Multiple sequence alignment - TraesCS6B01G274600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G274600 chr6B 100.000 3672 0 0 3127 6798 495810935 495807264 0.000000e+00 6782.0
1 TraesCS6B01G274600 chr6B 100.000 2728 0 0 1 2728 495814061 495811334 0.000000e+00 5038.0
2 TraesCS6B01G274600 chr6B 97.265 1170 21 2 3127 4296 611659182 611658024 0.000000e+00 1973.0
3 TraesCS6B01G274600 chr6B 90.123 81 5 3 4300 4379 31431890 31431968 1.210000e-17 102.0
4 TraesCS6B01G274600 chr6D 93.124 2676 131 28 68 2728 326534798 326537435 0.000000e+00 3873.0
5 TraesCS6B01G274600 chr6D 93.085 2097 59 29 4286 6352 326537444 326539484 0.000000e+00 2990.0
6 TraesCS6B01G274600 chr6D 94.576 295 12 2 6478 6769 326539493 326539786 2.890000e-123 453.0
7 TraesCS6B01G274600 chr6A 92.552 2645 129 28 111 2728 465226354 465228957 0.000000e+00 3731.0
8 TraesCS6B01G274600 chr6A 94.684 2088 63 18 4300 6352 465228957 465231031 0.000000e+00 3197.0
9 TraesCS6B01G274600 chr6A 98.808 1007 12 0 3280 4286 119291235 119292241 0.000000e+00 1794.0
10 TraesCS6B01G274600 chr6A 91.030 301 17 3 6478 6769 465231040 465231339 1.370000e-106 398.0
11 TraesCS6B01G274600 chr6A 100.000 127 0 0 6354 6480 1814905 1815031 1.140000e-57 235.0
12 TraesCS6B01G274600 chr2B 98.803 1170 14 0 3127 4296 606041952 606043121 0.000000e+00 2084.0
13 TraesCS6B01G274600 chr2B 100.000 128 0 0 6354 6481 627325099 627325226 3.170000e-58 237.0
14 TraesCS6B01G274600 chr2B 93.878 147 6 3 6350 6496 411977596 411977453 1.150000e-52 219.0
15 TraesCS6B01G274600 chr4A 98.621 1160 14 1 3127 4286 703281927 703283084 0.000000e+00 2052.0
16 TraesCS6B01G274600 chr4A 100.000 127 0 0 6354 6480 731676504 731676378 1.140000e-57 235.0
17 TraesCS6B01G274600 chr1A 97.502 1161 19 3 3127 4287 568842707 568841557 0.000000e+00 1975.0
18 TraesCS6B01G274600 chr1A 94.737 76 2 2 4300 4374 188149064 188148990 4.310000e-22 117.0
19 TraesCS6B01G274600 chr4B 97.165 1164 17 2 3127 4286 646237388 646236237 0.000000e+00 1953.0
20 TraesCS6B01G274600 chr4B 98.473 131 2 0 6351 6481 210282887 210282757 1.470000e-56 231.0
21 TraesCS6B01G274600 chr3A 94.944 1167 42 6 3127 4286 47266956 47265800 0.000000e+00 1812.0
22 TraesCS6B01G274600 chr3A 94.914 1160 41 3 3127 4286 739914603 739915744 0.000000e+00 1799.0
23 TraesCS6B01G274600 chr3A 99.219 128 1 0 6353 6480 569426551 569426424 1.470000e-56 231.0
24 TraesCS6B01G274600 chr2D 94.187 1187 41 5 3127 4286 487937864 487939049 0.000000e+00 1784.0
25 TraesCS6B01G274600 chr2D 91.093 247 10 7 2148 2386 638429086 638429328 2.360000e-84 324.0
26 TraesCS6B01G274600 chr2D 96.970 33 1 0 2689 2721 532479036 532479068 1.000000e-03 56.5
27 TraesCS6B01G274600 chr7B 93.825 1166 52 12 3127 4290 486674295 486673148 0.000000e+00 1736.0
28 TraesCS6B01G274600 chr7B 94.444 108 4 2 4186 4291 251819498 251819391 1.520000e-36 165.0
29 TraesCS6B01G274600 chr7B 94.505 91 5 0 4196 4286 643349451 643349361 2.560000e-29 141.0
30 TraesCS6B01G274600 chr7B 93.103 87 5 1 4201 4286 251136868 251136782 7.160000e-25 126.0
31 TraesCS6B01G274600 chr5D 91.498 247 10 6 2148 2386 503296555 503296798 5.080000e-86 329.0
32 TraesCS6B01G274600 chr5D 90.688 247 12 6 2148 2386 512413923 512414166 1.100000e-82 318.0
33 TraesCS6B01G274600 chr5D 93.333 45 3 0 2684 2728 367671685 367671641 4.400000e-07 67.6
34 TraesCS6B01G274600 chr1D 91.498 247 8 7 2148 2386 254439691 254439932 1.830000e-85 327.0
35 TraesCS6B01G274600 chr1D 91.129 248 11 6 2148 2386 491423743 491423498 6.570000e-85 326.0
36 TraesCS6B01G274600 chr1D 88.372 86 8 2 4300 4384 128530386 128530302 1.210000e-17 102.0
37 TraesCS6B01G274600 chr3D 90.650 246 9 10 2148 2385 235621199 235621438 1.420000e-81 315.0
38 TraesCS6B01G274600 chr3D 96.970 33 1 0 2689 2721 35711417 35711449 1.000000e-03 56.5
39 TraesCS6B01G274600 chr3D 96.970 33 1 0 2692 2724 570500083 570500051 1.000000e-03 56.5
40 TraesCS6B01G274600 chr4D 89.837 246 12 9 2148 2385 19873166 19873406 3.080000e-78 303.0
41 TraesCS6B01G274600 chr4D 96.970 33 1 0 2692 2724 23909769 23909737 1.000000e-03 56.5
42 TraesCS6B01G274600 chr3B 89.394 198 12 2 4089 4286 8642009 8642197 2.450000e-59 241.0
43 TraesCS6B01G274600 chr3B 97.778 135 2 1 6354 6487 582286071 582285937 1.470000e-56 231.0
44 TraesCS6B01G274600 chr5A 99.219 128 1 0 6354 6481 154345533 154345660 1.470000e-56 231.0
45 TraesCS6B01G274600 chr5A 91.667 72 5 1 4300 4371 11067055 11066985 1.560000e-16 99.0
46 TraesCS6B01G274600 chr1B 95.105 143 5 2 6349 6490 520100253 520100394 2.470000e-54 224.0
47 TraesCS6B01G274600 chr1B 93.056 72 4 1 4300 4371 301273432 301273502 3.350000e-18 104.0
48 TraesCS6B01G274600 chr7A 90.411 73 6 1 4300 4372 692371810 692371739 2.020000e-15 95.3
49 TraesCS6B01G274600 chr7A 90.411 73 6 1 4300 4372 692395656 692395585 2.020000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G274600 chr6B 495807264 495814061 6797 True 5910.000000 6782 100.000000 1 6798 2 chr6B.!!$R2 6797
1 TraesCS6B01G274600 chr6B 611658024 611659182 1158 True 1973.000000 1973 97.265000 3127 4296 1 chr6B.!!$R1 1169
2 TraesCS6B01G274600 chr6D 326534798 326539786 4988 False 2438.666667 3873 93.595000 68 6769 3 chr6D.!!$F1 6701
3 TraesCS6B01G274600 chr6A 465226354 465231339 4985 False 2442.000000 3731 92.755333 111 6769 3 chr6A.!!$F3 6658
4 TraesCS6B01G274600 chr6A 119291235 119292241 1006 False 1794.000000 1794 98.808000 3280 4286 1 chr6A.!!$F2 1006
5 TraesCS6B01G274600 chr2B 606041952 606043121 1169 False 2084.000000 2084 98.803000 3127 4296 1 chr2B.!!$F1 1169
6 TraesCS6B01G274600 chr4A 703281927 703283084 1157 False 2052.000000 2052 98.621000 3127 4286 1 chr4A.!!$F1 1159
7 TraesCS6B01G274600 chr1A 568841557 568842707 1150 True 1975.000000 1975 97.502000 3127 4287 1 chr1A.!!$R2 1160
8 TraesCS6B01G274600 chr4B 646236237 646237388 1151 True 1953.000000 1953 97.165000 3127 4286 1 chr4B.!!$R2 1159
9 TraesCS6B01G274600 chr3A 47265800 47266956 1156 True 1812.000000 1812 94.944000 3127 4286 1 chr3A.!!$R1 1159
10 TraesCS6B01G274600 chr3A 739914603 739915744 1141 False 1799.000000 1799 94.914000 3127 4286 1 chr3A.!!$F1 1159
11 TraesCS6B01G274600 chr2D 487937864 487939049 1185 False 1784.000000 1784 94.187000 3127 4286 1 chr2D.!!$F1 1159
12 TraesCS6B01G274600 chr7B 486673148 486674295 1147 True 1736.000000 1736 93.825000 3127 4290 1 chr7B.!!$R3 1163

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.111446 TCGCAACCTGGGAATTGGAA 59.889 50.000 0.00 0.0 36.34 3.53 F
516 520 0.248458 CTGTGCGTTCGTTGGCTTTT 60.248 50.000 0.00 0.0 0.00 2.27 F
569 573 0.452784 GCGAACGATTTCTGTGGTGC 60.453 55.000 0.00 0.0 0.00 5.01 F
1869 1885 0.315568 ACACAGTTCCGCTCTGTCTC 59.684 55.000 0.00 0.0 43.14 3.36 F
2576 2607 0.465460 TGCGCTCACTTCCCAGTTTT 60.465 50.000 9.73 0.0 0.00 2.43 F
3483 3523 2.049063 GTTGTCGCCTGCTCGTCT 60.049 61.111 0.00 0.0 0.00 4.18 F
4462 4541 2.957402 TCTTTGCATGAGTGAGGGTT 57.043 45.000 0.00 0.0 0.00 4.11 F
5065 5145 1.136141 GTCTGCATCTGTTGAAGCACG 60.136 52.381 0.00 0.0 41.23 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 1417 0.905809 TACTACCTCCAAAGCCGCCA 60.906 55.000 0.00 0.00 0.00 5.69 R
1738 1754 3.096489 TGCTCCAAATTTGAGCACAAC 57.904 42.857 27.08 10.71 45.62 3.32 R
2522 2552 3.705072 GCAACTAGCTACCCCTTAAGAGA 59.295 47.826 3.36 0.00 41.15 3.10 R
3809 3849 0.912486 AGCGCCTACAAGAAGGGAAT 59.088 50.000 2.29 0.00 37.11 3.01 R
4474 4553 0.322975 CATCGATCCCAAGGGGCTAG 59.677 60.000 5.08 0.00 43.94 3.42 R
5029 5108 3.629438 CAGACATGTGTGCATTTGACA 57.371 42.857 10.38 0.00 31.99 3.58 R
5539 5623 0.033504 GGAACTCCACGCTGAACTCA 59.966 55.000 0.00 0.00 35.64 3.41 R
6471 6589 0.107945 CTGCTTGCTGGTACTCCCTC 60.108 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.430473 TTGTCGCAACCTGGGAATT 57.570 47.368 0.00 0.00 41.08 2.17
19 20 0.958091 TTGTCGCAACCTGGGAATTG 59.042 50.000 0.00 0.00 41.08 2.32
20 21 0.893270 TGTCGCAACCTGGGAATTGG 60.893 55.000 0.00 0.00 41.08 3.16
21 22 0.608035 GTCGCAACCTGGGAATTGGA 60.608 55.000 0.00 0.00 41.08 3.53
22 23 0.111446 TCGCAACCTGGGAATTGGAA 59.889 50.000 0.00 0.00 36.34 3.53
23 24 1.185315 CGCAACCTGGGAATTGGAAT 58.815 50.000 0.00 0.00 31.21 3.01
24 25 1.135024 CGCAACCTGGGAATTGGAATG 60.135 52.381 0.00 0.00 31.21 2.67
25 26 2.178580 GCAACCTGGGAATTGGAATGA 58.821 47.619 0.00 0.00 0.00 2.57
26 27 2.767960 GCAACCTGGGAATTGGAATGAT 59.232 45.455 0.00 0.00 0.00 2.45
27 28 3.960102 GCAACCTGGGAATTGGAATGATA 59.040 43.478 0.00 0.00 0.00 2.15
28 29 4.590222 GCAACCTGGGAATTGGAATGATAT 59.410 41.667 0.00 0.00 0.00 1.63
29 30 5.070847 GCAACCTGGGAATTGGAATGATATT 59.929 40.000 0.00 0.00 0.00 1.28
30 31 6.739565 GCAACCTGGGAATTGGAATGATATTC 60.740 42.308 0.00 0.00 0.00 1.75
31 32 5.072741 ACCTGGGAATTGGAATGATATTCG 58.927 41.667 0.00 0.00 0.00 3.34
32 33 5.072741 CCTGGGAATTGGAATGATATTCGT 58.927 41.667 0.00 0.00 0.00 3.85
33 34 6.183361 ACCTGGGAATTGGAATGATATTCGTA 60.183 38.462 0.00 0.00 0.00 3.43
34 35 6.714810 CCTGGGAATTGGAATGATATTCGTAA 59.285 38.462 0.00 0.00 0.00 3.18
35 36 7.308589 CCTGGGAATTGGAATGATATTCGTAAC 60.309 40.741 0.00 0.00 0.00 2.50
36 37 6.203915 TGGGAATTGGAATGATATTCGTAACG 59.796 38.462 0.00 0.00 0.00 3.18
37 38 6.425721 GGGAATTGGAATGATATTCGTAACGA 59.574 38.462 0.00 0.00 0.00 3.85
38 39 7.360101 GGGAATTGGAATGATATTCGTAACGAG 60.360 40.741 0.00 0.00 37.14 4.18
39 40 7.170998 GGAATTGGAATGATATTCGTAACGAGT 59.829 37.037 0.00 0.00 37.14 4.18
40 41 9.188588 GAATTGGAATGATATTCGTAACGAGTA 57.811 33.333 0.00 0.00 37.14 2.59
41 42 9.706691 AATTGGAATGATATTCGTAACGAGTAT 57.293 29.630 0.00 0.00 40.45 2.12
42 43 8.515473 TTGGAATGATATTCGTAACGAGTATG 57.485 34.615 0.00 0.00 38.51 2.39
43 44 7.878036 TGGAATGATATTCGTAACGAGTATGA 58.122 34.615 0.00 0.00 38.51 2.15
44 45 8.520351 TGGAATGATATTCGTAACGAGTATGAT 58.480 33.333 0.00 0.00 38.51 2.45
45 46 9.355215 GGAATGATATTCGTAACGAGTATGATT 57.645 33.333 0.00 0.00 41.64 2.57
48 49 8.431020 TGATATTCGTAACGAGTATGATTTCG 57.569 34.615 0.00 0.00 38.51 3.46
57 58 6.332504 ACGAGTATGATTTCGTCAATGTTC 57.667 37.500 0.00 0.00 46.07 3.18
58 59 5.867174 ACGAGTATGATTTCGTCAATGTTCA 59.133 36.000 0.00 0.00 46.07 3.18
59 60 6.035005 ACGAGTATGATTTCGTCAATGTTCAG 59.965 38.462 0.00 0.00 46.07 3.02
60 61 6.508563 CGAGTATGATTTCGTCAATGTTCAGG 60.509 42.308 0.00 0.00 40.97 3.86
61 62 4.970662 ATGATTTCGTCAATGTTCAGGG 57.029 40.909 0.00 0.00 40.97 4.45
62 63 3.750371 TGATTTCGTCAATGTTCAGGGT 58.250 40.909 0.00 0.00 32.78 4.34
63 64 4.141287 TGATTTCGTCAATGTTCAGGGTT 58.859 39.130 0.00 0.00 32.78 4.11
64 65 4.215399 TGATTTCGTCAATGTTCAGGGTTC 59.785 41.667 0.00 0.00 32.78 3.62
65 66 1.790755 TCGTCAATGTTCAGGGTTCG 58.209 50.000 0.00 0.00 0.00 3.95
66 67 1.341852 TCGTCAATGTTCAGGGTTCGA 59.658 47.619 0.00 0.00 0.00 3.71
80 81 6.812998 TCAGGGTTCGATCGTCTATAAATTT 58.187 36.000 15.94 0.00 0.00 1.82
96 97 9.589461 TCTATAAATTTAGGGTTTGTTTGGACA 57.411 29.630 3.94 0.00 0.00 4.02
101 102 8.815565 AATTTAGGGTTTGTTTGGACATTTTT 57.184 26.923 0.00 0.00 35.29 1.94
185 186 2.125269 CCCGAACCACACCCGATC 60.125 66.667 0.00 0.00 0.00 3.69
220 221 1.817520 CACACGGCCTGTTCACACA 60.818 57.895 0.00 0.00 0.00 3.72
221 222 1.817941 ACACGGCCTGTTCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
351 354 1.687493 CTCTTCGCCTTCCTCCCCT 60.687 63.158 0.00 0.00 0.00 4.79
422 425 3.815809 TGAAACCTCCAATCTTTCGTGT 58.184 40.909 0.00 0.00 0.00 4.49
439 442 3.316029 TCGTGTTTTTCTCCGTCTCAGTA 59.684 43.478 0.00 0.00 0.00 2.74
488 492 6.644347 TCTTCAGAGAAAATAAGCCGATTCT 58.356 36.000 0.00 0.00 34.96 2.40
516 520 0.248458 CTGTGCGTTCGTTGGCTTTT 60.248 50.000 0.00 0.00 0.00 2.27
526 530 1.270550 CGTTGGCTTTTGGATCTTGCT 59.729 47.619 0.00 0.00 0.00 3.91
569 573 0.452784 GCGAACGATTTCTGTGGTGC 60.453 55.000 0.00 0.00 0.00 5.01
573 577 0.534203 ACGATTTCTGTGGTGCGGTT 60.534 50.000 0.00 0.00 0.00 4.44
590 594 2.695359 GGTTGTTAGATTCGTGGCTGA 58.305 47.619 0.00 0.00 0.00 4.26
593 597 1.550524 TGTTAGATTCGTGGCTGAGCT 59.449 47.619 3.72 0.00 0.00 4.09
612 616 8.735315 GCTGAGCTGATAAGATAGATGTAGTAA 58.265 37.037 0.00 0.00 0.00 2.24
637 641 5.936956 TGGTTTAATTTGATTTGCCATGACC 59.063 36.000 0.00 0.00 0.00 4.02
677 681 4.209911 GCGAATACCGTCCTTTTATGTACC 59.790 45.833 0.00 0.00 41.15 3.34
683 689 4.285260 ACCGTCCTTTTATGTACCACTCTT 59.715 41.667 0.00 0.00 0.00 2.85
713 719 2.095567 CAGGATGCCTTTGAACTTGACG 60.096 50.000 0.00 0.00 0.00 4.35
718 724 1.884235 CCTTTGAACTTGACGGCTCT 58.116 50.000 0.00 0.00 0.00 4.09
719 725 1.801178 CCTTTGAACTTGACGGCTCTC 59.199 52.381 0.00 0.00 0.00 3.20
721 727 3.306088 CCTTTGAACTTGACGGCTCTCTA 60.306 47.826 0.00 0.00 0.00 2.43
756 762 6.827727 TGAGAACTAGTTTAGGCAAGAAAGT 58.172 36.000 10.02 0.00 0.00 2.66
763 769 2.954611 GGCAAGAAAGTCCGCCAC 59.045 61.111 0.00 0.00 44.25 5.01
775 781 2.362397 AGTCCGCCACTATACATGTCAG 59.638 50.000 0.00 3.48 31.37 3.51
790 796 8.915057 ATACATGTCAGGATTTCATAGAAAGG 57.085 34.615 0.00 0.00 0.00 3.11
798 804 6.489361 CAGGATTTCATAGAAAGGGGATTGAG 59.511 42.308 0.00 0.00 0.00 3.02
799 805 5.242615 GGATTTCATAGAAAGGGGATTGAGC 59.757 44.000 0.00 0.00 0.00 4.26
801 807 1.876156 CATAGAAAGGGGATTGAGCGC 59.124 52.381 0.00 0.00 0.00 5.92
821 827 4.270325 GCGCTTAGTAGTTTGTGGAATAGG 59.730 45.833 0.00 0.00 0.00 2.57
856 864 9.831737 CTGTTCTCATTAAACTCTTAAATGTGG 57.168 33.333 0.00 0.00 30.87 4.17
879 888 8.403236 GTGGTACCTTTTATAATTACTTGCCAG 58.597 37.037 14.36 0.00 0.00 4.85
904 920 5.580691 CCGATGTTGCAAGTCTTGTCTATAA 59.419 40.000 14.03 0.57 0.00 0.98
905 921 6.258727 CCGATGTTGCAAGTCTTGTCTATAAT 59.741 38.462 14.03 1.76 0.00 1.28
906 922 7.438160 CCGATGTTGCAAGTCTTGTCTATAATA 59.562 37.037 14.03 2.23 0.00 0.98
932 948 6.260714 GGTTTCTTTCAGCAAAAATGTTGGAT 59.739 34.615 0.00 0.00 0.00 3.41
986 1002 3.342926 AGCTATCATCTCCCAGGAAGT 57.657 47.619 0.00 0.00 0.00 3.01
1047 1063 4.072131 CCAGCAACAACACCAAGTACTAT 58.928 43.478 0.00 0.00 0.00 2.12
1401 1417 2.680965 CTATTTGGGGGTGGCGGT 59.319 61.111 0.00 0.00 0.00 5.68
1428 1444 5.878669 CGGCTTTGGAGGTAGTAGTTTTATT 59.121 40.000 0.00 0.00 0.00 1.40
1429 1445 7.043565 CGGCTTTGGAGGTAGTAGTTTTATTA 58.956 38.462 0.00 0.00 0.00 0.98
1430 1446 7.713942 CGGCTTTGGAGGTAGTAGTTTTATTAT 59.286 37.037 0.00 0.00 0.00 1.28
1431 1447 8.837389 GGCTTTGGAGGTAGTAGTTTTATTATG 58.163 37.037 0.00 0.00 0.00 1.90
1432 1448 9.392259 GCTTTGGAGGTAGTAGTTTTATTATGT 57.608 33.333 0.00 0.00 0.00 2.29
1491 1507 3.438781 TGCTTTGCGGGAGTTAAATAGTG 59.561 43.478 0.00 0.00 0.00 2.74
1811 1827 7.633789 AGGAATTCTATCAAAGTGTACATGGT 58.366 34.615 5.23 0.00 0.00 3.55
1812 1828 8.109634 AGGAATTCTATCAAAGTGTACATGGTT 58.890 33.333 5.23 0.00 0.00 3.67
1869 1885 0.315568 ACACAGTTCCGCTCTGTCTC 59.684 55.000 0.00 0.00 43.14 3.36
1929 1945 4.429854 AACTTGCTCTCTTTCTGTCCTT 57.570 40.909 0.00 0.00 0.00 3.36
1942 1958 8.690203 TCTTTCTGTCCTTGTGAAATATTGAA 57.310 30.769 0.00 0.00 0.00 2.69
1995 2011 6.207691 TGGTTTTGCAATATTTCTAGAGCC 57.792 37.500 0.00 0.00 0.00 4.70
1999 2015 7.602265 GGTTTTGCAATATTTCTAGAGCCAAAA 59.398 33.333 0.00 0.00 0.00 2.44
2007 2023 5.902613 TTTCTAGAGCCAAAACATCATGG 57.097 39.130 0.00 0.00 39.80 3.66
2117 2139 3.702330 CCGAAAAGTTGAACCTTGTTCC 58.298 45.455 4.65 0.00 0.00 3.62
2118 2140 3.129638 CCGAAAAGTTGAACCTTGTTCCA 59.870 43.478 4.65 0.00 0.00 3.53
2123 2145 7.043656 CGAAAAGTTGAACCTTGTTCCATTTAC 60.044 37.037 4.65 0.00 0.00 2.01
2412 2437 3.788227 ACATGCTTTTGACCAGGTCTA 57.212 42.857 20.82 10.60 33.15 2.59
2425 2450 3.007398 ACCAGGTCTAGTTGCTGAAAGAG 59.993 47.826 0.00 0.00 34.07 2.85
2444 2469 5.048846 AGAGGTTAGTTGTTGGATTGTGT 57.951 39.130 0.00 0.00 0.00 3.72
2506 2536 2.095263 CAGTGGCTGTTAATTGGTTCCG 60.095 50.000 0.00 0.00 0.00 4.30
2522 2552 8.589701 ATTGGTTCCGGTATTCTATTCTTTTT 57.410 30.769 0.00 0.00 0.00 1.94
2540 2570 7.184067 TCTTTTTCTCTTAAGGGGTAGCTAG 57.816 40.000 1.61 0.00 0.00 3.42
2576 2607 0.465460 TGCGCTCACTTCCCAGTTTT 60.465 50.000 9.73 0.00 0.00 2.43
2636 2667 7.295952 AGAAATGTAATGACGTGACTTGATC 57.704 36.000 0.00 0.00 0.00 2.92
2641 2672 7.987268 TGTAATGACGTGACTTGATCTTATC 57.013 36.000 0.00 0.00 0.00 1.75
2654 2685 8.384693 ACTTGATCTTATCCATGGCATATCTA 57.615 34.615 6.96 2.24 0.00 1.98
2717 2748 3.326880 ACCTCCGTCTGGAATTAGTTGTT 59.673 43.478 0.00 0.00 45.87 2.83
3483 3523 2.049063 GTTGTCGCCTGCTCGTCT 60.049 61.111 0.00 0.00 0.00 4.18
4257 4336 7.954835 TGTCTTCCTGTTCAATGAAATGAAAT 58.045 30.769 0.00 0.00 40.76 2.17
4335 4414 8.839310 ATGTATTTTCAGTGCTAGATACATCC 57.161 34.615 11.89 0.00 36.49 3.51
4343 4422 4.402793 AGTGCTAGATACATCCGTTTGAGT 59.597 41.667 0.00 0.00 0.00 3.41
4381 4460 6.039047 CGCACAGAGGGAGTACTAGTTAATTA 59.961 42.308 0.00 0.00 0.00 1.40
4462 4541 2.957402 TCTTTGCATGAGTGAGGGTT 57.043 45.000 0.00 0.00 0.00 4.11
4474 4553 3.416156 AGTGAGGGTTCAAGCTTTGATC 58.584 45.455 0.00 0.00 39.84 2.92
4506 4585 3.129287 GGGATCGATGCAGATTTGTTTGT 59.871 43.478 19.14 0.00 0.00 2.83
4627 4706 5.221986 TGCCTGTATTAGTCGTAGGGATCTA 60.222 44.000 0.00 0.00 0.00 1.98
4789 4868 5.735285 CTGAATGCAGAGGATCAGGTATA 57.265 43.478 0.00 0.00 45.17 1.47
4864 4943 5.762179 TGTAATTCTTCATCTGTCCAGGT 57.238 39.130 0.00 0.00 0.00 4.00
5029 5108 6.112734 TGTGAGTCTCTTTTACACACACAAT 58.887 36.000 0.65 0.00 41.46 2.71
5065 5145 1.136141 GTCTGCATCTGTTGAAGCACG 60.136 52.381 0.00 0.00 41.23 5.34
5345 5425 4.322057 AGCCTGGTACATCAATTTCCTT 57.678 40.909 0.00 0.00 38.20 3.36
5414 5494 6.015010 CCAGTTCCTCTATCCTGTCGATAAAT 60.015 42.308 0.00 0.00 32.93 1.40
5441 5525 5.187621 CCCCCTTTTGGAACTTACTGATA 57.812 43.478 0.00 0.00 44.07 2.15
5445 5529 6.889722 CCCCTTTTGGAACTTACTGATATGAA 59.110 38.462 0.00 0.00 44.07 2.57
5452 5536 7.816640 TGGAACTTACTGATATGAACTTTTGC 58.183 34.615 0.00 0.00 0.00 3.68
5454 5538 8.178313 GGAACTTACTGATATGAACTTTTGCTC 58.822 37.037 0.00 0.00 0.00 4.26
5456 5540 6.599638 ACTTACTGATATGAACTTTTGCTCCC 59.400 38.462 0.00 0.00 0.00 4.30
5500 5584 3.162666 CATAAATGATGAGGGCATGCCT 58.837 45.455 34.70 21.29 37.82 4.75
5539 5623 0.106918 TGAAGGGTCGCCTGTTTGTT 60.107 50.000 0.00 0.00 0.00 2.83
5653 5737 1.515954 GTCGGACATGGACGTGGAT 59.484 57.895 2.62 0.00 0.00 3.41
5680 5764 1.221840 GGAGACCACCATGCACGAT 59.778 57.895 0.00 0.00 0.00 3.73
5752 5836 5.982516 AGAAGCATATGATGAAGAAGACGAC 59.017 40.000 6.97 0.00 0.00 4.34
5761 5845 0.950116 AAGAAGACGACGACGAAGGT 59.050 50.000 15.32 0.00 42.66 3.50
5845 5949 5.122239 TCGACTGCATTCTATTGTTCCTTTG 59.878 40.000 2.32 0.00 0.00 2.77
5863 5967 9.110617 GTTCCTTTGTCGTTTAATTAAAGTAGC 57.889 33.333 10.92 3.51 0.00 3.58
5864 5968 8.611654 TCCTTTGTCGTTTAATTAAAGTAGCT 57.388 30.769 10.92 0.00 0.00 3.32
5973 6079 1.612676 TGCCTACTGTGTCGTGTACT 58.387 50.000 0.00 0.00 0.00 2.73
6001 6108 6.378280 CAGTATTATTTTGGAGCCCAGACTTT 59.622 38.462 0.00 0.00 33.81 2.66
6026 6133 2.638480 TTCAGACTTGGTTGGGTGAG 57.362 50.000 0.00 0.00 0.00 3.51
6065 6172 2.986479 GGTGCATTTTCCATGACGAAAC 59.014 45.455 0.00 0.00 31.57 2.78
6085 6192 7.792925 CGAAACCATCGTAGCATTATTATTCA 58.207 34.615 0.00 0.00 46.52 2.57
6159 6266 1.410004 TCTGTCAGTCAGGGTCGTTT 58.590 50.000 0.00 0.00 43.76 3.60
6161 6268 2.169769 TCTGTCAGTCAGGGTCGTTTTT 59.830 45.455 0.00 0.00 43.76 1.94
6187 6294 6.039941 TGACTGGAACGTGTTAATGGAATTTT 59.960 34.615 0.00 0.00 37.87 1.82
6188 6295 7.228906 TGACTGGAACGTGTTAATGGAATTTTA 59.771 33.333 0.00 0.00 37.87 1.52
6189 6296 8.117813 ACTGGAACGTGTTAATGGAATTTTAT 57.882 30.769 0.00 0.00 37.87 1.40
6235 6342 1.593006 CGGCACCAATAGTAAAGCGAG 59.407 52.381 0.00 0.00 0.00 5.03
6302 6420 0.890996 CTTGCTTCCGGGTCTTGCTT 60.891 55.000 0.00 0.00 0.00 3.91
6307 6425 0.766131 TTCCGGGTCTTGCTTACCAA 59.234 50.000 0.00 0.00 38.87 3.67
6352 6470 3.603857 GCATATCGTTGTTCCCGAAATCG 60.604 47.826 0.00 0.00 37.93 3.34
6354 6472 2.721274 TCGTTGTTCCCGAAATCGTA 57.279 45.000 1.79 0.00 37.74 3.43
6355 6473 2.327568 TCGTTGTTCCCGAAATCGTAC 58.672 47.619 1.79 0.00 37.74 3.67
6356 6474 2.030007 TCGTTGTTCCCGAAATCGTACT 60.030 45.455 1.79 0.00 37.74 2.73
6357 6475 2.343544 CGTTGTTCCCGAAATCGTACTC 59.656 50.000 1.79 0.00 37.74 2.59
6358 6476 2.660189 TGTTCCCGAAATCGTACTCC 57.340 50.000 1.79 0.00 37.74 3.85
6359 6477 1.205417 TGTTCCCGAAATCGTACTCCC 59.795 52.381 1.79 0.00 37.74 4.30
6360 6478 1.479730 GTTCCCGAAATCGTACTCCCT 59.520 52.381 1.79 0.00 37.74 4.20
6361 6479 1.396653 TCCCGAAATCGTACTCCCTC 58.603 55.000 1.79 0.00 37.74 4.30
6362 6480 0.388294 CCCGAAATCGTACTCCCTCC 59.612 60.000 1.79 0.00 37.74 4.30
6363 6481 0.030369 CCGAAATCGTACTCCCTCCG 59.970 60.000 1.79 0.00 37.74 4.63
6364 6482 0.737219 CGAAATCGTACTCCCTCCGT 59.263 55.000 0.00 0.00 34.11 4.69
6365 6483 1.133790 CGAAATCGTACTCCCTCCGTT 59.866 52.381 0.00 0.00 34.11 4.44
6366 6484 2.793933 CGAAATCGTACTCCCTCCGTTC 60.794 54.545 0.00 0.00 34.11 3.95
6367 6485 1.109609 AATCGTACTCCCTCCGTTCC 58.890 55.000 0.00 0.00 0.00 3.62
6368 6486 1.099879 ATCGTACTCCCTCCGTTCCG 61.100 60.000 0.00 0.00 0.00 4.30
6369 6487 1.746615 CGTACTCCCTCCGTTCCGA 60.747 63.158 0.00 0.00 0.00 4.55
6370 6488 1.308069 CGTACTCCCTCCGTTCCGAA 61.308 60.000 0.00 0.00 0.00 4.30
6371 6489 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
6372 6490 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
6373 6491 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
6374 6492 1.755380 ACTCCCTCCGTTCCGAATTAG 59.245 52.381 0.00 0.00 0.00 1.73
6375 6493 1.755380 CTCCCTCCGTTCCGAATTAGT 59.245 52.381 0.00 0.00 0.00 2.24
6376 6494 2.167900 CTCCCTCCGTTCCGAATTAGTT 59.832 50.000 0.00 0.00 0.00 2.24
6377 6495 2.093869 TCCCTCCGTTCCGAATTAGTTG 60.094 50.000 0.00 0.00 0.00 3.16
6378 6496 2.354403 CCCTCCGTTCCGAATTAGTTGT 60.354 50.000 0.00 0.00 0.00 3.32
6379 6497 2.928116 CCTCCGTTCCGAATTAGTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
6380 6498 3.368116 CCTCCGTTCCGAATTAGTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
6381 6499 4.243270 CTCCGTTCCGAATTAGTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
6382 6500 3.991773 TCCGTTCCGAATTAGTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
6383 6501 3.124636 CCGTTCCGAATTAGTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
6384 6502 3.991773 CGTTCCGAATTAGTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
6385 6503 4.630069 CGTTCCGAATTAGTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
6386 6504 5.121768 CGTTCCGAATTAGTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
6387 6505 6.348213 CGTTCCGAATTAGTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
6388 6506 6.494893 TCCGAATTAGTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
6389 6507 6.001460 TCCGAATTAGTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
6390 6508 6.148811 TCCGAATTAGTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
6391 6509 6.149474 CCGAATTAGTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
6392 6510 7.333423 CCGAATTAGTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
6393 6511 8.383619 CGAATTAGTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
6394 6512 9.436957 GAATTAGTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
6395 6513 9.965902 AATTAGTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
6397 6515 9.871238 TTAGTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
6398 6516 7.036220 AGTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
6399 6517 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
6400 6518 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
6401 6519 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
6402 6520 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
6403 6521 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
6404 6522 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
6405 6523 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
6421 6539 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
6422 6540 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
6423 6541 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
6424 6542 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
6427 6545 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
6431 6549 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
6432 6550 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
6433 6551 7.947282 AGACTCATTTTAGTGCTAGATACCTC 58.053 38.462 0.00 0.00 0.00 3.85
6434 6552 7.014808 AGACTCATTTTAGTGCTAGATACCTCC 59.985 40.741 0.00 0.00 0.00 4.30
6435 6553 6.085555 TCATTTTAGTGCTAGATACCTCCG 57.914 41.667 0.00 0.00 0.00 4.63
6436 6554 5.597182 TCATTTTAGTGCTAGATACCTCCGT 59.403 40.000 0.00 0.00 0.00 4.69
6437 6555 6.774170 TCATTTTAGTGCTAGATACCTCCGTA 59.226 38.462 0.00 0.00 0.00 4.02
6438 6556 7.450634 TCATTTTAGTGCTAGATACCTCCGTAT 59.549 37.037 0.00 0.00 37.92 3.06
6450 6568 7.690952 GATACCTCCGTATCTAGACAAATCT 57.309 40.000 0.00 0.00 45.11 2.40
6451 6569 8.789825 GATACCTCCGTATCTAGACAAATCTA 57.210 38.462 0.00 0.00 45.11 1.98
6452 6570 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
6453 6571 7.513371 ACCTCCGTATCTAGACAAATCTAAG 57.487 40.000 0.00 0.00 36.98 2.18
6454 6572 7.288560 ACCTCCGTATCTAGACAAATCTAAGA 58.711 38.462 0.00 0.00 36.98 2.10
6455 6573 7.229106 ACCTCCGTATCTAGACAAATCTAAGAC 59.771 40.741 0.00 0.00 36.98 3.01
6456 6574 7.228906 CCTCCGTATCTAGACAAATCTAAGACA 59.771 40.741 0.00 0.00 36.98 3.41
6457 6575 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
6458 6576 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
6459 6577 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
6470 6588 9.746711 CAAATCTAAGACAAGTAATTCAGAACG 57.253 33.333 0.00 0.00 0.00 3.95
6471 6589 8.480643 AATCTAAGACAAGTAATTCAGAACGG 57.519 34.615 0.00 0.00 0.00 4.44
6472 6590 7.223260 TCTAAGACAAGTAATTCAGAACGGA 57.777 36.000 0.00 0.00 0.00 4.69
6473 6591 7.313646 TCTAAGACAAGTAATTCAGAACGGAG 58.686 38.462 0.00 0.00 0.00 4.63
6474 6592 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
6475 6593 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
6476 6594 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
6482 6600 0.406750 TCAGAACGGAGGGAGTACCA 59.593 55.000 0.00 0.00 43.89 3.25
6500 6618 2.033141 GCAAGCAGCTCAGTCCCA 59.967 61.111 0.00 0.00 41.15 4.37
6539 6657 2.980548 ACAGTAACCACCACCTTCCTA 58.019 47.619 0.00 0.00 0.00 2.94
6597 6715 0.681733 GAGTCTTGCTCCCAGTGACA 59.318 55.000 0.00 0.00 38.27 3.58
6691 6809 2.350498 GTGGCCGTGTGTATGTTATGTC 59.650 50.000 0.00 0.00 0.00 3.06
6769 6896 6.533367 GCTTCTTATACAACTGGAGTTCTGAG 59.467 42.308 0.00 0.00 35.83 3.35
6770 6897 7.540474 TTCTTATACAACTGGAGTTCTGAGT 57.460 36.000 0.00 0.00 35.83 3.41
6771 6898 7.540474 TCTTATACAACTGGAGTTCTGAGTT 57.460 36.000 0.00 0.00 35.83 3.01
6772 6899 8.645814 TCTTATACAACTGGAGTTCTGAGTTA 57.354 34.615 0.00 0.00 35.83 2.24
6773 6900 8.740906 TCTTATACAACTGGAGTTCTGAGTTAG 58.259 37.037 0.00 0.00 35.83 2.34
6774 6901 4.608948 ACAACTGGAGTTCTGAGTTAGG 57.391 45.455 0.00 0.00 35.83 2.69
6775 6902 3.967987 ACAACTGGAGTTCTGAGTTAGGT 59.032 43.478 0.00 0.00 35.83 3.08
6776 6903 5.145564 ACAACTGGAGTTCTGAGTTAGGTA 58.854 41.667 0.00 0.00 35.83 3.08
6777 6904 5.601313 ACAACTGGAGTTCTGAGTTAGGTAA 59.399 40.000 0.00 0.00 35.83 2.85
6778 6905 6.270231 ACAACTGGAGTTCTGAGTTAGGTAAT 59.730 38.462 0.00 0.00 35.83 1.89
6779 6906 7.453752 ACAACTGGAGTTCTGAGTTAGGTAATA 59.546 37.037 0.00 0.00 35.83 0.98
6780 6907 7.407393 ACTGGAGTTCTGAGTTAGGTAATAC 57.593 40.000 0.00 0.00 0.00 1.89
6781 6908 6.095160 ACTGGAGTTCTGAGTTAGGTAATACG 59.905 42.308 0.00 0.00 0.00 3.06
6782 6909 6.182627 TGGAGTTCTGAGTTAGGTAATACGA 58.817 40.000 0.00 0.00 0.00 3.43
6783 6910 6.318144 TGGAGTTCTGAGTTAGGTAATACGAG 59.682 42.308 0.00 0.00 0.00 4.18
6784 6911 6.318396 GGAGTTCTGAGTTAGGTAATACGAGT 59.682 42.308 0.00 0.00 0.00 4.18
6785 6912 7.497249 GGAGTTCTGAGTTAGGTAATACGAGTA 59.503 40.741 0.00 0.00 0.00 2.59
6786 6913 8.436046 AGTTCTGAGTTAGGTAATACGAGTAG 57.564 38.462 0.00 0.00 0.00 2.57
6787 6914 8.263640 AGTTCTGAGTTAGGTAATACGAGTAGA 58.736 37.037 0.00 0.00 0.00 2.59
6788 6915 8.887717 GTTCTGAGTTAGGTAATACGAGTAGAA 58.112 37.037 0.00 0.00 0.00 2.10
6789 6916 8.659925 TCTGAGTTAGGTAATACGAGTAGAAG 57.340 38.462 0.00 0.00 0.00 2.85
6790 6917 8.263640 TCTGAGTTAGGTAATACGAGTAGAAGT 58.736 37.037 0.00 0.00 0.00 3.01
6791 6918 9.539825 CTGAGTTAGGTAATACGAGTAGAAGTA 57.460 37.037 0.00 0.00 0.00 2.24
6792 6919 9.890629 TGAGTTAGGTAATACGAGTAGAAGTAA 57.109 33.333 0.00 0.00 0.00 2.24
6797 6924 8.530804 AGGTAATACGAGTAGAAGTAATTGGT 57.469 34.615 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.958091 CAATTCCCAGGTTGCGACAA 59.042 50.000 6.39 0.00 0.00 3.18
1 2 0.893270 CCAATTCCCAGGTTGCGACA 60.893 55.000 6.39 0.00 0.00 4.35
2 3 0.608035 TCCAATTCCCAGGTTGCGAC 60.608 55.000 0.00 0.00 0.00 5.19
3 4 0.111446 TTCCAATTCCCAGGTTGCGA 59.889 50.000 0.00 0.00 0.00 5.10
4 5 1.135024 CATTCCAATTCCCAGGTTGCG 60.135 52.381 0.00 0.00 0.00 4.85
5 6 2.178580 TCATTCCAATTCCCAGGTTGC 58.821 47.619 0.00 0.00 0.00 4.17
6 7 6.515531 CGAATATCATTCCAATTCCCAGGTTG 60.516 42.308 0.00 0.00 0.00 3.77
7 8 5.536161 CGAATATCATTCCAATTCCCAGGTT 59.464 40.000 0.00 0.00 0.00 3.50
8 9 5.072741 CGAATATCATTCCAATTCCCAGGT 58.927 41.667 0.00 0.00 0.00 4.00
9 10 5.072741 ACGAATATCATTCCAATTCCCAGG 58.927 41.667 0.00 0.00 0.00 4.45
10 11 7.571244 CGTTACGAATATCATTCCAATTCCCAG 60.571 40.741 0.00 0.00 0.00 4.45
11 12 6.203915 CGTTACGAATATCATTCCAATTCCCA 59.796 38.462 0.00 0.00 0.00 4.37
12 13 6.425721 TCGTTACGAATATCATTCCAATTCCC 59.574 38.462 4.50 0.00 31.06 3.97
13 14 7.170998 ACTCGTTACGAATATCATTCCAATTCC 59.829 37.037 9.23 0.00 34.74 3.01
14 15 8.073355 ACTCGTTACGAATATCATTCCAATTC 57.927 34.615 9.23 0.00 34.74 2.17
15 16 9.706691 ATACTCGTTACGAATATCATTCCAATT 57.293 29.630 9.23 0.00 34.74 2.32
16 17 9.140286 CATACTCGTTACGAATATCATTCCAAT 57.860 33.333 9.23 0.00 34.74 3.16
17 18 8.354426 TCATACTCGTTACGAATATCATTCCAA 58.646 33.333 9.23 0.00 34.74 3.53
18 19 7.878036 TCATACTCGTTACGAATATCATTCCA 58.122 34.615 9.23 0.00 34.74 3.53
19 20 8.912787 ATCATACTCGTTACGAATATCATTCC 57.087 34.615 9.23 0.00 34.74 3.01
22 23 9.062674 CGAAATCATACTCGTTACGAATATCAT 57.937 33.333 9.23 0.00 34.74 2.45
23 24 8.071967 ACGAAATCATACTCGTTACGAATATCA 58.928 33.333 9.23 0.00 45.58 2.15
24 25 8.432302 ACGAAATCATACTCGTTACGAATATC 57.568 34.615 9.23 0.00 45.58 1.63
35 36 6.331170 TGAACATTGACGAAATCATACTCG 57.669 37.500 0.00 0.00 37.11 4.18
36 37 6.238211 CCCTGAACATTGACGAAATCATACTC 60.238 42.308 0.00 0.00 37.11 2.59
37 38 5.586243 CCCTGAACATTGACGAAATCATACT 59.414 40.000 0.00 0.00 37.11 2.12
38 39 5.354234 ACCCTGAACATTGACGAAATCATAC 59.646 40.000 0.00 0.00 37.11 2.39
39 40 5.496556 ACCCTGAACATTGACGAAATCATA 58.503 37.500 0.00 0.00 37.11 2.15
40 41 4.335416 ACCCTGAACATTGACGAAATCAT 58.665 39.130 0.00 0.00 37.11 2.45
41 42 3.750371 ACCCTGAACATTGACGAAATCA 58.250 40.909 0.00 0.00 34.65 2.57
42 43 4.669197 CGAACCCTGAACATTGACGAAATC 60.669 45.833 0.00 0.00 0.00 2.17
43 44 3.188460 CGAACCCTGAACATTGACGAAAT 59.812 43.478 0.00 0.00 0.00 2.17
44 45 2.546368 CGAACCCTGAACATTGACGAAA 59.454 45.455 0.00 0.00 0.00 3.46
45 46 2.139917 CGAACCCTGAACATTGACGAA 58.860 47.619 0.00 0.00 0.00 3.85
46 47 1.341852 TCGAACCCTGAACATTGACGA 59.658 47.619 0.00 0.00 0.00 4.20
47 48 1.790755 TCGAACCCTGAACATTGACG 58.209 50.000 0.00 0.00 0.00 4.35
48 49 2.348666 CGATCGAACCCTGAACATTGAC 59.651 50.000 10.26 0.00 0.00 3.18
49 50 2.028476 ACGATCGAACCCTGAACATTGA 60.028 45.455 24.34 0.00 0.00 2.57
50 51 2.346803 ACGATCGAACCCTGAACATTG 58.653 47.619 24.34 0.00 0.00 2.82
51 52 2.233922 AGACGATCGAACCCTGAACATT 59.766 45.455 24.34 0.00 0.00 2.71
52 53 1.825474 AGACGATCGAACCCTGAACAT 59.175 47.619 24.34 0.00 0.00 2.71
53 54 1.254026 AGACGATCGAACCCTGAACA 58.746 50.000 24.34 0.00 0.00 3.18
54 55 3.712091 ATAGACGATCGAACCCTGAAC 57.288 47.619 24.34 1.62 0.00 3.18
55 56 5.840243 TTTATAGACGATCGAACCCTGAA 57.160 39.130 24.34 5.33 0.00 3.02
56 57 6.401047 AATTTATAGACGATCGAACCCTGA 57.599 37.500 24.34 3.00 0.00 3.86
57 58 7.328737 CCTAAATTTATAGACGATCGAACCCTG 59.671 40.741 24.34 0.00 0.00 4.45
58 59 7.376615 CCTAAATTTATAGACGATCGAACCCT 58.623 38.462 24.34 14.49 0.00 4.34
59 60 6.589139 CCCTAAATTTATAGACGATCGAACCC 59.411 42.308 24.34 7.73 0.00 4.11
60 61 7.150640 ACCCTAAATTTATAGACGATCGAACC 58.849 38.462 24.34 10.31 0.00 3.62
61 62 8.585189 AACCCTAAATTTATAGACGATCGAAC 57.415 34.615 24.34 14.96 0.00 3.95
62 63 9.037737 CAAACCCTAAATTTATAGACGATCGAA 57.962 33.333 24.34 4.42 0.00 3.71
63 64 8.199449 ACAAACCCTAAATTTATAGACGATCGA 58.801 33.333 24.34 0.00 0.00 3.59
64 65 8.361592 ACAAACCCTAAATTTATAGACGATCG 57.638 34.615 14.88 14.88 0.00 3.69
113 114 3.059461 CGTTCTCTATCTCTACCGTCTGC 60.059 52.174 0.00 0.00 0.00 4.26
220 221 0.606401 CCTGCACGAATCTTGGTGGT 60.606 55.000 7.11 0.00 37.37 4.16
221 222 0.321564 TCCTGCACGAATCTTGGTGG 60.322 55.000 7.11 0.00 37.37 4.61
320 323 2.858941 GGCGAAGAGAGGAAATCGTAAC 59.141 50.000 0.00 0.00 37.60 2.50
321 324 2.758979 AGGCGAAGAGAGGAAATCGTAA 59.241 45.455 0.00 0.00 37.60 3.18
422 425 2.029649 CGGGTACTGAGACGGAGAAAAA 60.030 50.000 0.00 0.00 36.31 1.94
488 492 1.344226 CGAACGCACAGATCGAGCAA 61.344 55.000 2.38 0.00 46.27 3.91
516 520 1.299648 CCGGACCAAGCAAGATCCA 59.700 57.895 0.00 0.00 0.00 3.41
569 573 1.393539 CAGCCACGAATCTAACAACCG 59.606 52.381 0.00 0.00 0.00 4.44
573 577 1.550524 AGCTCAGCCACGAATCTAACA 59.449 47.619 0.00 0.00 0.00 2.41
590 594 9.540538 ACCATTACTACATCTATCTTATCAGCT 57.459 33.333 0.00 0.00 0.00 4.24
612 616 6.598850 GGTCATGGCAAATCAAATTAAACCAT 59.401 34.615 0.00 0.00 37.13 3.55
621 625 5.827797 GGATACTAGGTCATGGCAAATCAAA 59.172 40.000 0.00 0.00 0.00 2.69
677 681 5.416952 AGGCATCCTGTTGAATTAAAGAGTG 59.583 40.000 0.00 0.00 29.57 3.51
683 689 6.267471 AGTTCAAAGGCATCCTGTTGAATTAA 59.733 34.615 17.56 0.00 39.81 1.40
689 695 3.318839 TCAAGTTCAAAGGCATCCTGTTG 59.681 43.478 0.00 0.00 32.13 3.33
713 719 6.472686 TCTCATAAAGGAAAGTAGAGAGCC 57.527 41.667 0.00 0.00 0.00 4.70
721 727 9.945904 CCTAAACTAGTTCTCATAAAGGAAAGT 57.054 33.333 8.95 0.00 0.00 2.66
756 762 1.686587 CCTGACATGTATAGTGGCGGA 59.313 52.381 0.00 0.00 32.48 5.54
775 781 5.242615 GCTCAATCCCCTTTCTATGAAATCC 59.757 44.000 0.00 0.00 0.00 3.01
790 796 2.892784 ACTACTAAGCGCTCAATCCC 57.107 50.000 12.06 0.00 0.00 3.85
798 804 4.270325 CCTATTCCACAAACTACTAAGCGC 59.730 45.833 0.00 0.00 0.00 5.92
799 805 5.519206 GTCCTATTCCACAAACTACTAAGCG 59.481 44.000 0.00 0.00 0.00 4.68
821 827 9.606631 AGAGTTTAATGAGAACAGGAATATGTC 57.393 33.333 0.00 0.00 31.50 3.06
835 841 9.449719 AGGTACCACATTTAAGAGTTTAATGAG 57.550 33.333 15.94 0.00 0.00 2.90
856 864 7.423199 GGCTGGCAAGTAATTATAAAAGGTAC 58.577 38.462 0.00 0.00 0.00 3.34
858 866 5.067283 CGGCTGGCAAGTAATTATAAAAGGT 59.933 40.000 1.08 0.00 0.00 3.50
864 872 4.968259 ACATCGGCTGGCAAGTAATTATA 58.032 39.130 1.08 0.00 0.00 0.98
865 873 3.820557 ACATCGGCTGGCAAGTAATTAT 58.179 40.909 1.08 0.00 0.00 1.28
870 879 1.305219 GCAACATCGGCTGGCAAGTA 61.305 55.000 1.08 0.00 0.00 2.24
879 888 0.593128 ACAAGACTTGCAACATCGGC 59.407 50.000 15.24 0.00 0.00 5.54
904 920 7.442062 CCAACATTTTTGCTGAAAGAAACCTAT 59.558 33.333 0.00 0.00 34.07 2.57
905 921 6.760770 CCAACATTTTTGCTGAAAGAAACCTA 59.239 34.615 0.00 0.00 34.07 3.08
906 922 5.585844 CCAACATTTTTGCTGAAAGAAACCT 59.414 36.000 0.00 0.00 34.07 3.50
916 932 6.203338 AGCACTAAAATCCAACATTTTTGCTG 59.797 34.615 14.07 7.93 40.55 4.41
917 933 6.290605 AGCACTAAAATCCAACATTTTTGCT 58.709 32.000 10.92 10.92 38.86 3.91
932 948 5.703592 TCGCCAAGAGATAAAAGCACTAAAA 59.296 36.000 0.00 0.00 0.00 1.52
986 1002 2.830923 CCAAACATGGCTGGTAAATGGA 59.169 45.455 7.08 0.00 0.00 3.41
1047 1063 1.357137 TGGATACACCAAGCACCTCA 58.643 50.000 0.00 0.00 46.75 3.86
1401 1417 0.905809 TACTACCTCCAAAGCCGCCA 60.906 55.000 0.00 0.00 0.00 5.69
1435 1451 9.638239 GGAACAAAGCACAAAGAATTTCATATA 57.362 29.630 0.00 0.00 35.03 0.86
1491 1507 9.793252 ATTTAATTATCACAAAGTGAGTGCATC 57.207 29.630 6.01 0.00 46.04 3.91
1738 1754 3.096489 TGCTCCAAATTTGAGCACAAC 57.904 42.857 27.08 10.71 45.62 3.32
1796 1812 8.735315 CACCATATAAAACCATGTACACTTTGA 58.265 33.333 0.00 0.00 0.00 2.69
1869 1885 6.266103 AGAAGCACCCATCATGGTTTTATATG 59.734 38.462 2.07 0.00 37.88 1.78
1929 1945 8.950210 GGATCTCTTTCACTTCAATATTTCACA 58.050 33.333 0.00 0.00 0.00 3.58
1942 1958 5.013495 TCTGAAACATGGGATCTCTTTCACT 59.987 40.000 4.76 0.00 29.87 3.41
1999 2015 9.690913 ATAGCTTGCATATTAATACCATGATGT 57.309 29.630 0.00 0.00 0.00 3.06
2050 2071 4.261801 ACCAGGCAATACATGAACTACAC 58.738 43.478 0.00 0.00 0.00 2.90
2117 2139 8.195617 ACAACAAAAACATGTGAAGGTAAATG 57.804 30.769 0.00 0.00 32.81 2.32
2123 2145 7.918033 TGTACATACAACAAAAACATGTGAAGG 59.082 33.333 0.00 0.00 32.81 3.46
2294 2316 4.418526 AGGGTGAGAGAGAGATGGATTAGA 59.581 45.833 0.00 0.00 0.00 2.10
2314 2336 8.251026 AGAAACTCTTTTGTTTGTAAGAAAGGG 58.749 33.333 0.00 0.00 39.86 3.95
2412 2437 4.781934 ACAACTAACCTCTTTCAGCAACT 58.218 39.130 0.00 0.00 0.00 3.16
2425 2450 8.880878 AAAAATACACAATCCAACAACTAACC 57.119 30.769 0.00 0.00 0.00 2.85
2522 2552 3.705072 GCAACTAGCTACCCCTTAAGAGA 59.295 47.826 3.36 0.00 41.15 3.10
2576 2607 7.073265 GCTACAACTACTTTTAATGCGAACAA 58.927 34.615 0.00 0.00 0.00 2.83
3809 3849 0.912486 AGCGCCTACAAGAAGGGAAT 59.088 50.000 2.29 0.00 37.11 3.01
4318 4397 4.401202 TCAAACGGATGTATCTAGCACTGA 59.599 41.667 0.00 0.00 0.00 3.41
4335 4414 4.698276 CGGAATTACTTGTCACTCAAACG 58.302 43.478 0.00 0.00 35.48 3.60
4343 4422 3.325870 CTCTGTGCGGAATTACTTGTCA 58.674 45.455 0.00 0.00 0.00 3.58
4381 4460 3.846588 ACATACTCCACTTCCACTCCATT 59.153 43.478 0.00 0.00 0.00 3.16
4462 4541 2.200081 AGGGGCTAGATCAAAGCTTGA 58.800 47.619 16.77 0.00 45.01 3.02
4474 4553 0.322975 CATCGATCCCAAGGGGCTAG 59.677 60.000 5.08 0.00 43.94 3.42
4864 4943 9.939802 CATCTATCCTTGTCATTTATCATCTCA 57.060 33.333 0.00 0.00 0.00 3.27
5029 5108 3.629438 CAGACATGTGTGCATTTGACA 57.371 42.857 10.38 0.00 31.99 3.58
5345 5425 4.442753 GGCAAGGAAAAACAGATCCACAAA 60.443 41.667 0.00 0.00 38.23 2.83
5428 5508 8.045176 AGCAAAAGTTCATATCAGTAAGTTCC 57.955 34.615 0.00 0.00 0.00 3.62
5430 5510 7.121315 GGGAGCAAAAGTTCATATCAGTAAGTT 59.879 37.037 0.00 0.00 0.00 2.66
5432 5512 6.599244 TGGGAGCAAAAGTTCATATCAGTAAG 59.401 38.462 0.00 0.00 0.00 2.34
5500 5584 4.365111 AAAGGCCGGCCATGCTGA 62.365 61.111 45.13 0.00 37.02 4.26
5506 5590 1.678635 CTTCATGAAAGGCCGGCCA 60.679 57.895 45.13 27.20 38.92 5.36
5539 5623 0.033504 GGAACTCCACGCTGAACTCA 59.966 55.000 0.00 0.00 35.64 3.41
5653 5737 2.276116 GGTGGTCTCCTCGCACTGA 61.276 63.158 0.00 0.00 0.00 3.41
5680 5764 3.763897 TCATCTCCTCTTCGATGTTCACA 59.236 43.478 0.00 0.00 38.47 3.58
5743 5827 0.237761 CACCTTCGTCGTCGTCTTCT 59.762 55.000 1.33 0.00 38.33 2.85
5845 5949 7.057149 TCAGCAGCTACTTTAATTAAACGAC 57.943 36.000 6.54 0.00 0.00 4.34
5862 5966 2.632541 GCGCATCAGATCAGCAGC 59.367 61.111 0.30 0.00 0.00 5.25
5863 5967 2.595878 CCGCGCATCAGATCAGCAG 61.596 63.158 8.75 0.00 0.00 4.24
5864 5968 2.015227 TACCGCGCATCAGATCAGCA 62.015 55.000 8.75 0.00 0.00 4.41
5962 6068 7.982371 AAATAATACTGCTAGTACACGACAC 57.018 36.000 0.00 0.00 32.84 3.67
5973 6079 5.131977 TCTGGGCTCCAAAATAATACTGCTA 59.868 40.000 0.00 0.00 30.80 3.49
6001 6108 5.009631 CACCCAACCAAGTCTGAAATATCA 58.990 41.667 0.00 0.00 0.00 2.15
6026 6133 1.351707 CAGCACACACACGACCAAC 59.648 57.895 0.00 0.00 0.00 3.77
6081 6188 9.880157 AGCAGCACAAAGATTAAATAAATGAAT 57.120 25.926 0.00 0.00 0.00 2.57
6082 6189 9.357652 GAGCAGCACAAAGATTAAATAAATGAA 57.642 29.630 0.00 0.00 0.00 2.57
6083 6190 8.522003 TGAGCAGCACAAAGATTAAATAAATGA 58.478 29.630 0.00 0.00 0.00 2.57
6084 6191 8.692110 TGAGCAGCACAAAGATTAAATAAATG 57.308 30.769 0.00 0.00 0.00 2.32
6085 6192 8.922058 CTGAGCAGCACAAAGATTAAATAAAT 57.078 30.769 0.00 0.00 0.00 1.40
6159 6266 4.882427 TCCATTAACACGTTCCAGTCAAAA 59.118 37.500 0.00 0.00 0.00 2.44
6161 6268 4.074627 TCCATTAACACGTTCCAGTCAA 57.925 40.909 0.00 0.00 0.00 3.18
6187 6294 4.515191 GCCATCGAGCCATTAACAAGAATA 59.485 41.667 0.00 0.00 0.00 1.75
6188 6295 3.316308 GCCATCGAGCCATTAACAAGAAT 59.684 43.478 0.00 0.00 0.00 2.40
6189 6296 2.682856 GCCATCGAGCCATTAACAAGAA 59.317 45.455 0.00 0.00 0.00 2.52
6235 6342 2.289010 CCTGGCAATTTCCACAAAGTCC 60.289 50.000 0.00 0.00 31.74 3.85
6363 6481 6.496338 AATCCAAGACAACTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
6364 6482 6.488683 ACAAATCCAAGACAACTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
6365 6483 6.001460 ACAAATCCAAGACAACTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
6366 6484 6.149474 AGACAAATCCAAGACAACTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
6367 6485 7.133891 AGACAAATCCAAGACAACTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
6368 6486 9.436957 TCTAGACAAATCCAAGACAACTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
6369 6487 9.965902 ATCTAGACAAATCCAAGACAACTAATT 57.034 29.630 0.00 0.00 0.00 1.40
6371 6489 9.871238 GTATCTAGACAAATCCAAGACAACTAA 57.129 33.333 0.00 0.00 0.00 2.24
6372 6490 8.188799 CGTATCTAGACAAATCCAAGACAACTA 58.811 37.037 0.00 0.00 0.00 2.24
6373 6491 7.036220 CGTATCTAGACAAATCCAAGACAACT 58.964 38.462 0.00 0.00 0.00 3.16
6374 6492 6.255887 CCGTATCTAGACAAATCCAAGACAAC 59.744 42.308 0.00 0.00 0.00 3.32
6375 6493 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
6376 6494 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
6377 6495 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
6378 6496 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
6379 6497 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
6380 6498 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
6381 6499 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
6395 6513 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
6396 6514 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
6397 6515 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
6398 6516 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
6401 6519 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
6405 6523 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
6406 6524 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
6407 6525 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
6408 6526 7.014808 GGAGGTATCTAGCACTAAAATGAGTCT 59.985 40.741 0.00 0.00 0.00 3.24
6409 6527 7.149307 GGAGGTATCTAGCACTAAAATGAGTC 58.851 42.308 0.00 0.00 0.00 3.36
6410 6528 6.239064 CGGAGGTATCTAGCACTAAAATGAGT 60.239 42.308 0.00 0.00 0.00 3.41
6411 6529 6.153067 CGGAGGTATCTAGCACTAAAATGAG 58.847 44.000 0.00 0.00 0.00 2.90
6412 6530 5.597182 ACGGAGGTATCTAGCACTAAAATGA 59.403 40.000 0.00 0.00 0.00 2.57
6413 6531 5.844004 ACGGAGGTATCTAGCACTAAAATG 58.156 41.667 0.00 0.00 0.00 2.32
6414 6532 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
6427 6545 9.233649 CTTAGATTTGTCTAGATACGGAGGTAT 57.766 37.037 0.00 0.00 42.01 2.73
6428 6546 8.435187 TCTTAGATTTGTCTAGATACGGAGGTA 58.565 37.037 0.00 0.00 0.00 3.08
6429 6547 7.229106 GTCTTAGATTTGTCTAGATACGGAGGT 59.771 40.741 0.00 0.00 0.00 3.85
6430 6548 7.228906 TGTCTTAGATTTGTCTAGATACGGAGG 59.771 40.741 0.00 0.00 0.00 4.30
6431 6549 8.155821 TGTCTTAGATTTGTCTAGATACGGAG 57.844 38.462 0.00 0.00 0.00 4.63
6432 6550 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
6433 6551 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
6444 6562 9.746711 CGTTCTGAATTACTTGTCTTAGATTTG 57.253 33.333 0.00 0.00 0.00 2.32
6445 6563 8.936864 CCGTTCTGAATTACTTGTCTTAGATTT 58.063 33.333 0.00 0.00 0.00 2.17
6446 6564 8.311836 TCCGTTCTGAATTACTTGTCTTAGATT 58.688 33.333 0.00 0.00 0.00 2.40
6447 6565 7.837863 TCCGTTCTGAATTACTTGTCTTAGAT 58.162 34.615 0.00 0.00 0.00 1.98
6448 6566 7.223260 TCCGTTCTGAATTACTTGTCTTAGA 57.777 36.000 0.00 0.00 0.00 2.10
6449 6567 6.531948 CCTCCGTTCTGAATTACTTGTCTTAG 59.468 42.308 0.00 0.00 0.00 2.18
6450 6568 6.395629 CCTCCGTTCTGAATTACTTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
6451 6569 5.238583 CCTCCGTTCTGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
6452 6570 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
6453 6571 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
6454 6572 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
6455 6573 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
6456 6574 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
6457 6575 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
6458 6576 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
6459 6577 3.703052 GGTACTCCCTCCGTTCTGAATTA 59.297 47.826 0.00 0.00 0.00 1.40
6460 6578 2.500504 GGTACTCCCTCCGTTCTGAATT 59.499 50.000 0.00 0.00 0.00 2.17
6461 6579 2.108970 GGTACTCCCTCCGTTCTGAAT 58.891 52.381 0.00 0.00 0.00 2.57
6462 6580 1.203087 TGGTACTCCCTCCGTTCTGAA 60.203 52.381 0.00 0.00 0.00 3.02
6463 6581 0.406750 TGGTACTCCCTCCGTTCTGA 59.593 55.000 0.00 0.00 0.00 3.27
6464 6582 0.818296 CTGGTACTCCCTCCGTTCTG 59.182 60.000 0.00 0.00 0.00 3.02
6465 6583 0.971447 GCTGGTACTCCCTCCGTTCT 60.971 60.000 0.00 0.00 0.00 3.01
6466 6584 1.255667 TGCTGGTACTCCCTCCGTTC 61.256 60.000 0.00 0.00 0.00 3.95
6467 6585 0.834687 TTGCTGGTACTCCCTCCGTT 60.835 55.000 0.00 0.00 0.00 4.44
6468 6586 1.229082 TTGCTGGTACTCCCTCCGT 60.229 57.895 0.00 0.00 0.00 4.69
6469 6587 1.517832 CTTGCTGGTACTCCCTCCG 59.482 63.158 0.00 0.00 0.00 4.63
6470 6588 1.222113 GCTTGCTGGTACTCCCTCC 59.778 63.158 0.00 0.00 0.00 4.30
6471 6589 0.107945 CTGCTTGCTGGTACTCCCTC 60.108 60.000 0.00 0.00 0.00 4.30
6472 6590 1.986413 CTGCTTGCTGGTACTCCCT 59.014 57.895 0.00 0.00 0.00 4.20
6473 6591 1.746991 GCTGCTTGCTGGTACTCCC 60.747 63.158 0.00 0.00 38.95 4.30
6474 6592 3.896479 GCTGCTTGCTGGTACTCC 58.104 61.111 0.00 0.00 38.95 3.85
6500 6618 4.539083 TCGTGTGCCCACTTGCGT 62.539 61.111 0.00 0.00 39.55 5.24
6589 6707 3.617263 GCCGTTAAGTAGATTGTCACTGG 59.383 47.826 0.00 0.00 0.00 4.00
6591 6709 4.803098 AGCCGTTAAGTAGATTGTCACT 57.197 40.909 0.00 0.00 0.00 3.41
6592 6710 5.648572 ACTAGCCGTTAAGTAGATTGTCAC 58.351 41.667 0.00 0.00 0.00 3.67
6597 6715 6.694447 TCAACAACTAGCCGTTAAGTAGATT 58.306 36.000 0.00 0.00 33.63 2.40
6691 6809 8.555166 TCTTCTTGCTGTTGTTTTATTTTACG 57.445 30.769 0.00 0.00 0.00 3.18
6708 6826 6.237915 CGGCCAAATGATAATTTTCTTCTTGC 60.238 38.462 2.24 0.00 0.00 4.01
6771 6898 9.632638 ACCAATTACTTCTACTCGTATTACCTA 57.367 33.333 0.00 0.00 0.00 3.08
6772 6899 8.530804 ACCAATTACTTCTACTCGTATTACCT 57.469 34.615 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.