Multiple sequence alignment - TraesCS6B01G275500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G275500 chr6B 100.000 3223 0 0 1 3223 497888371 497885149 0.000000e+00 5952.0
1 TraesCS6B01G275500 chr6B 85.622 1085 95 28 284 1357 629580480 629581514 0.000000e+00 1083.0
2 TraesCS6B01G275500 chr6B 85.530 1085 96 28 284 1357 628894531 628895565 0.000000e+00 1077.0
3 TraesCS6B01G275500 chr6B 89.206 491 53 0 1054 1544 628893705 628894195 5.910000e-172 614.0
4 TraesCS6B01G275500 chr6B 89.206 491 53 0 1054 1544 629579654 629580144 5.910000e-172 614.0
5 TraesCS6B01G275500 chr6B 81.159 483 47 26 284 763 628893258 628893699 6.620000e-92 348.0
6 TraesCS6B01G275500 chr6B 81.159 483 47 26 284 763 629579207 629579648 6.620000e-92 348.0
7 TraesCS6B01G275500 chr6B 89.051 274 26 3 1924 2197 628895575 628895844 1.430000e-88 337.0
8 TraesCS6B01G275500 chr6B 88.686 274 27 3 1924 2197 629581524 629581793 6.660000e-87 331.0
9 TraesCS6B01G275500 chr6B 89.041 146 14 1 494 637 628893030 628893175 2.550000e-41 180.0
10 TraesCS6B01G275500 chr6B 83.744 203 12 8 1804 1998 628894201 628894390 4.270000e-39 172.0
11 TraesCS6B01G275500 chr6B 83.744 203 12 8 1804 1998 629580150 629580339 4.270000e-39 172.0
12 TraesCS6B01G275500 chr6B 84.000 125 18 2 98 222 628892703 628892825 5.650000e-23 119.0
13 TraesCS6B01G275500 chr6B 84.000 125 18 2 98 222 629578652 629578774 5.650000e-23 119.0
14 TraesCS6B01G275500 chr6B 100.000 36 0 0 326 361 628892934 628892969 2.080000e-07 67.6
15 TraesCS6B01G275500 chr6B 100.000 36 0 0 326 361 629578883 629578918 2.080000e-07 67.6
16 TraesCS6B01G275500 chr6D 94.895 2527 81 15 1 2499 325389921 325392427 0.000000e+00 3908.0
17 TraesCS6B01G275500 chr6D 86.500 1000 94 23 284 1276 417474074 417473109 0.000000e+00 1061.0
18 TraesCS6B01G275500 chr6D 86.100 1000 98 23 284 1276 416965093 416964128 0.000000e+00 1038.0
19 TraesCS6B01G275500 chr6D 93.007 572 32 4 2657 3223 325392570 325393138 0.000000e+00 828.0
20 TraesCS6B01G275500 chr6D 82.173 948 113 30 824 1744 415515407 415514489 0.000000e+00 763.0
21 TraesCS6B01G275500 chr6D 85.191 601 50 10 1597 2197 416016124 416015563 5.990000e-162 580.0
22 TraesCS6B01G275500 chr6D 85.191 601 50 10 1597 2197 416123666 416123105 5.990000e-162 580.0
23 TraesCS6B01G275500 chr6D 84.859 601 51 11 1597 2197 416963742 416963182 1.300000e-158 569.0
24 TraesCS6B01G275500 chr6D 87.356 435 41 5 1764 2197 417472583 417472162 1.340000e-133 486.0
25 TraesCS6B01G275500 chr6D 96.154 182 7 0 1363 1544 417479899 417479718 6.760000e-77 298.0
26 TraesCS6B01G275500 chr6D 95.055 182 9 0 1363 1544 416016510 416016329 1.460000e-73 287.0
27 TraesCS6B01G275500 chr6D 95.055 182 9 0 1363 1544 416124052 416123871 1.460000e-73 287.0
28 TraesCS6B01G275500 chr6D 95.055 182 9 0 1363 1544 416964128 416963947 1.460000e-73 287.0
29 TraesCS6B01G275500 chr6D 85.818 275 18 13 494 764 417480383 417480126 4.100000e-69 272.0
30 TraesCS6B01G275500 chr6D 75.696 539 64 36 101 637 417481098 417480625 1.170000e-49 207.0
31 TraesCS6B01G275500 chr6D 90.278 144 12 1 496 637 416018020 416017877 1.530000e-43 187.0
32 TraesCS6B01G275500 chr6D 90.278 144 12 1 496 637 416125927 416125784 1.530000e-43 187.0
33 TraesCS6B01G275500 chr6D 90.278 144 12 1 496 637 416965297 416965154 1.530000e-43 187.0
34 TraesCS6B01G275500 chr6D 95.690 116 4 1 2546 2661 325392425 325392539 5.490000e-43 185.0
35 TraesCS6B01G275500 chr6D 83.607 122 18 2 101 222 416018557 416018438 2.630000e-21 113.0
36 TraesCS6B01G275500 chr6D 83.898 118 17 2 101 218 416965692 416965577 9.450000e-21 111.0
37 TraesCS6B01G275500 chr6D 93.846 65 4 0 1810 1874 416016318 416016254 7.360000e-17 99.0
38 TraesCS6B01G275500 chr6D 93.846 65 4 0 1810 1874 416123860 416123796 7.360000e-17 99.0
39 TraesCS6B01G275500 chr6D 93.846 65 4 0 1810 1874 416963936 416963872 7.360000e-17 99.0
40 TraesCS6B01G275500 chr6D 93.846 65 4 0 1810 1874 417472917 417472853 7.360000e-17 99.0
41 TraesCS6B01G275500 chr6D 79.851 134 12 10 326 458 416018151 416018032 2.060000e-12 84.2
42 TraesCS6B01G275500 chr6D 79.851 134 12 10 326 458 416126058 416125939 2.060000e-12 84.2
43 TraesCS6B01G275500 chr6D 79.851 134 12 10 326 458 416965428 416965309 2.060000e-12 84.2
44 TraesCS6B01G275500 chr6A 94.783 2300 72 14 1 2272 463528173 463530452 0.000000e+00 3539.0
45 TraesCS6B01G275500 chr6A 94.753 324 13 3 2340 2660 463530452 463530774 4.800000e-138 501.0
46 TraesCS6B01G275500 chr6A 92.565 269 20 0 2955 3223 463531474 463531742 1.400000e-103 387.0
47 TraesCS6B01G275500 chr6A 92.969 128 8 1 2739 2866 463530959 463531085 5.490000e-43 185.0
48 TraesCS6B01G275500 chr6A 98.276 58 1 0 2657 2714 463530806 463530863 5.690000e-18 102.0
49 TraesCS6B01G275500 chr4D 100.000 31 0 0 2736 2766 246121831 246121861 1.250000e-04 58.4
50 TraesCS6B01G275500 chr7B 96.774 31 1 0 2736 2766 686841375 686841405 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G275500 chr6B 497885149 497888371 3222 True 5952.000000 5952 100.000000 1 3223 1 chr6B.!!$R1 3222
1 TraesCS6B01G275500 chr6B 629578652 629581793 3141 False 390.657143 1083 87.488143 98 2197 7 chr6B.!!$F2 2099
2 TraesCS6B01G275500 chr6B 628892703 628895844 3141 False 364.325000 1077 87.716375 98 2197 8 chr6B.!!$F1 2099
3 TraesCS6B01G275500 chr6D 325389921 325393138 3217 False 1640.333333 3908 94.530667 1 3223 3 chr6D.!!$F1 3222
4 TraesCS6B01G275500 chr6D 415514489 415515407 918 True 763.000000 763 82.173000 824 1744 1 chr6D.!!$R1 920
5 TraesCS6B01G275500 chr6D 417472162 417474074 1912 True 548.666667 1061 89.234000 284 2197 3 chr6D.!!$R5 1913
6 TraesCS6B01G275500 chr6D 416963182 416965692 2510 True 339.314286 1038 87.698143 101 2197 7 chr6D.!!$R4 2096
7 TraesCS6B01G275500 chr6D 417479718 417481098 1380 True 259.000000 298 85.889333 101 1544 3 chr6D.!!$R6 1443
8 TraesCS6B01G275500 chr6D 416123105 416126058 2953 True 247.440000 580 88.844200 326 2197 5 chr6D.!!$R3 1871
9 TraesCS6B01G275500 chr6D 416015563 416018557 2994 True 225.033333 580 87.971333 101 2197 6 chr6D.!!$R2 2096
10 TraesCS6B01G275500 chr6A 463528173 463531742 3569 False 942.800000 3539 94.669200 1 3223 5 chr6A.!!$F1 3222

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 617 1.030457 GGAACGAAGGCCTCTCGATA 58.97 55.0 30.92 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2264 5078 1.207329 CTGGCACTGGTAGGAGGTTAC 59.793 57.143 0.0 0.0 0.0 2.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.281761 CCCGTCAGCAGCAAAGGT 60.282 61.111 0.00 0.00 0.00 3.50
232 479 1.439679 CCTGCCGTTAGTCTTGAACC 58.560 55.000 0.00 0.00 0.00 3.62
278 525 1.303236 TTGTGTTGGGCTCCATCGG 60.303 57.895 0.00 0.00 31.53 4.18
364 612 2.294078 CCCAGGAACGAAGGCCTCT 61.294 63.158 5.23 0.00 34.23 3.69
365 613 1.219393 CCAGGAACGAAGGCCTCTC 59.781 63.158 5.23 5.21 34.23 3.20
366 614 1.153745 CAGGAACGAAGGCCTCTCG 60.154 63.158 25.82 25.82 34.23 4.04
369 617 1.030457 GGAACGAAGGCCTCTCGATA 58.970 55.000 30.92 0.00 0.00 2.92
371 619 2.351932 GGAACGAAGGCCTCTCGATATC 60.352 54.545 30.92 24.75 0.00 1.63
372 620 1.249407 ACGAAGGCCTCTCGATATCC 58.751 55.000 30.92 5.53 0.00 2.59
385 633 6.260870 TCTCGATATCCTAGCATTCTGTTC 57.739 41.667 0.00 0.00 0.00 3.18
389 648 5.119898 CGATATCCTAGCATTCTGTTCAAGC 59.880 44.000 0.00 0.00 0.00 4.01
414 673 9.499479 GCTTCATAGGATTCTTGATTGATAGAA 57.501 33.333 0.00 0.00 35.08 2.10
639 903 8.553153 TGTCTGGTTCCATCCAATTATTACTTA 58.447 33.333 0.00 0.00 37.01 2.24
640 904 8.837389 GTCTGGTTCCATCCAATTATTACTTAC 58.163 37.037 0.00 0.00 37.01 2.34
694 2641 7.765307 TGCTTTCTATCCATTTGATCTTTCAC 58.235 34.615 0.00 0.00 34.76 3.18
772 2719 5.011738 AGGTTACCAACGAGAGAAGATTTCA 59.988 40.000 3.51 0.00 0.00 2.69
804 2751 1.418342 CTACGCCACGAAACATCCGG 61.418 60.000 0.00 0.00 0.00 5.14
924 2873 5.220080 GCATGTCATGTTCAATTAGTTTGCG 60.220 40.000 14.26 0.00 35.16 4.85
1043 3694 1.102978 AATTACCATGGGAAGCGCAC 58.897 50.000 16.30 2.54 0.00 5.34
1188 3839 7.914427 TGGCTTAAATCTCTTGAGACCTATA 57.086 36.000 2.11 0.00 0.00 1.31
1202 3853 6.173339 TGAGACCTATAAGTTTTTCAGCAGG 58.827 40.000 0.00 0.00 0.00 4.85
1217 3868 4.851843 TCAGCAGGACATGAATTTGAGAT 58.148 39.130 0.00 0.00 0.00 2.75
1218 3870 4.638865 TCAGCAGGACATGAATTTGAGATG 59.361 41.667 0.00 0.00 0.00 2.90
1221 3873 5.531659 AGCAGGACATGAATTTGAGATGATC 59.468 40.000 0.00 0.00 0.00 2.92
1578 4365 0.817654 TGAGCGAATGATGACGAGGT 59.182 50.000 0.00 0.00 0.00 3.85
1580 4367 2.033424 TGAGCGAATGATGACGAGGTAG 59.967 50.000 0.00 0.00 0.00 3.18
1581 4368 2.290916 GAGCGAATGATGACGAGGTAGA 59.709 50.000 0.00 0.00 0.00 2.59
1583 4370 3.319405 AGCGAATGATGACGAGGTAGAAT 59.681 43.478 0.00 0.00 0.00 2.40
1587 4401 7.067615 AGCGAATGATGACGAGGTAGAATATAT 59.932 37.037 0.00 0.00 0.00 0.86
1684 4498 7.826252 GCTCCTGATTATTGGTACATACATGAT 59.174 37.037 0.00 0.00 39.30 2.45
1696 4510 7.119116 TGGTACATACATGATTGTTTGTGACTC 59.881 37.037 0.00 2.23 44.44 3.36
1905 4719 7.605691 AGATCGATAAATGGCAGAAGAATAAGG 59.394 37.037 0.00 0.00 0.00 2.69
1922 4736 3.982241 GTTGCACAGGCCAGGCAC 61.982 66.667 15.19 2.38 40.13 5.01
2075 4889 3.538591 TGAAGCCATAGTGAAGATGCAG 58.461 45.455 0.00 0.00 0.00 4.41
2318 5132 5.693104 ACTAAAACTAACGAAATCGACAGCA 59.307 36.000 10.16 0.00 43.02 4.41
2320 5134 4.584029 AACTAACGAAATCGACAGCATG 57.416 40.909 10.16 0.00 43.02 4.06
2331 5145 7.370836 CGAAATCGACAGCATGAAATACTAAAC 59.629 37.037 0.00 0.00 43.02 2.01
2337 5151 6.924111 ACAGCATGAAATACTAAACAAAGGG 58.076 36.000 0.00 0.00 39.69 3.95
2372 5186 2.375174 AGAATGGTGGTTTGCTGTCCTA 59.625 45.455 0.00 0.00 0.00 2.94
2380 5194 4.037222 TGGTTTGCTGTCCTAGGATGATA 58.963 43.478 16.27 0.00 0.00 2.15
2391 5205 8.012957 TGTCCTAGGATGATAGAAGAAGTTTC 57.987 38.462 16.27 0.00 0.00 2.78
2510 5324 6.933514 TGATGATTATGGTAGCATGGTCTA 57.066 37.500 17.58 6.77 0.00 2.59
2543 5359 6.912426 AGTTCCCTTCTCTTTTCCTTTTAGT 58.088 36.000 0.00 0.00 0.00 2.24
2547 5363 7.402862 TCCCTTCTCTTTTCCTTTTAGTATGG 58.597 38.462 0.00 0.00 0.00 2.74
2596 5413 9.688091 TGTATCCAAATAATTTGCAGGTACTAA 57.312 29.630 0.00 0.00 39.31 2.24
2637 5454 5.866159 TCTGCAGCTGATCCTATATATGG 57.134 43.478 20.43 0.00 0.00 2.74
2722 5671 8.338259 CACTGCCAATGTATACTACTCAAAATC 58.662 37.037 4.17 0.00 0.00 2.17
2741 5690 9.793259 TCAAAATCCAGTTATCTTTTCAGTACT 57.207 29.630 0.00 0.00 0.00 2.73
2768 5717 9.878599 CAAAATTCAGTTATCTTTTCAGTACGT 57.121 29.630 0.00 0.00 0.00 3.57
2795 5744 5.086104 TGCTTCATCAGGTTTAGGAGTAC 57.914 43.478 0.00 0.00 0.00 2.73
2796 5745 4.777896 TGCTTCATCAGGTTTAGGAGTACT 59.222 41.667 0.00 0.00 0.00 2.73
2797 5746 5.248477 TGCTTCATCAGGTTTAGGAGTACTT 59.752 40.000 0.00 0.00 0.00 2.24
2820 5772 2.762535 TGGGGAAGACATCGAAGTTC 57.237 50.000 0.00 0.00 0.00 3.01
2862 5814 8.986477 TTTAGCTATGCCTTTTCAAAAGAATC 57.014 30.769 11.73 1.22 0.00 2.52
2992 6245 9.512435 CTGATTCCAGTATTTCATGAATGTTTC 57.488 33.333 9.40 2.35 35.70 2.78
2996 6250 9.695526 TTCCAGTATTTCATGAATGTTTCTTTG 57.304 29.630 9.40 1.03 0.00 2.77
3009 6263 9.868277 TGAATGTTTCTTTGTTACATTGAAACT 57.132 25.926 26.86 17.08 43.72 2.66
3085 6339 3.770388 AGAGGTTCTTCAAGGCCTACTAC 59.230 47.826 5.16 0.00 0.00 2.73
3087 6341 2.418334 GGTTCTTCAAGGCCTACTACGG 60.418 54.545 5.16 0.00 0.00 4.02
3088 6342 1.481871 TCTTCAAGGCCTACTACGGG 58.518 55.000 5.16 0.00 0.00 5.28
3090 6344 1.829222 CTTCAAGGCCTACTACGGGAA 59.171 52.381 5.16 0.91 0.00 3.97
3135 6389 2.616842 CGTTATTAGTTGATGTGGCCCC 59.383 50.000 0.00 0.00 0.00 5.80
3138 6392 1.072266 TTAGTTGATGTGGCCCCTGT 58.928 50.000 0.00 0.00 0.00 4.00
3155 6409 5.806734 GCCCCTGTTAGTTTTGTCCTAGATT 60.807 44.000 0.00 0.00 0.00 2.40
3156 6410 6.577638 GCCCCTGTTAGTTTTGTCCTAGATTA 60.578 42.308 0.00 0.00 0.00 1.75
3166 6420 5.537300 TTGTCCTAGATTACTCAGATGGC 57.463 43.478 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.203337 GGGCTGCATATGGGCGAA 60.203 61.111 4.56 0.00 36.28 4.70
181 182 9.310449 TCAAGAACCTTTGAGTTATCTACTACT 57.690 33.333 0.00 0.00 37.17 2.57
278 525 3.541632 TCCAAGACTTGACACAAGGAAC 58.458 45.455 16.99 6.87 0.00 3.62
364 612 6.405278 TTGAACAGAATGCTAGGATATCGA 57.595 37.500 0.00 0.00 42.53 3.59
365 613 5.119898 GCTTGAACAGAATGCTAGGATATCG 59.880 44.000 0.00 0.00 42.53 2.92
366 614 6.229733 AGCTTGAACAGAATGCTAGGATATC 58.770 40.000 0.00 0.00 42.53 1.63
369 617 4.500499 AGCTTGAACAGAATGCTAGGAT 57.500 40.909 0.00 0.00 42.53 3.24
371 619 4.005650 TGAAGCTTGAACAGAATGCTAGG 58.994 43.478 2.10 0.00 42.53 3.02
372 620 5.814764 ATGAAGCTTGAACAGAATGCTAG 57.185 39.130 2.10 0.00 42.53 3.42
385 633 7.563888 TCAATCAAGAATCCTATGAAGCTTG 57.436 36.000 2.10 0.00 37.20 4.01
414 673 4.010349 GTTTCCAATCGATTCCTGGAACT 58.990 43.478 23.51 1.09 46.38 3.01
456 715 1.021390 CCTTTGCTGCTCGGTAGTGG 61.021 60.000 0.00 0.00 0.00 4.00
457 716 1.639298 GCCTTTGCTGCTCGGTAGTG 61.639 60.000 0.00 0.00 33.53 2.74
458 717 1.376037 GCCTTTGCTGCTCGGTAGT 60.376 57.895 0.00 0.00 33.53 2.73
459 718 3.490890 GCCTTTGCTGCTCGGTAG 58.509 61.111 0.00 0.00 33.53 3.18
639 903 2.092103 TGGGTACAAAACTGGAAGCAGT 60.092 45.455 0.00 0.00 37.60 4.40
640 904 2.293399 GTGGGTACAAAACTGGAAGCAG 59.707 50.000 0.00 0.00 37.60 4.24
694 2641 6.238759 GCTTATTAGCACCTCCCAATTACTTG 60.239 42.308 0.00 0.00 46.95 3.16
804 2751 1.219393 GTGCCTGGGAGTCTGTAGC 59.781 63.158 0.00 0.00 0.00 3.58
924 2873 5.007626 TCCGTTAGCTGCATAATTCAATCAC 59.992 40.000 1.02 0.00 0.00 3.06
1068 3719 5.734720 TCACTTACTTTAGGCAATCTCCAG 58.265 41.667 0.00 0.00 0.00 3.86
1188 3839 5.796424 ATTCATGTCCTGCTGAAAAACTT 57.204 34.783 0.00 0.00 35.20 2.66
1202 3853 6.939132 ACAGGATCATCTCAAATTCATGTC 57.061 37.500 0.00 0.00 25.97 3.06
1217 3868 4.183865 CGAGCTGAAACAATACAGGATCA 58.816 43.478 0.00 0.00 35.05 2.92
1218 3870 4.033358 CACGAGCTGAAACAATACAGGATC 59.967 45.833 0.00 0.00 35.05 3.36
1221 3873 3.325870 TCACGAGCTGAAACAATACAGG 58.674 45.455 0.00 0.00 35.05 4.00
1556 4343 2.474359 CCTCGTCATCATTCGCTCAATC 59.526 50.000 0.00 0.00 0.00 2.67
1684 4498 2.927477 GACAGTCACGAGTCACAAACAA 59.073 45.455 0.00 0.00 34.93 2.83
1696 4510 5.712217 TTTCAACAAACTAGACAGTCACG 57.288 39.130 2.66 0.00 32.29 4.35
1807 4621 7.009723 GTGCTCTGTCTAGATAAGTTACAAAGC 59.990 40.741 0.00 0.00 31.21 3.51
1905 4719 3.982241 GTGCCTGGCCTGTGCAAC 61.982 66.667 21.39 14.29 40.13 4.17
1922 4736 8.154649 AGTATACCTCAGTTTTTGTCAGTTTG 57.845 34.615 0.00 0.00 0.00 2.93
2061 4875 2.432146 TCGCCTTCTGCATCTTCACTAT 59.568 45.455 0.00 0.00 41.33 2.12
2075 4889 3.005261 TCTCTGCATCTTCTATCGCCTTC 59.995 47.826 0.00 0.00 0.00 3.46
2264 5078 1.207329 CTGGCACTGGTAGGAGGTTAC 59.793 57.143 0.00 0.00 0.00 2.50
2268 5082 2.293318 TGCTGGCACTGGTAGGAGG 61.293 63.158 0.00 0.00 0.00 4.30
2318 5132 8.782137 ATATGGCCCTTTGTTTAGTATTTCAT 57.218 30.769 0.00 0.00 0.00 2.57
2320 5134 9.350951 AGTATATGGCCCTTTGTTTAGTATTTC 57.649 33.333 0.00 0.00 0.00 2.17
2331 5145 7.554118 CCATTCTATACAGTATATGGCCCTTTG 59.446 40.741 0.00 0.00 0.00 2.77
2337 5151 6.947464 ACCACCATTCTATACAGTATATGGC 58.053 40.000 16.39 0.00 0.00 4.40
2372 5186 6.441924 TGACCTGAAACTTCTTCTATCATCCT 59.558 38.462 0.00 0.00 0.00 3.24
2380 5194 4.090761 TGCATGACCTGAAACTTCTTCT 57.909 40.909 0.00 0.00 0.00 2.85
2391 5205 1.267806 GACCAAGTGTTGCATGACCTG 59.732 52.381 0.00 0.00 0.00 4.00
2543 5359 5.611128 AATTGCATGTAACCAATGCCATA 57.389 34.783 0.00 0.00 40.34 2.74
2547 5363 3.374678 CCCAAATTGCATGTAACCAATGC 59.625 43.478 0.00 1.49 41.35 3.56
2596 5413 8.186821 GCTGCAGAATAAATTTCAGAACAGTAT 58.813 33.333 20.43 0.00 0.00 2.12
2637 5454 4.106925 CTGCCTCCCCTGCCAGTC 62.107 72.222 0.00 0.00 0.00 3.51
2795 5744 3.334583 TCGATGTCTTCCCCAAAGAAG 57.665 47.619 0.00 0.00 45.50 2.85
2796 5745 3.072476 ACTTCGATGTCTTCCCCAAAGAA 59.928 43.478 0.00 0.00 45.50 2.52
2797 5746 2.637872 ACTTCGATGTCTTCCCCAAAGA 59.362 45.455 0.00 0.00 41.81 2.52
2820 5772 6.199937 AGCTAAAAGTAATTCCATGTGCTG 57.800 37.500 0.00 0.00 0.00 4.41
2862 5814 4.536065 TGTTGATTTTTCGCTAGCAAGTG 58.464 39.130 16.45 0.00 34.35 3.16
2924 5960 5.599359 TCGTTCACAAAGATTATCGCAAA 57.401 34.783 0.00 0.00 0.00 3.68
2992 6245 8.702163 AACCAAAGAGTTTCAATGTAACAAAG 57.298 30.769 5.58 0.00 0.00 2.77
2996 6250 7.698970 TCGAAAACCAAAGAGTTTCAATGTAAC 59.301 33.333 0.00 0.00 39.00 2.50
3009 6263 3.510360 TGGGTTGTTTCGAAAACCAAAGA 59.490 39.130 25.61 9.69 46.41 2.52
3085 6339 3.119990 ACGTTTGATAAAGCATGTTCCCG 60.120 43.478 0.00 0.00 0.00 5.14
3087 6341 5.918011 TGAAACGTTTGATAAAGCATGTTCC 59.082 36.000 20.10 0.00 0.00 3.62
3088 6342 6.984740 TGAAACGTTTGATAAAGCATGTTC 57.015 33.333 20.10 0.00 0.00 3.18
3090 6344 6.305399 CGATTGAAACGTTTGATAAAGCATGT 59.695 34.615 20.10 0.55 0.00 3.21
3135 6389 9.360093 CTGAGTAATCTAGGACAAAACTAACAG 57.640 37.037 0.00 0.00 0.00 3.16
3155 6409 5.810587 GTCAATTAAAGTCGCCATCTGAGTA 59.189 40.000 0.00 0.00 0.00 2.59
3156 6410 4.631813 GTCAATTAAAGTCGCCATCTGAGT 59.368 41.667 0.00 0.00 0.00 3.41
3166 6420 7.050281 AGAAAGACGATGTCAATTAAAGTCG 57.950 36.000 0.00 0.00 34.60 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.