Multiple sequence alignment - TraesCS6B01G274500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G274500 chr6B 100.000 3024 0 0 1 3024 495807993 495804970 0.000000e+00 5585.0
1 TraesCS6B01G274500 chr6B 85.441 261 36 2 1282 1541 495543774 495543515 1.380000e-68 270.0
2 TraesCS6B01G274500 chr6D 92.257 1666 81 17 410 2055 326539493 326541130 0.000000e+00 2318.0
3 TraesCS6B01G274500 chr6D 93.165 278 13 3 11 284 326539209 326539484 1.310000e-108 403.0
4 TraesCS6B01G274500 chr6D 85.753 365 48 3 2659 3023 472671243 472671603 1.700000e-102 383.0
5 TraesCS6B01G274500 chr6D 85.271 258 36 2 1282 1538 326760710 326760966 6.430000e-67 265.0
6 TraesCS6B01G274500 chr6D 90.805 87 7 1 2580 2665 58831692 58831606 6.850000e-22 115.0
7 TraesCS6B01G274500 chr6D 97.368 38 1 0 2056 2093 422292765 422292802 7.000000e-07 65.8
8 TraesCS6B01G274500 chr6A 91.418 1678 88 24 410 2056 465231040 465232692 0.000000e+00 2250.0
9 TraesCS6B01G274500 chr6A 92.279 272 13 3 20 284 465230761 465231031 2.200000e-101 379.0
10 TraesCS6B01G274500 chr6A 85.824 261 29 4 1282 1538 465389786 465390042 1.380000e-68 270.0
11 TraesCS6B01G274500 chr6A 100.000 127 0 0 286 412 1814905 1815031 5.040000e-58 235.0
12 TraesCS6B01G274500 chr6A 95.652 46 1 1 2052 2096 457664105 457664150 4.180000e-09 73.1
13 TraesCS6B01G274500 chr4D 86.720 497 51 10 2095 2579 34458051 34457558 3.430000e-149 538.0
14 TraesCS6B01G274500 chr4D 87.158 366 43 3 2659 3024 501677649 501678010 2.170000e-111 412.0
15 TraesCS6B01G274500 chr4D 94.805 77 3 1 2585 2661 329286967 329286892 5.300000e-23 119.0
16 TraesCS6B01G274500 chr4D 95.349 43 1 1 2053 2094 3837029 3837071 1.950000e-07 67.6
17 TraesCS6B01G274500 chr2D 86.465 495 51 10 2093 2575 134489687 134489197 2.060000e-146 529.0
18 TraesCS6B01G274500 chr2D 84.902 510 59 12 2093 2591 627684519 627685021 1.620000e-137 499.0
19 TraesCS6B01G274500 chr2D 87.432 366 43 1 2659 3024 48204720 48204358 4.660000e-113 418.0
20 TraesCS6B01G274500 chr2D 89.961 259 26 0 1283 1541 527293783 527293525 4.830000e-88 335.0
21 TraesCS6B01G274500 chr2D 77.882 425 57 26 2626 3024 460359091 460359504 2.340000e-56 230.0
22 TraesCS6B01G274500 chr2D 93.671 79 4 1 2585 2663 605405440 605405363 1.900000e-22 117.0
23 TraesCS6B01G274500 chr5D 86.263 495 50 12 2093 2575 71552200 71551712 3.450000e-144 521.0
24 TraesCS6B01G274500 chr5D 88.011 367 42 2 2659 3024 464911597 464911962 1.670000e-117 433.0
25 TraesCS6B01G274500 chr5D 87.467 375 32 10 2659 3024 469084905 469084537 4.660000e-113 418.0
26 TraesCS6B01G274500 chr5D 93.671 79 4 1 2585 2663 71550726 71550649 1.900000e-22 117.0
27 TraesCS6B01G274500 chr5D 92.593 81 5 1 2585 2665 44416871 44416950 6.850000e-22 115.0
28 TraesCS6B01G274500 chr5D 93.617 47 2 1 2050 2095 14600749 14600703 5.410000e-08 69.4
29 TraesCS6B01G274500 chr3B 85.115 524 48 5 2095 2591 42735965 42736485 2.690000e-140 508.0
30 TraesCS6B01G274500 chr3B 83.437 483 48 15 2095 2571 539093620 539093164 1.300000e-113 420.0
31 TraesCS6B01G274500 chr3B 97.778 135 2 1 286 419 582286071 582285937 6.520000e-57 231.0
32 TraesCS6B01G274500 chr3B 97.872 47 1 0 2050 2096 620238268 620238222 6.950000e-12 82.4
33 TraesCS6B01G274500 chr7A 85.777 457 56 6 2142 2591 734546397 734545943 2.730000e-130 475.0
34 TraesCS6B01G274500 chr4A 83.122 551 41 19 2092 2591 734895983 734895434 3.550000e-124 455.0
35 TraesCS6B01G274500 chr4A 80.263 380 59 12 2659 3024 724561806 724561429 3.840000e-69 272.0
36 TraesCS6B01G274500 chr4A 100.000 127 0 0 286 412 731676504 731676378 5.040000e-58 235.0
37 TraesCS6B01G274500 chr7B 83.943 492 52 11 2124 2591 118246642 118247130 2.140000e-121 446.0
38 TraesCS6B01G274500 chr3D 85.681 426 49 8 2161 2575 453219627 453219203 3.580000e-119 438.0
39 TraesCS6B01G274500 chr3D 84.324 370 50 7 2659 3024 25389908 25389543 3.710000e-94 355.0
40 TraesCS6B01G274500 chr3D 100.000 44 0 0 2053 2096 237925265 237925222 6.950000e-12 82.4
41 TraesCS6B01G274500 chr3D 100.000 41 0 0 2056 2096 224515224 224515184 3.230000e-10 76.8
42 TraesCS6B01G274500 chr3D 97.561 41 1 0 2056 2096 565680186 565680226 1.500000e-08 71.3
43 TraesCS6B01G274500 chr5A 87.200 375 37 4 2659 3024 342575441 342575813 1.680000e-112 416.0
44 TraesCS6B01G274500 chr5A 82.887 485 58 14 2126 2591 376836271 376835793 2.170000e-111 412.0
45 TraesCS6B01G274500 chr5A 85.678 391 41 11 2093 2472 548646833 548647219 6.070000e-107 398.0
46 TraesCS6B01G274500 chr5A 85.831 367 39 4 2661 3024 5975307 5975663 7.910000e-101 377.0
47 TraesCS6B01G274500 chr5A 99.219 128 1 0 286 413 154345533 154345660 6.520000e-57 231.0
48 TraesCS6B01G274500 chr5A 100.000 42 0 0 2055 2096 580593656 580593615 8.990000e-11 78.7
49 TraesCS6B01G274500 chr5A 97.619 42 1 0 2053 2094 623002971 623003012 4.180000e-09 73.1
50 TraesCS6B01G274500 chr5B 86.757 370 44 4 2659 3024 698273077 698273445 1.010000e-109 407.0
51 TraesCS6B01G274500 chr5B 94.937 79 3 1 2585 2663 485157305 485157382 4.090000e-24 122.0
52 TraesCS6B01G274500 chr5B 100.000 44 0 0 2053 2096 263095798 263095755 6.950000e-12 82.4
53 TraesCS6B01G274500 chr1D 86.339 366 41 4 2659 3024 439062048 439061692 1.020000e-104 390.0
54 TraesCS6B01G274500 chr1D 91.429 210 17 1 2387 2595 351513152 351512943 1.370000e-73 287.0
55 TraesCS6B01G274500 chr1D 92.593 81 5 1 2585 2665 84872772 84872693 6.850000e-22 115.0
56 TraesCS6B01G274500 chr1D 97.561 41 1 0 2056 2096 230543348 230543388 1.500000e-08 71.3
57 TraesCS6B01G274500 chr1D 95.122 41 2 0 2056 2096 230520181 230520221 7.000000e-07 65.8
58 TraesCS6B01G274500 chr1D 95.000 40 2 0 2056 2095 277081821 277081860 2.520000e-06 63.9
59 TraesCS6B01G274500 chr1D 95.000 40 2 0 2056 2095 447759947 447759986 2.520000e-06 63.9
60 TraesCS6B01G274500 chr7D 83.704 405 54 11 2626 3024 37809200 37809598 3.680000e-99 372.0
61 TraesCS6B01G274500 chr7D 94.937 79 3 1 2585 2663 116430642 116430565 4.090000e-24 122.0
62 TraesCS6B01G274500 chr7D 100.000 39 0 0 2056 2094 162017701 162017663 4.180000e-09 73.1
63 TraesCS6B01G274500 chr2B 89.575 259 27 0 1283 1541 624355484 624355226 2.250000e-86 329.0
64 TraesCS6B01G274500 chr2B 82.796 279 38 10 1268 1541 624287311 624287038 1.080000e-59 241.0
65 TraesCS6B01G274500 chr2B 100.000 128 0 0 286 413 627325099 627325226 1.400000e-58 237.0
66 TraesCS6B01G274500 chr2B 93.878 147 6 3 282 428 411977596 411977453 5.080000e-53 219.0
67 TraesCS6B01G274500 chr2B 91.463 82 6 1 2585 2666 202593053 202592973 8.860000e-21 111.0
68 TraesCS6B01G274500 chr2A 89.575 259 27 0 1283 1541 672292457 672292199 2.250000e-86 329.0
69 TraesCS6B01G274500 chr4B 81.546 401 52 15 2626 3024 427297898 427298278 8.140000e-81 311.0
70 TraesCS6B01G274500 chr4B 98.473 131 2 0 283 413 210282887 210282757 6.520000e-57 231.0
71 TraesCS6B01G274500 chr4B 100.000 44 0 0 2053 2096 63296412 63296455 6.950000e-12 82.4
72 TraesCS6B01G274500 chr4B 100.000 44 0 0 2053 2096 393198354 393198311 6.950000e-12 82.4
73 TraesCS6B01G274500 chr4B 100.000 44 0 0 2053 2096 415478332 415478289 6.950000e-12 82.4
74 TraesCS6B01G274500 chr4B 100.000 44 0 0 2053 2096 486025273 486025316 6.950000e-12 82.4
75 TraesCS6B01G274500 chr4B 100.000 39 0 0 2056 2094 601197670 601197632 4.180000e-09 73.1
76 TraesCS6B01G274500 chr1B 80.789 380 58 11 2659 3024 117461605 117461227 1.770000e-72 283.0
77 TraesCS6B01G274500 chr1B 95.105 143 5 2 281 422 520100253 520100394 1.090000e-54 224.0
78 TraesCS6B01G274500 chr1B 100.000 44 0 0 2053 2096 112594088 112594045 6.950000e-12 82.4
79 TraesCS6B01G274500 chr1B 100.000 44 0 0 2053 2096 167137088 167137045 6.950000e-12 82.4
80 TraesCS6B01G274500 chr3A 99.219 128 1 0 285 412 569426551 569426424 6.520000e-57 231.0
81 TraesCS6B01G274500 chrUn 97.917 48 0 1 2050 2096 37388240 37388193 6.950000e-12 82.4
82 TraesCS6B01G274500 chrUn 100.000 41 0 0 2056 2096 100758225 100758185 3.230000e-10 76.8
83 TraesCS6B01G274500 chrUn 97.561 41 1 0 2056 2096 93388647 93388687 1.500000e-08 71.3
84 TraesCS6B01G274500 chr1A 100.000 39 0 0 2056 2094 319435572 319435534 4.180000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G274500 chr6B 495804970 495807993 3023 True 5585.0 5585 100.0000 1 3024 1 chr6B.!!$R2 3023
1 TraesCS6B01G274500 chr6D 326539209 326541130 1921 False 1360.5 2318 92.7110 11 2055 2 chr6D.!!$F4 2044
2 TraesCS6B01G274500 chr6A 465230761 465232692 1931 False 1314.5 2250 91.8485 20 2056 2 chr6A.!!$F4 2036
3 TraesCS6B01G274500 chr2D 627684519 627685021 502 False 499.0 499 84.9020 2093 2591 1 chr2D.!!$F2 498
4 TraesCS6B01G274500 chr5D 71550649 71552200 1551 True 319.0 521 89.9670 2093 2663 2 chr5D.!!$R3 570
5 TraesCS6B01G274500 chr3B 42735965 42736485 520 False 508.0 508 85.1150 2095 2591 1 chr3B.!!$F1 496
6 TraesCS6B01G274500 chr4A 734895434 734895983 549 True 455.0 455 83.1220 2092 2591 1 chr4A.!!$R3 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 307 0.030369 CCGAAATCGTACTCCCTCCG 59.970 60.0 1.79 0.0 37.74 4.63 F
414 426 0.406750 TCAGAACGGAGGGAGTACCA 59.593 55.0 0.00 0.0 43.89 3.25 F
529 541 0.681733 GAGTCTTGCTCCCAGTGACA 59.318 55.0 0.00 0.0 38.27 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1099 1125 0.103026 TGATGGCAGTCGAATCGGAG 59.897 55.0 1.76 0.00 0.00 4.63 R
1889 1932 0.317436 TGGCATGACGCGAAACAAAC 60.317 50.0 15.93 6.47 43.84 2.93 R
2426 2536 0.324943 ACGCCCAGCAATACAGAAGT 59.675 50.0 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 1.410004 TCTGTCAGTCAGGGTCGTTT 58.590 50.000 0.00 0.00 43.76 3.60
93 94 2.169769 TCTGTCAGTCAGGGTCGTTTTT 59.830 45.455 0.00 0.00 43.76 1.94
119 120 6.039941 TGACTGGAACGTGTTAATGGAATTTT 59.960 34.615 0.00 0.00 37.87 1.82
120 121 7.228906 TGACTGGAACGTGTTAATGGAATTTTA 59.771 33.333 0.00 0.00 37.87 1.52
121 122 8.117813 ACTGGAACGTGTTAATGGAATTTTAT 57.882 30.769 0.00 0.00 37.87 1.40
167 168 1.593006 CGGCACCAATAGTAAAGCGAG 59.407 52.381 0.00 0.00 0.00 5.03
234 246 0.890996 CTTGCTTCCGGGTCTTGCTT 60.891 55.000 0.00 0.00 0.00 3.91
239 251 0.766131 TTCCGGGTCTTGCTTACCAA 59.234 50.000 0.00 0.00 38.87 3.67
284 296 3.603857 GCATATCGTTGTTCCCGAAATCG 60.604 47.826 0.00 0.00 37.93 3.34
286 298 2.721274 TCGTTGTTCCCGAAATCGTA 57.279 45.000 1.79 0.00 37.74 3.43
287 299 2.327568 TCGTTGTTCCCGAAATCGTAC 58.672 47.619 1.79 0.00 37.74 3.67
288 300 2.030007 TCGTTGTTCCCGAAATCGTACT 60.030 45.455 1.79 0.00 37.74 2.73
289 301 2.343544 CGTTGTTCCCGAAATCGTACTC 59.656 50.000 1.79 0.00 37.74 2.59
290 302 2.660189 TGTTCCCGAAATCGTACTCC 57.340 50.000 1.79 0.00 37.74 3.85
291 303 1.205417 TGTTCCCGAAATCGTACTCCC 59.795 52.381 1.79 0.00 37.74 4.30
292 304 1.479730 GTTCCCGAAATCGTACTCCCT 59.520 52.381 1.79 0.00 37.74 4.20
293 305 1.396653 TCCCGAAATCGTACTCCCTC 58.603 55.000 1.79 0.00 37.74 4.30
294 306 0.388294 CCCGAAATCGTACTCCCTCC 59.612 60.000 1.79 0.00 37.74 4.30
295 307 0.030369 CCGAAATCGTACTCCCTCCG 59.970 60.000 1.79 0.00 37.74 4.63
296 308 0.737219 CGAAATCGTACTCCCTCCGT 59.263 55.000 0.00 0.00 34.11 4.69
297 309 1.133790 CGAAATCGTACTCCCTCCGTT 59.866 52.381 0.00 0.00 34.11 4.44
298 310 2.793933 CGAAATCGTACTCCCTCCGTTC 60.794 54.545 0.00 0.00 34.11 3.95
299 311 1.109609 AATCGTACTCCCTCCGTTCC 58.890 55.000 0.00 0.00 0.00 3.62
300 312 1.099879 ATCGTACTCCCTCCGTTCCG 61.100 60.000 0.00 0.00 0.00 4.30
301 313 1.746615 CGTACTCCCTCCGTTCCGA 60.747 63.158 0.00 0.00 0.00 4.55
302 314 1.308069 CGTACTCCCTCCGTTCCGAA 61.308 60.000 0.00 0.00 0.00 4.30
303 315 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
304 316 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
305 317 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
306 318 1.755380 ACTCCCTCCGTTCCGAATTAG 59.245 52.381 0.00 0.00 0.00 1.73
307 319 1.755380 CTCCCTCCGTTCCGAATTAGT 59.245 52.381 0.00 0.00 0.00 2.24
308 320 2.167900 CTCCCTCCGTTCCGAATTAGTT 59.832 50.000 0.00 0.00 0.00 2.24
309 321 2.093869 TCCCTCCGTTCCGAATTAGTTG 60.094 50.000 0.00 0.00 0.00 3.16
310 322 2.354403 CCCTCCGTTCCGAATTAGTTGT 60.354 50.000 0.00 0.00 0.00 3.32
311 323 2.928116 CCTCCGTTCCGAATTAGTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
312 324 3.368116 CCTCCGTTCCGAATTAGTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
313 325 4.243270 CTCCGTTCCGAATTAGTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
314 326 3.991773 TCCGTTCCGAATTAGTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
315 327 3.124636 CCGTTCCGAATTAGTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
316 328 3.991773 CGTTCCGAATTAGTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
317 329 4.630069 CGTTCCGAATTAGTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
318 330 5.121768 CGTTCCGAATTAGTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
319 331 6.348213 CGTTCCGAATTAGTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
320 332 6.494893 TCCGAATTAGTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
321 333 6.001460 TCCGAATTAGTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
322 334 6.148811 TCCGAATTAGTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
323 335 6.149474 CCGAATTAGTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
324 336 7.333423 CCGAATTAGTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
325 337 8.383619 CGAATTAGTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
326 338 9.436957 GAATTAGTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
327 339 9.965902 AATTAGTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
329 341 9.871238 TTAGTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
330 342 7.036220 AGTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
331 343 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
332 344 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
333 345 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
334 346 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
335 347 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
336 348 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
337 349 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
353 365 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
354 366 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
355 367 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
356 368 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
359 371 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
363 375 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
364 376 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
365 377 7.947282 AGACTCATTTTAGTGCTAGATACCTC 58.053 38.462 0.00 0.00 0.00 3.85
366 378 7.014808 AGACTCATTTTAGTGCTAGATACCTCC 59.985 40.741 0.00 0.00 0.00 4.30
367 379 6.085555 TCATTTTAGTGCTAGATACCTCCG 57.914 41.667 0.00 0.00 0.00 4.63
368 380 5.597182 TCATTTTAGTGCTAGATACCTCCGT 59.403 40.000 0.00 0.00 0.00 4.69
369 381 6.774170 TCATTTTAGTGCTAGATACCTCCGTA 59.226 38.462 0.00 0.00 0.00 4.02
370 382 7.450634 TCATTTTAGTGCTAGATACCTCCGTAT 59.549 37.037 0.00 0.00 37.92 3.06
382 394 7.690952 GATACCTCCGTATCTAGACAAATCT 57.309 40.000 0.00 0.00 45.11 2.40
383 395 8.789825 GATACCTCCGTATCTAGACAAATCTA 57.210 38.462 0.00 0.00 45.11 1.98
384 396 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
385 397 7.513371 ACCTCCGTATCTAGACAAATCTAAG 57.487 40.000 0.00 0.00 36.98 2.18
386 398 7.288560 ACCTCCGTATCTAGACAAATCTAAGA 58.711 38.462 0.00 0.00 36.98 2.10
387 399 7.229106 ACCTCCGTATCTAGACAAATCTAAGAC 59.771 40.741 0.00 0.00 36.98 3.01
388 400 7.228906 CCTCCGTATCTAGACAAATCTAAGACA 59.771 40.741 0.00 0.00 36.98 3.41
389 401 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
390 402 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
391 403 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
402 414 9.746711 CAAATCTAAGACAAGTAATTCAGAACG 57.253 33.333 0.00 0.00 0.00 3.95
403 415 8.480643 AATCTAAGACAAGTAATTCAGAACGG 57.519 34.615 0.00 0.00 0.00 4.44
404 416 7.223260 TCTAAGACAAGTAATTCAGAACGGA 57.777 36.000 0.00 0.00 0.00 4.69
405 417 7.313646 TCTAAGACAAGTAATTCAGAACGGAG 58.686 38.462 0.00 0.00 0.00 4.63
406 418 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
407 419 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
408 420 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
414 426 0.406750 TCAGAACGGAGGGAGTACCA 59.593 55.000 0.00 0.00 43.89 3.25
432 444 2.033141 GCAAGCAGCTCAGTCCCA 59.967 61.111 0.00 0.00 41.15 4.37
471 483 2.980548 ACAGTAACCACCACCTTCCTA 58.019 47.619 0.00 0.00 0.00 2.94
529 541 0.681733 GAGTCTTGCTCCCAGTGACA 59.318 55.000 0.00 0.00 38.27 3.58
623 635 2.350498 GTGGCCGTGTGTATGTTATGTC 59.650 50.000 0.00 0.00 0.00 3.06
701 722 6.533367 GCTTCTTATACAACTGGAGTTCTGAG 59.467 42.308 0.00 0.00 35.83 3.35
704 725 8.645814 TCTTATACAACTGGAGTTCTGAGTTA 57.354 34.615 0.00 0.00 35.83 2.24
706 727 4.608948 ACAACTGGAGTTCTGAGTTAGG 57.391 45.455 0.00 0.00 35.83 2.69
707 728 3.967987 ACAACTGGAGTTCTGAGTTAGGT 59.032 43.478 0.00 0.00 35.83 3.08
708 729 5.145564 ACAACTGGAGTTCTGAGTTAGGTA 58.854 41.667 0.00 0.00 35.83 3.08
709 730 5.601313 ACAACTGGAGTTCTGAGTTAGGTAA 59.399 40.000 0.00 0.00 35.83 2.85
710 731 6.270231 ACAACTGGAGTTCTGAGTTAGGTAAT 59.730 38.462 0.00 0.00 35.83 1.89
711 732 7.453752 ACAACTGGAGTTCTGAGTTAGGTAATA 59.546 37.037 0.00 0.00 35.83 0.98
712 733 7.407393 ACTGGAGTTCTGAGTTAGGTAATAC 57.593 40.000 0.00 0.00 0.00 1.89
713 734 6.095160 ACTGGAGTTCTGAGTTAGGTAATACG 59.905 42.308 0.00 0.00 0.00 3.06
714 735 6.182627 TGGAGTTCTGAGTTAGGTAATACGA 58.817 40.000 0.00 0.00 0.00 3.43
715 736 6.318144 TGGAGTTCTGAGTTAGGTAATACGAG 59.682 42.308 0.00 0.00 0.00 4.18
716 737 6.318396 GGAGTTCTGAGTTAGGTAATACGAGT 59.682 42.308 0.00 0.00 0.00 4.18
717 738 7.497249 GGAGTTCTGAGTTAGGTAATACGAGTA 59.503 40.741 0.00 0.00 0.00 2.59
718 739 8.436046 AGTTCTGAGTTAGGTAATACGAGTAG 57.564 38.462 0.00 0.00 0.00 2.57
719 740 8.263640 AGTTCTGAGTTAGGTAATACGAGTAGA 58.736 37.037 0.00 0.00 0.00 2.59
720 741 8.887717 GTTCTGAGTTAGGTAATACGAGTAGAA 58.112 37.037 0.00 0.00 0.00 2.10
721 742 8.659925 TCTGAGTTAGGTAATACGAGTAGAAG 57.340 38.462 0.00 0.00 0.00 2.85
722 743 8.263640 TCTGAGTTAGGTAATACGAGTAGAAGT 58.736 37.037 0.00 0.00 0.00 3.01
723 744 9.539825 CTGAGTTAGGTAATACGAGTAGAAGTA 57.460 37.037 0.00 0.00 0.00 2.24
724 745 9.890629 TGAGTTAGGTAATACGAGTAGAAGTAA 57.109 33.333 0.00 0.00 0.00 2.24
729 750 8.530804 AGGTAATACGAGTAGAAGTAATTGGT 57.469 34.615 0.00 0.00 0.00 3.67
730 751 9.632638 AGGTAATACGAGTAGAAGTAATTGGTA 57.367 33.333 0.00 0.00 0.00 3.25
749 770 3.039202 GCATTTGGACGGTCGCTGG 62.039 63.158 1.43 0.00 0.00 4.85
831 854 3.633986 AGCTTGCAAATATCTAACTGGCC 59.366 43.478 0.00 0.00 0.00 5.36
860 883 3.033094 TCGCGCAGATTTGTTAATTCG 57.967 42.857 8.75 0.00 0.00 3.34
959 984 3.756933 AAACGTAGGCTTCCACTAACA 57.243 42.857 0.00 0.00 0.00 2.41
960 985 3.314541 AACGTAGGCTTCCACTAACAG 57.685 47.619 0.00 0.00 0.00 3.16
1005 1031 3.415087 CCTTCCCTCCCCAGCCTG 61.415 72.222 0.00 0.00 0.00 4.85
1021 1047 1.673665 CTGGAGCCTTGTCTGGTGC 60.674 63.158 0.00 0.00 0.00 5.01
1022 1048 2.121992 CTGGAGCCTTGTCTGGTGCT 62.122 60.000 0.00 0.00 36.62 4.40
1023 1049 4.292784 GAGCCTTGTCTGGTGCTC 57.707 61.111 0.00 0.00 42.89 4.26
1024 1050 1.376553 GAGCCTTGTCTGGTGCTCC 60.377 63.158 0.00 0.00 43.40 4.70
1099 1125 1.854280 TCCTCTTCCTCCTCCTACTCC 59.146 57.143 0.00 0.00 0.00 3.85
1105 1131 0.774908 CCTCCTCCTACTCCTCCGAT 59.225 60.000 0.00 0.00 0.00 4.18
1109 1135 1.202782 CCTCCTACTCCTCCGATTCGA 60.203 57.143 7.83 0.00 0.00 3.71
1113 1139 1.002251 CTACTCCTCCGATTCGACTGC 60.002 57.143 7.83 0.00 0.00 4.40
1174 1200 2.071540 CATCTGAAGCGCAAGAGACAA 58.928 47.619 11.47 0.00 43.02 3.18
1183 1209 1.166531 GCAAGAGACAAACCGCCACT 61.167 55.000 0.00 0.00 0.00 4.00
1198 1224 1.551908 CCACTTCTCCTGCTGCTCCT 61.552 60.000 0.00 0.00 0.00 3.69
1200 1226 1.221293 CTTCTCCTGCTGCTCCTGG 59.779 63.158 0.00 0.00 0.00 4.45
1555 1596 4.625800 GCCCAATGCGAGTCTTCT 57.374 55.556 0.00 0.00 0.00 2.85
1845 1886 1.893801 CCAGAAGAGAACACCCGTAGT 59.106 52.381 0.00 0.00 0.00 2.73
1856 1897 1.893808 CCCGTAGTCATGGGCATGC 60.894 63.158 9.90 9.90 44.26 4.06
1889 1932 4.384247 TCATTTTTCCAATTACTTTGCGCG 59.616 37.500 0.00 0.00 33.73 6.86
1894 1937 2.033550 TCCAATTACTTTGCGCGTTTGT 59.966 40.909 8.43 4.69 33.73 2.83
1986 2029 1.722011 GGTGTGTGTTGTATCCCGAG 58.278 55.000 0.00 0.00 0.00 4.63
2063 2106 9.725206 ATACCCTCTCTAAACTTTTCTATACCA 57.275 33.333 0.00 0.00 0.00 3.25
2064 2107 7.849160 ACCCTCTCTAAACTTTTCTATACCAC 58.151 38.462 0.00 0.00 0.00 4.16
2065 2108 7.679025 ACCCTCTCTAAACTTTTCTATACCACT 59.321 37.037 0.00 0.00 0.00 4.00
2066 2109 9.198475 CCCTCTCTAAACTTTTCTATACCACTA 57.802 37.037 0.00 0.00 0.00 2.74
2086 2129 7.588143 CACTATATAGTGTGCCAATAGCTTC 57.412 40.000 27.86 0.00 46.51 3.86
2087 2130 7.154656 CACTATATAGTGTGCCAATAGCTTCA 58.845 38.462 27.86 0.00 46.51 3.02
2088 2131 7.657354 CACTATATAGTGTGCCAATAGCTTCAA 59.343 37.037 27.86 0.00 46.51 2.69
2089 2132 8.210946 ACTATATAGTGTGCCAATAGCTTCAAA 58.789 33.333 14.71 0.00 37.51 2.69
2090 2133 9.224267 CTATATAGTGTGCCAATAGCTTCAAAT 57.776 33.333 1.21 0.00 44.23 2.32
2164 2216 2.356135 GCTCACCCAGCGATTTTTAGA 58.644 47.619 0.00 0.00 38.76 2.10
2192 2244 1.686325 GCGATCTAGGTCCCAGCCAA 61.686 60.000 0.00 0.00 0.00 4.52
2254 2309 2.491693 TGATCCATTCCCGCTTCAAAAC 59.508 45.455 0.00 0.00 0.00 2.43
2261 2316 1.285641 CCGCTTCAAAACACGCCAT 59.714 52.632 0.00 0.00 0.00 4.40
2276 2331 1.143838 CCATGAGTCCGGCGATCAA 59.856 57.895 9.30 0.00 0.00 2.57
2310 2387 1.872952 CGATCAACTTGCCACAGTTCA 59.127 47.619 0.00 0.00 34.60 3.18
2316 2393 1.001974 ACTTGCCACAGTTCAGCGATA 59.998 47.619 0.00 0.00 0.00 2.92
2372 2449 2.121786 CATAGGCAATGCATCAAACGC 58.878 47.619 7.79 0.00 0.00 4.84
2450 2589 1.447140 GTATTGCTGGGCGTCGTGA 60.447 57.895 0.00 0.00 0.00 4.35
2571 2710 2.111999 TACCACGCCTTGAGCTGCTT 62.112 55.000 2.53 0.00 40.39 3.91
2623 3737 4.362476 TGAGAAGAGCAGCGCGCA 62.362 61.111 35.10 4.83 46.13 6.09
2665 3779 3.075005 GGCTGAGTAGGCCGGTGA 61.075 66.667 1.90 0.00 43.29 4.02
2666 3780 2.656069 GGCTGAGTAGGCCGGTGAA 61.656 63.158 1.90 0.00 43.29 3.18
2667 3781 1.153549 GCTGAGTAGGCCGGTGAAG 60.154 63.158 1.90 0.00 0.00 3.02
2668 3782 1.517832 CTGAGTAGGCCGGTGAAGG 59.482 63.158 1.90 0.00 0.00 3.46
2678 3792 4.785453 GGTGAAGGCAGGCGAGGG 62.785 72.222 0.00 0.00 0.00 4.30
2701 3815 4.195334 GCTGGGCCGGATGACCAT 62.195 66.667 18.84 0.00 33.07 3.55
2702 3816 2.203252 CTGGGCCGGATGACCATG 60.203 66.667 6.48 0.00 33.07 3.66
2703 3817 3.779850 CTGGGCCGGATGACCATGG 62.780 68.421 11.19 11.19 33.07 3.66
2704 3818 4.586235 GGGCCGGATGACCATGGG 62.586 72.222 18.09 0.00 35.59 4.00
2705 3819 4.586235 GGCCGGATGACCATGGGG 62.586 72.222 18.09 7.43 41.29 4.96
2706 3820 4.586235 GCCGGATGACCATGGGGG 62.586 72.222 18.09 8.15 44.81 5.40
2707 3821 2.772191 CCGGATGACCATGGGGGA 60.772 66.667 18.09 0.00 41.15 4.81
2708 3822 2.382770 CCGGATGACCATGGGGGAA 61.383 63.158 18.09 0.00 41.15 3.97
2709 3823 1.149174 CGGATGACCATGGGGGAAG 59.851 63.158 18.09 0.00 41.15 3.46
2710 3824 1.344953 CGGATGACCATGGGGGAAGA 61.345 60.000 18.09 0.00 41.15 2.87
2711 3825 1.152649 GGATGACCATGGGGGAAGAT 58.847 55.000 18.09 0.00 41.15 2.40
2712 3826 1.202976 GGATGACCATGGGGGAAGATG 60.203 57.143 18.09 0.00 41.15 2.90
2713 3827 1.776667 GATGACCATGGGGGAAGATGA 59.223 52.381 18.09 0.00 41.15 2.92
2714 3828 1.911454 TGACCATGGGGGAAGATGAT 58.089 50.000 18.09 0.00 41.15 2.45
2715 3829 1.496001 TGACCATGGGGGAAGATGATG 59.504 52.381 18.09 0.00 41.15 3.07
2716 3830 1.496429 GACCATGGGGGAAGATGATGT 59.504 52.381 18.09 0.00 41.15 3.06
2717 3831 1.932338 ACCATGGGGGAAGATGATGTT 59.068 47.619 18.09 0.00 41.15 2.71
2718 3832 2.313317 CCATGGGGGAAGATGATGTTG 58.687 52.381 2.85 0.00 40.01 3.33
2719 3833 2.313317 CATGGGGGAAGATGATGTTGG 58.687 52.381 0.00 0.00 0.00 3.77
2720 3834 0.630673 TGGGGGAAGATGATGTTGGG 59.369 55.000 0.00 0.00 0.00 4.12
2721 3835 0.106015 GGGGGAAGATGATGTTGGGG 60.106 60.000 0.00 0.00 0.00 4.96
2722 3836 0.631212 GGGGAAGATGATGTTGGGGT 59.369 55.000 0.00 0.00 0.00 4.95
2723 3837 1.007118 GGGGAAGATGATGTTGGGGTT 59.993 52.381 0.00 0.00 0.00 4.11
2724 3838 2.102578 GGGAAGATGATGTTGGGGTTG 58.897 52.381 0.00 0.00 0.00 3.77
2725 3839 2.291540 GGGAAGATGATGTTGGGGTTGA 60.292 50.000 0.00 0.00 0.00 3.18
2726 3840 3.430453 GGAAGATGATGTTGGGGTTGAA 58.570 45.455 0.00 0.00 0.00 2.69
2727 3841 3.193479 GGAAGATGATGTTGGGGTTGAAC 59.807 47.826 0.00 0.00 0.00 3.18
2728 3842 2.807676 AGATGATGTTGGGGTTGAACC 58.192 47.619 5.62 5.62 37.60 3.62
2784 3898 4.603535 GTGCAGCCCCAGGGTTGT 62.604 66.667 19.40 0.00 46.30 3.32
2785 3899 4.601794 TGCAGCCCCAGGGTTGTG 62.602 66.667 19.40 9.01 46.30 3.33
2792 3906 4.308458 CCAGGGTTGTGGCGACGA 62.308 66.667 0.00 0.00 0.00 4.20
2793 3907 2.047274 CAGGGTTGTGGCGACGAT 60.047 61.111 0.00 0.00 0.00 3.73
2794 3908 2.047274 AGGGTTGTGGCGACGATG 60.047 61.111 0.00 0.00 0.00 3.84
2795 3909 2.047655 GGGTTGTGGCGACGATGA 60.048 61.111 0.00 0.00 0.00 2.92
2796 3910 2.100631 GGGTTGTGGCGACGATGAG 61.101 63.158 0.00 0.00 0.00 2.90
2797 3911 1.080093 GGTTGTGGCGACGATGAGA 60.080 57.895 0.00 0.00 0.00 3.27
2798 3912 0.669318 GGTTGTGGCGACGATGAGAA 60.669 55.000 0.00 0.00 0.00 2.87
2799 3913 0.716108 GTTGTGGCGACGATGAGAAG 59.284 55.000 0.00 0.00 0.00 2.85
2800 3914 1.014044 TTGTGGCGACGATGAGAAGC 61.014 55.000 0.00 0.00 0.00 3.86
2801 3915 2.167861 GTGGCGACGATGAGAAGCC 61.168 63.158 0.00 0.00 42.75 4.35
2802 3916 2.956964 GGCGACGATGAGAAGCCG 60.957 66.667 0.00 0.00 36.59 5.52
2803 3917 2.956964 GCGACGATGAGAAGCCGG 60.957 66.667 0.00 0.00 0.00 6.13
2804 3918 2.956964 CGACGATGAGAAGCCGGC 60.957 66.667 21.89 21.89 0.00 6.13
2805 3919 2.586357 GACGATGAGAAGCCGGCC 60.586 66.667 26.15 9.10 0.00 6.13
2806 3920 4.514577 ACGATGAGAAGCCGGCCG 62.515 66.667 26.15 21.04 0.00 6.13
2823 3937 3.400007 GGAGATCCGACGCTTTGC 58.600 61.111 0.00 0.00 0.00 3.68
2824 3938 1.153549 GGAGATCCGACGCTTTGCT 60.154 57.895 0.00 0.00 0.00 3.91
2825 3939 1.424493 GGAGATCCGACGCTTTGCTG 61.424 60.000 0.00 0.00 0.00 4.41
2826 3940 1.424493 GAGATCCGACGCTTTGCTGG 61.424 60.000 0.00 0.00 0.00 4.85
2827 3941 3.100862 GATCCGACGCTTTGCTGGC 62.101 63.158 0.00 0.00 0.00 4.85
2828 3942 3.612247 ATCCGACGCTTTGCTGGCT 62.612 57.895 0.00 0.00 0.00 4.75
2829 3943 3.357079 CCGACGCTTTGCTGGCTT 61.357 61.111 0.00 0.00 0.00 4.35
2830 3944 2.174349 CGACGCTTTGCTGGCTTC 59.826 61.111 0.00 0.00 0.00 3.86
2831 3945 2.606961 CGACGCTTTGCTGGCTTCA 61.607 57.895 0.00 0.00 0.00 3.02
2832 3946 1.208614 GACGCTTTGCTGGCTTCAG 59.791 57.895 0.00 0.00 41.30 3.02
2833 3947 2.192608 GACGCTTTGCTGGCTTCAGG 62.193 60.000 0.00 0.00 38.87 3.86
2834 3948 1.968017 CGCTTTGCTGGCTTCAGGA 60.968 57.895 0.00 0.00 38.87 3.86
2835 3949 1.583477 GCTTTGCTGGCTTCAGGAC 59.417 57.895 0.00 0.00 38.58 3.85
2836 3950 1.871772 CTTTGCTGGCTTCAGGACG 59.128 57.895 0.00 0.00 38.58 4.79
2837 3951 2.192608 CTTTGCTGGCTTCAGGACGC 62.193 60.000 0.00 0.00 38.58 5.19
2840 3954 2.571757 CTGGCTTCAGGACGCGTA 59.428 61.111 13.97 0.00 34.96 4.42
2841 3955 1.805945 CTGGCTTCAGGACGCGTAC 60.806 63.158 15.35 15.35 34.96 3.67
2843 3957 2.879462 GCTTCAGGACGCGTACGG 60.879 66.667 17.32 16.67 46.04 4.02
2844 3958 2.202570 CTTCAGGACGCGTACGGG 60.203 66.667 28.27 28.27 46.04 5.28
2845 3959 4.424566 TTCAGGACGCGTACGGGC 62.425 66.667 29.56 21.49 46.04 6.13
2870 3984 2.281761 GCCGGGCGGATTCATCAT 60.282 61.111 1.81 0.00 37.50 2.45
2871 3985 2.328099 GCCGGGCGGATTCATCATC 61.328 63.158 1.81 0.00 37.50 2.92
2877 3991 3.972227 GGATTCATCATCCCCGCG 58.028 61.111 0.00 0.00 45.71 6.46
2878 3992 2.328099 GGATTCATCATCCCCGCGC 61.328 63.158 0.00 0.00 45.71 6.86
2879 3993 2.666190 ATTCATCATCCCCGCGCG 60.666 61.111 25.67 25.67 0.00 6.86
2880 3994 3.163832 ATTCATCATCCCCGCGCGA 62.164 57.895 34.63 12.79 0.00 5.87
2881 3995 3.790334 TTCATCATCCCCGCGCGAG 62.790 63.158 34.63 20.45 0.00 5.03
2945 4059 3.330720 CCTGTCCCGGGCCTTCTT 61.331 66.667 18.49 0.00 0.00 2.52
2946 4060 2.045926 CTGTCCCGGGCCTTCTTG 60.046 66.667 18.49 0.00 0.00 3.02
2947 4061 3.628646 CTGTCCCGGGCCTTCTTGG 62.629 68.421 18.49 0.00 39.35 3.61
2964 4078 4.700365 GCGTTTGCCCTGTTCCGC 62.700 66.667 0.00 0.00 33.98 5.54
2965 4079 4.038080 CGTTTGCCCTGTTCCGCC 62.038 66.667 0.00 0.00 0.00 6.13
2966 4080 4.038080 GTTTGCCCTGTTCCGCCG 62.038 66.667 0.00 0.00 0.00 6.46
2988 4102 3.311110 GTGGTGACAGCCTCCCGA 61.311 66.667 1.47 0.00 44.46 5.14
2989 4103 3.311110 TGGTGACAGCCTCCCGAC 61.311 66.667 1.47 0.00 35.01 4.79
2990 4104 4.436998 GGTGACAGCCTCCCGACG 62.437 72.222 0.00 0.00 0.00 5.12
2996 4110 4.070552 AGCCTCCCGACGCTGAAC 62.071 66.667 0.00 0.00 32.98 3.18
2997 4111 4.070552 GCCTCCCGACGCTGAACT 62.071 66.667 0.00 0.00 0.00 3.01
2998 4112 2.657237 CCTCCCGACGCTGAACTT 59.343 61.111 0.00 0.00 0.00 2.66
2999 4113 1.004918 CCTCCCGACGCTGAACTTT 60.005 57.895 0.00 0.00 0.00 2.66
3000 4114 1.014564 CCTCCCGACGCTGAACTTTC 61.015 60.000 0.00 0.00 0.00 2.62
3001 4115 1.344942 CTCCCGACGCTGAACTTTCG 61.345 60.000 0.00 0.00 0.00 3.46
3002 4116 2.470286 CCGACGCTGAACTTTCGC 59.530 61.111 0.00 0.00 0.00 4.70
3003 4117 2.470286 CGACGCTGAACTTTCGCC 59.530 61.111 0.00 0.00 0.00 5.54
3004 4118 2.022129 CGACGCTGAACTTTCGCCT 61.022 57.895 0.00 0.00 0.00 5.52
3005 4119 1.557443 CGACGCTGAACTTTCGCCTT 61.557 55.000 0.00 0.00 0.00 4.35
3006 4120 0.164002 GACGCTGAACTTTCGCCTTC 59.836 55.000 0.00 0.00 0.00 3.46
3007 4121 1.228657 ACGCTGAACTTTCGCCTTCC 61.229 55.000 0.00 0.00 0.00 3.46
3008 4122 1.227999 CGCTGAACTTTCGCCTTCCA 61.228 55.000 0.00 0.00 0.00 3.53
3009 4123 0.519077 GCTGAACTTTCGCCTTCCAG 59.481 55.000 0.00 0.00 0.00 3.86
3010 4124 1.884235 CTGAACTTTCGCCTTCCAGT 58.116 50.000 0.00 0.00 0.00 4.00
3011 4125 1.801178 CTGAACTTTCGCCTTCCAGTC 59.199 52.381 0.00 0.00 0.00 3.51
3012 4126 0.790814 GAACTTTCGCCTTCCAGTCG 59.209 55.000 0.00 0.00 0.00 4.18
3013 4127 0.602905 AACTTTCGCCTTCCAGTCGG 60.603 55.000 0.00 0.00 0.00 4.79
3014 4128 2.358247 TTTCGCCTTCCAGTCGGC 60.358 61.111 0.00 0.00 42.86 5.54
3018 4132 2.263540 GCCTTCCAGTCGGCGTTA 59.736 61.111 6.85 0.00 36.45 3.18
3019 4133 1.810030 GCCTTCCAGTCGGCGTTAG 60.810 63.158 6.85 0.00 36.45 2.34
3020 4134 1.888018 CCTTCCAGTCGGCGTTAGA 59.112 57.895 6.85 0.00 0.00 2.10
3021 4135 0.458025 CCTTCCAGTCGGCGTTAGAC 60.458 60.000 6.85 0.00 38.81 2.59
3022 4136 0.242825 CTTCCAGTCGGCGTTAGACA 59.757 55.000 6.85 0.00 40.84 3.41
3023 4137 0.892755 TTCCAGTCGGCGTTAGACAT 59.107 50.000 6.85 0.00 40.84 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.880157 AGCAGCACAAAGATTAAATAAATGAAT 57.120 25.926 0.00 0.00 0.00 2.57
14 15 9.357652 GAGCAGCACAAAGATTAAATAAATGAA 57.642 29.630 0.00 0.00 0.00 2.57
15 16 8.522003 TGAGCAGCACAAAGATTAAATAAATGA 58.478 29.630 0.00 0.00 0.00 2.57
16 17 8.692110 TGAGCAGCACAAAGATTAAATAAATG 57.308 30.769 0.00 0.00 0.00 2.32
17 18 8.922058 CTGAGCAGCACAAAGATTAAATAAAT 57.078 30.769 0.00 0.00 0.00 1.40
91 92 4.882427 TCCATTAACACGTTCCAGTCAAAA 59.118 37.500 0.00 0.00 0.00 2.44
93 94 4.074627 TCCATTAACACGTTCCAGTCAA 57.925 40.909 0.00 0.00 0.00 3.18
119 120 4.515191 GCCATCGAGCCATTAACAAGAATA 59.485 41.667 0.00 0.00 0.00 1.75
120 121 3.316308 GCCATCGAGCCATTAACAAGAAT 59.684 43.478 0.00 0.00 0.00 2.40
121 122 2.682856 GCCATCGAGCCATTAACAAGAA 59.317 45.455 0.00 0.00 0.00 2.52
167 168 2.289010 CCTGGCAATTTCCACAAAGTCC 60.289 50.000 0.00 0.00 31.74 3.85
295 307 6.496338 AATCCAAGACAACTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
296 308 6.488683 ACAAATCCAAGACAACTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
297 309 6.001460 ACAAATCCAAGACAACTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
298 310 6.149474 AGACAAATCCAAGACAACTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
299 311 7.133891 AGACAAATCCAAGACAACTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
300 312 9.436957 TCTAGACAAATCCAAGACAACTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
301 313 9.965902 ATCTAGACAAATCCAAGACAACTAATT 57.034 29.630 0.00 0.00 0.00 1.40
303 315 9.871238 GTATCTAGACAAATCCAAGACAACTAA 57.129 33.333 0.00 0.00 0.00 2.24
304 316 8.188799 CGTATCTAGACAAATCCAAGACAACTA 58.811 37.037 0.00 0.00 0.00 2.24
305 317 7.036220 CGTATCTAGACAAATCCAAGACAACT 58.964 38.462 0.00 0.00 0.00 3.16
306 318 6.255887 CCGTATCTAGACAAATCCAAGACAAC 59.744 42.308 0.00 0.00 0.00 3.32
307 319 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
308 320 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
309 321 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
310 322 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
311 323 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
312 324 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
313 325 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
327 339 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
328 340 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
329 341 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
330 342 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
333 345 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
337 349 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
338 350 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
339 351 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
340 352 7.014808 GGAGGTATCTAGCACTAAAATGAGTCT 59.985 40.741 0.00 0.00 0.00 3.24
341 353 7.149307 GGAGGTATCTAGCACTAAAATGAGTC 58.851 42.308 0.00 0.00 0.00 3.36
342 354 6.239064 CGGAGGTATCTAGCACTAAAATGAGT 60.239 42.308 0.00 0.00 0.00 3.41
343 355 6.153067 CGGAGGTATCTAGCACTAAAATGAG 58.847 44.000 0.00 0.00 0.00 2.90
344 356 5.597182 ACGGAGGTATCTAGCACTAAAATGA 59.403 40.000 0.00 0.00 0.00 2.57
345 357 5.844004 ACGGAGGTATCTAGCACTAAAATG 58.156 41.667 0.00 0.00 0.00 2.32
346 358 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
359 371 9.233649 CTTAGATTTGTCTAGATACGGAGGTAT 57.766 37.037 0.00 0.00 42.01 2.73
360 372 8.435187 TCTTAGATTTGTCTAGATACGGAGGTA 58.565 37.037 0.00 0.00 0.00 3.08
361 373 7.229106 GTCTTAGATTTGTCTAGATACGGAGGT 59.771 40.741 0.00 0.00 0.00 3.85
362 374 7.228906 TGTCTTAGATTTGTCTAGATACGGAGG 59.771 40.741 0.00 0.00 0.00 4.30
363 375 8.155821 TGTCTTAGATTTGTCTAGATACGGAG 57.844 38.462 0.00 0.00 0.00 4.63
364 376 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
365 377 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
376 388 9.746711 CGTTCTGAATTACTTGTCTTAGATTTG 57.253 33.333 0.00 0.00 0.00 2.32
377 389 8.936864 CCGTTCTGAATTACTTGTCTTAGATTT 58.063 33.333 0.00 0.00 0.00 2.17
378 390 8.311836 TCCGTTCTGAATTACTTGTCTTAGATT 58.688 33.333 0.00 0.00 0.00 2.40
379 391 7.837863 TCCGTTCTGAATTACTTGTCTTAGAT 58.162 34.615 0.00 0.00 0.00 1.98
380 392 7.223260 TCCGTTCTGAATTACTTGTCTTAGA 57.777 36.000 0.00 0.00 0.00 2.10
381 393 6.531948 CCTCCGTTCTGAATTACTTGTCTTAG 59.468 42.308 0.00 0.00 0.00 2.18
382 394 6.395629 CCTCCGTTCTGAATTACTTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
383 395 5.238583 CCTCCGTTCTGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
384 396 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
385 397 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
386 398 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
387 399 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
388 400 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
389 401 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
390 402 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
391 403 3.703052 GGTACTCCCTCCGTTCTGAATTA 59.297 47.826 0.00 0.00 0.00 1.40
392 404 2.500504 GGTACTCCCTCCGTTCTGAATT 59.499 50.000 0.00 0.00 0.00 2.17
393 405 2.108970 GGTACTCCCTCCGTTCTGAAT 58.891 52.381 0.00 0.00 0.00 2.57
394 406 1.203087 TGGTACTCCCTCCGTTCTGAA 60.203 52.381 0.00 0.00 0.00 3.02
395 407 0.406750 TGGTACTCCCTCCGTTCTGA 59.593 55.000 0.00 0.00 0.00 3.27
396 408 0.818296 CTGGTACTCCCTCCGTTCTG 59.182 60.000 0.00 0.00 0.00 3.02
397 409 0.971447 GCTGGTACTCCCTCCGTTCT 60.971 60.000 0.00 0.00 0.00 3.01
398 410 1.255667 TGCTGGTACTCCCTCCGTTC 61.256 60.000 0.00 0.00 0.00 3.95
399 411 0.834687 TTGCTGGTACTCCCTCCGTT 60.835 55.000 0.00 0.00 0.00 4.44
400 412 1.229082 TTGCTGGTACTCCCTCCGT 60.229 57.895 0.00 0.00 0.00 4.69
401 413 1.517832 CTTGCTGGTACTCCCTCCG 59.482 63.158 0.00 0.00 0.00 4.63
402 414 1.222113 GCTTGCTGGTACTCCCTCC 59.778 63.158 0.00 0.00 0.00 4.30
403 415 0.107945 CTGCTTGCTGGTACTCCCTC 60.108 60.000 0.00 0.00 0.00 4.30
404 416 1.986413 CTGCTTGCTGGTACTCCCT 59.014 57.895 0.00 0.00 0.00 4.20
405 417 1.746991 GCTGCTTGCTGGTACTCCC 60.747 63.158 0.00 0.00 38.95 4.30
406 418 3.896479 GCTGCTTGCTGGTACTCC 58.104 61.111 0.00 0.00 38.95 3.85
432 444 4.539083 TCGTGTGCCCACTTGCGT 62.539 61.111 0.00 0.00 39.55 5.24
521 533 3.617263 GCCGTTAAGTAGATTGTCACTGG 59.383 47.826 0.00 0.00 0.00 4.00
523 535 4.803098 AGCCGTTAAGTAGATTGTCACT 57.197 40.909 0.00 0.00 0.00 3.41
524 536 5.648572 ACTAGCCGTTAAGTAGATTGTCAC 58.351 41.667 0.00 0.00 0.00 3.67
529 541 6.694447 TCAACAACTAGCCGTTAAGTAGATT 58.306 36.000 0.00 0.00 33.63 2.40
623 635 8.555166 TCTTCTTGCTGTTGTTTTATTTTACG 57.445 30.769 0.00 0.00 0.00 3.18
640 652 6.237915 CGGCCAAATGATAATTTTCTTCTTGC 60.238 38.462 2.24 0.00 0.00 4.01
704 725 8.530804 ACCAATTACTTCTACTCGTATTACCT 57.469 34.615 0.00 0.00 0.00 3.08
706 727 9.392021 GCTACCAATTACTTCTACTCGTATTAC 57.608 37.037 0.00 0.00 0.00 1.89
707 728 9.123902 TGCTACCAATTACTTCTACTCGTATTA 57.876 33.333 0.00 0.00 0.00 0.98
708 729 8.004087 TGCTACCAATTACTTCTACTCGTATT 57.996 34.615 0.00 0.00 0.00 1.89
709 730 7.578310 TGCTACCAATTACTTCTACTCGTAT 57.422 36.000 0.00 0.00 0.00 3.06
710 731 7.578310 ATGCTACCAATTACTTCTACTCGTA 57.422 36.000 0.00 0.00 0.00 3.43
711 732 5.909621 TGCTACCAATTACTTCTACTCGT 57.090 39.130 0.00 0.00 0.00 4.18
712 733 7.254455 CCAAATGCTACCAATTACTTCTACTCG 60.254 40.741 0.00 0.00 0.00 4.18
713 734 7.769044 TCCAAATGCTACCAATTACTTCTACTC 59.231 37.037 0.00 0.00 0.00 2.59
714 735 7.553044 GTCCAAATGCTACCAATTACTTCTACT 59.447 37.037 0.00 0.00 0.00 2.57
715 736 7.465513 CGTCCAAATGCTACCAATTACTTCTAC 60.466 40.741 0.00 0.00 0.00 2.59
716 737 6.537301 CGTCCAAATGCTACCAATTACTTCTA 59.463 38.462 0.00 0.00 0.00 2.10
717 738 5.354234 CGTCCAAATGCTACCAATTACTTCT 59.646 40.000 0.00 0.00 0.00 2.85
718 739 5.448632 CCGTCCAAATGCTACCAATTACTTC 60.449 44.000 0.00 0.00 0.00 3.01
719 740 4.398044 CCGTCCAAATGCTACCAATTACTT 59.602 41.667 0.00 0.00 0.00 2.24
720 741 3.945285 CCGTCCAAATGCTACCAATTACT 59.055 43.478 0.00 0.00 0.00 2.24
721 742 3.692593 ACCGTCCAAATGCTACCAATTAC 59.307 43.478 0.00 0.00 0.00 1.89
722 743 3.942748 GACCGTCCAAATGCTACCAATTA 59.057 43.478 0.00 0.00 0.00 1.40
723 744 2.752903 GACCGTCCAAATGCTACCAATT 59.247 45.455 0.00 0.00 0.00 2.32
724 745 2.365582 GACCGTCCAAATGCTACCAAT 58.634 47.619 0.00 0.00 0.00 3.16
725 746 1.816074 GACCGTCCAAATGCTACCAA 58.184 50.000 0.00 0.00 0.00 3.67
726 747 0.390603 CGACCGTCCAAATGCTACCA 60.391 55.000 0.00 0.00 0.00 3.25
727 748 1.702491 GCGACCGTCCAAATGCTACC 61.702 60.000 0.00 0.00 0.00 3.18
728 749 0.739813 AGCGACCGTCCAAATGCTAC 60.740 55.000 0.00 0.00 0.00 3.58
729 750 0.739462 CAGCGACCGTCCAAATGCTA 60.739 55.000 0.00 0.00 0.00 3.49
730 751 2.034879 CAGCGACCGTCCAAATGCT 61.035 57.895 0.00 0.00 0.00 3.79
749 770 7.592903 GGTAACGCTATAGTAGACATAACCAAC 59.407 40.741 0.84 0.00 0.00 3.77
846 869 6.253946 AGGATCTCCCGAATTAACAAATCT 57.746 37.500 0.00 0.00 40.87 2.40
860 883 4.843728 TGATGTTGTTGTTAGGATCTCCC 58.156 43.478 0.00 0.00 36.42 4.30
959 984 4.672024 CGCGCGACTATAAATAGTGGATCT 60.672 45.833 28.94 0.00 43.27 2.75
960 985 3.542704 CGCGCGACTATAAATAGTGGATC 59.457 47.826 28.94 5.59 43.27 3.36
1005 1031 1.376553 GAGCACCAGACAAGGCTCC 60.377 63.158 0.00 0.00 45.31 4.70
1021 1047 4.714632 CTCTAGTCCTCTCTACAAGGGAG 58.285 52.174 0.00 0.00 34.46 4.30
1022 1048 3.117813 GCTCTAGTCCTCTCTACAAGGGA 60.118 52.174 0.00 0.00 34.46 4.20
1023 1049 3.219281 GCTCTAGTCCTCTCTACAAGGG 58.781 54.545 0.00 0.00 34.46 3.95
1024 1050 3.219281 GGCTCTAGTCCTCTCTACAAGG 58.781 54.545 0.00 0.00 35.05 3.61
1099 1125 0.103026 TGATGGCAGTCGAATCGGAG 59.897 55.000 1.76 0.00 0.00 4.63
1129 1155 1.004277 GCTCACTCTTGGACACGTCG 61.004 60.000 0.00 0.00 0.00 5.12
1174 1200 2.032681 GCAGGAGAAGTGGCGGTT 59.967 61.111 0.00 0.00 0.00 4.44
1183 1209 2.964310 GCCAGGAGCAGCAGGAGAA 61.964 63.158 0.00 0.00 42.97 2.87
1550 1591 3.285371 GGCGACGGAGGAAGAAGA 58.715 61.111 0.00 0.00 0.00 2.87
1573 1614 1.863662 ATGTCGTCGGCGTCTCTGTT 61.864 55.000 10.18 0.00 39.49 3.16
1576 1617 2.792599 GATGTCGTCGGCGTCTCT 59.207 61.111 10.18 0.00 39.49 3.10
1635 1676 2.642425 AACAGAGCGTTCTCCTCGA 58.358 52.632 0.00 0.00 40.22 4.04
1845 1886 1.608696 TGCTAGTGCATGCCCATGA 59.391 52.632 16.68 0.00 45.31 3.07
1856 1897 9.643693 AGTAATTGGAAAAATGAAATGCTAGTG 57.356 29.630 0.00 0.00 0.00 2.74
1863 1906 7.297391 GCGCAAAGTAATTGGAAAAATGAAAT 58.703 30.769 0.30 0.00 39.54 2.17
1889 1932 0.317436 TGGCATGACGCGAAACAAAC 60.317 50.000 15.93 6.47 43.84 2.93
1894 1937 3.430862 GCCTGGCATGACGCGAAA 61.431 61.111 15.93 0.00 43.84 3.46
1986 2029 4.487714 TGAGGGGTCTGTATTTCACATC 57.512 45.455 0.00 0.00 36.29 3.06
2058 2101 7.400339 AGCTATTGGCACACTATATAGTGGTAT 59.600 37.037 35.01 24.08 46.76 2.73
2059 2102 6.724441 AGCTATTGGCACACTATATAGTGGTA 59.276 38.462 35.01 20.64 46.76 3.25
2060 2103 5.544176 AGCTATTGGCACACTATATAGTGGT 59.456 40.000 35.01 22.68 46.76 4.16
2061 2104 6.042638 AGCTATTGGCACACTATATAGTGG 57.957 41.667 35.01 26.71 46.76 4.00
2063 2106 7.303182 TGAAGCTATTGGCACACTATATAGT 57.697 36.000 9.71 9.71 44.79 2.12
2064 2107 8.607441 TTTGAAGCTATTGGCACACTATATAG 57.393 34.615 8.27 8.27 44.79 1.31
2066 2109 9.745018 ATATTTGAAGCTATTGGCACACTATAT 57.255 29.630 0.00 0.00 44.79 0.86
2067 2110 9.573166 AATATTTGAAGCTATTGGCACACTATA 57.427 29.630 0.00 0.00 44.79 1.31
2068 2111 8.469309 AATATTTGAAGCTATTGGCACACTAT 57.531 30.769 0.00 0.00 44.79 2.12
2069 2112 7.880160 AATATTTGAAGCTATTGGCACACTA 57.120 32.000 0.00 0.00 44.79 2.74
2070 2113 6.780457 AATATTTGAAGCTATTGGCACACT 57.220 33.333 0.00 0.00 44.79 3.55
2071 2114 7.930217 TCTAATATTTGAAGCTATTGGCACAC 58.070 34.615 0.00 0.00 44.79 3.82
2072 2115 7.255242 GCTCTAATATTTGAAGCTATTGGCACA 60.255 37.037 0.00 0.00 44.79 4.57
2073 2116 7.080724 GCTCTAATATTTGAAGCTATTGGCAC 58.919 38.462 0.00 0.00 44.79 5.01
2074 2117 6.772233 TGCTCTAATATTTGAAGCTATTGGCA 59.228 34.615 15.98 10.37 44.79 4.92
2075 2118 7.206981 TGCTCTAATATTTGAAGCTATTGGC 57.793 36.000 15.98 8.61 42.19 4.52
2076 2119 9.228949 AGATGCTCTAATATTTGAAGCTATTGG 57.771 33.333 15.98 0.00 0.00 3.16
2078 2121 9.447157 GGAGATGCTCTAATATTTGAAGCTATT 57.553 33.333 15.98 0.00 0.00 1.73
2079 2122 8.600668 TGGAGATGCTCTAATATTTGAAGCTAT 58.399 33.333 15.98 10.87 0.00 2.97
2080 2123 7.875041 GTGGAGATGCTCTAATATTTGAAGCTA 59.125 37.037 15.98 8.19 0.00 3.32
2081 2124 6.709846 GTGGAGATGCTCTAATATTTGAAGCT 59.290 38.462 15.98 6.17 0.00 3.74
2082 2125 6.709846 AGTGGAGATGCTCTAATATTTGAAGC 59.290 38.462 0.00 4.17 0.00 3.86
2083 2126 7.116090 CGAGTGGAGATGCTCTAATATTTGAAG 59.884 40.741 0.00 0.00 0.00 3.02
2084 2127 6.925718 CGAGTGGAGATGCTCTAATATTTGAA 59.074 38.462 0.00 0.00 0.00 2.69
2085 2128 6.040955 ACGAGTGGAGATGCTCTAATATTTGA 59.959 38.462 0.00 0.00 0.00 2.69
2086 2129 6.219473 ACGAGTGGAGATGCTCTAATATTTG 58.781 40.000 0.00 0.00 0.00 2.32
2087 2130 6.412362 ACGAGTGGAGATGCTCTAATATTT 57.588 37.500 0.00 0.00 0.00 1.40
2088 2131 6.412362 AACGAGTGGAGATGCTCTAATATT 57.588 37.500 0.00 0.00 0.00 1.28
2089 2132 5.047660 GGAACGAGTGGAGATGCTCTAATAT 60.048 44.000 0.00 0.00 0.00 1.28
2090 2133 4.278669 GGAACGAGTGGAGATGCTCTAATA 59.721 45.833 0.00 0.00 0.00 0.98
2091 2134 3.068873 GGAACGAGTGGAGATGCTCTAAT 59.931 47.826 0.00 0.00 0.00 1.73
2148 2200 1.633945 AGGGTCTAAAAATCGCTGGGT 59.366 47.619 0.00 0.00 0.00 4.51
2152 2204 1.064685 CCCCAGGGTCTAAAAATCGCT 60.065 52.381 4.22 0.00 0.00 4.93
2164 2216 2.122813 CTAGATCGCCCCCAGGGT 60.123 66.667 4.22 0.00 46.51 4.34
2261 2316 2.180769 CGTTGATCGCCGGACTCA 59.819 61.111 5.05 0.33 0.00 3.41
2276 2331 4.373116 ATCGCCGAACTGTGCCGT 62.373 61.111 0.00 0.00 0.00 5.68
2279 2334 1.132640 GTTGATCGCCGAACTGTGC 59.867 57.895 0.00 0.00 0.00 4.57
2310 2387 4.412207 GCCGAACTTTTCATTTTATCGCT 58.588 39.130 0.00 0.00 0.00 4.93
2316 2393 2.124122 GCACGCCGAACTTTTCATTTT 58.876 42.857 0.00 0.00 0.00 1.82
2342 2419 3.508744 CATTGCCTATGCGTCCTTTTT 57.491 42.857 0.00 0.00 41.78 1.94
2353 2430 1.067516 GGCGTTTGATGCATTGCCTAT 59.932 47.619 15.99 0.00 39.38 2.57
2418 2528 1.469251 GCAATACAGAAGTCGCTCCGA 60.469 52.381 0.00 0.00 0.00 4.55
2421 2531 1.929836 CCAGCAATACAGAAGTCGCTC 59.070 52.381 0.00 0.00 0.00 5.03
2426 2536 0.324943 ACGCCCAGCAATACAGAAGT 59.675 50.000 0.00 0.00 0.00 3.01
2432 2542 1.017177 TTCACGACGCCCAGCAATAC 61.017 55.000 0.00 0.00 0.00 1.89
2434 2544 2.031919 TTCACGACGCCCAGCAAT 59.968 55.556 0.00 0.00 0.00 3.56
2450 2589 2.109799 CCCGAGCGATGATGCCTT 59.890 61.111 0.00 0.00 34.65 4.35
2496 2635 4.728102 CGACGGTGCCGCCAACTA 62.728 66.667 10.87 0.00 44.19 2.24
2593 3707 0.739112 CTTCTCACAAGCCTCCTCGC 60.739 60.000 0.00 0.00 0.00 5.03
2640 3754 2.128507 CCTACTCAGCCTCCCCGAC 61.129 68.421 0.00 0.00 0.00 4.79
2684 3798 4.195334 ATGGTCATCCGGCCCAGC 62.195 66.667 0.00 0.00 36.30 4.85
2685 3799 2.203252 CATGGTCATCCGGCCCAG 60.203 66.667 0.00 0.00 36.30 4.45
2686 3800 3.807839 CCATGGTCATCCGGCCCA 61.808 66.667 2.57 0.00 36.30 5.36
2687 3801 4.586235 CCCATGGTCATCCGGCCC 62.586 72.222 11.73 0.00 36.30 5.80
2688 3802 4.586235 CCCCATGGTCATCCGGCC 62.586 72.222 11.73 0.00 36.30 6.13
2689 3803 4.586235 CCCCCATGGTCATCCGGC 62.586 72.222 11.73 0.00 36.30 6.13
2690 3804 2.343475 CTTCCCCCATGGTCATCCGG 62.343 65.000 11.73 3.02 36.30 5.14
2691 3805 1.149174 CTTCCCCCATGGTCATCCG 59.851 63.158 11.73 0.00 36.30 4.18
2692 3806 1.152649 ATCTTCCCCCATGGTCATCC 58.847 55.000 11.73 0.00 34.77 3.51
2693 3807 1.776667 TCATCTTCCCCCATGGTCATC 59.223 52.381 11.73 0.00 34.77 2.92
2694 3808 1.911454 TCATCTTCCCCCATGGTCAT 58.089 50.000 11.73 0.00 34.77 3.06
2695 3809 1.496001 CATCATCTTCCCCCATGGTCA 59.504 52.381 11.73 0.00 34.77 4.02
2696 3810 1.496429 ACATCATCTTCCCCCATGGTC 59.504 52.381 11.73 0.00 34.77 4.02
2697 3811 1.612035 ACATCATCTTCCCCCATGGT 58.388 50.000 11.73 0.00 34.77 3.55
2698 3812 2.313317 CAACATCATCTTCCCCCATGG 58.687 52.381 4.14 4.14 0.00 3.66
2699 3813 2.313317 CCAACATCATCTTCCCCCATG 58.687 52.381 0.00 0.00 0.00 3.66
2700 3814 1.218704 CCCAACATCATCTTCCCCCAT 59.781 52.381 0.00 0.00 0.00 4.00
2701 3815 0.630673 CCCAACATCATCTTCCCCCA 59.369 55.000 0.00 0.00 0.00 4.96
2702 3816 0.106015 CCCCAACATCATCTTCCCCC 60.106 60.000 0.00 0.00 0.00 5.40
2703 3817 0.631212 ACCCCAACATCATCTTCCCC 59.369 55.000 0.00 0.00 0.00 4.81
2704 3818 2.102578 CAACCCCAACATCATCTTCCC 58.897 52.381 0.00 0.00 0.00 3.97
2705 3819 3.085952 TCAACCCCAACATCATCTTCC 57.914 47.619 0.00 0.00 0.00 3.46
2706 3820 3.193479 GGTTCAACCCCAACATCATCTTC 59.807 47.826 0.00 0.00 30.04 2.87
2707 3821 3.165071 GGTTCAACCCCAACATCATCTT 58.835 45.455 0.00 0.00 30.04 2.40
2708 3822 2.807676 GGTTCAACCCCAACATCATCT 58.192 47.619 0.00 0.00 30.04 2.90
2767 3881 4.603535 ACAACCCTGGGGCTGCAC 62.604 66.667 18.88 0.00 39.32 4.57
2768 3882 4.601794 CACAACCCTGGGGCTGCA 62.602 66.667 18.88 0.00 39.32 4.41
2775 3889 3.605749 ATCGTCGCCACAACCCTGG 62.606 63.158 0.00 0.00 0.00 4.45
2776 3890 2.047274 ATCGTCGCCACAACCCTG 60.047 61.111 0.00 0.00 0.00 4.45
2777 3891 2.047274 CATCGTCGCCACAACCCT 60.047 61.111 0.00 0.00 0.00 4.34
2778 3892 2.047655 TCATCGTCGCCACAACCC 60.048 61.111 0.00 0.00 0.00 4.11
2779 3893 0.669318 TTCTCATCGTCGCCACAACC 60.669 55.000 0.00 0.00 0.00 3.77
2780 3894 0.716108 CTTCTCATCGTCGCCACAAC 59.284 55.000 0.00 0.00 0.00 3.32
2781 3895 1.014044 GCTTCTCATCGTCGCCACAA 61.014 55.000 0.00 0.00 0.00 3.33
2782 3896 1.446099 GCTTCTCATCGTCGCCACA 60.446 57.895 0.00 0.00 0.00 4.17
2783 3897 2.167861 GGCTTCTCATCGTCGCCAC 61.168 63.158 0.00 0.00 40.41 5.01
2784 3898 2.184322 GGCTTCTCATCGTCGCCA 59.816 61.111 0.00 0.00 40.41 5.69
2785 3899 2.956964 CGGCTTCTCATCGTCGCC 60.957 66.667 0.00 0.00 37.40 5.54
2786 3900 2.956964 CCGGCTTCTCATCGTCGC 60.957 66.667 0.00 0.00 0.00 5.19
2787 3901 2.956964 GCCGGCTTCTCATCGTCG 60.957 66.667 22.15 0.00 0.00 5.12
2788 3902 2.586357 GGCCGGCTTCTCATCGTC 60.586 66.667 28.56 0.41 0.00 4.20
2789 3903 4.514577 CGGCCGGCTTCTCATCGT 62.515 66.667 28.56 0.00 0.00 3.73
2791 3905 3.798954 CTCCGGCCGGCTTCTCATC 62.799 68.421 39.89 6.45 34.68 2.92
2792 3906 3.854669 CTCCGGCCGGCTTCTCAT 61.855 66.667 39.89 0.00 34.68 2.90
2794 3908 3.507597 GATCTCCGGCCGGCTTCTC 62.508 68.421 39.89 26.26 34.68 2.87
2795 3909 3.541713 GATCTCCGGCCGGCTTCT 61.542 66.667 39.89 22.78 34.68 2.85
2796 3910 4.610714 GGATCTCCGGCCGGCTTC 62.611 72.222 39.89 30.64 34.68 3.86
2806 3920 1.153549 AGCAAAGCGTCGGATCTCC 60.154 57.895 0.00 0.00 0.00 3.71
2807 3921 1.424493 CCAGCAAAGCGTCGGATCTC 61.424 60.000 0.00 0.00 0.00 2.75
2808 3922 1.448540 CCAGCAAAGCGTCGGATCT 60.449 57.895 0.00 0.00 0.00 2.75
2809 3923 3.093278 CCAGCAAAGCGTCGGATC 58.907 61.111 0.00 0.00 0.00 3.36
2810 3924 3.127533 GCCAGCAAAGCGTCGGAT 61.128 61.111 0.00 0.00 0.00 4.18
2811 3925 3.825160 AAGCCAGCAAAGCGTCGGA 62.825 57.895 0.00 0.00 34.64 4.55
2812 3926 3.314388 GAAGCCAGCAAAGCGTCGG 62.314 63.158 0.00 0.00 34.64 4.79
2813 3927 2.174349 GAAGCCAGCAAAGCGTCG 59.826 61.111 0.00 0.00 34.64 5.12
2814 3928 1.208614 CTGAAGCCAGCAAAGCGTC 59.791 57.895 0.00 2.48 38.93 5.19
2815 3929 2.263741 CCTGAAGCCAGCAAAGCGT 61.264 57.895 0.00 0.00 39.07 5.07
2816 3930 1.968017 TCCTGAAGCCAGCAAAGCG 60.968 57.895 0.00 0.00 39.07 4.68
2817 3931 1.583477 GTCCTGAAGCCAGCAAAGC 59.417 57.895 0.00 0.00 39.07 3.51
2818 3932 1.871772 CGTCCTGAAGCCAGCAAAG 59.128 57.895 0.00 0.00 39.07 2.77
2819 3933 2.260869 GCGTCCTGAAGCCAGCAAA 61.261 57.895 0.00 0.00 39.07 3.68
2820 3934 2.669569 GCGTCCTGAAGCCAGCAA 60.670 61.111 0.00 0.00 39.07 3.91
2822 3936 3.642778 TACGCGTCCTGAAGCCAGC 62.643 63.158 18.63 0.00 39.07 4.85
2823 3937 1.805945 GTACGCGTCCTGAAGCCAG 60.806 63.158 18.63 0.00 40.09 4.85
2824 3938 2.260434 GTACGCGTCCTGAAGCCA 59.740 61.111 18.63 0.00 32.09 4.75
2825 3939 2.879462 CGTACGCGTCCTGAAGCC 60.879 66.667 18.63 0.00 32.09 4.35
2826 3940 2.879462 CCGTACGCGTCCTGAAGC 60.879 66.667 18.63 0.00 36.15 3.86
2827 3941 2.202570 CCCGTACGCGTCCTGAAG 60.203 66.667 18.63 0.00 36.15 3.02
2828 3942 4.424566 GCCCGTACGCGTCCTGAA 62.425 66.667 18.63 0.00 36.15 3.02
2853 3967 2.281761 ATGATGAATCCGCCCGGC 60.282 61.111 0.00 0.00 34.68 6.13
2854 3968 1.672356 GGATGATGAATCCGCCCGG 60.672 63.158 0.00 0.00 45.62 5.73
2855 3969 3.972227 GGATGATGAATCCGCCCG 58.028 61.111 0.00 0.00 45.62 6.13
2861 3975 2.671177 CGCGCGGGGATGATGAATC 61.671 63.158 24.84 0.00 34.19 2.52
2862 3976 2.666190 CGCGCGGGGATGATGAAT 60.666 61.111 24.84 0.00 0.00 2.57
2863 3977 3.790334 CTCGCGCGGGGATGATGAA 62.790 63.158 31.69 4.97 0.00 2.57
2864 3978 4.284860 CTCGCGCGGGGATGATGA 62.285 66.667 31.69 5.83 0.00 2.92
2928 4042 3.330720 AAGAAGGCCCGGGACAGG 61.331 66.667 32.91 0.00 0.00 4.00
2929 4043 2.045926 CAAGAAGGCCCGGGACAG 60.046 66.667 32.91 8.94 0.00 3.51
2930 4044 3.646715 CCAAGAAGGCCCGGGACA 61.647 66.667 32.91 0.00 0.00 4.02
2947 4061 4.700365 GCGGAACAGGGCAAACGC 62.700 66.667 0.00 0.00 40.19 4.84
2948 4062 4.038080 GGCGGAACAGGGCAAACG 62.038 66.667 0.00 0.00 0.00 3.60
2949 4063 4.038080 CGGCGGAACAGGGCAAAC 62.038 66.667 0.00 0.00 0.00 2.93
2966 4080 3.591254 GAGGCTGTCACCACCGACC 62.591 68.421 0.00 0.00 34.88 4.79
2967 4081 2.048127 GAGGCTGTCACCACCGAC 60.048 66.667 0.00 0.00 36.40 4.79
2968 4082 3.311110 GGAGGCTGTCACCACCGA 61.311 66.667 0.00 0.00 30.33 4.69
2969 4083 4.394712 GGGAGGCTGTCACCACCG 62.395 72.222 0.00 0.00 41.08 4.94
2970 4084 4.394712 CGGGAGGCTGTCACCACC 62.395 72.222 0.00 0.00 39.56 4.61
2971 4085 3.311110 TCGGGAGGCTGTCACCAC 61.311 66.667 0.00 0.00 0.00 4.16
2972 4086 3.311110 GTCGGGAGGCTGTCACCA 61.311 66.667 0.00 0.00 0.00 4.17
2973 4087 4.436998 CGTCGGGAGGCTGTCACC 62.437 72.222 0.00 0.00 0.00 4.02
2980 4094 3.591254 AAGTTCAGCGTCGGGAGGC 62.591 63.158 5.27 5.27 42.05 4.70
2981 4095 1.004918 AAAGTTCAGCGTCGGGAGG 60.005 57.895 0.00 0.00 0.00 4.30
2982 4096 1.344942 CGAAAGTTCAGCGTCGGGAG 61.345 60.000 0.00 0.00 0.00 4.30
2983 4097 1.372499 CGAAAGTTCAGCGTCGGGA 60.372 57.895 0.00 0.00 0.00 5.14
2984 4098 3.011760 GCGAAAGTTCAGCGTCGGG 62.012 63.158 0.00 0.00 34.13 5.14
2985 4099 2.470286 GCGAAAGTTCAGCGTCGG 59.530 61.111 0.00 0.00 34.13 4.79
2986 4100 1.557443 AAGGCGAAAGTTCAGCGTCG 61.557 55.000 0.00 0.00 34.41 5.12
2987 4101 0.164002 GAAGGCGAAAGTTCAGCGTC 59.836 55.000 0.00 0.00 0.00 5.19
2988 4102 1.228657 GGAAGGCGAAAGTTCAGCGT 61.229 55.000 0.00 0.00 0.00 5.07
2989 4103 1.227999 TGGAAGGCGAAAGTTCAGCG 61.228 55.000 0.00 0.00 0.00 5.18
2990 4104 0.519077 CTGGAAGGCGAAAGTTCAGC 59.481 55.000 0.00 0.00 0.00 4.26
2991 4105 1.801178 GACTGGAAGGCGAAAGTTCAG 59.199 52.381 0.00 0.00 39.30 3.02
2992 4106 1.878953 GACTGGAAGGCGAAAGTTCA 58.121 50.000 0.00 0.00 39.30 3.18
3002 4116 0.458025 GTCTAACGCCGACTGGAAGG 60.458 60.000 0.00 0.00 39.30 3.46
3003 4117 0.242825 TGTCTAACGCCGACTGGAAG 59.757 55.000 0.00 0.00 42.29 3.46
3004 4118 0.892755 ATGTCTAACGCCGACTGGAA 59.107 50.000 0.00 0.00 37.49 3.53
3005 4119 2.575108 ATGTCTAACGCCGACTGGA 58.425 52.632 0.00 0.00 37.49 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.