0.00 1.89
2518 2570 2.572104 AGTTTCCCCTCATAACGCTCTT 59.428 45.455 0.00 0.00 0.00 2.85
2519 2571 3.009143 AGTTTCCCCTCATAACGCTCTTT 59.991 43.478 0.00 0.00 0.00 2.52
2520 2572 2.981859 TCCCCTCATAACGCTCTTTC 57.018 50.000 0.00 0.00 0.00 2.62
2521 2573 2.467880 TCCCCTCATAACGCTCTTTCT 58.532 47.619 0.00 0.00 0.00 2.52
2522 2574 2.838202 TCCCCTCATAACGCTCTTTCTT 59.162 45.455 0.00 0.00 0.00 2.52
2523 2575 2.939103 CCCCTCATAACGCTCTTTCTTG 59.061 50.000 0.00 0.00 0.00 3.02
2524 2576 2.939103 CCCTCATAACGCTCTTTCTTGG 59.061 50.000 0.00 0.00 0.00 3.61
2525 2577 3.369471 CCCTCATAACGCTCTTTCTTGGA 60.369 47.826 0.00 0.00 0.00 3.53
2526 2578 3.868077 CCTCATAACGCTCTTTCTTGGAG 59.132 47.826 0.00 0.00 0.00 3.86
2527 2579 4.382040 CCTCATAACGCTCTTTCTTGGAGA 60.382 45.833 0.00 0.00 33.03 3.71
2528 2580 4.748892 TCATAACGCTCTTTCTTGGAGAG 58.251 43.478 0.00 0.00 42.78 3.20
2536 2588 5.413309 CTCTTTCTTGGAGAGCCTAAAGA 57.587 43.478 0.00 0.00 36.58 2.52
2537 2589 5.413309 TCTTTCTTGGAGAGCCTAAAGAG 57.587 43.478 0.00 0.00 35.33 2.85
2538 2590 3.618690 TTCTTGGAGAGCCTAAAGAGC 57.381 47.619 0.00 0.00 34.31 4.09
2539 2591 1.834263 TCTTGGAGAGCCTAAAGAGCC 59.166 52.381 0.00 0.00 34.31 4.70
2540 2592 1.556911 CTTGGAGAGCCTAAAGAGCCA 59.443 52.381 0.00 0.00 34.31 4.75
2541 2593 1.885049 TGGAGAGCCTAAAGAGCCAT 58.115 50.000 0.00 0.00 34.31 4.40
2542 2594 1.487976 TGGAGAGCCTAAAGAGCCATG 59.512 52.381 0.00 0.00 34.31 3.66
2543 2595 1.488393 GGAGAGCCTAAAGAGCCATGT 59.512 52.381 0.00 0.00 0.00 3.21
2544 2596 2.092699 GGAGAGCCTAAAGAGCCATGTT 60.093 50.000 0.00 0.00 0.00 2.71
2545 2597 2.941720 GAGAGCCTAAAGAGCCATGTTG 59.058 50.000 0.00 0.00 0.00 3.33
2546 2598 2.307098 AGAGCCTAAAGAGCCATGTTGT 59.693 45.455 0.00 0.00 0.00 3.32
2547 2599 2.421424 GAGCCTAAAGAGCCATGTTGTG 59.579 50.000 0.00 0.00 0.00 3.33
2548 2600 2.162681 GCCTAAAGAGCCATGTTGTGT 58.837 47.619 0.00 0.00 0.00 3.72
2549 2601 3.009033 AGCCTAAAGAGCCATGTTGTGTA 59.991 43.478 0.00 0.00 0.00 2.90
2550 2602 3.375299 GCCTAAAGAGCCATGTTGTGTAG 59.625 47.826 0.00 0.00 0.00 2.74
2551 2603 4.579869 CCTAAAGAGCCATGTTGTGTAGT 58.420 43.478 0.00 0.00 0.00 2.73
2552 2604 5.003804 CCTAAAGAGCCATGTTGTGTAGTT 58.996 41.667 0.00 0.00 0.00 2.24
2553 2605 5.122396 CCTAAAGAGCCATGTTGTGTAGTTC 59.878 44.000 0.00 0.00 0.00 3.01
2554 2606 3.059352 AGAGCCATGTTGTGTAGTTCC 57.941 47.619 0.00 0.00 0.00 3.62
2566 2618 3.118038 TGTGTAGTTCCCCTCATAATGCC 60.118 47.826 0.00 0.00 0.00 4.40
2741 2844 4.047166 AGTGGTTTGATGGGATCTGGATA 58.953 43.478 0.00 0.00 0.00 2.59
2742 2845 4.478317 AGTGGTTTGATGGGATCTGGATAA 59.522 41.667 0.00 0.00 0.00 1.75
2752 2855 4.721776 TGGGATCTGGATAATATACTGCCC 59.278 45.833 0.00 0.00 0.00 5.36
2761 2871 5.221843 GGATAATATACTGCCCCTGTTCACA 60.222 44.000 0.00 0.00 0.00 3.58
2816 2964 1.210722 TGGTGTAAACTGCAGTCCACA 59.789 47.619 29.70 26.59 0.00 4.17
2822 2970 2.740055 CTGCAGTCCACACGCCTC 60.740 66.667 5.25 0.00 0.00 4.70
2838 2986 4.893601 TCGCCGTGCCACGTTTCA 62.894 61.111 16.99 0.00 40.58 2.69
2856 3004 1.156736 CATCGCCGGTCACTCTTTTT 58.843 50.000 1.90 0.00 0.00 1.94
2896 3044 5.697633 GGAATTGTTTGCTGATCATTGTGTT 59.302 36.000 0.00 0.00 0.00 3.32
2924 3072 1.686115 GGTTGTCCATATGGCCTGCTT 60.686 52.381 17.58 0.00 34.44 3.91
2940 3088 1.374758 CTTGGCCTGACGTCACTCC 60.375 63.158 15.76 18.01 0.00 3.85
2941 3089 1.821061 CTTGGCCTGACGTCACTCCT 61.821 60.000 23.86 0.00 0.00 3.69
3049 3233 3.858247 TGACAACTCTGAGAGCATGATG 58.142 45.455 18.98 9.59 32.04 3.07
3133 3330 8.741101 TCTGTTTATTGAATGTTGCATTGTAC 57.259 30.769 0.00 0.00 0.00 2.90
3157 3354 2.618709 CTGTCGGCAGAAAGGTTTTCTT 59.381 45.455 12.86 0.00 45.28 2.52
3236 3437 0.036294 GTGTCTGAGCTTACCACCCC 60.036 60.000 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.605058 CGGTGTTGTCCGGAGATCCT 61.605 60.000 3.06 0.00 45.88 3.24
173 174 3.751698 ACATGGATGATCGAAGCATGATG 59.248 43.478 13.77 11.54 0.00 3.07
280 286 1.684869 CCCTTTCGCCTCTCTCTCTCT 60.685 57.143 0.00 0.00 0.00 3.10
281 287 0.744281 CCCTTTCGCCTCTCTCTCTC 59.256 60.000 0.00 0.00 0.00 3.20
282 288 0.686112 CCCCTTTCGCCTCTCTCTCT 60.686 60.000 0.00 0.00 0.00 3.10
283 289 0.973496 ACCCCTTTCGCCTCTCTCTC 60.973 60.000 0.00 0.00 0.00 3.20
424 433 3.195610 AGATCCATAGCAAAGTGACGACA 59.804 43.478 0.00 0.00 0.00 4.35
478 487 3.054139 ACAGCAGCCCAAGATCAAGAATA 60.054 43.478 0.00 0.00 0.00 1.75
479 488 2.291411 ACAGCAGCCCAAGATCAAGAAT 60.291 45.455 0.00 0.00 0.00 2.40
578 611 3.670377 GGCCTGCCAACGACCAAC 61.670 66.667 2.58 0.00 35.81 3.77
659 700 0.977627 ATCTCACTGTGGCCCATCGA 60.978 55.000 8.11 0.00 0.00 3.59
744 785 1.720694 GAGGAAGGAGCGACGAGAGG 61.721 65.000 0.00 0.00 0.00 3.69
905 947 6.676950 ACAGAGCATTATAGATGAGAACTCG 58.323 40.000 0.00 0.00 0.00 4.18
1082 1126 1.595109 CTGGTCGCACAGCTTGTCA 60.595 57.895 0.00 0.00 0.00 3.58
1289 1337 0.458669 CCTTGCAATGGTCAGCATCC 59.541 55.000 0.00 0.00 40.94 3.51
1394 1442 1.303948 CATGATGCCCTGGTCACCA 59.696 57.895 0.00 0.00 0.00 4.17
1427 1475 2.521547 TCAGCTCAGGAGTCTCATCA 57.478 50.000 1.47 0.00 0.00 3.07
1598 1646 2.093106 GTAGAGATGAGGACGGTGTGT 58.907 52.381 0.00 0.00 0.00 3.72
1616 1664 0.752658 CGGTCTCATCATGCTGGGTA 59.247 55.000 0.00 0.00 0.00 3.69
1628 1676 0.038618 CATCGTTGGTGACGGTCTCA 60.039 55.000 9.88 5.28 42.62 3.27
1646 1694 3.371097 GAGGTCCGCGGCAATCTCA 62.371 63.158 23.51 0.00 0.00 3.27
1952 2000 1.755959 GGCACACCAATGGCATATGAA 59.244 47.619 6.97 0.00 44.34 2.57
2025 2073 1.361993 CGAGCTTGAGGATCTCCCG 59.638 63.158 0.00 0.00 40.87 5.14
2225 2273 1.762708 AGAATAACCCCAATGTGGCG 58.237 50.000 0.00 0.00 35.79 5.69
2226 2274 2.168313 CCAAGAATAACCCCAATGTGGC 59.832 50.000 0.00 0.00 35.79 5.01
2227 2275 3.440127 ACCAAGAATAACCCCAATGTGG 58.560 45.455 0.00 0.00 37.25 4.17
2267 2315 3.765968 AAGGATCCCGCCTTTTGTT 57.234 47.368 8.55 0.00 45.85 2.83
2342 2390 0.324368 ACTGATCACTAGACGGCCCA 60.324 55.000 0.00 0.00 0.00 5.36
2344 2392 0.528684 GCACTGATCACTAGACGGCC 60.529 60.000 0.00 0.00 0.00 6.13
2413 2461 0.601046 CAGCGGTTTCAGCAGACTCA 60.601 55.000 0.00 0.00 37.01 3.41
2428 2476 0.870393 AAACTGCACATCACTCAGCG 59.130 50.000 0.00 0.00 0.00 5.18
2459 2511 1.217882 AAAGTGAAAGTGACGGAGCG 58.782 50.000 0.00 0.00 0.00 5.03
2460 2512 2.612212 TGAAAAGTGAAAGTGACGGAGC 59.388 45.455 0.00 0.00 0.00 4.70
2461 2513 6.727824 ATATGAAAAGTGAAAGTGACGGAG 57.272 37.500 0.00 0.00 0.00 4.63
2462 2514 6.934645 AGAATATGAAAAGTGAAAGTGACGGA 59.065 34.615 0.00 0.00 0.00 4.69
2518 2570 2.237392 GGCTCTTTAGGCTCTCCAAGAA 59.763 50.000 0.00 0.00 44.73 2.52
2519 2571 1.834263 GGCTCTTTAGGCTCTCCAAGA 59.166 52.381 0.00 0.00 44.73 3.02
2520 2572 2.323968 GGCTCTTTAGGCTCTCCAAG 57.676 55.000 0.00 0.00 44.73 3.61
2529 2581 4.579869 ACTACACAACATGGCTCTTTAGG 58.420 43.478 0.00 0.00 0.00 2.69
2530 2582 5.122396 GGAACTACACAACATGGCTCTTTAG 59.878 44.000 0.00 0.00 0.00 1.85
2531 2583 5.001232 GGAACTACACAACATGGCTCTTTA 58.999 41.667 0.00 0.00 0.00 1.85
2532 2584 3.821033 GGAACTACACAACATGGCTCTTT 59.179 43.478 0.00 0.00 0.00 2.52
2533 2585 3.412386 GGAACTACACAACATGGCTCTT 58.588 45.455 0.00 0.00 0.00 2.85
2534 2586 2.290323 GGGAACTACACAACATGGCTCT 60.290 50.000 0.00 0.00 0.00 4.09
2535 2587 2.084546 GGGAACTACACAACATGGCTC 58.915 52.381 0.00 0.00 0.00 4.70
2536 2588 1.271926 GGGGAACTACACAACATGGCT 60.272 52.381 0.00 0.00 0.00 4.75
2537 2589 1.173913 GGGGAACTACACAACATGGC 58.826 55.000 0.00 0.00 0.00 4.40
2538 2590 2.039746 TGAGGGGAACTACACAACATGG 59.960 50.000 0.00 0.00 0.00 3.66
2539 2591 3.417069 TGAGGGGAACTACACAACATG 57.583 47.619 0.00 0.00 0.00 3.21
2540 2592 5.772393 TTATGAGGGGAACTACACAACAT 57.228 39.130 0.00 0.00 0.00 2.71
2541 2593 5.496556 CATTATGAGGGGAACTACACAACA 58.503 41.667 0.00 0.00 0.00 3.33
2542 2594 4.335594 GCATTATGAGGGGAACTACACAAC 59.664 45.833 0.00 0.00 0.00 3.32
2543 2595 4.523083 GCATTATGAGGGGAACTACACAA 58.477 43.478 0.00 0.00 0.00 3.33
2544 2596 3.118038 GGCATTATGAGGGGAACTACACA 60.118 47.826 0.00 0.00 0.00 3.72
2545 2597 3.477530 GGCATTATGAGGGGAACTACAC 58.522 50.000 0.00 0.00 0.00 2.90
2546 2598 2.441750 GGGCATTATGAGGGGAACTACA 59.558 50.000 0.00 0.00 0.00 2.74
2547 2599 2.711547 AGGGCATTATGAGGGGAACTAC 59.288 50.000 0.00 0.00 0.00 2.73
2548 2600 3.074857 AGGGCATTATGAGGGGAACTA 57.925 47.619 0.00 0.00 0.00 2.24
2549 2601 1.912862 AGGGCATTATGAGGGGAACT 58.087 50.000 0.00 0.00 0.00 3.01
2550 2602 2.755952 AAGGGCATTATGAGGGGAAC 57.244 50.000 0.00 0.00 0.00 3.62
2551 2603 2.858768 AGAAAGGGCATTATGAGGGGAA 59.141 45.455 0.00 0.00 0.00 3.97
2552 2604 2.502745 AGAAAGGGCATTATGAGGGGA 58.497 47.619 0.00 0.00 0.00 4.81
2553 2605 3.225940 GAAGAAAGGGCATTATGAGGGG 58.774 50.000 0.00 0.00 0.00 4.79
2554 2606 3.225940 GGAAGAAAGGGCATTATGAGGG 58.774 50.000 0.00 0.00 0.00 4.30
2566 2618 5.175127 GCTCTTTAGACTCTGGAAGAAAGG 58.825 45.833 7.64 0.88 46.34 3.11
2677 2780 8.764524 TTACATTTACCAATTGCATAAACCAC 57.235 30.769 12.67 0.00 0.00 4.16
2741 2844 4.165950 TCATGTGAACAGGGGCAGTATATT 59.834 41.667 0.00 0.00 0.00 1.28
2742 2845 3.716353 TCATGTGAACAGGGGCAGTATAT 59.284 43.478 0.00 0.00 0.00 0.86
2752 2855 3.303881 TTCGAGAGTCATGTGAACAGG 57.696 47.619 0.00 0.00 0.00 4.00
2761 2871 9.583765 CAATGTATATGATGATTCGAGAGTCAT 57.416 33.333 10.26 10.26 39.94 3.06
2831 2979 2.025418 GTGACCGGCGATGAAACGT 61.025 57.895 9.30 0.00 35.59 3.99
2838 2986 3.625745 AAAAAGAGTGACCGGCGAT 57.374 47.368 9.30 0.00 0.00 4.58
2856 3004 3.611025 ATTCCAACCAAAGTCAGGGAA 57.389 42.857 0.00 0.00 35.99 3.97
2857 3005 3.230134 CAATTCCAACCAAAGTCAGGGA 58.770 45.455 0.00 0.00 0.00 4.20
2924 3072 1.407656 AAAGGAGTGACGTCAGGCCA 61.408 55.000 28.50 4.74 0.00 5.36
3236 3437 8.671384 TCAGATTTTTCTATAACCAATACCCG 57.329 34.615 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.