AutoCloner

Multiple sequence alignment - TraesCS6B01G275700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G275700	chr6B	100.000	3338	0	0	1	3338	498545155	498541818	0.000000e+00	6165.0
1	TraesCS6B01G275700	chr6B	80.363	662	99	21	1652	2293	498852254	498852904	1.080000e-129	473.0
2	TraesCS6B01G275700	chr6B	74.395	496	84	23	1100	1585	498851680	498852142	4.430000e-39	172.0
3	TraesCS6B01G275700	chr6A	92.029	2346	103	34	679	2982	462225446	462227749	0.000000e+00	3219.0
4	TraesCS6B01G275700	chr6A	76.375	1236	200	55	1100	2294	461987718	461986534	6.210000e-162	580.0
5	TraesCS6B01G275700	chr6A	88.136	295	24	6	2980	3265	462228071	462228363	1.150000e-89	340.0
6	TraesCS6B01G275700	chr6D	93.522	1976	77	22	672	2623	324782714	324784662	0.000000e+00	2892.0
7	TraesCS6B01G275700	chr6D	90.489	736	38	11	2618	3336	324784998	324785718	0.000000e+00	942.0
8	TraesCS6B01G275700	chr6D	76.547	1228	210	44	1100	2294	324599424	324598242	4.770000e-168	601.0
9	TraesCS6B01G275700	chr3D	89.732	1529	100	22	964	2470	580521643	580523136	0.000000e+00	1901.0
10	TraesCS6B01G275700	chr3D	83.281	317	24	16	2632	2937	580523310	580523608	7.100000e-67	265.0
11	TraesCS6B01G275700	chr3D	83.750	80	10	1	672	751	580520729	580520805	4.620000e-09	73.1
12	TraesCS6B01G275700	chr3A	89.209	1529	113	20	964	2470	715973647	715975145	0.000000e+00	1862.0
13	TraesCS6B01G275700	chr3A	83.099	426	38	20	2632	3039	715975331	715975740	1.140000e-94	357.0
14	TraesCS6B01G275700	chr3B	88.687	1538	113	24	964	2470	775735414	775736921	0.000000e+00	1820.0
15	TraesCS6B01G275700	chr3B	90.708	678	56	7	1	672	611231654	611230978	0.000000e+00	896.0
16	TraesCS6B01G275700	chr3B	90.089	676	62	4	1	671	134117940	134118615	0.000000e+00	872.0
17	TraesCS6B01G275700	chr3B	83.714	700	60	30	2672	3336	775737106	775737786	2.200000e-171	612.0
18	TraesCS6B01G275700	chr2B	92.035	678	45	9	1	672	494352426	494351752	0.000000e+00	944.0
19	TraesCS6B01G275700	chr2B	89.349	676	66	6	1	671	494320769	494320095	0.000000e+00	845.0
20	TraesCS6B01G275700	chr5B	89.941	676	61	5	1	669	377383893	377384568	0.000000e+00	865.0
21	TraesCS6B01G275700	chr1B	89.349	676	65	7	1	671	569657270	569657943	0.000000e+00	843.0
22	TraesCS6B01G275700	chr4B	88.640	669	69	7	1	663	511860792	511861459	0.000000e+00	808.0
23	TraesCS6B01G275700	chr4B	88.296	675	63	12	1	672	410438612	410437951	0.000000e+00	795.0
24	TraesCS6B01G275700	chr4B	87.407	675	73	8	1	671	549697488	549698154	0.000000e+00	765.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G275700	chr6B	498541818	498545155	3337	True	6165.000000	6165	100.000000	1	3338	1	chr6B.!!$R1	3337
1	TraesCS6B01G275700	chr6B	498851680	498852904	1224	False	322.500000	473	77.379000	1100	2293	2	chr6B.!!$F1	1193
2	TraesCS6B01G275700	chr6A	462225446	462228363	2917	False	1779.500000	3219	90.082500	679	3265	2	chr6A.!!$F1	2586
3	TraesCS6B01G275700	chr6A	461986534	461987718	1184	True	580.000000	580	76.375000	1100	2294	1	chr6A.!!$R1	1194
4	TraesCS6B01G275700	chr6D	324782714	324785718	3004	False	1917.000000	2892	92.005500	672	3336	2	chr6D.!!$F1	2664
5	TraesCS6B01G275700	chr6D	324598242	324599424	1182	True	601.000000	601	76.547000	1100	2294	1	chr6D.!!$R1	1194
6	TraesCS6B01G275700	chr3D	580520729	580523608	2879	False	746.366667	1901	85.587667	672	2937	3	chr3D.!!$F1	2265
7	TraesCS6B01G275700	chr3A	715973647	715975740	2093	False	1109.500000	1862	86.154000	964	3039	2	chr3A.!!$F1	2075
8	TraesCS6B01G275700	chr3B	775735414	775737786	2372	False	1216.000000	1820	86.200500	964	3336	2	chr3B.!!$F2	2372
9	TraesCS6B01G275700	chr3B	611230978	611231654	676	True	896.000000	896	90.708000	1	672	1	chr3B.!!$R1	671
10	TraesCS6B01G275700	chr3B	134117940	134118615	675	False	872.000000	872	90.089000	1	671	1	chr3B.!!$F1	670
11	TraesCS6B01G275700	chr2B	494351752	494352426	674	True	944.000000	944	92.035000	1	672	1	chr2B.!!$R2	671
12	TraesCS6B01G275700	chr2B	494320095	494320769	674	True	845.000000	845	89.349000	1	671	1	chr2B.!!$R1	670
13	TraesCS6B01G275700	chr5B	377383893	377384568	675	False	865.000000	865	89.941000	1	669	1	chr5B.!!$F1	668
14	TraesCS6B01G275700	chr1B	569657270	569657943	673	False	843.000000	843	89.349000	1	671	1	chr1B.!!$F1	670
15	TraesCS6B01G275700	chr4B	511860792	511861459	667	False	808.000000	808	88.640000	1	663	1	chr4B.!!$F1	662
16	TraesCS6B01G275700	chr4B	410437951	410438612	661	True	795.000000	795	88.296000	1	672	1	chr4B.!!$R1	671
17	TraesCS6B01G275700	chr4B	549697488	549698154	666	False	765.000000	765	87.407000	1	671	1	chr4B.!!$F2	670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
644	662	0.106708	GCCACAGACAGACAAGTCCA	59.893	55.0	0.0	0.0	39.34	4.02	F
1072	1732	0.252467	AGCTCCTAGTCCCAGTGCTT	60.252	55.0	0.0	0.0	0.00	3.91	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1706	2470	0.741326	CTCAGGTCGGTGATGACGAT	59.259	55.0	0.0	0.0	42.82	3.73	R
2664	3834	0.036306	CCAGTGTCCAGGTGGGTAAC	59.964	60.0	0.0	0.0	38.11	2.50	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
94	96	2.103153	TTCGATCCTAGATTGCCCCT	57.897	50.000	0.00	0.00	0.00	4.79
100	107	1.009552	TCCTAGATTGCCCCTCCTTGA	59.990	52.381	0.00	0.00	0.00	3.02
131	138	5.546887	GGTGGCTAACCCTATTTATAGAGGT	59.453	44.000	0.00	2.19	44.02	3.85
163	170	3.374042	TCCCAAATATTGAGCGGGAAA	57.626	42.857	11.07	0.00	43.02	3.13
164	171	3.702792	TCCCAAATATTGAGCGGGAAAA	58.297	40.909	11.07	0.00	43.02	2.29
178	185	1.065109	GAAAAGCGCCAACAACGGT	59.935	52.632	2.29	0.00	44.16	4.83
185	192	1.846541	CGCCAACAACGGTCATTTTT	58.153	45.000	0.00	0.00	0.00	1.94
236	243	2.104281	ACTAAAGTTGGTCTTCGGCTGT	59.896	45.455	0.00	0.00	35.02	4.40
281	288	3.637273	GGGCTCCACGGTGACCTT	61.637	66.667	10.28	0.00	34.19	3.50
288	295	1.246056	CCACGGTGACCTTCGTCCTA	61.246	60.000	10.28	0.00	38.32	2.94
324	331	2.571212	TGGTCTCGTTGCACTGAAATT	58.429	42.857	0.00	0.00	0.00	1.82
330	337	4.572795	TCTCGTTGCACTGAAATTGTAACA	59.427	37.500	0.00	0.00	38.93	2.41
338	345	8.795786	TGCACTGAAATTGTAACATTTACTTC	57.204	30.769	0.00	0.00	0.00	3.01
358	365	1.391933	ATGCCTCGATACTCCACGCA	61.392	55.000	0.00	0.00	0.00	5.24
442	450	1.202302	TCTCGATCGTCATGACTTGCC	60.202	52.381	22.95	8.87	0.00	4.52
453	461	1.005630	GACTTGCCTCACGAGCACT	60.006	57.895	0.00	0.00	40.69	4.40
466	474	2.572284	GCACTTCGCGAGGTACCT	59.428	61.111	24.15	16.26	0.00	3.08
468	476	1.352156	GCACTTCGCGAGGTACCTTG	61.352	60.000	24.15	23.26	0.00	3.61
503	512	4.441695	CCTCGCGAGCTTGCCTGA	62.442	66.667	30.49	11.49	0.00	3.86
572	583	1.587054	CCTCGCGAAGGTCTTGAGT	59.413	57.895	11.33	0.00	40.67	3.41
592	603	3.833070	AGTTTGAGTAGACGAAGATGGGT	59.167	43.478	0.00	0.00	0.00	4.51
601	612	0.461870	CGAAGATGGGTCGCATTGGA	60.462	55.000	3.60	0.00	0.00	3.53
636	654	3.694746	CCGTAGGCCACAGACAGA	58.305	61.111	5.01	0.00	46.14	3.41
643	661	0.603975	GGCCACAGACAGACAAGTCC	60.604	60.000	0.00	0.00	39.34	3.85
644	662	0.106708	GCCACAGACAGACAAGTCCA	59.893	55.000	0.00	0.00	39.34	4.02
646	664	1.688735	CCACAGACAGACAAGTCCAGA	59.311	52.381	0.00	0.00	39.34	3.86
676	695	1.000843	TCCAGAACACCGACAGATGTG	59.999	52.381	0.00	0.00	38.44	3.21
686	705	4.445718	CACCGACAGATGTGTATTAGCATC	59.554	45.833	0.00	0.00	41.13	3.91
697	716	8.768957	ATGTGTATTAGCATCATAGCTACTTG	57.231	34.615	0.00	0.00	46.07	3.16
760	791	6.164176	GCGCTTATAACAGGTCCAAGTATAT	58.836	40.000	0.00	0.00	0.00	0.86
778	809	8.824781	CAAGTATATGTCCAGATTGAACTTCTG	58.175	37.037	0.00	0.00	40.25	3.02
809	840	7.388224	TGTGCGTTTTCCTATTGTACAATCTAA	59.612	33.333	24.00	13.72	32.50	2.10
810	841	8.231837	GTGCGTTTTCCTATTGTACAATCTAAA	58.768	33.333	24.00	18.06	32.50	1.85
1052	1708	2.420022	GCTCGCAGCCTCTAAATTTTCA	59.580	45.455	0.00	0.00	34.48	2.69
1072	1732	0.252467	AGCTCCTAGTCCCAGTGCTT	60.252	55.000	0.00	0.00	0.00	3.91
1075	1735	0.545309	TCCTAGTCCCAGTGCTTGCT	60.545	55.000	0.00	0.00	0.00	3.91
1171	1834	1.004560	CTCGCTTCTTGTGAGCCCA	60.005	57.895	0.00	0.00	44.91	5.36
1225	1888	2.375766	GCACGACAAGTCTGCTCCG	61.376	63.158	13.61	0.00	33.80	4.63
1706	2470	3.636231	CCGGGAAGCCTGTGACCA	61.636	66.667	0.00	0.00	0.00	4.02
1901	2685	6.078202	TCTTCAGTCTTCAGTCTACAGTTG	57.922	41.667	0.00	0.00	0.00	3.16
2047	2847	3.325135	ACTTCAAGACCCTGATCGAGTTT	59.675	43.478	0.00	0.00	0.00	2.66
2135	2935	4.415150	CACAGGACTGGGGCGCAT	62.415	66.667	10.83	0.00	34.19	4.73
2150	2956	2.176546	CATTGTGGCGCCTCAACG	59.823	61.111	37.98	29.91	33.21	4.10
2152	2958	2.034879	ATTGTGGCGCCTCAACGAG	61.035	57.895	37.98	0.00	33.21	4.18
2160	2966	4.020617	CCTCAACGAGGGCAGGCA	62.021	66.667	1.84	0.00	45.43	4.75
2191	2997	4.116328	TTCTCGCTCCGGCTCACG	62.116	66.667	0.00	0.00	43.80	4.35
2220	3026	1.803519	GCAGGAAGCTCGTCGTCAG	60.804	63.158	0.00	0.00	41.15	3.51
2445	3264	5.181748	GCATTCCCCTAGTGATGTATCATC	58.818	45.833	0.00	3.16	39.30	2.92
2446	3265	5.280164	GCATTCCCCTAGTGATGTATCATCA	60.280	44.000	8.14	8.14	39.30	3.07
2447	3266	6.577838	GCATTCCCCTAGTGATGTATCATCAT	60.578	42.308	14.13	7.47	39.30	2.45
2464	3283	1.076533	CATGTGTGTAGTCCGTCCGC	61.077	60.000	0.00	0.00	0.00	5.54
2471	3290	0.179153	GTAGTCCGTCCGCCTGTAAC	60.179	60.000	0.00	0.00	0.00	2.50
2475	3294	0.393820	TCCGTCCGCCTGTAACTTTT	59.606	50.000	0.00	0.00	0.00	2.27
2644	3814	7.309805	GGGAAATTACTGAAGGTGCAAATTACT	60.310	37.037	0.00	0.00	0.00	2.24
2651	3821	6.372659	ACTGAAGGTGCAAATTACTGATACTG	59.627	38.462	0.00	0.00	0.00	2.74
2659	3829	9.146984	GTGCAAATTACTGATACTGTGTACTAA	57.853	33.333	0.00	0.00	0.00	2.24
2727	3905	0.251354	ATTCTGCTCGCCTGTCATGT	59.749	50.000	0.00	0.00	0.00	3.21
2801	3981	0.108945	GCAGAGCCTTGAATGTTGCC	60.109	55.000	0.00	0.00	0.00	4.52
2859	4040	7.819644	ACCGTTTGTTGAAAGTACTTTTAGTT	58.180	30.769	21.40	0.00	32.11	2.24
2870	4051	9.491675	GAAAGTACTTTTAGTTAAGGAGCTTCT	57.508	33.333	21.40	0.00	32.11	2.85
2873	4060	8.308207	AGTACTTTTAGTTAAGGAGCTTCTCAG	58.692	37.037	0.00	0.00	31.08	3.35
2882	4073	2.229302	AGGAGCTTCTCAGTTGTACGTC	59.771	50.000	0.00	0.00	31.08	4.34
2992	4532	4.631131	TCGGCATTATGAACTGGATAGTG	58.369	43.478	0.00	0.00	37.19	2.74
2993	4533	4.343814	TCGGCATTATGAACTGGATAGTGA	59.656	41.667	0.00	0.00	37.19	3.41
2994	4534	4.449068	CGGCATTATGAACTGGATAGTGAC	59.551	45.833	0.00	0.00	37.19	3.67
2995	4535	4.757149	GGCATTATGAACTGGATAGTGACC	59.243	45.833	0.00	0.00	37.19	4.02
2996	4536	5.368145	GCATTATGAACTGGATAGTGACCA	58.632	41.667	0.00	0.00	37.19	4.02
2997	4537	5.822519	GCATTATGAACTGGATAGTGACCAA	59.177	40.000	0.00	0.00	37.19	3.67
2998	4538	6.238484	GCATTATGAACTGGATAGTGACCAAC	60.238	42.308	0.00	0.00	37.19	3.77
2999	4539	3.695830	TGAACTGGATAGTGACCAACC	57.304	47.619	0.00	0.00	37.19	3.77
3000	4540	2.028476	TGAACTGGATAGTGACCAACCG	60.028	50.000	0.00	0.00	37.19	4.44
3001	4541	0.902531	ACTGGATAGTGACCAACCGG	59.097	55.000	0.00	0.00	36.95	5.28
3002	4542	3.355318	AACTGGATAGTGACCAACCGGT	61.355	50.000	0.00	0.00	42.39	5.28
3003	4543	4.834743	AACTGGATAGTGACCAACCGGTT	61.835	47.826	15.86	15.86	40.54	4.44
3020	4560	0.961019	GTTTGGCATGTGGCTCTCAA	59.039	50.000	8.09	0.00	44.01	3.02
3190	4741	6.241645	AGTTTGTTTTCCCAACATTTTTCCA	58.758	32.000	0.00	0.00	0.00	3.53
3203	4754	7.117092	CCAACATTTTTCCAAAACTATTACCGG	59.883	37.037	0.00	0.00	0.00	5.28
3292	4843	6.701340	AGGGAAAGCTAATCAAAAATTGACC	58.299	36.000	0.00	0.00	43.48	4.02
3293	4844	5.576774	GGGAAAGCTAATCAAAAATTGACCG	59.423	40.000	0.00	0.00	43.48	4.79
3294	4845	5.062183	GGAAAGCTAATCAAAAATTGACCGC	59.938	40.000	0.00	0.00	43.48	5.68
3295	4846	5.391312	AAGCTAATCAAAAATTGACCGCT	57.609	34.783	0.00	1.69	43.48	5.52
3296	4847	4.986622	AGCTAATCAAAAATTGACCGCTC	58.013	39.130	0.00	0.00	43.48	5.03
3297	4848	4.105486	GCTAATCAAAAATTGACCGCTCC	58.895	43.478	0.00	0.00	43.48	4.70
3298	4849	2.919666	ATCAAAAATTGACCGCTCCG	57.080	45.000	0.00	0.00	43.48	4.63
3299	4850	0.239879	TCAAAAATTGACCGCTCCGC	59.760	50.000	0.00	0.00	34.08	5.54

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
94	96	1.150536	GCCACCACCAAGTCAAGGA	59.849	57.895	0.00	0.00	0.00	3.36
131	138	2.059756	ATTTGGGAAGAGGACCAGGA	57.940	50.000	0.00	0.00	38.16	3.86
163	170	1.452145	AATGACCGTTGTTGGCGCTT	61.452	50.000	7.64	0.00	0.00	4.68
164	171	1.452145	AAATGACCGTTGTTGGCGCT	61.452	50.000	7.64	0.00	0.00	5.92
178	185	8.607713	TGTACTAGATGTTCCCCTTAAAAATGA	58.392	33.333	0.00	0.00	0.00	2.57
185	192	8.849543	ATAAGTTGTACTAGATGTTCCCCTTA	57.150	34.615	0.00	0.00	0.00	2.69
236	243	0.955428	GTCATCGCCAGTGCCTTTGA	60.955	55.000	0.00	0.00	0.00	2.69
281	288	2.045242	AGCAGAGCGGTAGGACGA	60.045	61.111	0.00	0.00	35.47	4.20
288	295	2.345244	CAAGACCAGCAGAGCGGT	59.655	61.111	5.47	5.47	37.92	5.68
324	331	5.483811	TCGAGGCATGAAGTAAATGTTACA	58.516	37.500	0.00	0.00	0.00	2.41
330	337	5.070446	TGGAGTATCGAGGCATGAAGTAAAT	59.930	40.000	0.00	0.00	34.37	1.40
338	345	3.185651	CGTGGAGTATCGAGGCATG	57.814	57.895	0.00	0.00	34.37	4.06
358	365	2.586293	GCAAAGGGGGCAAGCACAT	61.586	57.895	0.00	0.00	0.00	3.21
453	461	0.036765	AATGCAAGGTACCTCGCGAA	60.037	50.000	19.77	3.72	0.00	4.70
466	474	0.543277	AGGCGGAGAGATCAATGCAA	59.457	50.000	0.00	0.00	0.00	4.08
468	476	0.602372	GGAGGCGGAGAGATCAATGC	60.602	60.000	0.00	0.00	0.00	3.56
470	478	1.337118	GAGGAGGCGGAGAGATCAAT	58.663	55.000	0.00	0.00	0.00	2.57
516	526	1.183549	GGACGACAGAAGGCTTCCTA	58.816	55.000	23.09	0.00	31.13	2.94
562	573	4.142790	TCGTCTACTCAAACTCAAGACCT	58.857	43.478	0.00	0.00	34.42	3.85
572	583	3.119602	CGACCCATCTTCGTCTACTCAAA	60.120	47.826	0.00	0.00	0.00	2.69
592	603	0.888736	CAAGTGGTGGTCCAATGCGA	60.889	55.000	0.00	0.00	46.15	5.10
601	612	2.111043	CGTGGCTCAAGTGGTGGT	59.889	61.111	0.00	0.00	0.00	4.16
632	643	1.343069	GGGTCTCTGGACTTGTCTGT	58.657	55.000	0.61	0.00	41.82	3.41
636	654	1.747444	AATGGGGTCTCTGGACTTGT	58.253	50.000	0.00	0.00	41.82	3.16
643	661	2.040278	TGTTCTGGAAATGGGGTCTCTG	59.960	50.000	0.00	0.00	0.00	3.35
644	662	2.040412	GTGTTCTGGAAATGGGGTCTCT	59.960	50.000	0.00	0.00	0.00	3.10
646	664	1.075536	GGTGTTCTGGAAATGGGGTCT	59.924	52.381	0.00	0.00	0.00	3.85
697	716	6.805760	GTCAAACTTACTGCCTGTACTACTAC	59.194	42.308	0.00	0.00	0.00	2.73
760	791	3.071457	TGCTCAGAAGTTCAATCTGGACA	59.929	43.478	5.50	0.73	43.58	4.02
778	809	3.119849	ACAATAGGAAAACGCACATGCTC	60.120	43.478	1.82	0.00	39.32	4.26
826	1095	0.517316	AAATGCGAGCCAAAGTCGTC	59.483	50.000	0.00	0.00	39.69	4.20
1052	1708	0.252467	AGCACTGGGACTAGGAGCTT	60.252	55.000	0.00	0.00	31.84	3.74
1075	1735	1.730501	CTGCTGCTTGTAGCTTGCTA	58.269	50.000	11.58	0.00	42.97	3.49
1211	1874	0.033504	TTGACCGGAGCAGACTTGTC	59.966	55.000	9.46	0.00	0.00	3.18
1217	1880	3.706373	GCCCTTGACCGGAGCAGA	61.706	66.667	9.46	0.00	0.00	4.26
1225	1888	0.105964	GGTTTTTGTGGCCCTTGACC	59.894	55.000	0.00	0.00	0.00	4.02
1396	2070	0.033642	TGAATGTGGGTGCGACGTAA	59.966	50.000	0.00	0.00	0.00	3.18
1706	2470	0.741326	CTCAGGTCGGTGATGACGAT	59.259	55.000	0.00	0.00	42.82	3.73
1924	2710	1.089920	GAACGCCAAGATCAGCACAT	58.910	50.000	0.00	0.00	0.00	3.21
2119	2919	3.650950	AATGCGCCCCAGTCCTGT	61.651	61.111	4.18	0.00	0.00	4.00
2135	2935	2.664851	CTCGTTGAGGCGCCACAA	60.665	61.111	31.70	31.70	0.00	3.33
2445	3264	1.076533	GCGGACGGACTACACACATG	61.077	60.000	0.00	0.00	0.00	3.21
2446	3265	1.214589	GCGGACGGACTACACACAT	59.785	57.895	0.00	0.00	0.00	3.21
2447	3266	2.646719	GCGGACGGACTACACACA	59.353	61.111	0.00	0.00	0.00	3.72
2545	3370	3.188159	ACACACAACTTGGTACATCGT	57.812	42.857	0.00	0.00	39.30	3.73
2659	3829	1.459921	TCCAGGTGGGTAACGGTGT	60.460	57.895	0.00	0.00	38.11	4.16
2664	3834	0.036306	CCAGTGTCCAGGTGGGTAAC	59.964	60.000	0.00	0.00	38.11	2.50
2780	3958	1.271656	GCAACATTCAAGGCTCTGCTT	59.728	47.619	0.00	0.00	0.00	3.91
2801	3981	8.627208	AATAATTGAGTAGGGCAATCAGTATG	57.373	34.615	0.00	0.00	35.06	2.39
2859	4040	3.825014	ACGTACAACTGAGAAGCTCCTTA	59.175	43.478	0.00	0.00	0.00	2.69
2870	4051	2.094390	GCCTACATGGACGTACAACTGA	60.094	50.000	3.58	0.00	38.35	3.41
2873	4060	1.997606	GTGCCTACATGGACGTACAAC	59.002	52.381	3.58	0.00	38.35	3.32
2882	4073	8.031864	CAGATTTATAGAGTAGTGCCTACATGG	58.968	40.741	12.89	0.00	39.22	3.66
2909	4100	4.514066	AGACACAACCGAAGATTTTGTACC	59.486	41.667	0.00	0.00	0.00	3.34
2995	4535	1.006337	CCACATGCCAAACCGGTTG	60.006	57.895	23.08	14.70	36.97	3.77
2996	4536	2.866726	GCCACATGCCAAACCGGTT	61.867	57.895	15.86	15.86	36.97	4.44
2997	4537	3.302344	GCCACATGCCAAACCGGT	61.302	61.111	0.00	0.00	36.97	5.28
2998	4538	2.990967	AGCCACATGCCAAACCGG	60.991	61.111	0.00	0.00	42.71	5.28
2999	4539	1.926511	GAGAGCCACATGCCAAACCG	61.927	60.000	0.00	0.00	42.71	4.44
3000	4540	0.895100	TGAGAGCCACATGCCAAACC	60.895	55.000	0.00	0.00	42.71	3.27
3001	4541	0.961019	TTGAGAGCCACATGCCAAAC	59.039	50.000	0.00	0.00	42.71	2.93
3002	4542	1.702182	TTTGAGAGCCACATGCCAAA	58.298	45.000	0.00	0.00	42.71	3.28
3003	4543	1.702182	TTTTGAGAGCCACATGCCAA	58.298	45.000	0.00	0.00	42.71	4.52
3020	4560	8.842358	TTCTACAAGTGGATCGTCTTAATTTT	57.158	30.769	1.66	0.00	0.00	1.82
3190	4741	4.359996	ACCTCTCTCCCGGTAATAGTTTT	58.640	43.478	0.00	0.00	0.00	2.43
3298	4849	5.982465	TTGGTTTGCTTTTTCACATAAGC	57.018	34.783	0.00	0.00	45.36	3.09
3299	4850	9.786105	AATTTTTGGTTTGCTTTTTCACATAAG	57.214	25.926	0.00	0.00	0.00	1.73

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.