Multiple sequence alignment - TraesCS6B01G274800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G274800 chr6B 100.000 3195 0 0 1 3195 496985491 496988685 0.000000e+00 5901.0
1 TraesCS6B01G274800 chr6B 98.837 172 2 0 2758 2929 214876634 214876463 1.110000e-79 307.0
2 TraesCS6B01G274800 chr6D 95.614 2029 62 12 752 2760 325821748 325819727 0.000000e+00 3229.0
3 TraesCS6B01G274800 chr6D 87.529 433 51 3 1236 1667 10810276 10809846 6.150000e-137 497.0
4 TraesCS6B01G274800 chr6D 97.388 268 7 0 2928 3195 325819746 325819479 1.040000e-124 457.0
5 TraesCS6B01G274800 chr6D 94.444 54 3 0 634 687 86803971 86803918 2.040000e-12 84.2
6 TraesCS6B01G274800 chr6A 93.621 1646 60 10 710 2325 464691324 464689694 0.000000e+00 2416.0
7 TraesCS6B01G274800 chr6A 91.944 360 6 4 2423 2760 464689651 464689293 1.720000e-132 483.0
8 TraesCS6B01G274800 chr6A 98.507 268 4 0 2928 3195 464689312 464689045 1.040000e-129 473.0
9 TraesCS6B01G274800 chr2D 86.926 849 111 0 1245 2093 526526865 526526017 0.000000e+00 953.0
10 TraesCS6B01G274800 chr2D 86.076 79 11 0 2955 3033 526516562 526516484 5.680000e-13 86.1
11 TraesCS6B01G274800 chr2B 86.808 849 112 0 1245 2093 622922682 622921834 0.000000e+00 948.0
12 TraesCS6B01G274800 chr2B 84.327 453 63 4 1531 1983 572269036 572268592 1.360000e-118 436.0
13 TraesCS6B01G274800 chr2B 83.871 93 15 0 2955 3047 622914438 622914346 4.390000e-14 89.8
14 TraesCS6B01G274800 chr2A 86.690 849 113 0 1245 2093 671712475 671711627 0.000000e+00 942.0
15 TraesCS6B01G274800 chr2A 87.603 605 66 3 1238 1834 535218087 535217484 0.000000e+00 693.0
16 TraesCS6B01G274800 chr2A 93.064 173 11 1 2758 2929 310388801 310388629 5.290000e-63 252.0
17 TraesCS6B01G274800 chr2A 83.871 93 15 0 2955 3047 671704443 671704351 4.390000e-14 89.8
18 TraesCS6B01G274800 chr1B 86.047 645 74 10 1202 1834 193288737 193289377 0.000000e+00 678.0
19 TraesCS6B01G274800 chr1B 85.146 377 48 5 1530 1904 625757433 625757063 2.330000e-101 379.0
20 TraesCS6B01G274800 chr1B 97.674 172 4 0 2758 2929 442069592 442069421 2.410000e-76 296.0
21 TraesCS6B01G274800 chr1B 90.667 75 5 2 1911 1984 625723727 625723654 7.290000e-17 99.0
22 TraesCS6B01G274800 chr3A 86.557 610 56 14 1237 1837 648104212 648104804 0.000000e+00 649.0
23 TraesCS6B01G274800 chr3A 98.256 172 3 0 2758 2929 217014923 217015094 5.180000e-78 302.0
24 TraesCS6B01G274800 chr3A 82.439 205 31 4 4 208 621234540 621234341 1.180000e-39 174.0
25 TraesCS6B01G274800 chr3A 91.379 58 5 0 630 687 641335697 641335640 2.640000e-11 80.5
26 TraesCS6B01G274800 chr5B 86.988 415 43 4 1256 1659 690230581 690230995 1.040000e-124 457.0
27 TraesCS6B01G274800 chr5B 98.837 172 2 0 2758 2929 157019507 157019336 1.110000e-79 307.0
28 TraesCS6B01G274800 chr5B 98.824 170 1 1 2758 2927 392137238 392137406 5.180000e-78 302.0
29 TraesCS6B01G274800 chr4A 83.161 386 50 14 1 378 56440018 56439640 3.950000e-89 339.0
30 TraesCS6B01G274800 chr4A 81.748 389 57 12 1 382 56435937 56435556 2.390000e-81 313.0
31 TraesCS6B01G274800 chr4A 81.107 307 54 4 1 305 88785016 88785320 3.180000e-60 243.0
32 TraesCS6B01G274800 chr4A 81.429 210 29 4 109 316 665623117 665622916 2.550000e-36 163.0
33 TraesCS6B01G274800 chr4D 81.649 376 59 10 1 372 165887287 165887656 1.440000e-78 303.0
34 TraesCS6B01G274800 chr4D 82.566 304 48 5 16 317 375378296 375377996 2.440000e-66 263.0
35 TraesCS6B01G274800 chr4D 93.064 173 12 0 2758 2930 323558890 323559062 1.470000e-63 254.0
36 TraesCS6B01G274800 chr4D 80.128 156 24 6 232 382 399168897 399168744 3.370000e-20 110.0
37 TraesCS6B01G274800 chr4B 98.276 174 2 1 2758 2931 363662107 363661935 1.440000e-78 303.0
38 TraesCS6B01G274800 chr4B 82.895 304 47 5 16 317 462242523 462242223 5.250000e-68 268.0
39 TraesCS6B01G274800 chr5A 81.132 318 52 5 1 312 26438340 26438655 6.840000e-62 248.0
40 TraesCS6B01G274800 chr7D 92.398 171 13 0 2758 2928 176516238 176516408 8.850000e-61 244.0
41 TraesCS6B01G274800 chr7B 72.840 324 50 28 25 335 533375137 533375435 3.420000e-10 76.8
42 TraesCS6B01G274800 chr7B 72.492 309 48 25 25 321 532913852 532913569 7.400000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G274800 chr6B 496985491 496988685 3194 False 5901 5901 100.000000 1 3195 1 chr6B.!!$F1 3194
1 TraesCS6B01G274800 chr6D 325819479 325821748 2269 True 1843 3229 96.501000 752 3195 2 chr6D.!!$R3 2443
2 TraesCS6B01G274800 chr6A 464689045 464691324 2279 True 1124 2416 94.690667 710 3195 3 chr6A.!!$R1 2485
3 TraesCS6B01G274800 chr2D 526526017 526526865 848 True 953 953 86.926000 1245 2093 1 chr2D.!!$R2 848
4 TraesCS6B01G274800 chr2B 622921834 622922682 848 True 948 948 86.808000 1245 2093 1 chr2B.!!$R3 848
5 TraesCS6B01G274800 chr2A 671711627 671712475 848 True 942 942 86.690000 1245 2093 1 chr2A.!!$R4 848
6 TraesCS6B01G274800 chr2A 535217484 535218087 603 True 693 693 87.603000 1238 1834 1 chr2A.!!$R2 596
7 TraesCS6B01G274800 chr1B 193288737 193289377 640 False 678 678 86.047000 1202 1834 1 chr1B.!!$F1 632
8 TraesCS6B01G274800 chr3A 648104212 648104804 592 False 649 649 86.557000 1237 1837 1 chr3A.!!$F2 600
9 TraesCS6B01G274800 chr4A 56435556 56440018 4462 True 326 339 82.454500 1 382 2 chr4A.!!$R2 381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
560 564 0.034767 ACCACGTCCCGAGACATAGA 60.035 55.0 0.00 0.0 43.73 1.98 F
684 688 0.103208 CGAAGAGGATCCGAACAGGG 59.897 60.0 5.98 0.0 41.52 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 4118 1.134907 GCCACAAATGAGGGATGCAAG 60.135 52.381 0.0 0.0 0.0 4.01 R
2648 5327 0.750249 CCCCCGAATTTACATTGCCC 59.250 55.000 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 7.060421 AGTTCCTATTTTTCTGACTTGGTCAA 58.940 34.615 2.04 0.00 42.26 3.18
67 68 8.791327 ATTTTTCTGACTTGGTCAACAATTTT 57.209 26.923 2.04 0.00 42.26 1.82
72 73 6.811170 TCTGACTTGGTCAACAATTTTTCAAC 59.189 34.615 2.04 0.00 42.26 3.18
75 76 6.159988 ACTTGGTCAACAATTTTTCAACGAA 58.840 32.000 0.00 0.00 38.65 3.85
82 83 7.164335 GTCAACAATTTTTCAACGAACTCTCTC 59.836 37.037 0.00 0.00 0.00 3.20
87 88 6.918892 TTTTTCAACGAACTCTCTCATTCA 57.081 33.333 0.00 0.00 0.00 2.57
94 95 4.172505 CGAACTCTCTCATTCAAGTGAGG 58.827 47.826 4.28 0.00 44.51 3.86
95 96 4.321601 CGAACTCTCTCATTCAAGTGAGGT 60.322 45.833 4.28 1.49 44.51 3.85
97 98 5.146010 ACTCTCTCATTCAAGTGAGGTTC 57.854 43.478 4.28 0.00 44.51 3.62
98 99 4.837860 ACTCTCTCATTCAAGTGAGGTTCT 59.162 41.667 4.28 0.00 44.51 3.01
100 101 6.495181 ACTCTCTCATTCAAGTGAGGTTCTAA 59.505 38.462 4.28 0.00 44.51 2.10
101 102 7.015682 ACTCTCTCATTCAAGTGAGGTTCTAAA 59.984 37.037 4.28 0.00 44.51 1.85
106 107 9.403110 CTCATTCAAGTGAGGTTCTAAATTTTG 57.597 33.333 0.00 0.00 41.49 2.44
113 114 9.546428 AAGTGAGGTTCTAAATTTTGAATTTGG 57.454 29.630 16.27 6.14 0.00 3.28
138 139 9.294030 GGTTCATGATTTTGATAAGTCAATGAC 57.706 33.333 5.02 5.02 43.49 3.06
162 163 3.244976 CTCAAATCAATCCGCAACAACC 58.755 45.455 0.00 0.00 0.00 3.77
174 177 4.278669 TCCGCAACAACCAGCTTATAAAAA 59.721 37.500 0.00 0.00 0.00 1.94
201 204 1.142748 CTCGCACCCTCTCATCACC 59.857 63.158 0.00 0.00 0.00 4.02
205 208 0.107945 GCACCCTCTCATCACCTGAC 60.108 60.000 0.00 0.00 0.00 3.51
208 211 2.238144 CACCCTCTCATCACCTGACAAT 59.762 50.000 0.00 0.00 0.00 2.71
209 212 2.915604 ACCCTCTCATCACCTGACAATT 59.084 45.455 0.00 0.00 0.00 2.32
210 213 3.331889 ACCCTCTCATCACCTGACAATTT 59.668 43.478 0.00 0.00 0.00 1.82
211 214 4.202609 ACCCTCTCATCACCTGACAATTTT 60.203 41.667 0.00 0.00 0.00 1.82
212 215 4.768968 CCCTCTCATCACCTGACAATTTTT 59.231 41.667 0.00 0.00 0.00 1.94
254 258 5.835113 AGCACCAATTAATACATGTGGTC 57.165 39.130 9.11 0.50 40.63 4.02
256 260 5.125417 AGCACCAATTAATACATGTGGTCAC 59.875 40.000 9.11 0.17 40.63 3.67
258 262 5.652014 CACCAATTAATACATGTGGTCACCT 59.348 40.000 9.11 0.00 40.63 4.00
259 263 6.152661 CACCAATTAATACATGTGGTCACCTT 59.847 38.462 9.11 0.00 40.63 3.50
261 265 7.234577 ACCAATTAATACATGTGGTCACCTTTT 59.765 33.333 9.11 0.00 38.16 2.27
274 278 4.202121 GGTCACCTTTTCAAGAAACTTCCC 60.202 45.833 0.00 0.00 0.00 3.97
277 281 4.402474 CACCTTTTCAAGAAACTTCCCTGT 59.598 41.667 0.00 0.00 0.00 4.00
281 285 7.447545 ACCTTTTCAAGAAACTTCCCTGTATAC 59.552 37.037 0.00 0.00 0.00 1.47
282 286 7.447238 CCTTTTCAAGAAACTTCCCTGTATACA 59.553 37.037 5.25 5.25 0.00 2.29
287 291 6.374417 AGAAACTTCCCTGTATACATGTGT 57.626 37.500 9.11 4.04 0.00 3.72
289 293 3.873910 ACTTCCCTGTATACATGTGTGC 58.126 45.455 9.11 6.12 0.00 4.57
290 294 3.519510 ACTTCCCTGTATACATGTGTGCT 59.480 43.478 9.11 0.00 0.00 4.40
296 300 6.542005 TCCCTGTATACATGTGTGCTAATTTG 59.458 38.462 9.11 0.00 0.00 2.32
297 301 6.201517 CCTGTATACATGTGTGCTAATTTGC 58.798 40.000 9.11 4.83 0.00 3.68
306 310 6.513806 TGTGTGCTAATTTGCAGATAACAT 57.486 33.333 14.96 0.00 44.20 2.71
347 351 6.764308 AGAGACCATCAAAATACCACATTG 57.236 37.500 0.00 0.00 0.00 2.82
349 353 6.721208 AGAGACCATCAAAATACCACATTGTT 59.279 34.615 0.00 0.00 0.00 2.83
352 356 9.034800 AGACCATCAAAATACCACATTGTTAAT 57.965 29.630 0.00 0.00 0.00 1.40
378 382 5.867903 AAAACATTTCACCATCTTCCACA 57.132 34.783 0.00 0.00 0.00 4.17
379 383 5.458041 AAACATTTCACCATCTTCCACAG 57.542 39.130 0.00 0.00 0.00 3.66
382 386 3.855255 TTTCACCATCTTCCACAGACA 57.145 42.857 0.00 0.00 32.83 3.41
387 391 1.432514 CATCTTCCACAGACACACCG 58.567 55.000 0.00 0.00 32.83 4.94
389 393 1.338107 TCTTCCACAGACACACCGAT 58.662 50.000 0.00 0.00 0.00 4.18
390 394 2.521126 TCTTCCACAGACACACCGATA 58.479 47.619 0.00 0.00 0.00 2.92
420 424 7.912056 TTTTGATGAAAAACCAACAACATCA 57.088 28.000 0.00 0.00 41.05 3.07
421 425 7.912056 TTTGATGAAAAACCAACAACATCAA 57.088 28.000 13.74 13.74 45.98 2.57
422 426 6.900568 TGATGAAAAACCAACAACATCAAC 57.099 33.333 0.00 0.00 40.25 3.18
424 428 6.534436 TGATGAAAAACCAACAACATCAACTG 59.466 34.615 0.00 0.00 40.25 3.16
425 429 5.788450 TGAAAAACCAACAACATCAACTGT 58.212 33.333 0.00 0.00 40.84 3.55
427 431 2.869233 ACCAACAACATCAACTGTGC 57.131 45.000 0.00 0.00 38.39 4.57
428 432 2.098614 ACCAACAACATCAACTGTGCA 58.901 42.857 0.00 0.00 38.39 4.57
429 433 2.099592 ACCAACAACATCAACTGTGCAG 59.900 45.455 0.00 0.00 38.39 4.41
431 435 0.308684 ACAACATCAACTGTGCAGCG 59.691 50.000 0.00 0.00 38.39 5.18
432 436 0.308684 CAACATCAACTGTGCAGCGT 59.691 50.000 0.00 0.00 38.39 5.07
434 438 1.432514 ACATCAACTGTGCAGCGTAG 58.567 50.000 0.00 0.00 36.48 3.51
447 451 4.827481 CGTAGCGCACCCAATACT 57.173 55.556 11.47 0.00 0.00 2.12
448 452 3.059603 CGTAGCGCACCCAATACTT 57.940 52.632 11.47 0.00 0.00 2.24
451 455 2.223641 CGTAGCGCACCCAATACTTCTA 60.224 50.000 11.47 0.00 0.00 2.10
453 457 1.831736 AGCGCACCCAATACTTCTAGT 59.168 47.619 11.47 0.00 0.00 2.57
454 458 1.933853 GCGCACCCAATACTTCTAGTG 59.066 52.381 0.30 0.00 0.00 2.74
455 459 2.418197 GCGCACCCAATACTTCTAGTGA 60.418 50.000 0.30 0.00 0.00 3.41
457 461 4.442706 CGCACCCAATACTTCTAGTGAAT 58.557 43.478 0.00 0.00 0.00 2.57
458 462 4.876107 CGCACCCAATACTTCTAGTGAATT 59.124 41.667 0.00 0.00 0.00 2.17
459 463 5.354234 CGCACCCAATACTTCTAGTGAATTT 59.646 40.000 0.00 0.00 0.00 1.82
460 464 6.128007 CGCACCCAATACTTCTAGTGAATTTT 60.128 38.462 0.00 0.00 0.00 1.82
461 465 7.065324 CGCACCCAATACTTCTAGTGAATTTTA 59.935 37.037 0.00 0.00 0.00 1.52
462 466 8.903820 GCACCCAATACTTCTAGTGAATTTTAT 58.096 33.333 0.00 0.00 0.00 1.40
464 468 9.975218 ACCCAATACTTCTAGTGAATTTTATGT 57.025 29.630 0.00 0.00 0.00 2.29
499 503 9.905171 TGTATTCATGTTTTTGATTGAATTCGA 57.095 25.926 0.00 0.00 39.07 3.71
502 506 6.980593 TCATGTTTTTGATTGAATTCGAGGT 58.019 32.000 1.10 0.00 0.00 3.85
503 507 7.432869 TCATGTTTTTGATTGAATTCGAGGTT 58.567 30.769 1.10 0.00 0.00 3.50
504 508 7.925483 TCATGTTTTTGATTGAATTCGAGGTTT 59.075 29.630 1.10 0.00 0.00 3.27
505 509 8.550376 CATGTTTTTGATTGAATTCGAGGTTTT 58.450 29.630 1.10 0.00 0.00 2.43
507 511 9.587772 TGTTTTTGATTGAATTCGAGGTTTTAA 57.412 25.926 1.10 0.00 0.00 1.52
522 526 9.509956 TCGAGGTTTTAAAAATAAGGATTCTGA 57.490 29.630 1.31 0.00 0.00 3.27
529 533 9.874205 TTTAAAAATAAGGATTCTGATTGCTGG 57.126 29.630 0.00 0.00 0.00 4.85
530 534 6.475596 AAAATAAGGATTCTGATTGCTGGG 57.524 37.500 0.00 0.00 0.00 4.45
531 535 4.803329 ATAAGGATTCTGATTGCTGGGT 57.197 40.909 0.00 0.00 0.00 4.51
535 539 0.911769 ATTCTGATTGCTGGGTCGGA 59.088 50.000 0.00 0.00 0.00 4.55
536 540 0.036388 TTCTGATTGCTGGGTCGGAC 60.036 55.000 0.00 0.00 29.86 4.79
537 541 1.191489 TCTGATTGCTGGGTCGGACA 61.191 55.000 10.76 0.00 0.00 4.02
538 542 0.107508 CTGATTGCTGGGTCGGACAT 60.108 55.000 10.76 0.00 0.00 3.06
539 543 1.138859 CTGATTGCTGGGTCGGACATA 59.861 52.381 10.76 0.00 0.00 2.29
540 544 1.134521 TGATTGCTGGGTCGGACATAC 60.135 52.381 10.76 0.27 0.00 2.39
541 545 0.908910 ATTGCTGGGTCGGACATACA 59.091 50.000 10.76 5.00 0.00 2.29
542 546 0.036765 TTGCTGGGTCGGACATACAC 60.037 55.000 10.76 0.00 0.00 2.90
543 547 1.153429 GCTGGGTCGGACATACACC 60.153 63.158 10.76 1.99 0.00 4.16
544 548 1.895020 GCTGGGTCGGACATACACCA 61.895 60.000 10.76 6.68 31.06 4.17
545 549 0.108329 CTGGGTCGGACATACACCAC 60.108 60.000 10.76 0.00 31.06 4.16
547 551 1.588082 GGTCGGACATACACCACGT 59.412 57.895 10.76 0.00 0.00 4.49
548 552 0.457337 GGTCGGACATACACCACGTC 60.457 60.000 10.76 0.00 0.00 4.34
549 553 0.457337 GTCGGACATACACCACGTCC 60.457 60.000 2.62 0.00 44.79 4.79
550 554 1.153706 CGGACATACACCACGTCCC 60.154 63.158 0.00 0.00 45.34 4.46
551 555 1.153706 GGACATACACCACGTCCCG 60.154 63.158 0.00 0.00 42.87 5.14
552 556 1.597797 GGACATACACCACGTCCCGA 61.598 60.000 0.00 0.00 42.87 5.14
553 557 0.179145 GACATACACCACGTCCCGAG 60.179 60.000 0.00 0.00 0.00 4.63
554 558 0.609957 ACATACACCACGTCCCGAGA 60.610 55.000 0.00 0.00 0.00 4.04
555 559 0.179145 CATACACCACGTCCCGAGAC 60.179 60.000 0.00 0.00 39.83 3.36
556 560 0.609957 ATACACCACGTCCCGAGACA 60.610 55.000 0.00 0.00 43.73 3.41
557 561 0.609957 TACACCACGTCCCGAGACAT 60.610 55.000 0.00 0.00 43.73 3.06
558 562 0.609957 ACACCACGTCCCGAGACATA 60.610 55.000 0.00 0.00 43.73 2.29
559 563 0.100682 CACCACGTCCCGAGACATAG 59.899 60.000 0.00 0.00 43.73 2.23
560 564 0.034767 ACCACGTCCCGAGACATAGA 60.035 55.000 0.00 0.00 43.73 1.98
561 565 0.381089 CCACGTCCCGAGACATAGAC 59.619 60.000 0.00 0.00 43.73 2.59
562 566 1.092348 CACGTCCCGAGACATAGACA 58.908 55.000 0.00 0.00 43.73 3.41
564 568 2.876550 CACGTCCCGAGACATAGACATA 59.123 50.000 0.00 0.00 43.73 2.29
565 569 3.502595 CACGTCCCGAGACATAGACATAT 59.497 47.826 0.00 0.00 43.73 1.78
566 570 4.694037 CACGTCCCGAGACATAGACATATA 59.306 45.833 0.00 0.00 43.73 0.86
568 572 6.537660 CACGTCCCGAGACATAGACATATATA 59.462 42.308 0.00 0.00 43.73 0.86
569 573 7.065443 CACGTCCCGAGACATAGACATATATAA 59.935 40.741 0.00 0.00 43.73 0.98
571 575 8.070769 CGTCCCGAGACATAGACATATATAATG 58.929 40.741 0.00 0.00 43.73 1.90
572 576 7.863375 GTCCCGAGACATAGACATATATAATGC 59.137 40.741 0.00 0.00 42.99 3.56
573 577 7.014326 TCCCGAGACATAGACATATATAATGCC 59.986 40.741 0.00 0.00 0.00 4.40
574 578 7.014711 CCCGAGACATAGACATATATAATGCCT 59.985 40.741 0.00 0.00 0.00 4.75
575 579 7.864882 CCGAGACATAGACATATATAATGCCTG 59.135 40.741 0.00 0.00 0.00 4.85
580 584 8.749354 ACATAGACATATATAATGCCTGTTCGA 58.251 33.333 0.00 0.00 0.00 3.71
581 585 9.586435 CATAGACATATATAATGCCTGTTCGAA 57.414 33.333 0.00 0.00 0.00 3.71
583 587 8.311650 AGACATATATAATGCCTGTTCGAAAC 57.688 34.615 0.00 0.00 0.00 2.78
584 588 7.387948 AGACATATATAATGCCTGTTCGAAACC 59.612 37.037 0.00 0.00 0.00 3.27
585 589 7.224297 ACATATATAATGCCTGTTCGAAACCT 58.776 34.615 0.00 0.00 0.00 3.50
586 590 7.387948 ACATATATAATGCCTGTTCGAAACCTC 59.612 37.037 0.00 0.00 0.00 3.85
587 591 2.568623 AATGCCTGTTCGAAACCTCT 57.431 45.000 0.00 0.00 0.00 3.69
588 592 2.568623 ATGCCTGTTCGAAACCTCTT 57.431 45.000 0.00 0.00 0.00 2.85
589 593 1.878953 TGCCTGTTCGAAACCTCTTC 58.121 50.000 0.00 0.00 0.00 2.87
591 595 1.801178 GCCTGTTCGAAACCTCTTCAG 59.199 52.381 0.00 0.71 0.00 3.02
592 596 2.807108 GCCTGTTCGAAACCTCTTCAGT 60.807 50.000 0.00 0.00 0.00 3.41
593 597 3.060602 CCTGTTCGAAACCTCTTCAGTC 58.939 50.000 0.00 0.00 0.00 3.51
595 599 1.456165 GTTCGAAACCTCTTCAGTCGC 59.544 52.381 0.00 0.00 0.00 5.19
596 600 0.386858 TCGAAACCTCTTCAGTCGCG 60.387 55.000 0.00 0.00 0.00 5.87
598 602 1.779569 GAAACCTCTTCAGTCGCGAA 58.220 50.000 12.06 0.00 0.00 4.70
599 603 2.132762 GAAACCTCTTCAGTCGCGAAA 58.867 47.619 12.06 0.00 0.00 3.46
600 604 1.499049 AACCTCTTCAGTCGCGAAAC 58.501 50.000 12.06 0.00 0.00 2.78
601 605 0.674534 ACCTCTTCAGTCGCGAAACT 59.325 50.000 12.06 1.35 0.00 2.66
602 606 1.336056 ACCTCTTCAGTCGCGAAACTC 60.336 52.381 12.06 0.00 0.00 3.01
604 608 0.671796 TCTTCAGTCGCGAAACTCCA 59.328 50.000 12.06 0.00 0.00 3.86
605 609 0.784778 CTTCAGTCGCGAAACTCCAC 59.215 55.000 12.06 0.00 0.00 4.02
606 610 0.387929 TTCAGTCGCGAAACTCCACT 59.612 50.000 12.06 0.00 0.00 4.00
608 612 1.009389 CAGTCGCGAAACTCCACTCC 61.009 60.000 12.06 0.00 0.00 3.85
610 614 3.479269 CGCGAAACTCCACTCCGC 61.479 66.667 0.00 0.00 42.11 5.54
613 617 3.479269 GAAACTCCACTCCGCGCG 61.479 66.667 25.67 25.67 0.00 6.86
614 618 3.909258 GAAACTCCACTCCGCGCGA 62.909 63.158 34.63 16.66 0.00 5.87
615 619 3.916392 AAACTCCACTCCGCGCGAG 62.916 63.158 34.63 26.91 44.95 5.03
625 629 4.785512 CGCGCGAGGAGCTCTGTT 62.786 66.667 28.94 0.00 45.59 3.16
626 630 2.883253 GCGCGAGGAGCTCTGTTC 60.883 66.667 12.10 8.35 45.59 3.18
627 631 2.578178 CGCGAGGAGCTCTGTTCG 60.578 66.667 22.52 22.52 45.59 3.95
629 633 1.226547 GCGAGGAGCTCTGTTCGAG 60.227 63.158 27.55 10.95 44.04 4.04
636 640 4.900154 CTCTGTTCGAGCCACTCC 57.100 61.111 0.00 0.00 31.99 3.85
637 641 1.216710 CTCTGTTCGAGCCACTCCC 59.783 63.158 0.00 0.00 31.99 4.30
638 642 1.228894 TCTGTTCGAGCCACTCCCT 60.229 57.895 0.00 0.00 0.00 4.20
639 643 1.216710 CTGTTCGAGCCACTCCCTC 59.783 63.158 0.00 0.00 0.00 4.30
640 644 2.232298 CTGTTCGAGCCACTCCCTCC 62.232 65.000 0.00 0.00 0.00 4.30
644 648 3.394836 GAGCCACTCCCTCCGCTT 61.395 66.667 0.00 0.00 0.00 4.68
645 649 3.378399 GAGCCACTCCCTCCGCTTC 62.378 68.421 0.00 0.00 0.00 3.86
646 650 4.821589 GCCACTCCCTCCGCTTCG 62.822 72.222 0.00 0.00 0.00 3.79
659 663 3.571119 CTTCGGGAGCTGCAGTTG 58.429 61.111 16.64 0.00 0.00 3.16
660 664 1.302033 CTTCGGGAGCTGCAGTTGT 60.302 57.895 16.64 0.00 0.00 3.32
661 665 1.572085 CTTCGGGAGCTGCAGTTGTG 61.572 60.000 16.64 1.20 0.00 3.33
663 667 2.431683 GGGAGCTGCAGTTGTGGA 59.568 61.111 16.64 0.00 0.00 4.02
664 668 1.673665 GGGAGCTGCAGTTGTGGAG 60.674 63.158 16.64 0.00 44.77 3.86
668 672 4.047834 CTGCAGTTGTGGAGCGAA 57.952 55.556 5.25 0.00 35.07 4.70
669 673 1.864862 CTGCAGTTGTGGAGCGAAG 59.135 57.895 5.25 0.00 35.07 3.79
670 674 0.601046 CTGCAGTTGTGGAGCGAAGA 60.601 55.000 5.25 0.00 35.07 2.87
672 676 1.294659 GCAGTTGTGGAGCGAAGAGG 61.295 60.000 0.00 0.00 0.00 3.69
673 677 0.318441 CAGTTGTGGAGCGAAGAGGA 59.682 55.000 0.00 0.00 0.00 3.71
674 678 1.066573 CAGTTGTGGAGCGAAGAGGAT 60.067 52.381 0.00 0.00 0.00 3.24
677 681 1.066587 GTGGAGCGAAGAGGATCCG 59.933 63.158 5.98 0.00 34.39 4.18
678 682 1.076995 TGGAGCGAAGAGGATCCGA 60.077 57.895 5.98 0.00 34.39 4.55
679 683 0.683179 TGGAGCGAAGAGGATCCGAA 60.683 55.000 5.98 0.00 34.39 4.30
680 684 0.249114 GGAGCGAAGAGGATCCGAAC 60.249 60.000 5.98 2.25 33.66 3.95
681 685 0.456221 GAGCGAAGAGGATCCGAACA 59.544 55.000 5.98 0.00 33.66 3.18
682 686 0.457851 AGCGAAGAGGATCCGAACAG 59.542 55.000 5.98 0.54 33.66 3.16
684 688 0.103208 CGAAGAGGATCCGAACAGGG 59.897 60.000 5.98 0.00 41.52 4.45
685 689 0.179070 GAAGAGGATCCGAACAGGGC 60.179 60.000 5.98 0.00 41.52 5.19
686 690 1.627297 AAGAGGATCCGAACAGGGCC 61.627 60.000 5.98 0.00 41.52 5.80
687 691 2.285368 AGGATCCGAACAGGGCCA 60.285 61.111 6.18 0.00 41.52 5.36
688 692 1.910580 GAGGATCCGAACAGGGCCAA 61.911 60.000 6.18 0.00 41.52 4.52
689 693 1.227383 GGATCCGAACAGGGCCAAT 59.773 57.895 6.18 0.00 41.52 3.16
690 694 1.103398 GGATCCGAACAGGGCCAATG 61.103 60.000 6.18 5.16 41.52 2.82
692 696 2.572333 ATCCGAACAGGGCCAATGGG 62.572 60.000 6.18 1.76 41.52 4.00
718 722 4.351874 AGTATGGGGTCACATTTATCCG 57.648 45.455 0.00 0.00 32.39 4.18
747 751 2.827652 GGAAATGCTCCGAGTAAGAGG 58.172 52.381 0.00 0.00 33.37 3.69
813 924 4.828939 AGGACTGCTGAAAACATGAATGAA 59.171 37.500 0.00 0.00 0.00 2.57
815 926 5.984926 GGACTGCTGAAAACATGAATGAAAA 59.015 36.000 0.00 0.00 0.00 2.29
845 1151 0.242017 ATGAACGCCTTTCTGCAAGC 59.758 50.000 0.00 0.00 34.97 4.01
1063 1661 3.175710 AACACCAAGGCTCCCCGT 61.176 61.111 0.00 0.00 35.76 5.28
1086 1684 1.026182 CCGCAGCAATGCTCCTAACA 61.026 55.000 4.03 0.00 36.40 2.41
1941 2925 2.938798 ATGGTGGCCGAGGGGAAA 60.939 61.111 0.00 0.00 34.06 3.13
2155 4118 2.109774 TCATTCATTGGGTTGGATGGC 58.890 47.619 0.00 0.00 33.99 4.40
2175 4139 0.896923 TTGCATCCCTCATTTGTGGC 59.103 50.000 0.00 0.00 0.00 5.01
2198 4162 5.439828 CAACTGTGTTTTCGATTCGAATCA 58.560 37.500 31.57 18.77 45.28 2.57
2254 4218 9.772973 TTAAGCAGAATATATACATTTCGTGGT 57.227 29.630 0.00 0.00 0.00 4.16
2282 4919 7.605309 AGATTTTCCAATTCTTTTCAGCATTCC 59.395 33.333 0.00 0.00 0.00 3.01
2404 5042 6.768078 TCAGTTACAGAAACGAAAAACAGAC 58.232 36.000 0.00 0.00 43.29 3.51
2502 5181 1.908619 TGTGCCTGTGATGTCCTACAT 59.091 47.619 0.00 0.00 42.43 2.29
2648 5327 1.885560 TCAACCATGGTTACCACACG 58.114 50.000 29.36 15.34 35.80 4.49
2666 5346 0.383949 CGGGCAATGTAAATTCGGGG 59.616 55.000 0.00 0.00 0.00 5.73
2747 5427 2.158755 CCCTGCACCATAACTAAGAGGG 60.159 54.545 0.00 0.00 33.23 4.30
2748 5428 2.565841 CTGCACCATAACTAAGAGGGC 58.434 52.381 0.00 0.00 0.00 5.19
2749 5429 1.912731 TGCACCATAACTAAGAGGGCA 59.087 47.619 0.00 0.00 0.00 5.36
2750 5430 2.509548 TGCACCATAACTAAGAGGGCAT 59.490 45.455 0.00 0.00 0.00 4.40
2751 5431 2.880890 GCACCATAACTAAGAGGGCATG 59.119 50.000 0.00 0.00 0.00 4.06
2752 5432 3.433598 GCACCATAACTAAGAGGGCATGA 60.434 47.826 0.00 0.00 0.00 3.07
2753 5433 4.780815 CACCATAACTAAGAGGGCATGAA 58.219 43.478 0.00 0.00 0.00 2.57
2754 5434 5.192927 CACCATAACTAAGAGGGCATGAAA 58.807 41.667 0.00 0.00 0.00 2.69
2755 5435 5.652014 CACCATAACTAAGAGGGCATGAAAA 59.348 40.000 0.00 0.00 0.00 2.29
2756 5436 5.652452 ACCATAACTAAGAGGGCATGAAAAC 59.348 40.000 0.00 0.00 0.00 2.43
2757 5437 5.067805 CCATAACTAAGAGGGCATGAAAACC 59.932 44.000 0.00 0.00 0.00 3.27
2758 5438 4.388577 AACTAAGAGGGCATGAAAACCT 57.611 40.909 0.00 0.00 37.31 3.50
2759 5439 3.690460 ACTAAGAGGGCATGAAAACCTG 58.310 45.455 0.00 0.00 34.02 4.00
2760 5440 1.928868 AAGAGGGCATGAAAACCTGG 58.071 50.000 0.00 0.00 34.02 4.45
2761 5441 0.040204 AGAGGGCATGAAAACCTGGG 59.960 55.000 0.00 0.00 34.02 4.45
2762 5442 1.607801 GAGGGCATGAAAACCTGGGC 61.608 60.000 0.00 0.00 34.02 5.36
2763 5443 1.912763 GGGCATGAAAACCTGGGCA 60.913 57.895 0.00 0.00 0.00 5.36
2764 5444 1.479368 GGGCATGAAAACCTGGGCAA 61.479 55.000 0.00 0.00 0.00 4.52
2765 5445 0.037046 GGCATGAAAACCTGGGCAAG 60.037 55.000 0.00 0.00 0.00 4.01
2766 5446 0.968405 GCATGAAAACCTGGGCAAGA 59.032 50.000 0.00 0.00 0.00 3.02
2767 5447 1.067354 GCATGAAAACCTGGGCAAGAG 60.067 52.381 0.00 0.00 0.00 2.85
2768 5448 1.067354 CATGAAAACCTGGGCAAGAGC 60.067 52.381 0.00 0.00 41.10 4.09
2769 5449 0.185901 TGAAAACCTGGGCAAGAGCT 59.814 50.000 0.00 0.00 41.70 4.09
2770 5450 0.600057 GAAAACCTGGGCAAGAGCTG 59.400 55.000 0.00 0.00 41.70 4.24
2771 5451 0.829182 AAAACCTGGGCAAGAGCTGG 60.829 55.000 0.00 0.00 41.70 4.85
2777 5457 3.446570 GGCAAGAGCTGGCGCATT 61.447 61.111 10.83 0.00 41.35 3.56
2778 5458 2.202570 GCAAGAGCTGGCGCATTG 60.203 61.111 10.83 5.08 39.10 2.82
2779 5459 2.488355 CAAGAGCTGGCGCATTGG 59.512 61.111 10.83 0.00 39.10 3.16
2780 5460 2.753043 AAGAGCTGGCGCATTGGG 60.753 61.111 10.83 0.00 39.10 4.12
2781 5461 4.809496 AGAGCTGGCGCATTGGGG 62.809 66.667 10.83 0.00 39.10 4.96
2805 5485 4.994744 GCCATCTTGCCACAAACC 57.005 55.556 0.00 0.00 0.00 3.27
2806 5486 2.354902 GCCATCTTGCCACAAACCT 58.645 52.632 0.00 0.00 0.00 3.50
2807 5487 0.037975 GCCATCTTGCCACAAACCTG 60.038 55.000 0.00 0.00 0.00 4.00
2808 5488 0.604578 CCATCTTGCCACAAACCTGG 59.395 55.000 0.00 0.00 0.00 4.45
2809 5489 0.604578 CATCTTGCCACAAACCTGGG 59.395 55.000 0.00 0.00 0.00 4.45
2810 5490 0.482446 ATCTTGCCACAAACCTGGGA 59.518 50.000 0.00 0.00 0.00 4.37
2811 5491 0.482446 TCTTGCCACAAACCTGGGAT 59.518 50.000 0.00 0.00 30.63 3.85
2812 5492 0.604578 CTTGCCACAAACCTGGGATG 59.395 55.000 0.00 0.00 30.63 3.51
2813 5493 0.105760 TTGCCACAAACCTGGGATGT 60.106 50.000 0.00 0.00 30.63 3.06
2814 5494 0.539438 TGCCACAAACCTGGGATGTC 60.539 55.000 0.00 0.00 0.00 3.06
2815 5495 1.250840 GCCACAAACCTGGGATGTCC 61.251 60.000 0.00 0.00 0.00 4.02
2816 5496 0.112218 CCACAAACCTGGGATGTCCA 59.888 55.000 0.00 0.00 44.79 4.02
2817 5497 1.247567 CACAAACCTGGGATGTCCAC 58.752 55.000 0.00 0.00 41.46 4.02
2818 5498 1.149101 ACAAACCTGGGATGTCCACT 58.851 50.000 0.00 0.00 41.46 4.00
2819 5499 2.039746 CACAAACCTGGGATGTCCACTA 59.960 50.000 0.00 0.00 41.46 2.74
2820 5500 2.714250 ACAAACCTGGGATGTCCACTAA 59.286 45.455 0.00 0.00 41.46 2.24
2821 5501 3.333680 ACAAACCTGGGATGTCCACTAAT 59.666 43.478 0.00 0.00 41.46 1.73
2822 5502 3.652057 AACCTGGGATGTCCACTAATG 57.348 47.619 0.00 0.00 41.46 1.90
2823 5503 2.562296 ACCTGGGATGTCCACTAATGT 58.438 47.619 0.00 0.00 41.46 2.71
2824 5504 2.239654 ACCTGGGATGTCCACTAATGTG 59.760 50.000 0.00 0.00 41.46 3.21
2825 5505 2.292267 CTGGGATGTCCACTAATGTGC 58.708 52.381 0.86 0.00 41.46 4.57
2826 5506 1.632920 TGGGATGTCCACTAATGTGCA 59.367 47.619 0.86 0.00 41.46 4.57
2827 5507 2.241941 TGGGATGTCCACTAATGTGCAT 59.758 45.455 0.86 0.00 41.46 3.96
2828 5508 2.620115 GGGATGTCCACTAATGTGCATG 59.380 50.000 0.86 0.00 42.54 4.06
2829 5509 3.282021 GGATGTCCACTAATGTGCATGT 58.718 45.455 0.00 0.00 42.54 3.21
2830 5510 4.450976 GGATGTCCACTAATGTGCATGTA 58.549 43.478 0.00 0.00 42.54 2.29
2831 5511 4.273480 GGATGTCCACTAATGTGCATGTAC 59.727 45.833 7.03 7.03 42.54 2.90
2832 5512 4.551702 TGTCCACTAATGTGCATGTACT 57.448 40.909 15.25 0.00 42.54 2.73
2833 5513 4.503910 TGTCCACTAATGTGCATGTACTC 58.496 43.478 15.25 0.00 42.54 2.59
2834 5514 4.222810 TGTCCACTAATGTGCATGTACTCT 59.777 41.667 15.25 4.73 42.54 3.24
2835 5515 4.806247 GTCCACTAATGTGCATGTACTCTC 59.194 45.833 15.25 0.00 42.54 3.20
2836 5516 4.122776 CCACTAATGTGCATGTACTCTCC 58.877 47.826 15.25 0.00 42.54 3.71
2837 5517 3.798878 CACTAATGTGCATGTACTCTCCG 59.201 47.826 15.25 2.99 37.38 4.63
2838 5518 3.447586 ACTAATGTGCATGTACTCTCCGT 59.552 43.478 15.25 3.57 0.00 4.69
2839 5519 2.299993 ATGTGCATGTACTCTCCGTG 57.700 50.000 15.25 0.00 0.00 4.94
2840 5520 0.966179 TGTGCATGTACTCTCCGTGT 59.034 50.000 15.25 0.00 0.00 4.49
2841 5521 2.164338 TGTGCATGTACTCTCCGTGTA 58.836 47.619 15.25 0.00 0.00 2.90
2842 5522 2.559231 TGTGCATGTACTCTCCGTGTAA 59.441 45.455 15.25 0.00 0.00 2.41
2843 5523 3.006003 TGTGCATGTACTCTCCGTGTAAA 59.994 43.478 15.25 0.00 0.00 2.01
2844 5524 4.181578 GTGCATGTACTCTCCGTGTAAAT 58.818 43.478 6.69 0.00 0.00 1.40
2845 5525 4.267928 GTGCATGTACTCTCCGTGTAAATC 59.732 45.833 6.69 0.00 0.00 2.17
2846 5526 4.159693 TGCATGTACTCTCCGTGTAAATCT 59.840 41.667 0.00 0.00 0.00 2.40
2847 5527 4.504461 GCATGTACTCTCCGTGTAAATCTG 59.496 45.833 0.00 0.00 0.00 2.90
2848 5528 4.106029 TGTACTCTCCGTGTAAATCTGC 57.894 45.455 0.00 0.00 0.00 4.26
2849 5529 2.674796 ACTCTCCGTGTAAATCTGCC 57.325 50.000 0.00 0.00 0.00 4.85
2850 5530 2.180276 ACTCTCCGTGTAAATCTGCCT 58.820 47.619 0.00 0.00 0.00 4.75
2851 5531 2.166664 ACTCTCCGTGTAAATCTGCCTC 59.833 50.000 0.00 0.00 0.00 4.70
2852 5532 1.480954 TCTCCGTGTAAATCTGCCTCC 59.519 52.381 0.00 0.00 0.00 4.30
2853 5533 1.482593 CTCCGTGTAAATCTGCCTCCT 59.517 52.381 0.00 0.00 0.00 3.69
2854 5534 2.693591 CTCCGTGTAAATCTGCCTCCTA 59.306 50.000 0.00 0.00 0.00 2.94
2855 5535 2.693591 TCCGTGTAAATCTGCCTCCTAG 59.306 50.000 0.00 0.00 0.00 3.02
2856 5536 2.224066 CCGTGTAAATCTGCCTCCTAGG 60.224 54.545 0.82 0.82 38.80 3.02
2857 5537 2.693591 CGTGTAAATCTGCCTCCTAGGA 59.306 50.000 11.98 11.98 37.67 2.94
2858 5538 3.243569 CGTGTAAATCTGCCTCCTAGGAG 60.244 52.174 29.27 29.27 37.67 3.69
2871 5551 5.024785 CTCCTAGGAGGATTGTACCAAAC 57.975 47.826 28.68 0.00 44.81 2.93
2872 5552 3.778629 TCCTAGGAGGATTGTACCAAACC 59.221 47.826 7.62 0.00 40.06 3.27
2873 5553 3.118000 CCTAGGAGGATTGTACCAAACCC 60.118 52.174 1.05 0.00 37.67 4.11
2874 5554 1.639108 AGGAGGATTGTACCAAACCCC 59.361 52.381 0.25 2.39 0.00 4.95
2875 5555 1.639108 GGAGGATTGTACCAAACCCCT 59.361 52.381 0.25 0.00 0.00 4.79
2876 5556 2.042569 GGAGGATTGTACCAAACCCCTT 59.957 50.000 0.25 0.00 0.00 3.95
2877 5557 3.353557 GAGGATTGTACCAAACCCCTTC 58.646 50.000 0.25 0.00 0.00 3.46
2878 5558 2.993863 AGGATTGTACCAAACCCCTTCT 59.006 45.455 0.25 0.00 0.00 2.85
2879 5559 3.401342 AGGATTGTACCAAACCCCTTCTT 59.599 43.478 0.25 0.00 0.00 2.52
2880 5560 4.140782 AGGATTGTACCAAACCCCTTCTTT 60.141 41.667 0.25 0.00 0.00 2.52
2881 5561 4.591498 GGATTGTACCAAACCCCTTCTTTT 59.409 41.667 0.00 0.00 0.00 2.27
2882 5562 5.279306 GGATTGTACCAAACCCCTTCTTTTC 60.279 44.000 0.00 0.00 0.00 2.29
2883 5563 4.252570 TGTACCAAACCCCTTCTTTTCA 57.747 40.909 0.00 0.00 0.00 2.69
2884 5564 4.611367 TGTACCAAACCCCTTCTTTTCAA 58.389 39.130 0.00 0.00 0.00 2.69
2885 5565 5.212745 TGTACCAAACCCCTTCTTTTCAAT 58.787 37.500 0.00 0.00 0.00 2.57
2886 5566 4.687901 ACCAAACCCCTTCTTTTCAATG 57.312 40.909 0.00 0.00 0.00 2.82
2887 5567 3.181455 ACCAAACCCCTTCTTTTCAATGC 60.181 43.478 0.00 0.00 0.00 3.56
2888 5568 3.181456 CCAAACCCCTTCTTTTCAATGCA 60.181 43.478 0.00 0.00 0.00 3.96
2889 5569 4.450053 CAAACCCCTTCTTTTCAATGCAA 58.550 39.130 0.00 0.00 0.00 4.08
2890 5570 4.980339 AACCCCTTCTTTTCAATGCAAT 57.020 36.364 0.00 0.00 0.00 3.56
2891 5571 4.276058 ACCCCTTCTTTTCAATGCAATG 57.724 40.909 0.00 0.00 0.00 2.82
2892 5572 3.903090 ACCCCTTCTTTTCAATGCAATGA 59.097 39.130 0.00 0.00 0.00 2.57
2893 5573 4.347583 ACCCCTTCTTTTCAATGCAATGAA 59.652 37.500 13.20 13.20 37.53 2.57
2894 5574 5.163216 ACCCCTTCTTTTCAATGCAATGAAA 60.163 36.000 22.92 22.92 45.07 2.69
2895 5575 5.179929 CCCCTTCTTTTCAATGCAATGAAAC 59.820 40.000 25.73 0.00 46.06 2.78
2896 5576 5.107375 CCCTTCTTTTCAATGCAATGAAACG 60.107 40.000 25.73 23.52 46.06 3.60
2897 5577 4.970472 TCTTTTCAATGCAATGAAACGC 57.030 36.364 25.73 0.00 46.06 4.84
2898 5578 4.366586 TCTTTTCAATGCAATGAAACGCA 58.633 34.783 25.73 13.18 46.06 5.24
2899 5579 4.807834 TCTTTTCAATGCAATGAAACGCAA 59.192 33.333 25.73 12.87 46.06 4.85
2900 5580 5.292834 TCTTTTCAATGCAATGAAACGCAAA 59.707 32.000 25.73 12.54 46.06 3.68
2901 5581 5.475273 TTTCAATGCAATGAAACGCAAAA 57.525 30.435 22.92 2.58 42.68 2.44
2902 5582 4.712191 TCAATGCAATGAAACGCAAAAG 57.288 36.364 0.85 0.00 42.37 2.27
2903 5583 4.118410 TCAATGCAATGAAACGCAAAAGT 58.882 34.783 0.85 0.00 42.37 2.66
2904 5584 4.208873 TCAATGCAATGAAACGCAAAAGTC 59.791 37.500 0.85 0.00 42.37 3.01
2905 5585 3.435105 TGCAATGAAACGCAAAAGTCT 57.565 38.095 0.00 0.00 34.59 3.24
2906 5586 3.779759 TGCAATGAAACGCAAAAGTCTT 58.220 36.364 0.00 0.00 34.59 3.01
2907 5587 4.180057 TGCAATGAAACGCAAAAGTCTTT 58.820 34.783 0.00 0.00 34.59 2.52
2908 5588 4.629200 TGCAATGAAACGCAAAAGTCTTTT 59.371 33.333 4.66 4.66 34.59 2.27
2919 5599 5.041467 CAAAAGTCTTTTGCGTTTTCTCG 57.959 39.130 21.85 0.00 42.91 4.04
2920 5600 4.609691 AAAGTCTTTTGCGTTTTCTCGA 57.390 36.364 0.00 0.00 0.00 4.04
2921 5601 4.609691 AAGTCTTTTGCGTTTTCTCGAA 57.390 36.364 0.00 0.00 0.00 3.71
2922 5602 4.609691 AGTCTTTTGCGTTTTCTCGAAA 57.390 36.364 0.00 0.00 0.00 3.46
2923 5603 4.976987 AGTCTTTTGCGTTTTCTCGAAAA 58.023 34.783 0.93 0.93 36.69 2.29
2924 5604 5.395642 AGTCTTTTGCGTTTTCTCGAAAAA 58.604 33.333 6.41 5.17 43.26 1.94
3058 5738 1.478105 ACTGCATCGCTGTACAGATCA 59.522 47.619 27.08 13.37 38.85 2.92
3107 5787 3.345508 AGAGCATGCTGACAATCTTCA 57.654 42.857 28.27 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.725844 ACCAAGTCAGAAAAATAGGAACTCAAT 59.274 33.333 0.00 0.00 41.75 2.57
43 44 8.614469 AAAAATTGTTGACCAAGTCAGAAAAA 57.386 26.923 0.00 0.00 43.69 1.94
48 49 6.237542 CGTTGAAAAATTGTTGACCAAGTCAG 60.238 38.462 0.00 0.00 43.69 3.51
60 61 6.677781 TGAGAGAGTTCGTTGAAAAATTGT 57.322 33.333 0.00 0.00 0.00 2.71
67 68 5.463392 CACTTGAATGAGAGAGTTCGTTGAA 59.537 40.000 0.00 0.00 0.00 2.69
82 83 9.748708 TTCAAAATTTAGAACCTCACTTGAATG 57.251 29.630 0.00 0.00 0.00 2.67
87 88 9.546428 CCAAATTCAAAATTTAGAACCTCACTT 57.454 29.630 0.00 0.00 0.00 3.16
127 128 9.383519 GGATTGATTTGAGTAGTCATTGACTTA 57.616 33.333 23.53 8.01 40.28 2.24
129 130 6.536582 CGGATTGATTTGAGTAGTCATTGACT 59.463 38.462 22.16 22.16 45.54 3.41
130 131 6.709643 CGGATTGATTTGAGTAGTCATTGAC 58.290 40.000 8.82 8.82 30.85 3.18
138 139 4.944962 TGTTGCGGATTGATTTGAGTAG 57.055 40.909 0.00 0.00 0.00 2.57
139 140 4.083003 GGTTGTTGCGGATTGATTTGAGTA 60.083 41.667 0.00 0.00 0.00 2.59
140 141 3.305335 GGTTGTTGCGGATTGATTTGAGT 60.305 43.478 0.00 0.00 0.00 3.41
174 177 0.247736 GAGGGTGCGAGACTGATGTT 59.752 55.000 0.00 0.00 0.00 2.71
209 212 1.139853 GGTGTCCCATGTTGGCAAAAA 59.860 47.619 0.00 0.00 35.79 1.94
210 213 0.755686 GGTGTCCCATGTTGGCAAAA 59.244 50.000 0.00 0.00 35.79 2.44
211 214 0.397675 TGGTGTCCCATGTTGGCAAA 60.398 50.000 0.00 0.00 35.79 3.68
212 215 1.231355 TGGTGTCCCATGTTGGCAA 59.769 52.632 0.00 0.00 35.79 4.52
222 225 2.143876 AATTGGTGCTATGGTGTCCC 57.856 50.000 0.00 0.00 0.00 4.46
223 226 5.825679 TGTATTAATTGGTGCTATGGTGTCC 59.174 40.000 0.00 0.00 0.00 4.02
229 232 7.013178 TGACCACATGTATTAATTGGTGCTATG 59.987 37.037 12.47 2.49 40.75 2.23
230 233 7.013274 GTGACCACATGTATTAATTGGTGCTAT 59.987 37.037 12.47 0.00 40.75 2.97
236 239 6.773976 AAGGTGACCACATGTATTAATTGG 57.226 37.500 3.63 0.00 0.00 3.16
254 258 4.402474 ACAGGGAAGTTTCTTGAAAAGGTG 59.598 41.667 0.00 0.00 46.24 4.00
256 260 6.901081 ATACAGGGAAGTTTCTTGAAAAGG 57.099 37.500 0.00 0.00 46.24 3.11
258 262 8.792633 CATGTATACAGGGAAGTTTCTTGAAAA 58.207 33.333 11.91 0.00 0.00 2.29
259 263 7.942341 ACATGTATACAGGGAAGTTTCTTGAAA 59.058 33.333 20.64 0.00 30.95 2.69
261 265 6.878923 CACATGTATACAGGGAAGTTTCTTGA 59.121 38.462 20.64 0.00 30.95 3.02
274 278 6.784176 TGCAAATTAGCACACATGTATACAG 58.216 36.000 11.91 6.29 40.11 2.74
277 281 7.806409 ATCTGCAAATTAGCACACATGTATA 57.194 32.000 0.00 0.00 40.11 1.47
281 285 6.324042 TGTTATCTGCAAATTAGCACACATG 58.676 36.000 0.00 0.00 40.11 3.21
282 286 6.513806 TGTTATCTGCAAATTAGCACACAT 57.486 33.333 0.00 0.00 40.11 3.21
306 310 9.629649 ATGGTCTCTTTCTGGGGTATAATTATA 57.370 33.333 0.81 0.81 0.00 0.98
319 323 6.430925 TGTGGTATTTTGATGGTCTCTTTCTG 59.569 38.462 0.00 0.00 0.00 3.02
362 366 3.118075 TGTGTCTGTGGAAGATGGTGAAA 60.118 43.478 0.00 0.00 37.23 2.69
363 367 2.437651 TGTGTCTGTGGAAGATGGTGAA 59.562 45.455 0.00 0.00 37.23 3.18
364 368 2.046292 TGTGTCTGTGGAAGATGGTGA 58.954 47.619 0.00 0.00 37.23 4.02
366 370 1.072331 GGTGTGTCTGTGGAAGATGGT 59.928 52.381 0.00 0.00 37.23 3.55
367 371 1.813513 GGTGTGTCTGTGGAAGATGG 58.186 55.000 0.00 0.00 37.23 3.51
372 376 2.244695 AGTATCGGTGTGTCTGTGGAA 58.755 47.619 0.00 0.00 0.00 3.53
399 403 6.534436 CAGTTGATGTTGTTGGTTTTTCATCA 59.466 34.615 0.00 0.00 39.46 3.07
400 404 6.534793 ACAGTTGATGTTGTTGGTTTTTCATC 59.465 34.615 0.00 0.00 39.96 2.92
402 406 5.636965 CACAGTTGATGTTGTTGGTTTTTCA 59.363 36.000 0.00 0.00 41.41 2.69
403 407 5.445806 GCACAGTTGATGTTGTTGGTTTTTC 60.446 40.000 0.00 0.00 41.41 2.29
404 408 4.391523 GCACAGTTGATGTTGTTGGTTTTT 59.608 37.500 0.00 0.00 41.41 1.94
405 409 3.932089 GCACAGTTGATGTTGTTGGTTTT 59.068 39.130 0.00 0.00 41.41 2.43
406 410 3.056250 TGCACAGTTGATGTTGTTGGTTT 60.056 39.130 0.00 0.00 41.41 3.27
407 411 2.495270 TGCACAGTTGATGTTGTTGGTT 59.505 40.909 0.00 0.00 41.41 3.67
410 414 2.121786 GCTGCACAGTTGATGTTGTTG 58.878 47.619 0.00 0.00 41.41 3.33
411 415 1.268692 CGCTGCACAGTTGATGTTGTT 60.269 47.619 0.00 0.00 41.41 2.83
412 416 0.308684 CGCTGCACAGTTGATGTTGT 59.691 50.000 0.00 0.00 41.41 3.32
413 417 0.308684 ACGCTGCACAGTTGATGTTG 59.691 50.000 0.00 0.00 41.41 3.33
414 418 1.800586 CTACGCTGCACAGTTGATGTT 59.199 47.619 0.00 0.00 41.41 2.71
415 419 1.432514 CTACGCTGCACAGTTGATGT 58.567 50.000 0.00 0.00 45.43 3.06
416 420 0.095935 GCTACGCTGCACAGTTGATG 59.904 55.000 0.00 0.00 0.00 3.07
417 421 1.354337 CGCTACGCTGCACAGTTGAT 61.354 55.000 0.00 0.00 0.00 2.57
418 422 2.021584 CGCTACGCTGCACAGTTGA 61.022 57.895 0.00 0.00 0.00 3.18
419 423 2.471607 CGCTACGCTGCACAGTTG 59.528 61.111 0.00 0.00 0.00 3.16
431 435 2.311124 AGAAGTATTGGGTGCGCTAC 57.689 50.000 9.73 5.08 0.00 3.58
432 436 3.028850 ACTAGAAGTATTGGGTGCGCTA 58.971 45.455 9.73 0.00 0.00 4.26
434 438 1.933853 CACTAGAAGTATTGGGTGCGC 59.066 52.381 0.00 0.00 0.00 6.09
435 439 3.520290 TCACTAGAAGTATTGGGTGCG 57.480 47.619 0.00 0.00 0.00 5.34
436 440 6.759497 AAATTCACTAGAAGTATTGGGTGC 57.241 37.500 0.00 0.00 37.14 5.01
473 477 9.905171 TCGAATTCAATCAAAAACATGAATACA 57.095 25.926 6.22 0.00 40.58 2.29
475 479 9.571810 CCTCGAATTCAATCAAAAACATGAATA 57.428 29.630 6.22 0.00 40.58 1.75
476 480 8.090214 ACCTCGAATTCAATCAAAAACATGAAT 58.910 29.630 6.22 0.00 42.61 2.57
477 481 7.432869 ACCTCGAATTCAATCAAAAACATGAA 58.567 30.769 6.22 0.00 36.35 2.57
478 482 6.980593 ACCTCGAATTCAATCAAAAACATGA 58.019 32.000 6.22 0.00 0.00 3.07
479 483 7.642071 AACCTCGAATTCAATCAAAAACATG 57.358 32.000 6.22 0.00 0.00 3.21
480 484 8.661352 AAAACCTCGAATTCAATCAAAAACAT 57.339 26.923 6.22 0.00 0.00 2.71
481 485 9.587772 TTAAAACCTCGAATTCAATCAAAAACA 57.412 25.926 6.22 0.00 0.00 2.83
503 507 9.874205 CCAGCAATCAGAATCCTTATTTTTAAA 57.126 29.630 0.00 0.00 0.00 1.52
504 508 8.477256 CCCAGCAATCAGAATCCTTATTTTTAA 58.523 33.333 0.00 0.00 0.00 1.52
505 509 7.619302 ACCCAGCAATCAGAATCCTTATTTTTA 59.381 33.333 0.00 0.00 0.00 1.52
507 511 5.960202 ACCCAGCAATCAGAATCCTTATTTT 59.040 36.000 0.00 0.00 0.00 1.82
508 512 5.522641 ACCCAGCAATCAGAATCCTTATTT 58.477 37.500 0.00 0.00 0.00 1.40
509 513 5.134725 ACCCAGCAATCAGAATCCTTATT 57.865 39.130 0.00 0.00 0.00 1.40
510 514 4.723309 GACCCAGCAATCAGAATCCTTAT 58.277 43.478 0.00 0.00 0.00 1.73
512 516 2.681976 CGACCCAGCAATCAGAATCCTT 60.682 50.000 0.00 0.00 0.00 3.36
514 518 1.303309 CGACCCAGCAATCAGAATCC 58.697 55.000 0.00 0.00 0.00 3.01
515 519 1.134401 TCCGACCCAGCAATCAGAATC 60.134 52.381 0.00 0.00 0.00 2.52
519 523 0.107508 ATGTCCGACCCAGCAATCAG 60.108 55.000 0.00 0.00 0.00 2.90
520 524 1.134521 GTATGTCCGACCCAGCAATCA 60.135 52.381 0.00 0.00 0.00 2.57
522 526 0.908910 TGTATGTCCGACCCAGCAAT 59.091 50.000 0.00 0.00 0.00 3.56
525 529 1.153429 GGTGTATGTCCGACCCAGC 60.153 63.158 0.00 0.00 0.00 4.85
527 531 1.879737 CGTGGTGTATGTCCGACCCA 61.880 60.000 0.00 0.00 0.00 4.51
528 532 1.153706 CGTGGTGTATGTCCGACCC 60.154 63.158 0.00 0.00 0.00 4.46
529 533 0.457337 GACGTGGTGTATGTCCGACC 60.457 60.000 0.00 0.00 39.03 4.79
530 534 3.025866 GACGTGGTGTATGTCCGAC 57.974 57.895 0.00 0.00 39.03 4.79
547 551 7.014326 GGCATTATATATGTCTATGTCTCGGGA 59.986 40.741 0.00 0.00 0.00 5.14
548 552 7.014711 AGGCATTATATATGTCTATGTCTCGGG 59.985 40.741 0.00 0.00 31.35 5.14
549 553 7.864882 CAGGCATTATATATGTCTATGTCTCGG 59.135 40.741 0.00 0.00 31.99 4.63
550 554 8.409371 ACAGGCATTATATATGTCTATGTCTCG 58.591 37.037 0.00 0.67 31.99 4.04
553 557 9.025020 CGAACAGGCATTATATATGTCTATGTC 57.975 37.037 0.00 0.00 31.99 3.06
554 558 8.749354 TCGAACAGGCATTATATATGTCTATGT 58.251 33.333 0.00 0.00 31.99 2.29
555 559 9.586435 TTCGAACAGGCATTATATATGTCTATG 57.414 33.333 0.00 0.00 31.99 2.23
557 561 9.419297 GTTTCGAACAGGCATTATATATGTCTA 57.581 33.333 0.00 0.00 31.99 2.59
558 562 7.387948 GGTTTCGAACAGGCATTATATATGTCT 59.612 37.037 0.00 0.00 33.72 3.41
559 563 7.387948 AGGTTTCGAACAGGCATTATATATGTC 59.612 37.037 0.00 0.00 0.00 3.06
560 564 7.224297 AGGTTTCGAACAGGCATTATATATGT 58.776 34.615 0.00 0.00 0.00 2.29
561 565 7.604164 AGAGGTTTCGAACAGGCATTATATATG 59.396 37.037 0.00 0.00 0.00 1.78
562 566 7.680730 AGAGGTTTCGAACAGGCATTATATAT 58.319 34.615 0.00 0.00 0.00 0.86
564 568 5.930135 AGAGGTTTCGAACAGGCATTATAT 58.070 37.500 0.00 0.00 0.00 0.86
565 569 5.353394 AGAGGTTTCGAACAGGCATTATA 57.647 39.130 0.00 0.00 0.00 0.98
566 570 4.222124 AGAGGTTTCGAACAGGCATTAT 57.778 40.909 0.00 0.00 0.00 1.28
568 572 2.568623 AGAGGTTTCGAACAGGCATT 57.431 45.000 0.00 0.00 0.00 3.56
569 573 2.224523 TGAAGAGGTTTCGAACAGGCAT 60.225 45.455 0.00 0.00 0.00 4.40
571 575 1.801178 CTGAAGAGGTTTCGAACAGGC 59.199 52.381 0.00 0.00 0.00 4.85
572 576 3.060602 GACTGAAGAGGTTTCGAACAGG 58.939 50.000 12.54 0.00 31.86 4.00
573 577 2.726760 CGACTGAAGAGGTTTCGAACAG 59.273 50.000 0.00 2.53 0.00 3.16
574 578 2.739292 CGACTGAAGAGGTTTCGAACA 58.261 47.619 0.00 0.00 0.00 3.18
575 579 1.456165 GCGACTGAAGAGGTTTCGAAC 59.544 52.381 0.00 0.00 0.00 3.95
578 582 0.386858 TCGCGACTGAAGAGGTTTCG 60.387 55.000 3.71 0.00 0.00 3.46
580 584 1.865340 GTTTCGCGACTGAAGAGGTTT 59.135 47.619 9.15 0.00 0.00 3.27
581 585 1.068741 AGTTTCGCGACTGAAGAGGTT 59.931 47.619 9.15 0.00 0.00 3.50
583 587 1.341606 GAGTTTCGCGACTGAAGAGG 58.658 55.000 9.15 0.00 0.00 3.69
584 588 1.335964 TGGAGTTTCGCGACTGAAGAG 60.336 52.381 9.15 0.00 0.00 2.85
585 589 0.671796 TGGAGTTTCGCGACTGAAGA 59.328 50.000 9.15 0.00 0.00 2.87
586 590 0.784778 GTGGAGTTTCGCGACTGAAG 59.215 55.000 9.15 0.00 0.00 3.02
587 591 0.387929 AGTGGAGTTTCGCGACTGAA 59.612 50.000 9.15 0.00 0.00 3.02
588 592 0.039437 GAGTGGAGTTTCGCGACTGA 60.039 55.000 9.15 0.00 0.00 3.41
589 593 1.009389 GGAGTGGAGTTTCGCGACTG 61.009 60.000 9.15 0.00 0.00 3.51
591 595 2.087009 CGGAGTGGAGTTTCGCGAC 61.087 63.158 9.15 0.00 0.00 5.19
592 596 2.257371 CGGAGTGGAGTTTCGCGA 59.743 61.111 3.71 3.71 0.00 5.87
593 597 3.479269 GCGGAGTGGAGTTTCGCG 61.479 66.667 0.00 0.00 37.12 5.87
595 599 3.479269 GCGCGGAGTGGAGTTTCG 61.479 66.667 8.83 0.00 39.19 3.46
596 600 3.479269 CGCGCGGAGTGGAGTTTC 61.479 66.667 24.84 0.00 39.19 2.78
598 602 4.421479 CTCGCGCGGAGTGGAGTT 62.421 66.667 31.69 0.00 38.02 3.01
608 612 4.785512 AACAGAGCTCCTCGCGCG 62.786 66.667 26.76 26.76 43.79 6.86
610 614 2.578178 CGAACAGAGCTCCTCGCG 60.578 66.667 10.93 0.00 45.59 5.87
620 624 1.228894 AGGGAGTGGCTCGAACAGA 60.229 57.895 0.00 0.00 0.00 3.41
622 626 2.283529 GGAGGGAGTGGCTCGAACA 61.284 63.158 0.00 0.00 0.00 3.18
623 627 2.579738 GGAGGGAGTGGCTCGAAC 59.420 66.667 0.00 0.00 0.00 3.95
624 628 3.068691 CGGAGGGAGTGGCTCGAA 61.069 66.667 0.00 0.00 0.00 3.71
627 631 3.378399 GAAGCGGAGGGAGTGGCTC 62.378 68.421 0.00 0.00 33.99 4.70
629 633 4.821589 CGAAGCGGAGGGAGTGGC 62.822 72.222 0.00 0.00 0.00 5.01
642 646 1.302033 ACAACTGCAGCTCCCGAAG 60.302 57.895 15.27 0.00 0.00 3.79
643 647 1.597854 CACAACTGCAGCTCCCGAA 60.598 57.895 15.27 0.00 0.00 4.30
644 648 2.031012 CACAACTGCAGCTCCCGA 59.969 61.111 15.27 0.00 0.00 5.14
645 649 3.052082 CCACAACTGCAGCTCCCG 61.052 66.667 15.27 0.00 0.00 5.14
646 650 1.673665 CTCCACAACTGCAGCTCCC 60.674 63.158 15.27 0.00 0.00 4.30
647 651 2.331132 GCTCCACAACTGCAGCTCC 61.331 63.158 15.27 0.00 0.00 4.70
648 652 2.675056 CGCTCCACAACTGCAGCTC 61.675 63.158 15.27 0.00 0.00 4.09
649 653 2.665008 TTCGCTCCACAACTGCAGCT 62.665 55.000 15.27 0.00 0.00 4.24
650 654 2.180131 CTTCGCTCCACAACTGCAGC 62.180 60.000 15.27 0.00 0.00 5.25
653 657 1.294659 CCTCTTCGCTCCACAACTGC 61.295 60.000 0.00 0.00 0.00 4.40
654 658 0.318441 TCCTCTTCGCTCCACAACTG 59.682 55.000 0.00 0.00 0.00 3.16
655 659 1.205893 GATCCTCTTCGCTCCACAACT 59.794 52.381 0.00 0.00 0.00 3.16
656 660 1.646189 GATCCTCTTCGCTCCACAAC 58.354 55.000 0.00 0.00 0.00 3.32
657 661 0.537188 GGATCCTCTTCGCTCCACAA 59.463 55.000 3.84 0.00 0.00 3.33
658 662 1.667154 CGGATCCTCTTCGCTCCACA 61.667 60.000 10.75 0.00 0.00 4.17
659 663 1.066587 CGGATCCTCTTCGCTCCAC 59.933 63.158 10.75 0.00 0.00 4.02
660 664 0.683179 TTCGGATCCTCTTCGCTCCA 60.683 55.000 10.75 0.00 0.00 3.86
661 665 0.249114 GTTCGGATCCTCTTCGCTCC 60.249 60.000 10.75 0.00 0.00 4.70
663 667 0.457851 CTGTTCGGATCCTCTTCGCT 59.542 55.000 10.75 0.00 0.00 4.93
664 668 0.528684 CCTGTTCGGATCCTCTTCGC 60.529 60.000 10.75 0.00 33.16 4.70
665 669 0.103208 CCCTGTTCGGATCCTCTTCG 59.897 60.000 10.75 0.00 33.16 3.79
666 670 0.179070 GCCCTGTTCGGATCCTCTTC 60.179 60.000 10.75 0.00 33.16 2.87
668 672 2.066999 GGCCCTGTTCGGATCCTCT 61.067 63.158 10.75 0.00 33.16 3.69
669 673 1.910580 TTGGCCCTGTTCGGATCCTC 61.911 60.000 10.75 0.86 33.16 3.71
670 674 1.281925 ATTGGCCCTGTTCGGATCCT 61.282 55.000 10.75 0.00 33.16 3.24
672 676 1.103398 CCATTGGCCCTGTTCGGATC 61.103 60.000 0.00 0.00 33.16 3.36
673 677 1.076777 CCATTGGCCCTGTTCGGAT 60.077 57.895 0.00 0.00 33.16 4.18
674 678 2.354729 CCATTGGCCCTGTTCGGA 59.645 61.111 0.00 0.00 33.16 4.55
694 698 5.874810 CGGATAAATGTGACCCCATACTATG 59.125 44.000 0.00 0.00 0.00 2.23
695 699 5.045869 CCGGATAAATGTGACCCCATACTAT 60.046 44.000 0.00 0.00 0.00 2.12
696 700 4.285003 CCGGATAAATGTGACCCCATACTA 59.715 45.833 0.00 0.00 0.00 1.82
698 702 3.181448 ACCGGATAAATGTGACCCCATAC 60.181 47.826 9.46 0.00 0.00 2.39
699 703 3.050089 ACCGGATAAATGTGACCCCATA 58.950 45.455 9.46 0.00 0.00 2.74
700 704 1.850345 ACCGGATAAATGTGACCCCAT 59.150 47.619 9.46 0.00 0.00 4.00
703 707 1.808891 CGGACCGGATAAATGTGACCC 60.809 57.143 9.46 0.00 0.00 4.46
704 708 1.578583 CGGACCGGATAAATGTGACC 58.421 55.000 9.46 0.00 0.00 4.02
718 722 1.313091 GGAGCATTTCCAACCGGACC 61.313 60.000 9.46 0.00 46.01 4.46
732 736 1.271982 ACAGACCTCTTACTCGGAGCA 60.272 52.381 4.58 0.00 0.00 4.26
747 751 6.595772 AAGATCGAGCAAATTGATACAGAC 57.404 37.500 2.38 0.00 31.64 3.51
845 1151 5.219633 CGTGGTTATTTCTTTGGTCAAAGG 58.780 41.667 19.48 5.46 45.80 3.11
949 1313 2.730402 GCGGAAGAGACGGTACTTGTAC 60.730 54.545 2.55 2.55 0.00 2.90
1119 1717 2.206223 AGGTTAGGATTTGGGAGGGAC 58.794 52.381 0.00 0.00 0.00 4.46
1257 1861 2.203379 TCCGACAGGACGTCCACA 60.203 61.111 35.00 9.95 42.75 4.17
1524 2405 2.187946 CCGACCAGCACCATCTCC 59.812 66.667 0.00 0.00 0.00 3.71
1650 2539 4.660938 ACGAACCCAAGGGCTGCC 62.661 66.667 11.05 11.05 39.32 4.85
1845 2734 1.585521 GAGTATGCCGGACACGTCG 60.586 63.158 5.05 0.00 38.78 5.12
1884 2868 2.832838 TCAATCTCCTTCACCAGGCTA 58.167 47.619 0.00 0.00 43.55 3.93
1941 2925 1.308657 TATCATGCCCCCACCCACT 60.309 57.895 0.00 0.00 0.00 4.00
2155 4118 1.134907 GCCACAAATGAGGGATGCAAG 60.135 52.381 0.00 0.00 0.00 4.01
2198 4162 6.694447 CAATCTTTCACCATTCCTTGTTCAT 58.306 36.000 0.00 0.00 0.00 2.57
2282 4919 4.907010 GCGAGTAGTTTCAGACGATAGATG 59.093 45.833 0.00 0.00 41.38 2.90
2353 4990 4.163268 TCAATGGGGATTCTTCATCGTGTA 59.837 41.667 0.00 0.00 31.73 2.90
2404 5042 9.360093 TGTTGTAAAGGTATTGTTTGTTTTGAG 57.640 29.630 0.00 0.00 0.00 3.02
2502 5181 4.983538 TGCAAGATTTCTACGAACACGTTA 59.016 37.500 0.00 0.00 40.72 3.18
2648 5327 0.750249 CCCCCGAATTTACATTGCCC 59.250 55.000 0.00 0.00 0.00 5.36
2747 5427 0.968405 TCTTGCCCAGGTTTTCATGC 59.032 50.000 0.00 0.00 0.00 4.06
2748 5428 1.067354 GCTCTTGCCCAGGTTTTCATG 60.067 52.381 0.00 0.00 0.00 3.07
2749 5429 1.203100 AGCTCTTGCCCAGGTTTTCAT 60.203 47.619 0.00 0.00 40.80 2.57
2750 5430 0.185901 AGCTCTTGCCCAGGTTTTCA 59.814 50.000 0.00 0.00 40.80 2.69
2751 5431 0.600057 CAGCTCTTGCCCAGGTTTTC 59.400 55.000 0.00 0.00 40.80 2.29
2752 5432 0.829182 CCAGCTCTTGCCCAGGTTTT 60.829 55.000 0.00 0.00 40.80 2.43
2753 5433 1.228675 CCAGCTCTTGCCCAGGTTT 60.229 57.895 0.00 0.00 40.80 3.27
2754 5434 2.437897 CCAGCTCTTGCCCAGGTT 59.562 61.111 0.00 0.00 40.80 3.50
2755 5435 4.357279 GCCAGCTCTTGCCCAGGT 62.357 66.667 0.00 0.00 40.80 4.00
2760 5440 3.446570 AATGCGCCAGCTCTTGCC 61.447 61.111 4.18 0.00 45.42 4.52
2761 5441 2.202570 CAATGCGCCAGCTCTTGC 60.203 61.111 4.18 0.00 45.42 4.01
2762 5442 2.488355 CCAATGCGCCAGCTCTTG 59.512 61.111 4.18 0.00 45.42 3.02
2763 5443 2.753043 CCCAATGCGCCAGCTCTT 60.753 61.111 4.18 0.00 45.42 2.85
2764 5444 4.809496 CCCCAATGCGCCAGCTCT 62.809 66.667 4.18 0.00 45.42 4.09
2788 5468 0.037975 CAGGTTTGTGGCAAGATGGC 60.038 55.000 0.00 0.00 44.03 4.40
2789 5469 0.604578 CCAGGTTTGTGGCAAGATGG 59.395 55.000 0.00 0.00 0.00 3.51
2790 5470 0.604578 CCCAGGTTTGTGGCAAGATG 59.395 55.000 0.00 0.00 36.11 2.90
2791 5471 0.482446 TCCCAGGTTTGTGGCAAGAT 59.518 50.000 0.00 0.00 36.11 2.40
2792 5472 0.482446 ATCCCAGGTTTGTGGCAAGA 59.518 50.000 0.00 0.00 36.11 3.02
2793 5473 0.604578 CATCCCAGGTTTGTGGCAAG 59.395 55.000 0.00 0.00 36.11 4.01
2794 5474 0.105760 ACATCCCAGGTTTGTGGCAA 60.106 50.000 0.00 0.00 36.11 4.52
2795 5475 0.539438 GACATCCCAGGTTTGTGGCA 60.539 55.000 0.00 0.00 36.11 4.92
2796 5476 1.250840 GGACATCCCAGGTTTGTGGC 61.251 60.000 0.00 0.00 36.11 5.01
2797 5477 0.112218 TGGACATCCCAGGTTTGTGG 59.888 55.000 0.00 0.00 40.82 4.17
2798 5478 3.743714 TGGACATCCCAGGTTTGTG 57.256 52.632 0.00 0.00 40.82 3.33
2806 5486 1.632920 TGCACATTAGTGGACATCCCA 59.367 47.619 0.00 0.00 45.98 4.37
2807 5487 2.418368 TGCACATTAGTGGACATCCC 57.582 50.000 0.00 0.00 45.98 3.85
2814 5494 4.122776 GGAGAGTACATGCACATTAGTGG 58.877 47.826 0.00 0.00 45.98 4.00
2815 5495 9.694018 TACACGGAGAGTACATGCACATTAGTG 62.694 44.444 0.00 4.85 39.60 2.74
2816 5496 3.447586 ACGGAGAGTACATGCACATTAGT 59.552 43.478 0.00 0.00 0.00 2.24
2817 5497 3.798878 CACGGAGAGTACATGCACATTAG 59.201 47.826 0.00 0.00 0.00 1.73
2818 5498 3.194755 ACACGGAGAGTACATGCACATTA 59.805 43.478 0.00 0.00 0.00 1.90
2819 5499 2.028112 ACACGGAGAGTACATGCACATT 60.028 45.455 0.00 0.00 0.00 2.71
2820 5500 1.550524 ACACGGAGAGTACATGCACAT 59.449 47.619 0.00 0.00 0.00 3.21
2821 5501 0.966179 ACACGGAGAGTACATGCACA 59.034 50.000 0.00 0.00 0.00 4.57
2822 5502 2.933495 TACACGGAGAGTACATGCAC 57.067 50.000 0.00 0.00 31.14 4.57
2823 5503 3.945981 TTTACACGGAGAGTACATGCA 57.054 42.857 0.00 0.00 32.43 3.96
2824 5504 4.504461 CAGATTTACACGGAGAGTACATGC 59.496 45.833 0.00 0.00 32.43 4.06
2825 5505 4.504461 GCAGATTTACACGGAGAGTACATG 59.496 45.833 0.00 0.00 32.43 3.21
2826 5506 4.441634 GGCAGATTTACACGGAGAGTACAT 60.442 45.833 0.00 0.00 32.43 2.29
2827 5507 3.119245 GGCAGATTTACACGGAGAGTACA 60.119 47.826 0.00 0.00 32.43 2.90
2828 5508 3.130693 AGGCAGATTTACACGGAGAGTAC 59.869 47.826 0.00 0.00 32.43 2.73
2829 5509 3.362706 AGGCAGATTTACACGGAGAGTA 58.637 45.455 0.00 0.00 31.14 2.59
2830 5510 2.166664 GAGGCAGATTTACACGGAGAGT 59.833 50.000 0.00 0.00 34.44 3.24
2831 5511 2.482142 GGAGGCAGATTTACACGGAGAG 60.482 54.545 0.00 0.00 0.00 3.20
2832 5512 1.480954 GGAGGCAGATTTACACGGAGA 59.519 52.381 0.00 0.00 0.00 3.71
2833 5513 1.482593 AGGAGGCAGATTTACACGGAG 59.517 52.381 0.00 0.00 0.00 4.63
2834 5514 1.568504 AGGAGGCAGATTTACACGGA 58.431 50.000 0.00 0.00 0.00 4.69
2835 5515 2.224066 CCTAGGAGGCAGATTTACACGG 60.224 54.545 1.05 0.00 0.00 4.94
2836 5516 2.693591 TCCTAGGAGGCAGATTTACACG 59.306 50.000 7.62 0.00 34.61 4.49
2837 5517 4.329462 CTCCTAGGAGGCAGATTTACAC 57.671 50.000 28.68 0.00 38.51 2.90
2862 5542 4.252570 TGAAAAGAAGGGGTTTGGTACA 57.747 40.909 0.00 0.00 0.00 2.90
2863 5543 5.538118 CATTGAAAAGAAGGGGTTTGGTAC 58.462 41.667 0.00 0.00 0.00 3.34
2864 5544 4.039852 GCATTGAAAAGAAGGGGTTTGGTA 59.960 41.667 0.00 0.00 0.00 3.25
2865 5545 3.181455 GCATTGAAAAGAAGGGGTTTGGT 60.181 43.478 0.00 0.00 0.00 3.67
2866 5546 3.181456 TGCATTGAAAAGAAGGGGTTTGG 60.181 43.478 0.00 0.00 0.00 3.28
2867 5547 4.070630 TGCATTGAAAAGAAGGGGTTTG 57.929 40.909 0.00 0.00 0.00 2.93
2868 5548 4.769345 TTGCATTGAAAAGAAGGGGTTT 57.231 36.364 0.00 0.00 0.00 3.27
2869 5549 4.347583 TCATTGCATTGAAAAGAAGGGGTT 59.652 37.500 8.80 0.00 0.00 4.11
2870 5550 3.903090 TCATTGCATTGAAAAGAAGGGGT 59.097 39.130 8.80 0.00 0.00 4.95
2871 5551 4.540359 TCATTGCATTGAAAAGAAGGGG 57.460 40.909 8.80 0.00 0.00 4.79
2872 5552 5.107375 CGTTTCATTGCATTGAAAAGAAGGG 60.107 40.000 29.80 16.45 44.71 3.95
2873 5553 5.613142 GCGTTTCATTGCATTGAAAAGAAGG 60.613 40.000 33.98 21.75 44.71 3.46
2874 5554 5.050904 TGCGTTTCATTGCATTGAAAAGAAG 60.051 36.000 33.98 25.06 44.71 2.85
2875 5555 4.807834 TGCGTTTCATTGCATTGAAAAGAA 59.192 33.333 33.98 27.60 44.71 2.52
2876 5556 4.366586 TGCGTTTCATTGCATTGAAAAGA 58.633 34.783 33.98 23.14 44.71 2.52
2877 5557 4.712191 TGCGTTTCATTGCATTGAAAAG 57.288 36.364 29.50 29.50 44.71 2.27
2878 5558 5.475273 TTTGCGTTTCATTGCATTGAAAA 57.525 30.435 28.82 16.62 44.71 2.29
2879 5559 5.064452 ACTTTTGCGTTTCATTGCATTGAAA 59.936 32.000 25.34 25.34 41.92 2.69
2880 5560 4.569966 ACTTTTGCGTTTCATTGCATTGAA 59.430 33.333 17.74 17.74 41.42 2.69
2881 5561 4.118410 ACTTTTGCGTTTCATTGCATTGA 58.882 34.783 7.19 7.19 41.42 2.57
2882 5562 4.209703 AGACTTTTGCGTTTCATTGCATTG 59.790 37.500 2.08 2.08 41.42 2.82
2883 5563 4.370917 AGACTTTTGCGTTTCATTGCATT 58.629 34.783 0.00 0.00 41.42 3.56
2884 5564 3.981211 AGACTTTTGCGTTTCATTGCAT 58.019 36.364 0.00 0.00 41.42 3.96
2885 5565 3.435105 AGACTTTTGCGTTTCATTGCA 57.565 38.095 0.00 0.00 39.81 4.08
2886 5566 4.777140 AAAGACTTTTGCGTTTCATTGC 57.223 36.364 0.00 0.00 0.00 3.56
2897 5577 7.618343 TTTTCGAGAAAACGCAAAAGACTTTTG 60.618 33.333 28.69 28.69 42.16 2.44
2898 5578 4.976987 TCGAGAAAACGCAAAAGACTTTT 58.023 34.783 7.38 7.38 0.00 2.27
2899 5579 4.609691 TCGAGAAAACGCAAAAGACTTT 57.390 36.364 0.00 0.00 0.00 2.66
2900 5580 4.609691 TTCGAGAAAACGCAAAAGACTT 57.390 36.364 0.00 0.00 0.00 3.01
2901 5581 4.609691 TTTCGAGAAAACGCAAAAGACT 57.390 36.364 0.00 0.00 0.00 3.24
2902 5582 5.674215 TTTTTCGAGAAAACGCAAAAGAC 57.326 34.783 10.18 0.00 39.70 3.01
2924 5604 4.405358 TCAGTGTTTTCATGCCCTCTTTTT 59.595 37.500 0.00 0.00 0.00 1.94
2925 5605 3.960102 TCAGTGTTTTCATGCCCTCTTTT 59.040 39.130 0.00 0.00 0.00 2.27
2926 5606 3.565307 TCAGTGTTTTCATGCCCTCTTT 58.435 40.909 0.00 0.00 0.00 2.52
2927 5607 3.228188 TCAGTGTTTTCATGCCCTCTT 57.772 42.857 0.00 0.00 0.00 2.85
2928 5608 2.957402 TCAGTGTTTTCATGCCCTCT 57.043 45.000 0.00 0.00 0.00 3.69
2929 5609 4.525912 ATTTCAGTGTTTTCATGCCCTC 57.474 40.909 0.00 0.00 0.00 4.30
2930 5610 4.961438 AATTTCAGTGTTTTCATGCCCT 57.039 36.364 0.00 0.00 0.00 5.19
2931 5611 7.226523 ACTTTAAATTTCAGTGTTTTCATGCCC 59.773 33.333 0.00 0.00 0.00 5.36
2932 5612 8.141835 ACTTTAAATTTCAGTGTTTTCATGCC 57.858 30.769 0.00 0.00 0.00 4.40
3058 5738 4.125703 CTCAAAGCGATGAAGATAAGCCT 58.874 43.478 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.