Multiple sequence alignment - TraesCS6B01G275200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G275200 chr6B 100.000 5728 0 0 1 5728 497233935 497239662 0.000000e+00 10578.0
1 TraesCS6B01G275200 chr6B 86.885 61 4 3 1700 1759 5885677 5885620 1.330000e-06 65.8
2 TraesCS6B01G275200 chr6A 94.422 3639 128 28 901 4514 464517106 464513518 0.000000e+00 5526.0
3 TraesCS6B01G275200 chr6A 91.743 327 19 4 5044 5363 464509362 464509037 1.130000e-121 448.0
4 TraesCS6B01G275200 chr6A 95.000 160 7 1 4587 4746 464513521 464513363 3.430000e-62 250.0
5 TraesCS6B01G275200 chr6A 92.135 178 6 2 5366 5543 464508990 464508821 1.590000e-60 244.0
6 TraesCS6B01G275200 chr6A 94.521 146 5 1 4779 4921 464513196 464513051 7.470000e-54 222.0
7 TraesCS6B01G275200 chr6A 92.800 125 9 0 4931 5055 464510728 464510604 1.270000e-41 182.0
8 TraesCS6B01G275200 chr6A 92.063 126 9 1 776 901 464517192 464517068 5.900000e-40 176.0
9 TraesCS6B01G275200 chr6A 100.000 30 0 0 1703 1732 583372198 583372227 8.020000e-04 56.5
10 TraesCS6B01G275200 chr6D 94.704 2077 89 7 1656 3723 325729659 325727595 0.000000e+00 3206.0
11 TraesCS6B01G275200 chr6D 96.317 733 18 2 3791 4514 325727450 325726718 0.000000e+00 1195.0
12 TraesCS6B01G275200 chr6D 90.778 900 25 20 776 1671 325730619 325729774 0.000000e+00 1149.0
13 TraesCS6B01G275200 chr6D 90.529 813 37 14 4587 5363 325726721 325725913 0.000000e+00 1038.0
14 TraesCS6B01G275200 chr6D 91.429 175 6 3 5369 5543 325725864 325725699 1.240000e-56 231.0
15 TraesCS6B01G275200 chr6D 95.098 102 5 0 5558 5659 325725315 325725214 1.650000e-35 161.0
16 TraesCS6B01G275200 chr6D 90.476 84 2 2 4511 4588 1551883 1551800 7.850000e-19 106.0
17 TraesCS6B01G275200 chr6D 91.250 80 4 3 4511 4590 370795219 370795143 7.850000e-19 106.0
18 TraesCS6B01G275200 chr2B 96.993 765 19 2 1 761 762203073 762203837 0.000000e+00 1282.0
19 TraesCS6B01G275200 chr2B 90.476 84 5 2 4512 4592 302049231 302049148 2.180000e-19 108.0
20 TraesCS6B01G275200 chr2B 89.535 86 3 2 4511 4590 136175799 136175714 2.820000e-18 104.0
21 TraesCS6B01G275200 chrUn 96.838 759 24 0 1 759 231864040 231864798 0.000000e+00 1269.0
22 TraesCS6B01G275200 chrUn 96.706 759 25 0 1 759 60714656 60713898 0.000000e+00 1264.0
23 TraesCS6B01G275200 chrUn 96.443 759 27 0 1 759 375766098 375766856 0.000000e+00 1253.0
24 TraesCS6B01G275200 chrUn 96.443 759 26 1 1 759 60657928 60657171 0.000000e+00 1251.0
25 TraesCS6B01G275200 chrUn 96.443 759 26 1 1 759 404552828 404553585 0.000000e+00 1251.0
26 TraesCS6B01G275200 chr4A 96.715 761 23 1 1 761 660706072 660706830 0.000000e+00 1266.0
27 TraesCS6B01G275200 chr5B 96.461 763 26 1 1 762 638754589 638753827 0.000000e+00 1258.0
28 TraesCS6B01G275200 chr4B 96.574 759 26 0 1 759 656300502 656299744 0.000000e+00 1258.0
29 TraesCS6B01G275200 chr4B 91.358 81 3 3 4511 4589 498374457 498374535 2.180000e-19 108.0
30 TraesCS6B01G275200 chr4B 88.506 87 6 3 4511 4593 526954604 526954518 1.020000e-17 102.0
31 TraesCS6B01G275200 chr4B 81.301 123 18 4 3635 3754 376157834 376157714 1.700000e-15 95.3
32 TraesCS6B01G275200 chr2A 80.645 155 24 6 3607 3757 386294500 386294348 1.300000e-21 115.0
33 TraesCS6B01G275200 chr2A 88.372 86 8 2 3525 3608 125951289 125951204 1.020000e-17 102.0
34 TraesCS6B01G275200 chr4D 92.405 79 5 1 4511 4589 3571067 3570990 1.690000e-20 111.0
35 TraesCS6B01G275200 chr4D 91.358 81 3 3 4511 4589 402527928 402528006 2.180000e-19 108.0
36 TraesCS6B01G275200 chr4D 80.000 150 22 6 3609 3754 301756453 301756308 2.820000e-18 104.0
37 TraesCS6B01G275200 chr4D 90.244 82 5 3 3527 3605 504090794 504090713 2.820000e-18 104.0
38 TraesCS6B01G275200 chr5D 91.463 82 4 3 3527 3605 122198431 122198512 6.070000e-20 110.0
39 TraesCS6B01G275200 chr5D 89.535 86 5 3 3523 3605 122198517 122198433 7.850000e-19 106.0
40 TraesCS6B01G275200 chr5D 78.344 157 15 7 1703 1856 374468229 374468369 3.680000e-12 84.2
41 TraesCS6B01G275200 chr5D 76.923 169 22 12 1703 1869 374465961 374466114 4.760000e-11 80.5
42 TraesCS6B01G275200 chr3A 90.476 84 5 3 3527 3609 79455059 79454978 2.180000e-19 108.0
43 TraesCS6B01G275200 chr3A 87.671 73 5 4 3684 3754 397141611 397141681 1.320000e-11 82.4
44 TraesCS6B01G275200 chr3B 89.286 84 7 2 3527 3609 114095983 114096065 2.820000e-18 104.0
45 TraesCS6B01G275200 chr1A 91.892 74 6 0 772 845 321292392 321292319 2.820000e-18 104.0
46 TraesCS6B01G275200 chr1A 82.075 106 17 2 3652 3756 21039621 21039725 7.910000e-14 89.8
47 TraesCS6B01G275200 chr1A 100.000 32 0 0 1701 1732 45891856 45891825 6.200000e-05 60.2
48 TraesCS6B01G275200 chr1A 97.143 35 1 0 3720 3754 299633819 299633853 6.200000e-05 60.2
49 TraesCS6B01G275200 chr1D 88.372 86 7 2 3527 3609 78965826 78965911 3.650000e-17 100.0
50 TraesCS6B01G275200 chr1D 83.019 106 16 2 3652 3756 19263639 19263743 1.700000e-15 95.3
51 TraesCS6B01G275200 chr7B 87.500 88 8 3 4511 4597 736755775 736755860 1.310000e-16 99.0
52 TraesCS6B01G275200 chr3D 88.571 70 4 4 3687 3754 324310931 324310864 1.320000e-11 82.4
53 TraesCS6B01G275200 chr7A 86.765 68 8 1 5056 5123 539857094 539857028 2.210000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G275200 chr6B 497233935 497239662 5727 False 10578.000000 10578 100.000000 1 5728 1 chr6B.!!$F1 5727
1 TraesCS6B01G275200 chr6A 464508821 464517192 8371 True 1006.857143 5526 93.240571 776 5543 7 chr6A.!!$R1 4767
2 TraesCS6B01G275200 chr6D 325725214 325730619 5405 True 1163.333333 3206 93.142500 776 5659 6 chr6D.!!$R3 4883
3 TraesCS6B01G275200 chr2B 762203073 762203837 764 False 1282.000000 1282 96.993000 1 761 1 chr2B.!!$F1 760
4 TraesCS6B01G275200 chrUn 231864040 231864798 758 False 1269.000000 1269 96.838000 1 759 1 chrUn.!!$F1 758
5 TraesCS6B01G275200 chrUn 60713898 60714656 758 True 1264.000000 1264 96.706000 1 759 1 chrUn.!!$R2 758
6 TraesCS6B01G275200 chrUn 375766098 375766856 758 False 1253.000000 1253 96.443000 1 759 1 chrUn.!!$F2 758
7 TraesCS6B01G275200 chrUn 60657171 60657928 757 True 1251.000000 1251 96.443000 1 759 1 chrUn.!!$R1 758
8 TraesCS6B01G275200 chrUn 404552828 404553585 757 False 1251.000000 1251 96.443000 1 759 1 chrUn.!!$F3 758
9 TraesCS6B01G275200 chr4A 660706072 660706830 758 False 1266.000000 1266 96.715000 1 761 1 chr4A.!!$F1 760
10 TraesCS6B01G275200 chr5B 638753827 638754589 762 True 1258.000000 1258 96.461000 1 762 1 chr5B.!!$R1 761
11 TraesCS6B01G275200 chr4B 656299744 656300502 758 True 1258.000000 1258 96.574000 1 759 1 chr4B.!!$R3 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 901 0.099082 GCGTCAACTAGGAGGTCTCG 59.901 60.000 0.00 0.00 0.00 4.04 F
1261 1297 0.181114 TCCCATCTGATTTGGAGGCG 59.819 55.000 0.00 0.00 36.26 5.52 F
1264 1300 0.379669 CATCTGATTTGGAGGCGCAC 59.620 55.000 10.83 1.82 0.00 5.34 F
1762 1931 0.750850 GCTTGAGCCTCGTGGGTATA 59.249 55.000 8.42 0.00 45.24 1.47 F
3300 3474 1.274167 CAAATGGCAGCTGTGGTCAAT 59.726 47.619 16.64 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 2143 0.988145 CTTGCCCTATGAGGTCCCCA 60.988 60.000 0.00 0.0 31.93 4.96 R
3201 3375 0.391263 GAAGACCCCATGTGTCGTCC 60.391 60.000 13.81 3.3 35.89 4.79 R
3300 3474 2.912771 TCTCCAAAGCACGAACAAGAA 58.087 42.857 0.00 0.0 0.00 2.52 R
3452 3626 0.319405 AACGGGGGAAGTACGTTCAG 59.681 55.000 0.00 0.0 46.50 3.02 R
5330 9304 0.028505 CGATCAATGGAGCTTTGGCG 59.971 55.000 0.00 0.0 44.37 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
444 448 6.797995 TCAAAACTCGTTTGTGTTCTGTAAAC 59.202 34.615 0.00 0.00 45.83 2.01
542 546 9.548631 TTCCTTAGATATGATAGGTCTAAAGGG 57.451 37.037 0.00 0.00 34.93 3.95
762 769 1.069935 GGCAGATAGGAAGTCCCGC 59.930 63.158 0.00 0.00 40.87 6.13
763 770 1.403687 GGCAGATAGGAAGTCCCGCT 61.404 60.000 0.00 0.00 40.87 5.52
764 771 1.329256 GCAGATAGGAAGTCCCGCTA 58.671 55.000 0.00 0.00 40.87 4.26
765 772 1.000052 GCAGATAGGAAGTCCCGCTAC 60.000 57.143 0.00 0.00 40.87 3.58
766 773 2.307768 CAGATAGGAAGTCCCGCTACA 58.692 52.381 0.00 0.00 40.87 2.74
767 774 2.693591 CAGATAGGAAGTCCCGCTACAA 59.306 50.000 0.00 0.00 40.87 2.41
768 775 3.132289 CAGATAGGAAGTCCCGCTACAAA 59.868 47.826 0.00 0.00 40.87 2.83
769 776 3.385111 AGATAGGAAGTCCCGCTACAAAG 59.615 47.826 0.00 0.00 40.87 2.77
770 777 1.640917 AGGAAGTCCCGCTACAAAGA 58.359 50.000 0.00 0.00 40.87 2.52
771 778 1.550976 AGGAAGTCCCGCTACAAAGAG 59.449 52.381 0.00 0.00 40.87 2.85
772 779 1.360820 GAAGTCCCGCTACAAAGAGC 58.639 55.000 0.00 0.00 39.20 4.09
773 780 0.977395 AAGTCCCGCTACAAAGAGCT 59.023 50.000 0.00 0.00 40.51 4.09
774 781 0.247736 AGTCCCGCTACAAAGAGCTG 59.752 55.000 0.00 0.00 40.51 4.24
861 897 1.546476 CTCAAGCGTCAACTAGGAGGT 59.454 52.381 0.00 0.00 0.00 3.85
862 898 1.544691 TCAAGCGTCAACTAGGAGGTC 59.455 52.381 0.00 0.00 0.00 3.85
863 899 1.546476 CAAGCGTCAACTAGGAGGTCT 59.454 52.381 0.00 0.00 0.00 3.85
864 900 1.465794 AGCGTCAACTAGGAGGTCTC 58.534 55.000 0.00 0.00 0.00 3.36
865 901 0.099082 GCGTCAACTAGGAGGTCTCG 59.901 60.000 0.00 0.00 0.00 4.04
866 902 1.735386 CGTCAACTAGGAGGTCTCGA 58.265 55.000 0.00 0.00 0.00 4.04
867 903 2.290464 CGTCAACTAGGAGGTCTCGAT 58.710 52.381 0.00 0.00 0.00 3.59
868 904 2.683867 CGTCAACTAGGAGGTCTCGATT 59.316 50.000 0.00 0.00 0.00 3.34
869 905 3.128938 CGTCAACTAGGAGGTCTCGATTT 59.871 47.826 0.00 0.00 0.00 2.17
870 906 4.334759 CGTCAACTAGGAGGTCTCGATTTA 59.665 45.833 0.00 0.00 0.00 1.40
871 907 5.504337 CGTCAACTAGGAGGTCTCGATTTAG 60.504 48.000 0.00 0.00 0.00 1.85
872 908 5.357596 GTCAACTAGGAGGTCTCGATTTAGT 59.642 44.000 0.00 0.00 0.00 2.24
873 909 5.950549 TCAACTAGGAGGTCTCGATTTAGTT 59.049 40.000 0.00 8.57 0.00 2.24
874 910 6.095160 TCAACTAGGAGGTCTCGATTTAGTTC 59.905 42.308 0.00 0.00 0.00 3.01
875 911 5.757988 ACTAGGAGGTCTCGATTTAGTTCT 58.242 41.667 0.00 0.00 0.00 3.01
876 912 5.824097 ACTAGGAGGTCTCGATTTAGTTCTC 59.176 44.000 0.00 0.00 0.00 2.87
877 913 4.601084 AGGAGGTCTCGATTTAGTTCTCA 58.399 43.478 0.00 0.00 0.00 3.27
878 914 5.017490 AGGAGGTCTCGATTTAGTTCTCAA 58.983 41.667 0.00 0.00 0.00 3.02
879 915 5.480772 AGGAGGTCTCGATTTAGTTCTCAAA 59.519 40.000 0.00 0.00 0.00 2.69
880 916 6.014499 AGGAGGTCTCGATTTAGTTCTCAAAA 60.014 38.462 0.00 0.00 0.00 2.44
881 917 6.649557 GGAGGTCTCGATTTAGTTCTCAAAAA 59.350 38.462 0.00 0.00 0.00 1.94
907 943 2.823154 AGGAGGTCTCGTTTTCTCTCTG 59.177 50.000 0.00 0.00 0.00 3.35
916 952 4.647611 TCGTTTTCTCTCTGTCTCTCTCT 58.352 43.478 0.00 0.00 0.00 3.10
917 953 4.693566 TCGTTTTCTCTCTGTCTCTCTCTC 59.306 45.833 0.00 0.00 0.00 3.20
1173 1209 1.445582 CGCCCACGTCAAGACCTAC 60.446 63.158 0.00 0.00 33.53 3.18
1257 1293 3.053395 CCCTTCTTCCCATCTGATTTGGA 60.053 47.826 0.00 0.70 36.26 3.53
1261 1297 0.181114 TCCCATCTGATTTGGAGGCG 59.819 55.000 0.00 0.00 36.26 5.52
1262 1298 1.450531 CCCATCTGATTTGGAGGCGC 61.451 60.000 0.00 0.00 36.26 6.53
1263 1299 0.749091 CCATCTGATTTGGAGGCGCA 60.749 55.000 10.83 0.00 36.26 6.09
1264 1300 0.379669 CATCTGATTTGGAGGCGCAC 59.620 55.000 10.83 1.82 0.00 5.34
1265 1301 1.091771 ATCTGATTTGGAGGCGCACG 61.092 55.000 10.83 0.00 0.00 5.34
1266 1302 2.745884 TGATTTGGAGGCGCACGG 60.746 61.111 10.83 0.00 0.00 4.94
1267 1303 4.179579 GATTTGGAGGCGCACGGC 62.180 66.667 10.83 8.74 42.51 5.68
1376 1412 1.079127 CTCCGGCAAAGTCATCCGT 60.079 57.895 0.00 0.00 41.46 4.69
1411 1447 4.433615 CACAACAGCGAGGTAATGTATCT 58.566 43.478 0.00 0.00 0.00 1.98
1433 1469 4.665451 TGCCATCGATTGATTGGGATATT 58.335 39.130 0.00 0.00 30.49 1.28
1436 1472 5.047802 GCCATCGATTGATTGGGATATTGTT 60.048 40.000 0.00 0.00 30.49 2.83
1440 1476 8.733458 CATCGATTGATTGGGATATTGTTATGT 58.267 33.333 0.00 0.00 30.49 2.29
1442 1478 7.936301 TCGATTGATTGGGATATTGTTATGTGA 59.064 33.333 0.00 0.00 0.00 3.58
1444 1480 9.850628 GATTGATTGGGATATTGTTATGTGATG 57.149 33.333 0.00 0.00 0.00 3.07
1504 1541 9.781834 TGTTGTTTTCAGTTTTCACTTATACAG 57.218 29.630 0.00 0.00 0.00 2.74
1533 1570 2.017049 AGCAAATTCGGTGTCATAGGC 58.983 47.619 0.00 0.00 0.00 3.93
1551 1588 2.911484 CGCAAGCTGCTGGAAAGCA 61.911 57.895 8.57 0.00 42.25 3.91
1628 1667 8.808529 GTGTGAAGTAGTAGCAATGTTATAGTG 58.191 37.037 0.00 0.00 0.00 2.74
1629 1668 8.745590 TGTGAAGTAGTAGCAATGTTATAGTGA 58.254 33.333 0.00 0.00 0.00 3.41
1630 1669 9.582431 GTGAAGTAGTAGCAATGTTATAGTGAA 57.418 33.333 0.00 0.00 0.00 3.18
1708 1877 5.122396 GCAGACCACTGTAATTTGTAGAAGG 59.878 44.000 0.00 0.00 45.04 3.46
1753 1922 4.708726 ATTGTTGTATTGCTTGAGCCTC 57.291 40.909 0.00 0.00 41.18 4.70
1762 1931 0.750850 GCTTGAGCCTCGTGGGTATA 59.249 55.000 8.42 0.00 45.24 1.47
1763 1932 1.344763 GCTTGAGCCTCGTGGGTATAT 59.655 52.381 8.42 0.00 45.24 0.86
1764 1933 2.561419 GCTTGAGCCTCGTGGGTATATA 59.439 50.000 8.42 0.00 45.24 0.86
1765 1934 3.195825 GCTTGAGCCTCGTGGGTATATAT 59.804 47.826 8.42 0.00 45.24 0.86
1766 1935 4.401519 GCTTGAGCCTCGTGGGTATATATA 59.598 45.833 8.42 0.00 45.24 0.86
1767 1936 5.069251 GCTTGAGCCTCGTGGGTATATATAT 59.931 44.000 8.42 0.00 45.24 0.86
1768 1937 6.264744 GCTTGAGCCTCGTGGGTATATATATA 59.735 42.308 8.42 0.00 45.24 0.86
1769 1938 7.039644 GCTTGAGCCTCGTGGGTATATATATAT 60.040 40.741 8.42 10.10 45.24 0.86
1770 1939 9.516546 CTTGAGCCTCGTGGGTATATATATATA 57.483 37.037 8.42 8.16 45.24 0.86
1838 2008 9.606631 GGTAGAAATAAATCCTATGCTATCCTG 57.393 37.037 0.00 0.00 0.00 3.86
1859 2029 5.347907 CCTGTGTTTCCTAACTAATCACGAC 59.652 44.000 0.00 0.00 35.24 4.34
1860 2030 4.919168 TGTGTTTCCTAACTAATCACGACG 59.081 41.667 0.00 0.00 35.24 5.12
1879 2049 4.549599 CGACGCTCAACATAATTCAACAAC 59.450 41.667 0.00 0.00 0.00 3.32
1919 2089 6.542821 TCACTATGATGTTGGGAACTTTTCT 58.457 36.000 0.00 0.00 0.00 2.52
1949 2119 2.435059 GGGCGTCTTCACCTCTGC 60.435 66.667 0.00 0.00 0.00 4.26
1956 2126 3.849911 CGTCTTCACCTCTGCTCATTTA 58.150 45.455 0.00 0.00 0.00 1.40
1973 2143 7.279981 TGCTCATTTAACGATTGCTACTGTAAT 59.720 33.333 0.00 0.00 0.00 1.89
1976 2146 6.671614 TTTAACGATTGCTACTGTAATGGG 57.328 37.500 0.00 0.00 30.81 4.00
2047 2218 4.049186 CTGCACATCGTGGTATTACTACC 58.951 47.826 2.33 2.33 46.65 3.18
2101 2272 4.943705 CAGTGCACCAATACCATACTTCTT 59.056 41.667 14.63 0.00 0.00 2.52
2107 2278 7.831690 TGCACCAATACCATACTTCTTTAATGA 59.168 33.333 0.00 0.00 0.00 2.57
2157 2328 9.019764 GTTCAATTTACATGCATTACCATACAC 57.980 33.333 0.00 0.00 0.00 2.90
2189 2360 6.942005 TGTGATTATTATTAGGCCCATCAGTG 59.058 38.462 0.00 0.00 0.00 3.66
2205 2376 4.927267 TCAGTGATACCCAAAACCTGAT 57.073 40.909 0.00 0.00 0.00 2.90
2210 2381 7.893302 TCAGTGATACCCAAAACCTGATAAAAT 59.107 33.333 0.00 0.00 0.00 1.82
2283 2455 5.192176 AGATTTCTCCATTCTGCTTCCTTC 58.808 41.667 0.00 0.00 0.00 3.46
2442 2614 6.808704 ACATATGGATTCGTCAATCATAGTCG 59.191 38.462 7.80 0.00 40.41 4.18
2446 2620 5.529800 TGGATTCGTCAATCATAGTCGTAGA 59.470 40.000 0.00 0.00 40.41 2.59
2593 2767 3.395639 TGGTACTGTCCGAACATTTGAC 58.604 45.455 0.00 0.00 34.13 3.18
2605 2779 2.170166 ACATTTGACATTCGCATGGGT 58.830 42.857 9.86 0.00 34.27 4.51
2645 2819 4.823442 TGTTCCGTACTCAAGTCTCAACTA 59.177 41.667 0.00 0.00 33.48 2.24
2651 2825 6.866770 CCGTACTCAAGTCTCAACTAATTTGA 59.133 38.462 0.00 0.00 42.26 2.69
2711 2885 5.682943 TTAAACAAGGAAGTGTTGATCGG 57.317 39.130 0.00 0.00 40.86 4.18
2940 3114 3.486383 TGACAAAAAGTTGCTAGGGAGG 58.514 45.455 0.00 0.00 38.39 4.30
2941 3115 2.820197 GACAAAAAGTTGCTAGGGAGGG 59.180 50.000 0.00 0.00 38.39 4.30
2970 3144 7.564793 TCTATTTAGCACTCAGGAGCAATTAA 58.435 34.615 0.00 0.00 0.00 1.40
2971 3145 8.213679 TCTATTTAGCACTCAGGAGCAATTAAT 58.786 33.333 0.00 0.00 0.00 1.40
3003 3177 3.806949 ATTTGAAGCAGTTAGACCCCA 57.193 42.857 0.00 0.00 0.00 4.96
3004 3178 2.859165 TTGAAGCAGTTAGACCCCAG 57.141 50.000 0.00 0.00 0.00 4.45
3007 3181 3.719871 TGAAGCAGTTAGACCCCAGATA 58.280 45.455 0.00 0.00 0.00 1.98
3086 3260 5.811190 TGGCCAGTAGTTATGTAACATGTT 58.189 37.500 16.68 16.68 38.62 2.71
3091 3265 8.512138 GCCAGTAGTTATGTAACATGTTCTTTT 58.488 33.333 15.85 1.55 38.62 2.27
3122 3296 7.935755 CCTCATCATAGGAATTTATGTCACACT 59.064 37.037 0.00 0.00 39.15 3.55
3130 3304 8.553459 AGGAATTTATGTCACACTTGAACTAG 57.447 34.615 0.00 0.00 31.90 2.57
3142 3316 5.364157 ACACTTGAACTAGAAACAGAGTCCT 59.636 40.000 0.00 0.00 0.00 3.85
3154 3328 3.037431 CAGAGTCCTGTCCTTCACTTG 57.963 52.381 0.00 0.00 35.70 3.16
3156 3330 3.260380 CAGAGTCCTGTCCTTCACTTGAT 59.740 47.826 0.00 0.00 35.70 2.57
3159 3333 4.392940 AGTCCTGTCCTTCACTTGATTTG 58.607 43.478 0.00 0.00 0.00 2.32
3178 3352 4.371855 TTGACTTGACTGGATAGCTACG 57.628 45.455 0.00 0.00 0.00 3.51
3179 3353 3.617284 TGACTTGACTGGATAGCTACGA 58.383 45.455 0.00 0.00 0.00 3.43
3201 3375 5.910166 CGAATCTATTTCCTGTACTGAGTCG 59.090 44.000 0.60 0.00 35.10 4.18
3300 3474 1.274167 CAAATGGCAGCTGTGGTCAAT 59.726 47.619 16.64 0.00 0.00 2.57
3326 3500 3.882888 TGTTCGTGCTTTGGAGATTCTTT 59.117 39.130 0.00 0.00 0.00 2.52
3355 3529 4.644234 TGAACCTGCTGTTTCATCTTCAAA 59.356 37.500 0.00 0.00 37.29 2.69
3364 3538 6.581542 GCTGTTTCATCTTCAAATGTCTCAAG 59.418 38.462 0.00 0.00 0.00 3.02
3376 3550 8.114331 TCAAATGTCTCAAGCAATAGTTTGAT 57.886 30.769 0.00 0.00 42.82 2.57
3406 3580 1.423541 TGCCTTCTTGGAAGTTAGCCA 59.576 47.619 6.55 0.00 38.35 4.75
3411 3585 3.402628 TCTTGGAAGTTAGCCAGTCAC 57.597 47.619 0.00 0.00 36.64 3.67
3567 3741 6.925610 ATATAAGATCGTTTTGCAAGCAGA 57.074 33.333 0.00 0.57 0.00 4.26
3569 3743 3.482722 AGATCGTTTTGCAAGCAGATG 57.517 42.857 14.48 3.23 0.00 2.90
3570 3744 1.916000 GATCGTTTTGCAAGCAGATGC 59.084 47.619 14.48 0.00 46.58 3.91
3602 3780 7.796054 ACGATCTTATATTATTGGATGGAGGG 58.204 38.462 0.00 0.00 0.00 4.30
3605 3783 7.200434 TCTTATATTATTGGATGGAGGGAGC 57.800 40.000 0.00 0.00 0.00 4.70
3626 3804 6.204495 GGAGCAGTTTCCTTAGATTCATCATC 59.796 42.308 0.00 0.00 34.27 2.92
3627 3805 5.757320 AGCAGTTTCCTTAGATTCATCATCG 59.243 40.000 0.00 0.00 36.93 3.84
3630 3808 7.625553 CAGTTTCCTTAGATTCATCATCGAAC 58.374 38.462 0.00 0.00 36.93 3.95
3725 3903 7.510549 TGAGAAGTTTGAAATAGGACAAAGG 57.489 36.000 0.00 0.00 36.81 3.11
3787 3965 5.064198 GGTATAGTTGTGCATGAGCGTTTTA 59.936 40.000 0.00 0.00 46.23 1.52
3788 3966 3.268013 AGTTGTGCATGAGCGTTTTAC 57.732 42.857 0.00 0.00 46.23 2.01
3789 3967 2.616376 AGTTGTGCATGAGCGTTTTACA 59.384 40.909 0.00 0.00 46.23 2.41
3796 4051 3.120199 GCATGAGCGTTTTACATCACAGT 60.120 43.478 0.00 0.00 0.00 3.55
3866 4121 6.995686 TGACTTTCTTGTGCTTTTGGTATCTA 59.004 34.615 0.00 0.00 0.00 1.98
3871 4126 7.144722 TCTTGTGCTTTTGGTATCTACATTG 57.855 36.000 0.00 0.00 0.00 2.82
3883 4138 9.959749 TTGGTATCTACATTGTTTCTGTTTTTC 57.040 29.630 0.00 0.00 0.00 2.29
3960 4223 0.965866 AGCAAGTCGACGAGGGATCA 60.966 55.000 10.46 0.00 0.00 2.92
3980 4243 5.611796 TCACAAATCTCTGTTGTACATGC 57.388 39.130 0.00 0.00 37.09 4.06
4061 4324 3.118482 TGTTGCACCATTTTGTTGTGGAT 60.118 39.130 0.00 0.00 38.86 3.41
4093 4356 4.301072 TGACCAAGTTCCAAATAGAGGG 57.699 45.455 0.00 0.00 0.00 4.30
4142 4405 5.794687 TGCATGACTTTTGGTAGTAATCG 57.205 39.130 0.00 0.00 0.00 3.34
4364 4628 1.873591 GCATTTGTTATCGGCGGATCT 59.126 47.619 10.40 0.00 34.00 2.75
4406 4670 0.462047 GGGAGTTAGTGGATGCACCG 60.462 60.000 14.38 0.00 42.61 4.94
4514 4778 9.933723 TTACTGGTTAAGTATTGTTTCCTACTC 57.066 33.333 0.00 0.00 41.10 2.59
4515 4779 7.392418 ACTGGTTAAGTATTGTTTCCTACTCC 58.608 38.462 0.00 0.00 37.36 3.85
4516 4780 6.714278 TGGTTAAGTATTGTTTCCTACTCCC 58.286 40.000 0.00 0.00 0.00 4.30
4517 4781 6.502863 TGGTTAAGTATTGTTTCCTACTCCCT 59.497 38.462 0.00 0.00 0.00 4.20
4518 4782 7.046652 GGTTAAGTATTGTTTCCTACTCCCTC 58.953 42.308 0.00 0.00 0.00 4.30
4519 4783 5.695424 AAGTATTGTTTCCTACTCCCTCC 57.305 43.478 0.00 0.00 0.00 4.30
4520 4784 3.705072 AGTATTGTTTCCTACTCCCTCCG 59.295 47.826 0.00 0.00 0.00 4.63
4521 4785 2.019807 TTGTTTCCTACTCCCTCCGT 57.980 50.000 0.00 0.00 0.00 4.69
4522 4786 2.905415 TGTTTCCTACTCCCTCCGTA 57.095 50.000 0.00 0.00 0.00 4.02
4523 4787 3.173953 TGTTTCCTACTCCCTCCGTAA 57.826 47.619 0.00 0.00 0.00 3.18
4524 4788 3.509442 TGTTTCCTACTCCCTCCGTAAA 58.491 45.455 0.00 0.00 0.00 2.01
4525 4789 3.512724 TGTTTCCTACTCCCTCCGTAAAG 59.487 47.826 0.00 0.00 0.00 1.85
4526 4790 3.744940 TTCCTACTCCCTCCGTAAAGA 57.255 47.619 0.00 0.00 0.00 2.52
4527 4791 3.744940 TCCTACTCCCTCCGTAAAGAA 57.255 47.619 0.00 0.00 0.00 2.52
4528 4792 4.051661 TCCTACTCCCTCCGTAAAGAAA 57.948 45.455 0.00 0.00 0.00 2.52
4529 4793 4.617593 TCCTACTCCCTCCGTAAAGAAAT 58.382 43.478 0.00 0.00 0.00 2.17
4530 4794 5.769835 TCCTACTCCCTCCGTAAAGAAATA 58.230 41.667 0.00 0.00 0.00 1.40
4531 4795 5.595952 TCCTACTCCCTCCGTAAAGAAATAC 59.404 44.000 0.00 0.00 0.00 1.89
4532 4796 5.361857 CCTACTCCCTCCGTAAAGAAATACA 59.638 44.000 0.00 0.00 0.00 2.29
4533 4797 5.750352 ACTCCCTCCGTAAAGAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
4534 4798 5.731591 ACTCCCTCCGTAAAGAAATACAAG 58.268 41.667 0.00 0.00 0.00 3.16
4535 4799 5.482878 ACTCCCTCCGTAAAGAAATACAAGA 59.517 40.000 0.00 0.00 0.00 3.02
4536 4800 5.974108 TCCCTCCGTAAAGAAATACAAGAG 58.026 41.667 0.00 0.00 0.00 2.85
4537 4801 5.105064 TCCCTCCGTAAAGAAATACAAGAGG 60.105 44.000 11.07 11.07 41.38 3.69
4538 4802 5.338137 CCCTCCGTAAAGAAATACAAGAGGT 60.338 44.000 14.50 0.00 40.77 3.85
4539 4803 5.811100 CCTCCGTAAAGAAATACAAGAGGTC 59.189 44.000 10.30 0.00 39.20 3.85
4540 4804 6.349243 TCCGTAAAGAAATACAAGAGGTCA 57.651 37.500 0.00 0.00 0.00 4.02
4541 4805 6.161381 TCCGTAAAGAAATACAAGAGGTCAC 58.839 40.000 0.00 0.00 0.00 3.67
4542 4806 6.014840 TCCGTAAAGAAATACAAGAGGTCACT 60.015 38.462 0.00 0.00 0.00 3.41
4543 4807 7.177216 TCCGTAAAGAAATACAAGAGGTCACTA 59.823 37.037 0.00 0.00 0.00 2.74
4544 4808 7.816031 CCGTAAAGAAATACAAGAGGTCACTAA 59.184 37.037 0.00 0.00 0.00 2.24
4545 4809 9.199982 CGTAAAGAAATACAAGAGGTCACTAAA 57.800 33.333 0.00 0.00 0.00 1.85
4582 4846 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
4583 4847 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
4584 4848 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
4585 4849 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
4586 4850 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
4599 4863 6.936968 ACAGAGGGAGTACTTTAGTTTGAT 57.063 37.500 0.00 0.00 0.00 2.57
4660 4924 2.740055 GCAGGTCACCAGCGTCAG 60.740 66.667 0.00 0.00 0.00 3.51
4691 4955 2.653726 ACAAAGACCTGCATGTTGACA 58.346 42.857 0.00 0.00 0.00 3.58
4734 4998 3.056107 TCGTGTTTGGACCTGAAGATAGG 60.056 47.826 0.00 0.00 43.71 2.57
4764 5047 1.281899 GCGCCTATGACAGTGTTCTC 58.718 55.000 0.00 0.00 0.00 2.87
4833 5234 3.329386 ACTACATGTGACATGCTGACAC 58.671 45.455 24.32 10.18 41.97 3.67
4843 5244 1.991264 CATGCTGACACGAGAACAGAG 59.009 52.381 13.15 0.00 34.07 3.35
4849 5250 2.688446 TGACACGAGAACAGAGTCAAGT 59.312 45.455 0.00 0.00 36.39 3.16
4957 7671 7.798710 ACATGGATATGTAGTAGTATGCCTT 57.201 36.000 0.00 0.00 45.45 4.35
4961 7675 6.014584 TGGATATGTAGTAGTATGCCTTGTGG 60.015 42.308 0.00 0.00 0.00 4.17
5039 7753 3.673338 GGTGCGAGGTTTTTAATCTTTGC 59.327 43.478 0.00 0.00 0.00 3.68
5081 9048 4.445452 TGAGAAAGATCCAGCAAATTGC 57.555 40.909 10.41 10.41 45.46 3.56
5107 9077 5.695816 GGCTTTGATTGATGTTTAGCACAAA 59.304 36.000 0.00 0.00 39.50 2.83
5137 9107 6.294010 GGGAAGATCAAGGGCGAAATATAAAC 60.294 42.308 0.00 0.00 0.00 2.01
5160 9130 6.659776 ACGAGCTGAAAATGAAGAAAACTAC 58.340 36.000 0.00 0.00 0.00 2.73
5200 9170 1.373570 GGCTGCAAGACATGGTAGTC 58.626 55.000 0.50 0.00 46.27 2.59
5217 9187 5.598830 TGGTAGTCATCCTAAGATCAAGGAC 59.401 44.000 16.66 7.41 45.78 3.85
5223 9193 6.594159 GTCATCCTAAGATCAAGGACGAAAAA 59.406 38.462 16.66 0.00 45.78 1.94
5225 9195 5.488341 TCCTAAGATCAAGGACGAAAAAGG 58.512 41.667 11.72 0.00 38.24 3.11
5230 9200 3.849563 TCAAGGACGAAAAAGGAAGGA 57.150 42.857 0.00 0.00 0.00 3.36
5246 9218 8.492673 AAAGGAAGGAACTGAAAATGAAAAAC 57.507 30.769 0.00 0.00 40.86 2.43
5330 9304 2.643551 TGTATTTTGCTCCAGCTAGGC 58.356 47.619 0.00 0.00 42.66 3.93
5359 9333 3.200483 CTCCATTGATCGTCTGATTGCA 58.800 45.455 0.00 0.00 34.09 4.08
5360 9334 3.200483 TCCATTGATCGTCTGATTGCAG 58.800 45.455 0.00 0.00 43.67 4.41
5387 9404 1.012841 GCTTCCTGCCAAATCTCTCG 58.987 55.000 0.00 0.00 35.15 4.04
5390 9407 3.861840 CTTCCTGCCAAATCTCTCGTAA 58.138 45.455 0.00 0.00 0.00 3.18
5398 9415 2.853731 AATCTCTCGTAAGACCAGCG 57.146 50.000 0.00 0.00 45.01 5.18
5414 9431 2.817258 CCAGCGTGGTCAAGGATTTTTA 59.183 45.455 0.00 0.00 31.35 1.52
5478 9495 1.348538 CGTAGCGATGTCCGTGCAAA 61.349 55.000 0.00 0.00 41.15 3.68
5492 9509 2.477357 CGTGCAAAAGCTCATCATCTGG 60.477 50.000 0.00 0.00 0.00 3.86
5495 9512 2.100916 GCAAAAGCTCATCATCTGGCAT 59.899 45.455 0.00 0.00 0.00 4.40
5496 9513 3.795826 GCAAAAGCTCATCATCTGGCATC 60.796 47.826 0.00 0.00 0.00 3.91
5497 9514 3.579534 AAAGCTCATCATCTGGCATCT 57.420 42.857 0.00 0.00 0.00 2.90
5498 9515 2.552599 AGCTCATCATCTGGCATCTG 57.447 50.000 0.00 0.00 0.00 2.90
5499 9516 0.875728 GCTCATCATCTGGCATCTGC 59.124 55.000 0.00 0.00 41.14 4.26
5518 9535 3.329889 ATGAAGCCGGTCCCAGCA 61.330 61.111 1.90 0.00 0.00 4.41
5554 9571 2.749839 GGCATGCCCAACGCTACA 60.750 61.111 27.24 0.00 38.78 2.74
5556 9573 1.137404 GCATGCCCAACGCTACAAG 59.863 57.895 6.36 0.00 38.78 3.16
5569 9955 0.970937 CTACAAGCTGGAGACGGGGA 60.971 60.000 0.00 0.00 37.13 4.81
5610 9996 1.248785 CGTCCTCCGGGTTTCTGAGA 61.249 60.000 0.00 0.00 0.00 3.27
5659 10045 3.736100 CATGGCGTTGCAGGCGAA 61.736 61.111 15.36 3.24 39.82 4.70
5660 10046 3.434319 ATGGCGTTGCAGGCGAAG 61.434 61.111 15.36 0.00 39.82 3.79
5678 10064 5.316488 CGAAGCGATGGTGAAATAGTAAG 57.684 43.478 0.00 0.00 0.00 2.34
5679 10065 4.209288 CGAAGCGATGGTGAAATAGTAAGG 59.791 45.833 0.00 0.00 0.00 2.69
5680 10066 4.073293 AGCGATGGTGAAATAGTAAGGG 57.927 45.455 0.00 0.00 0.00 3.95
5681 10067 3.454812 AGCGATGGTGAAATAGTAAGGGT 59.545 43.478 0.00 0.00 0.00 4.34
5682 10068 3.560068 GCGATGGTGAAATAGTAAGGGTG 59.440 47.826 0.00 0.00 0.00 4.61
5683 10069 4.766375 CGATGGTGAAATAGTAAGGGTGT 58.234 43.478 0.00 0.00 0.00 4.16
5684 10070 5.183228 CGATGGTGAAATAGTAAGGGTGTT 58.817 41.667 0.00 0.00 0.00 3.32
5685 10071 5.646360 CGATGGTGAAATAGTAAGGGTGTTT 59.354 40.000 0.00 0.00 0.00 2.83
5686 10072 6.150474 CGATGGTGAAATAGTAAGGGTGTTTT 59.850 38.462 0.00 0.00 0.00 2.43
5687 10073 6.642707 TGGTGAAATAGTAAGGGTGTTTTG 57.357 37.500 0.00 0.00 0.00 2.44
5688 10074 6.130569 TGGTGAAATAGTAAGGGTGTTTTGT 58.869 36.000 0.00 0.00 0.00 2.83
5689 10075 6.039941 TGGTGAAATAGTAAGGGTGTTTTGTG 59.960 38.462 0.00 0.00 0.00 3.33
5690 10076 6.040054 GGTGAAATAGTAAGGGTGTTTTGTGT 59.960 38.462 0.00 0.00 0.00 3.72
5691 10077 7.229106 GGTGAAATAGTAAGGGTGTTTTGTGTA 59.771 37.037 0.00 0.00 0.00 2.90
5692 10078 8.287503 GTGAAATAGTAAGGGTGTTTTGTGTAG 58.712 37.037 0.00 0.00 0.00 2.74
5693 10079 6.812879 AATAGTAAGGGTGTTTTGTGTAGC 57.187 37.500 0.00 0.00 0.00 3.58
5694 10080 4.159244 AGTAAGGGTGTTTTGTGTAGCA 57.841 40.909 0.00 0.00 0.00 3.49
5695 10081 3.881089 AGTAAGGGTGTTTTGTGTAGCAC 59.119 43.478 0.00 0.00 34.56 4.40
5696 10082 2.729028 AGGGTGTTTTGTGTAGCACT 57.271 45.000 0.90 0.00 35.11 4.40
5697 10083 3.849563 AGGGTGTTTTGTGTAGCACTA 57.150 42.857 0.90 0.00 35.11 2.74
5698 10084 4.159244 AGGGTGTTTTGTGTAGCACTAA 57.841 40.909 0.90 0.00 35.11 2.24
5699 10085 4.134563 AGGGTGTTTTGTGTAGCACTAAG 58.865 43.478 0.90 0.00 35.11 2.18
5700 10086 4.131596 GGGTGTTTTGTGTAGCACTAAGA 58.868 43.478 0.90 0.00 35.11 2.10
5701 10087 4.760204 GGGTGTTTTGTGTAGCACTAAGAT 59.240 41.667 0.90 0.00 35.11 2.40
5702 10088 5.935789 GGGTGTTTTGTGTAGCACTAAGATA 59.064 40.000 0.90 0.00 35.11 1.98
5703 10089 6.598064 GGGTGTTTTGTGTAGCACTAAGATAT 59.402 38.462 0.90 0.00 35.11 1.63
5704 10090 7.120726 GGGTGTTTTGTGTAGCACTAAGATATT 59.879 37.037 0.90 0.00 35.11 1.28
5705 10091 8.175716 GGTGTTTTGTGTAGCACTAAGATATTC 58.824 37.037 0.90 0.00 35.11 1.75
5706 10092 8.717821 GTGTTTTGTGTAGCACTAAGATATTCA 58.282 33.333 0.90 0.00 35.11 2.57
5707 10093 8.935844 TGTTTTGTGTAGCACTAAGATATTCAG 58.064 33.333 0.90 0.00 35.11 3.02
5708 10094 8.936864 GTTTTGTGTAGCACTAAGATATTCAGT 58.063 33.333 0.90 0.00 35.11 3.41
5709 10095 8.703604 TTTGTGTAGCACTAAGATATTCAGTC 57.296 34.615 0.90 0.00 35.11 3.51
5710 10096 7.404671 TGTGTAGCACTAAGATATTCAGTCA 57.595 36.000 0.90 0.00 35.11 3.41
5711 10097 7.836842 TGTGTAGCACTAAGATATTCAGTCAA 58.163 34.615 0.90 0.00 35.11 3.18
5712 10098 7.759886 TGTGTAGCACTAAGATATTCAGTCAAC 59.240 37.037 0.90 0.00 35.11 3.18
5713 10099 6.972901 TGTAGCACTAAGATATTCAGTCAACG 59.027 38.462 0.00 0.00 0.00 4.10
5714 10100 6.208988 AGCACTAAGATATTCAGTCAACGA 57.791 37.500 0.00 0.00 0.00 3.85
5715 10101 6.037098 AGCACTAAGATATTCAGTCAACGAC 58.963 40.000 0.00 0.00 0.00 4.34
5716 10102 5.232414 GCACTAAGATATTCAGTCAACGACC 59.768 44.000 0.00 0.00 32.18 4.79
5717 10103 6.565234 CACTAAGATATTCAGTCAACGACCT 58.435 40.000 0.00 0.00 32.18 3.85
5718 10104 7.036220 CACTAAGATATTCAGTCAACGACCTT 58.964 38.462 0.00 0.00 32.18 3.50
5719 10105 7.009631 CACTAAGATATTCAGTCAACGACCTTG 59.990 40.741 0.00 0.00 32.18 3.61
5720 10106 4.759782 AGATATTCAGTCAACGACCTTGG 58.240 43.478 0.00 0.00 32.18 3.61
5721 10107 1.523758 ATTCAGTCAACGACCTTGGC 58.476 50.000 0.00 0.00 34.34 4.52
5722 10108 0.468226 TTCAGTCAACGACCTTGGCT 59.532 50.000 0.00 0.00 46.34 4.75
5723 10109 0.033504 TCAGTCAACGACCTTGGCTC 59.966 55.000 0.00 0.00 41.22 4.70
5724 10110 0.034059 CAGTCAACGACCTTGGCTCT 59.966 55.000 0.00 0.00 41.22 4.09
5725 10111 0.759346 AGTCAACGACCTTGGCTCTT 59.241 50.000 0.00 0.00 41.22 2.85
5726 10112 1.141053 AGTCAACGACCTTGGCTCTTT 59.859 47.619 0.00 0.00 41.22 2.52
5727 10113 2.367567 AGTCAACGACCTTGGCTCTTTA 59.632 45.455 0.00 0.00 41.22 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 9.874205 TGAATCTTGAGAACAAATTTTGAAACT 57.126 25.926 15.81 10.60 35.49 2.66
173 174 8.296713 CAGGAAGATTTTCTAAATTCCGAACAA 58.703 33.333 0.00 0.00 43.39 2.83
415 419 6.866248 ACAGAACACAAACGAGTTTTGAAAAT 59.134 30.769 3.81 0.00 46.76 1.82
542 546 0.730494 GGTGAAAGTGCAATGCGAGC 60.730 55.000 0.00 0.00 0.00 5.03
762 769 1.747709 AGCCATGCAGCTCTTTGTAG 58.252 50.000 0.00 0.00 39.48 2.74
763 770 2.027285 TGTAGCCATGCAGCTCTTTGTA 60.027 45.455 3.37 0.00 43.67 2.41
764 771 1.271543 TGTAGCCATGCAGCTCTTTGT 60.272 47.619 3.37 0.00 43.67 2.83
765 772 1.400846 CTGTAGCCATGCAGCTCTTTG 59.599 52.381 3.37 0.00 43.67 2.77
766 773 1.280133 TCTGTAGCCATGCAGCTCTTT 59.720 47.619 3.37 0.00 43.67 2.52
767 774 0.907486 TCTGTAGCCATGCAGCTCTT 59.093 50.000 3.37 0.00 43.67 2.85
768 775 0.907486 TTCTGTAGCCATGCAGCTCT 59.093 50.000 3.37 0.00 43.67 4.09
769 776 1.399791 GTTTCTGTAGCCATGCAGCTC 59.600 52.381 3.37 0.00 43.67 4.09
771 778 1.167851 TGTTTCTGTAGCCATGCAGC 58.832 50.000 0.00 0.00 38.88 5.25
772 779 3.366679 CCTTTGTTTCTGTAGCCATGCAG 60.367 47.826 0.00 0.00 40.24 4.41
773 780 2.557924 CCTTTGTTTCTGTAGCCATGCA 59.442 45.455 0.00 0.00 0.00 3.96
774 781 2.558359 ACCTTTGTTTCTGTAGCCATGC 59.442 45.455 0.00 0.00 0.00 4.06
882 918 5.037383 AGAGAAAACGAGACCTCCTTTTT 57.963 39.130 7.71 6.15 31.36 1.94
883 919 4.345547 AGAGAGAAAACGAGACCTCCTTTT 59.654 41.667 6.49 6.49 32.98 2.27
884 920 3.898741 AGAGAGAAAACGAGACCTCCTTT 59.101 43.478 0.00 0.00 0.00 3.11
885 921 3.257127 CAGAGAGAAAACGAGACCTCCTT 59.743 47.826 0.00 0.00 0.00 3.36
886 922 2.823154 CAGAGAGAAAACGAGACCTCCT 59.177 50.000 0.00 0.00 0.00 3.69
887 923 2.559231 ACAGAGAGAAAACGAGACCTCC 59.441 50.000 0.00 0.00 0.00 4.30
888 924 3.504520 AGACAGAGAGAAAACGAGACCTC 59.495 47.826 0.00 0.00 0.00 3.85
889 925 3.492337 AGACAGAGAGAAAACGAGACCT 58.508 45.455 0.00 0.00 0.00 3.85
890 926 3.504520 AGAGACAGAGAGAAAACGAGACC 59.495 47.826 0.00 0.00 0.00 3.85
891 927 4.454504 AGAGAGACAGAGAGAAAACGAGAC 59.545 45.833 0.00 0.00 0.00 3.36
892 928 4.647611 AGAGAGACAGAGAGAAAACGAGA 58.352 43.478 0.00 0.00 0.00 4.04
893 929 4.695455 AGAGAGAGACAGAGAGAAAACGAG 59.305 45.833 0.00 0.00 0.00 4.18
894 930 4.647611 AGAGAGAGACAGAGAGAAAACGA 58.352 43.478 0.00 0.00 0.00 3.85
895 931 4.454161 TGAGAGAGAGACAGAGAGAAAACG 59.546 45.833 0.00 0.00 0.00 3.60
896 932 5.957842 TGAGAGAGAGACAGAGAGAAAAC 57.042 43.478 0.00 0.00 0.00 2.43
897 933 6.968263 TTTGAGAGAGAGACAGAGAGAAAA 57.032 37.500 0.00 0.00 0.00 2.29
898 934 6.968263 TTTTGAGAGAGAGACAGAGAGAAA 57.032 37.500 0.00 0.00 0.00 2.52
899 935 6.968263 TTTTTGAGAGAGAGACAGAGAGAA 57.032 37.500 0.00 0.00 0.00 2.87
1077 1113 2.660552 CCGTCGTGGTTGAAGCGT 60.661 61.111 0.00 0.00 0.00 5.07
1173 1209 2.433491 TCGCGACCGTGGGATTTG 60.433 61.111 3.71 0.00 35.54 2.32
1231 1267 1.004745 TCAGATGGGAAGAAGGGTTGC 59.995 52.381 0.00 0.00 0.00 4.17
1261 1297 0.172578 GTTAAATTCCCCAGCCGTGC 59.827 55.000 0.00 0.00 0.00 5.34
1262 1298 0.450184 CGTTAAATTCCCCAGCCGTG 59.550 55.000 0.00 0.00 0.00 4.94
1263 1299 0.678684 CCGTTAAATTCCCCAGCCGT 60.679 55.000 0.00 0.00 0.00 5.68
1264 1300 2.000215 GCCGTTAAATTCCCCAGCCG 62.000 60.000 0.00 0.00 0.00 5.52
1265 1301 1.813859 GCCGTTAAATTCCCCAGCC 59.186 57.895 0.00 0.00 0.00 4.85
1266 1302 1.027792 TCGCCGTTAAATTCCCCAGC 61.028 55.000 0.00 0.00 0.00 4.85
1267 1303 0.730840 GTCGCCGTTAAATTCCCCAG 59.269 55.000 0.00 0.00 0.00 4.45
1268 1304 0.325602 AGTCGCCGTTAAATTCCCCA 59.674 50.000 0.00 0.00 0.00 4.96
1307 1343 3.414700 CCGCACGACACCAGCTTC 61.415 66.667 0.00 0.00 0.00 3.86
1376 1412 1.962306 GTTGTGGCCGCGGAACTTA 60.962 57.895 33.48 15.00 0.00 2.24
1411 1447 2.662535 ATCCCAATCAATCGATGGCA 57.337 45.000 0.00 0.00 30.13 4.92
1433 1469 2.092267 AGGGCATCAGCATCACATAACA 60.092 45.455 0.00 0.00 44.61 2.41
1436 1472 1.270465 CGAGGGCATCAGCATCACATA 60.270 52.381 0.00 0.00 44.61 2.29
1440 1476 1.402107 TAGCGAGGGCATCAGCATCA 61.402 55.000 15.71 1.47 44.61 3.07
1442 1478 1.370437 CTAGCGAGGGCATCAGCAT 59.630 57.895 15.71 6.16 44.61 3.79
1444 1480 1.593750 CACTAGCGAGGGCATCAGC 60.594 63.158 0.00 3.90 43.41 4.26
1503 1540 8.500753 TGACACCGAATTTGCTTAATAATACT 57.499 30.769 0.00 0.00 0.00 2.12
1507 1544 7.468084 GCCTATGACACCGAATTTGCTTAATAA 60.468 37.037 0.00 0.00 0.00 1.40
1508 1545 6.017440 GCCTATGACACCGAATTTGCTTAATA 60.017 38.462 0.00 0.00 0.00 0.98
1678 1717 4.891992 AATTACAGTGGTCTGCACTACT 57.108 40.909 0.00 0.00 44.84 2.57
1708 1877 3.318313 TCCACCAATCCCCTCTCTATTC 58.682 50.000 0.00 0.00 0.00 1.75
1786 1955 8.463930 TTGTCTTTACTCCAAGTTGATCATTT 57.536 30.769 3.87 0.00 0.00 2.32
1787 1956 7.175641 CCTTGTCTTTACTCCAAGTTGATCATT 59.824 37.037 3.87 0.00 35.02 2.57
1824 1994 4.298626 AGGAAACACAGGATAGCATAGGA 58.701 43.478 0.00 0.00 0.00 2.94
1829 1999 6.614694 TTAGTTAGGAAACACAGGATAGCA 57.385 37.500 0.00 0.00 38.12 3.49
1838 2008 4.201561 GCGTCGTGATTAGTTAGGAAACAC 60.202 45.833 0.00 0.00 38.12 3.32
1859 2029 4.318071 CACGTTGTTGAATTATGTTGAGCG 59.682 41.667 0.00 0.00 0.00 5.03
1860 2030 5.448438 TCACGTTGTTGAATTATGTTGAGC 58.552 37.500 0.00 0.00 0.00 4.26
1949 2119 8.064222 CCATTACAGTAGCAATCGTTAAATGAG 58.936 37.037 0.00 0.00 0.00 2.90
1956 2126 3.199071 TCCCCATTACAGTAGCAATCGTT 59.801 43.478 0.00 0.00 0.00 3.85
1973 2143 0.988145 CTTGCCCTATGAGGTCCCCA 60.988 60.000 0.00 0.00 31.93 4.96
1976 2146 2.365941 GAGTACTTGCCCTATGAGGTCC 59.634 54.545 0.00 0.00 31.93 4.46
2031 2202 7.771183 TCTAAAAACGGTAGTAATACCACGAT 58.229 34.615 18.82 4.01 40.08 3.73
2047 2218 7.749126 GGACATGGTATTTGAGTTCTAAAAACG 59.251 37.037 0.00 0.00 0.00 3.60
2157 2328 5.408604 GGCCTAATAATAATCACACTGTCGG 59.591 44.000 0.00 0.00 0.00 4.79
2167 2338 9.331282 GTATCACTGATGGGCCTAATAATAATC 57.669 37.037 4.53 0.00 0.00 1.75
2189 2360 8.232913 TGCTATTTTATCAGGTTTTGGGTATC 57.767 34.615 0.00 0.00 0.00 2.24
2224 2395 9.636789 TGGAGAATCATCAAGAATCAAACATAT 57.363 29.630 0.00 0.00 36.25 1.78
2225 2396 9.636789 ATGGAGAATCATCAAGAATCAAACATA 57.363 29.630 0.00 0.00 36.25 2.29
2234 2406 7.039574 TCAGCAAAAATGGAGAATCATCAAGAA 60.040 33.333 0.00 0.00 36.25 2.52
2283 2455 7.874940 TCATTAAACTTCACTGAATTGACCTG 58.125 34.615 0.00 0.00 0.00 4.00
2477 2651 5.240891 TGTCTGCACTAGGAGAGAAAATTG 58.759 41.667 0.00 0.00 43.30 2.32
2484 2658 4.462508 TCAATTGTCTGCACTAGGAGAG 57.537 45.455 5.13 0.00 43.30 3.20
2593 2767 2.872245 CACTTACCTACCCATGCGAATG 59.128 50.000 0.00 0.00 0.00 2.67
2721 2895 5.707298 ACAATGTAGAACCAGTCAAGGAATG 59.293 40.000 0.00 0.00 0.00 2.67
2787 2961 2.771943 GACAGGATGACCCAGGTTATCA 59.228 50.000 19.74 6.15 41.19 2.15
2940 3114 2.224402 CCTGAGTGCTAAATAGAGGGCC 60.224 54.545 0.00 0.00 0.00 5.80
2941 3115 2.700897 TCCTGAGTGCTAAATAGAGGGC 59.299 50.000 0.00 0.00 0.00 5.19
2970 3144 6.704310 ACTGCTTCAAATTTCAAATAGCCAT 58.296 32.000 1.04 0.00 0.00 4.40
2971 3145 6.100404 ACTGCTTCAAATTTCAAATAGCCA 57.900 33.333 1.04 0.00 0.00 4.75
3007 3181 7.337942 GGGTCTGATTTCATCATTCTACAAAGT 59.662 37.037 0.00 0.00 38.85 2.66
3037 3211 8.698973 TGTCATAATTCCAAGGAAAACTAACA 57.301 30.769 5.52 5.79 37.69 2.41
3038 3212 9.573133 CATGTCATAATTCCAAGGAAAACTAAC 57.427 33.333 5.52 3.43 37.69 2.34
3099 3273 9.112725 TCAAGTGTGACATAAATTCCTATGATG 57.887 33.333 4.50 0.00 34.07 3.07
3113 3287 6.582636 TCTGTTTCTAGTTCAAGTGTGACAT 58.417 36.000 0.00 0.00 31.90 3.06
3142 3316 5.296780 GTCAAGTCAAATCAAGTGAAGGACA 59.703 40.000 10.84 0.00 0.00 4.02
3154 3328 5.460419 CGTAGCTATCCAGTCAAGTCAAATC 59.540 44.000 0.00 0.00 0.00 2.17
3156 3330 4.461431 TCGTAGCTATCCAGTCAAGTCAAA 59.539 41.667 0.00 0.00 0.00 2.69
3159 3333 4.634184 TTCGTAGCTATCCAGTCAAGTC 57.366 45.455 0.00 0.00 0.00 3.01
3178 3352 6.039493 TCCGACTCAGTACAGGAAATAGATTC 59.961 42.308 0.00 0.00 37.31 2.52
3179 3353 5.892119 TCCGACTCAGTACAGGAAATAGATT 59.108 40.000 0.00 0.00 0.00 2.40
3201 3375 0.391263 GAAGACCCCATGTGTCGTCC 60.391 60.000 13.81 3.30 35.89 4.79
3300 3474 2.912771 TCTCCAAAGCACGAACAAGAA 58.087 42.857 0.00 0.00 0.00 2.52
3326 3500 3.295093 TGAAACAGCAGGTTCAAATCCA 58.705 40.909 7.17 0.00 39.29 3.41
3364 3538 8.190784 AGGCACTGTAATTTATCAAACTATTGC 58.809 33.333 0.00 0.00 37.18 3.56
3376 3550 6.303839 ACTTCCAAGAAGGCACTGTAATTTA 58.696 36.000 9.05 0.00 40.86 1.40
3406 3580 1.021968 GAAAAACTGGCCGTGTGACT 58.978 50.000 0.00 0.00 0.00 3.41
3411 3585 0.744281 ACAAGGAAAAACTGGCCGTG 59.256 50.000 0.00 0.00 37.23 4.94
3452 3626 0.319405 AACGGGGGAAGTACGTTCAG 59.681 55.000 0.00 0.00 46.50 3.02
3567 3741 9.616634 CAATAATATAAGATCGTTTGCAAGCAT 57.383 29.630 13.97 6.08 0.00 3.79
3569 3743 8.289618 TCCAATAATATAAGATCGTTTGCAAGC 58.710 33.333 2.75 2.75 0.00 4.01
3572 3746 8.729756 CCATCCAATAATATAAGATCGTTTGCA 58.270 33.333 0.00 0.00 0.00 4.08
3573 3747 8.946085 TCCATCCAATAATATAAGATCGTTTGC 58.054 33.333 0.00 0.00 0.00 3.68
3596 3774 1.909302 CTAAGGAAACTGCTCCCTCCA 59.091 52.381 0.00 0.00 42.68 3.86
3602 3780 6.073873 CGATGATGAATCTAAGGAAACTGCTC 60.074 42.308 0.00 0.00 34.99 4.26
3605 3783 7.278646 TGTTCGATGATGAATCTAAGGAAACTG 59.721 37.037 0.00 0.00 34.99 3.16
3787 3965 4.684485 GCTATGGCTCCTAAACTGTGATGT 60.684 45.833 0.00 0.00 35.22 3.06
3788 3966 3.812053 GCTATGGCTCCTAAACTGTGATG 59.188 47.826 0.00 0.00 35.22 3.07
3789 3967 4.078639 GCTATGGCTCCTAAACTGTGAT 57.921 45.455 0.00 0.00 35.22 3.06
3866 4121 5.828299 TCTCCGAAAAACAGAAACAATGT 57.172 34.783 0.00 0.00 0.00 2.71
3871 4126 4.033019 CCGTTTCTCCGAAAAACAGAAAC 58.967 43.478 11.94 11.94 46.74 2.78
3883 4138 2.736995 TCGCTTGCCGTTTCTCCG 60.737 61.111 0.00 0.00 38.35 4.63
3938 4193 0.322277 TCCCTCGTCGACTTGCTAGT 60.322 55.000 14.70 0.00 37.31 2.57
3960 4223 5.532406 ACTTGCATGTACAACAGAGATTTGT 59.468 36.000 2.92 0.00 40.34 2.83
4042 4305 2.224233 CCATCCACAACAAAATGGTGCA 60.224 45.455 0.00 0.00 39.04 4.57
4364 4628 2.721425 AGAAAACAAACCCGTCCTCA 57.279 45.000 0.00 0.00 0.00 3.86
4406 4670 1.464189 GCTCGGAAAGTCGCAACAATC 60.464 52.381 0.00 0.00 0.00 2.67
4491 4755 6.822170 GGGAGTAGGAAACAATACTTAACCAG 59.178 42.308 0.00 0.00 32.43 4.00
4512 4776 5.974108 TCTTGTATTTCTTTACGGAGGGAG 58.026 41.667 0.00 0.00 0.00 4.30
4513 4777 5.105064 CCTCTTGTATTTCTTTACGGAGGGA 60.105 44.000 11.96 0.00 39.00 4.20
4514 4778 5.116882 CCTCTTGTATTTCTTTACGGAGGG 58.883 45.833 11.96 0.00 39.00 4.30
4515 4779 5.731591 ACCTCTTGTATTTCTTTACGGAGG 58.268 41.667 15.50 15.50 43.13 4.30
4516 4780 6.310711 GTGACCTCTTGTATTTCTTTACGGAG 59.689 42.308 0.00 0.00 0.00 4.63
4517 4781 6.014840 AGTGACCTCTTGTATTTCTTTACGGA 60.015 38.462 0.00 0.00 0.00 4.69
4518 4782 6.164176 AGTGACCTCTTGTATTTCTTTACGG 58.836 40.000 0.00 0.00 0.00 4.02
4519 4783 8.752766 TTAGTGACCTCTTGTATTTCTTTACG 57.247 34.615 0.00 0.00 0.00 3.18
4556 4820 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
4557 4821 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
4558 4822 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
4559 4823 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
4560 4824 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
4568 4832 9.102453 ACTAAAGTACTCCCTCTGTAAAGAAAT 57.898 33.333 0.00 0.00 0.00 2.17
4569 4833 8.488308 ACTAAAGTACTCCCTCTGTAAAGAAA 57.512 34.615 0.00 0.00 0.00 2.52
4570 4834 8.488308 AACTAAAGTACTCCCTCTGTAAAGAA 57.512 34.615 0.00 0.00 0.00 2.52
4571 4835 8.365647 CAAACTAAAGTACTCCCTCTGTAAAGA 58.634 37.037 0.00 0.00 0.00 2.52
4572 4836 8.365647 TCAAACTAAAGTACTCCCTCTGTAAAG 58.634 37.037 0.00 0.00 0.00 1.85
4573 4837 8.253867 TCAAACTAAAGTACTCCCTCTGTAAA 57.746 34.615 0.00 0.00 0.00 2.01
4574 4838 7.844493 TCAAACTAAAGTACTCCCTCTGTAA 57.156 36.000 0.00 0.00 0.00 2.41
4575 4839 8.431910 AATCAAACTAAAGTACTCCCTCTGTA 57.568 34.615 0.00 0.00 0.00 2.74
4576 4840 6.936968 ATCAAACTAAAGTACTCCCTCTGT 57.063 37.500 0.00 0.00 0.00 3.41
4577 4841 8.622948 AAAATCAAACTAAAGTACTCCCTCTG 57.377 34.615 0.00 0.00 0.00 3.35
4619 4883 7.230510 TGCCAAAAGAAAGAGTAGCATAAGAAA 59.769 33.333 0.00 0.00 0.00 2.52
4660 4924 3.057526 GCAGGTCTTTGTTGGGTGATAAC 60.058 47.826 0.00 0.00 0.00 1.89
4734 4998 1.875514 TCATAGGCGCATCAGCAATTC 59.124 47.619 10.83 0.00 42.27 2.17
4764 5047 8.138928 TGAAACTACATAGATGGATGATAGGG 57.861 38.462 0.00 0.00 0.00 3.53
4833 5234 5.944013 TCTGAATACTTGACTCTGTTCTCG 58.056 41.667 0.00 0.00 0.00 4.04
4843 5244 4.521943 GATTGCGCATCTGAATACTTGAC 58.478 43.478 12.75 0.00 0.00 3.18
4849 5250 2.936919 AGGGATTGCGCATCTGAATA 57.063 45.000 12.75 0.00 31.67 1.75
4950 7664 6.099701 ACATACACTATCTTCCACAAGGCATA 59.900 38.462 0.00 0.00 33.74 3.14
4951 7665 5.104360 ACATACACTATCTTCCACAAGGCAT 60.104 40.000 0.00 0.00 33.74 4.40
4957 7671 9.201989 AGAGAATAACATACACTATCTTCCACA 57.798 33.333 0.00 0.00 0.00 4.17
5039 7753 2.194201 AAAACTATGTCACCACCCGG 57.806 50.000 0.00 0.00 38.77 5.73
5081 9048 4.860907 GTGCTAAACATCAATCAAAGCCAG 59.139 41.667 0.00 0.00 0.00 4.85
5107 9077 0.033699 GCCCTTGATCTTCCCTTGCT 60.034 55.000 0.00 0.00 0.00 3.91
5112 9082 2.058593 ATTTCGCCCTTGATCTTCCC 57.941 50.000 0.00 0.00 0.00 3.97
5137 9107 6.658831 TGTAGTTTTCTTCATTTTCAGCTCG 58.341 36.000 0.00 0.00 0.00 5.03
5160 9130 1.056700 ATAGGGCTGTAGGTGGGCTG 61.057 60.000 0.00 0.00 0.00 4.85
5200 9170 6.037610 CCTTTTTCGTCCTTGATCTTAGGATG 59.962 42.308 21.44 21.44 46.01 3.51
5217 9187 6.503524 TCATTTTCAGTTCCTTCCTTTTTCG 58.496 36.000 0.00 0.00 0.00 3.46
5223 9193 7.423844 AGTTTTTCATTTTCAGTTCCTTCCT 57.576 32.000 0.00 0.00 0.00 3.36
5225 9195 9.237846 CTGTAGTTTTTCATTTTCAGTTCCTTC 57.762 33.333 0.00 0.00 0.00 3.46
5230 9200 7.112452 AGGCTGTAGTTTTTCATTTTCAGTT 57.888 32.000 0.00 0.00 0.00 3.16
5305 9277 4.978083 AGCTGGAGCAAAATACATTGAG 57.022 40.909 0.65 0.00 45.16 3.02
5306 9278 4.883585 CCTAGCTGGAGCAAAATACATTGA 59.116 41.667 0.00 0.00 45.16 2.57
5330 9304 0.028505 CGATCAATGGAGCTTTGGCG 59.971 55.000 0.00 0.00 44.37 5.69
5414 9431 7.551585 CACCCGAGCATAGAAGAAGAATATAT 58.448 38.462 0.00 0.00 0.00 0.86
5478 9495 2.852449 CAGATGCCAGATGATGAGCTT 58.148 47.619 0.00 0.00 0.00 3.74
5492 9509 2.719979 CGGCTTCATGGCAGATGC 59.280 61.111 12.91 12.91 41.89 3.91
5495 9512 2.268920 GACCGGCTTCATGGCAGA 59.731 61.111 0.00 0.00 41.89 4.26
5496 9513 2.825836 GGACCGGCTTCATGGCAG 60.826 66.667 0.00 0.00 41.89 4.85
5497 9514 4.424711 GGGACCGGCTTCATGGCA 62.425 66.667 0.00 0.00 41.89 4.92
5498 9515 4.424711 TGGGACCGGCTTCATGGC 62.425 66.667 0.00 0.00 37.94 4.40
5499 9516 2.124570 CTGGGACCGGCTTCATGG 60.125 66.667 0.00 0.00 0.00 3.66
5500 9517 2.825836 GCTGGGACCGGCTTCATG 60.826 66.667 14.81 0.00 44.39 3.07
5550 9567 0.970937 TCCCCGTCTCCAGCTTGTAG 60.971 60.000 0.00 0.00 0.00 2.74
5551 9568 0.543410 TTCCCCGTCTCCAGCTTGTA 60.543 55.000 0.00 0.00 0.00 2.41
5553 9570 1.078848 CTTCCCCGTCTCCAGCTTG 60.079 63.158 0.00 0.00 0.00 4.01
5554 9571 2.960688 GCTTCCCCGTCTCCAGCTT 61.961 63.158 0.00 0.00 0.00 3.74
5556 9573 3.706373 TGCTTCCCCGTCTCCAGC 61.706 66.667 0.00 0.00 0.00 4.85
5599 9985 1.338579 CCAGCTCTGTCTCAGAAACCC 60.339 57.143 1.22 0.00 40.18 4.11
5610 9996 1.072965 AGCTACTTTTGCCAGCTCTGT 59.927 47.619 0.00 0.00 41.79 3.41
5637 10023 4.124351 CTGCAACGCCATGGCTGG 62.124 66.667 33.07 21.43 46.17 4.85
5648 10034 2.099062 CATCGCTTCGCCTGCAAC 59.901 61.111 0.00 0.00 0.00 4.17
5659 10045 3.454812 ACCCTTACTATTTCACCATCGCT 59.545 43.478 0.00 0.00 0.00 4.93
5660 10046 3.560068 CACCCTTACTATTTCACCATCGC 59.440 47.826 0.00 0.00 0.00 4.58
5661 10047 4.766375 ACACCCTTACTATTTCACCATCG 58.234 43.478 0.00 0.00 0.00 3.84
5662 10048 7.039993 ACAAAACACCCTTACTATTTCACCATC 60.040 37.037 0.00 0.00 0.00 3.51
5663 10049 6.780522 ACAAAACACCCTTACTATTTCACCAT 59.219 34.615 0.00 0.00 0.00 3.55
5664 10050 6.039941 CACAAAACACCCTTACTATTTCACCA 59.960 38.462 0.00 0.00 0.00 4.17
5665 10051 6.040054 ACACAAAACACCCTTACTATTTCACC 59.960 38.462 0.00 0.00 0.00 4.02
5666 10052 7.034685 ACACAAAACACCCTTACTATTTCAC 57.965 36.000 0.00 0.00 0.00 3.18
5667 10053 7.040961 GCTACACAAAACACCCTTACTATTTCA 60.041 37.037 0.00 0.00 0.00 2.69
5668 10054 7.040961 TGCTACACAAAACACCCTTACTATTTC 60.041 37.037 0.00 0.00 0.00 2.17
5669 10055 6.773685 TGCTACACAAAACACCCTTACTATTT 59.226 34.615 0.00 0.00 0.00 1.40
5670 10056 6.206048 GTGCTACACAAAACACCCTTACTATT 59.794 38.462 0.00 0.00 34.08 1.73
5671 10057 5.704053 GTGCTACACAAAACACCCTTACTAT 59.296 40.000 0.00 0.00 34.08 2.12
5672 10058 5.058490 GTGCTACACAAAACACCCTTACTA 58.942 41.667 0.00 0.00 34.08 1.82
5673 10059 3.881089 GTGCTACACAAAACACCCTTACT 59.119 43.478 0.00 0.00 34.08 2.24
5674 10060 3.881089 AGTGCTACACAAAACACCCTTAC 59.119 43.478 0.00 0.00 36.74 2.34
5675 10061 4.159244 AGTGCTACACAAAACACCCTTA 57.841 40.909 0.00 0.00 36.74 2.69
5676 10062 3.012934 AGTGCTACACAAAACACCCTT 57.987 42.857 0.00 0.00 36.74 3.95
5677 10063 2.729028 AGTGCTACACAAAACACCCT 57.271 45.000 0.00 0.00 36.74 4.34
5678 10064 4.131596 TCTTAGTGCTACACAAAACACCC 58.868 43.478 0.00 0.00 36.74 4.61
5679 10065 5.941948 ATCTTAGTGCTACACAAAACACC 57.058 39.130 0.00 0.00 36.74 4.16
5680 10066 8.717821 TGAATATCTTAGTGCTACACAAAACAC 58.282 33.333 0.00 0.00 36.74 3.32
5681 10067 8.840833 TGAATATCTTAGTGCTACACAAAACA 57.159 30.769 0.00 0.00 36.74 2.83
5682 10068 8.936864 ACTGAATATCTTAGTGCTACACAAAAC 58.063 33.333 0.00 0.00 36.74 2.43
5683 10069 9.151471 GACTGAATATCTTAGTGCTACACAAAA 57.849 33.333 0.00 0.00 36.74 2.44
5684 10070 8.311109 TGACTGAATATCTTAGTGCTACACAAA 58.689 33.333 0.00 0.00 36.74 2.83
5685 10071 7.836842 TGACTGAATATCTTAGTGCTACACAA 58.163 34.615 0.00 0.00 36.74 3.33
5686 10072 7.404671 TGACTGAATATCTTAGTGCTACACA 57.595 36.000 0.00 0.00 36.74 3.72
5687 10073 7.043986 CGTTGACTGAATATCTTAGTGCTACAC 60.044 40.741 0.00 0.00 34.10 2.90
5688 10074 6.972901 CGTTGACTGAATATCTTAGTGCTACA 59.027 38.462 0.00 0.00 0.00 2.74
5689 10075 7.166142 GTCGTTGACTGAATATCTTAGTGCTAC 59.834 40.741 0.00 0.00 0.00 3.58
5690 10076 7.194278 GTCGTTGACTGAATATCTTAGTGCTA 58.806 38.462 0.00 0.00 0.00 3.49
5691 10077 6.037098 GTCGTTGACTGAATATCTTAGTGCT 58.963 40.000 0.00 0.00 0.00 4.40
5692 10078 5.232414 GGTCGTTGACTGAATATCTTAGTGC 59.768 44.000 0.00 0.00 32.47 4.40
5693 10079 6.565234 AGGTCGTTGACTGAATATCTTAGTG 58.435 40.000 0.00 0.00 32.47 2.74
5694 10080 6.777213 AGGTCGTTGACTGAATATCTTAGT 57.223 37.500 0.00 0.00 32.47 2.24
5695 10081 6.477033 CCAAGGTCGTTGACTGAATATCTTAG 59.523 42.308 6.84 0.00 38.60 2.18
5696 10082 6.338146 CCAAGGTCGTTGACTGAATATCTTA 58.662 40.000 6.84 0.00 38.60 2.10
5697 10083 5.178797 CCAAGGTCGTTGACTGAATATCTT 58.821 41.667 6.84 0.00 38.60 2.40
5698 10084 4.759782 CCAAGGTCGTTGACTGAATATCT 58.240 43.478 6.84 0.00 38.60 1.98
5699 10085 3.309954 GCCAAGGTCGTTGACTGAATATC 59.690 47.826 6.84 0.00 38.60 1.63
5700 10086 3.055094 AGCCAAGGTCGTTGACTGAATAT 60.055 43.478 6.84 0.00 38.60 1.28
5701 10087 2.301870 AGCCAAGGTCGTTGACTGAATA 59.698 45.455 6.84 0.00 38.60 1.75
5702 10088 1.072331 AGCCAAGGTCGTTGACTGAAT 59.928 47.619 6.84 0.00 38.60 2.57
5703 10089 0.468226 AGCCAAGGTCGTTGACTGAA 59.532 50.000 6.84 0.00 38.60 3.02
5704 10090 0.033504 GAGCCAAGGTCGTTGACTGA 59.966 55.000 6.84 0.00 38.60 3.41
5705 10091 0.034059 AGAGCCAAGGTCGTTGACTG 59.966 55.000 6.84 0.00 38.60 3.51
5706 10092 0.759346 AAGAGCCAAGGTCGTTGACT 59.241 50.000 6.84 0.04 38.60 3.41
5707 10093 1.594331 AAAGAGCCAAGGTCGTTGAC 58.406 50.000 6.84 0.00 38.60 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.