Multiple sequence alignment - TraesCS6B01G274400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G274400 chr6B 100.000 2549 0 0 1 2549 495749890 495752438 0.000000e+00 4708.0
1 TraesCS6B01G274400 chr6B 97.218 1977 34 9 573 2549 660437743 660435788 0.000000e+00 3326.0
2 TraesCS6B01G274400 chr6B 87.288 236 23 6 48 281 244954700 244954470 1.940000e-66 263.0
3 TraesCS6B01G274400 chr6B 100.000 52 0 0 313 364 76197029 76197080 2.090000e-16 97.1
4 TraesCS6B01G274400 chr6B 87.302 63 2 2 1 62 189802294 189802351 1.640000e-07 67.6
5 TraesCS6B01G274400 chr6A 97.270 1978 32 10 573 2549 617222869 617220913 0.000000e+00 3334.0
6 TraesCS6B01G274400 chr6A 96.918 1979 39 10 572 2549 533982323 533980366 0.000000e+00 3297.0
7 TraesCS6B01G274400 chr6A 96.529 1988 44 9 564 2549 616131287 616133251 0.000000e+00 3265.0
8 TraesCS6B01G274400 chr6A 96.694 121 2 2 282 402 465250372 465250254 1.550000e-47 200.0
9 TraesCS6B01G274400 chr3B 97.117 1977 36 9 573 2549 379294093 379296048 0.000000e+00 3315.0
10 TraesCS6B01G274400 chr3B 96.817 1979 42 6 571 2549 812516876 812514919 0.000000e+00 3286.0
11 TraesCS6B01G274400 chr3B 87.500 64 1 5 1 64 242276284 242276340 1.640000e-07 67.6
12 TraesCS6B01G274400 chr3B 87.500 64 1 5 1 64 282353569 282353513 1.640000e-07 67.6
13 TraesCS6B01G274400 chr7A 97.069 1979 37 9 572 2549 701581940 701583898 0.000000e+00 3314.0
14 TraesCS6B01G274400 chr7A 96.918 1979 38 8 573 2549 618102487 618100530 0.000000e+00 3295.0
15 TraesCS6B01G274400 chr7A 96.486 1992 45 10 560 2549 332474966 332472998 0.000000e+00 3267.0
16 TraesCS6B01G274400 chr7A 89.316 234 16 4 53 281 357695210 357694981 4.150000e-73 285.0
17 TraesCS6B01G274400 chr7A 88.333 240 25 2 42 281 706490249 706490013 4.150000e-73 285.0
18 TraesCS6B01G274400 chr7B 97.022 1981 37 10 571 2549 552932145 552930185 0.000000e+00 3312.0
19 TraesCS6B01G274400 chr7B 96.918 1979 40 9 571 2549 552850596 552852553 0.000000e+00 3297.0
20 TraesCS6B01G274400 chr7B 87.500 64 1 5 1 64 23208965 23209021 1.640000e-07 67.6
21 TraesCS6B01G274400 chr4A 97.020 1980 38 6 571 2549 36562911 36564870 0.000000e+00 3310.0
22 TraesCS6B01G274400 chr4A 87.712 236 23 4 48 281 440189229 440189460 1.160000e-68 270.0
23 TraesCS6B01G274400 chr4A 90.698 43 1 3 1542 1584 738262441 738262402 1.000000e-03 54.7
24 TraesCS6B01G274400 chr1B 96.870 1981 37 10 571 2549 42162340 42160383 0.000000e+00 3291.0
25 TraesCS6B01G274400 chr1B 96.817 1979 42 9 571 2549 7851074 7853031 0.000000e+00 3286.0
26 TraesCS6B01G274400 chr1B 88.525 61 2 5 1 60 139553125 139553181 4.550000e-08 69.4
27 TraesCS6B01G274400 chr4B 96.815 1978 41 10 572 2549 407108831 407106876 0.000000e+00 3284.0
28 TraesCS6B01G274400 chr4B 87.500 64 1 5 1 64 427626650 427626706 1.640000e-07 67.6
29 TraesCS6B01G274400 chr4B 100.000 29 0 0 1558 1586 566424592 566424620 1.000000e-03 54.7
30 TraesCS6B01G274400 chr3A 96.628 1987 45 7 563 2549 54951908 54953872 0.000000e+00 3278.0
31 TraesCS6B01G274400 chr3A 96.362 1979 40 8 572 2549 65962239 65960292 0.000000e+00 3227.0
32 TraesCS6B01G274400 chr3A 91.026 234 18 1 48 281 279554509 279554739 1.900000e-81 313.0
33 TraesCS6B01G274400 chr2A 90.598 234 16 5 48 281 702943913 702943686 3.190000e-79 305.0
34 TraesCS6B01G274400 chr2A 87.826 230 25 1 52 281 36196285 36196511 1.500000e-67 267.0
35 TraesCS6B01G274400 chr5D 90.213 235 18 4 48 281 557779018 557778788 4.120000e-78 302.0
36 TraesCS6B01G274400 chr5D 88.333 60 5 2 1 60 553945689 553945746 1.270000e-08 71.3
37 TraesCS6B01G274400 chr7D 87.083 240 21 5 48 281 591012763 591012998 1.940000e-66 263.0
38 TraesCS6B01G274400 chr6D 87.047 193 14 6 286 468 326567497 326567306 9.240000e-50 207.0
39 TraesCS6B01G274400 chr5B 89.062 64 1 4 1 64 402984855 402984912 9.780000e-10 75.0
40 TraesCS6B01G274400 chr5B 87.500 64 1 5 1 64 393769845 393769789 1.640000e-07 67.6
41 TraesCS6B01G274400 chr2D 96.875 32 1 0 1558 1589 238965817 238965786 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G274400 chr6B 495749890 495752438 2548 False 4708 4708 100.000 1 2549 1 chr6B.!!$F3 2548
1 TraesCS6B01G274400 chr6B 660435788 660437743 1955 True 3326 3326 97.218 573 2549 1 chr6B.!!$R2 1976
2 TraesCS6B01G274400 chr6A 617220913 617222869 1956 True 3334 3334 97.270 573 2549 1 chr6A.!!$R3 1976
3 TraesCS6B01G274400 chr6A 533980366 533982323 1957 True 3297 3297 96.918 572 2549 1 chr6A.!!$R2 1977
4 TraesCS6B01G274400 chr6A 616131287 616133251 1964 False 3265 3265 96.529 564 2549 1 chr6A.!!$F1 1985
5 TraesCS6B01G274400 chr3B 379294093 379296048 1955 False 3315 3315 97.117 573 2549 1 chr3B.!!$F2 1976
6 TraesCS6B01G274400 chr3B 812514919 812516876 1957 True 3286 3286 96.817 571 2549 1 chr3B.!!$R2 1978
7 TraesCS6B01G274400 chr7A 701581940 701583898 1958 False 3314 3314 97.069 572 2549 1 chr7A.!!$F1 1977
8 TraesCS6B01G274400 chr7A 618100530 618102487 1957 True 3295 3295 96.918 573 2549 1 chr7A.!!$R3 1976
9 TraesCS6B01G274400 chr7A 332472998 332474966 1968 True 3267 3267 96.486 560 2549 1 chr7A.!!$R1 1989
10 TraesCS6B01G274400 chr7B 552930185 552932145 1960 True 3312 3312 97.022 571 2549 1 chr7B.!!$R1 1978
11 TraesCS6B01G274400 chr7B 552850596 552852553 1957 False 3297 3297 96.918 571 2549 1 chr7B.!!$F2 1978
12 TraesCS6B01G274400 chr4A 36562911 36564870 1959 False 3310 3310 97.020 571 2549 1 chr4A.!!$F1 1978
13 TraesCS6B01G274400 chr1B 42160383 42162340 1957 True 3291 3291 96.870 571 2549 1 chr1B.!!$R1 1978
14 TraesCS6B01G274400 chr1B 7851074 7853031 1957 False 3286 3286 96.817 571 2549 1 chr1B.!!$F1 1978
15 TraesCS6B01G274400 chr4B 407106876 407108831 1955 True 3284 3284 96.815 572 2549 1 chr4B.!!$R1 1977
16 TraesCS6B01G274400 chr3A 54951908 54953872 1964 False 3278 3278 96.628 563 2549 1 chr3A.!!$F1 1986
17 TraesCS6B01G274400 chr3A 65960292 65962239 1947 True 3227 3227 96.362 572 2549 1 chr3A.!!$R1 1977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
308 309 0.027063 AACAAACGAACGGAGCAACG 59.973 50.0 0.0 0.0 40.31 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2263 2269 1.879575 TCCTTCCCTACCCATGTCAG 58.12 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.840124 GGGACCTATAAACCAGGACAG 57.160 52.381 0.00 0.00 36.61 3.51
36 37 2.438392 GGGACCTATAAACCAGGACAGG 59.562 54.545 0.00 0.00 36.61 4.00
37 38 3.381335 GGACCTATAAACCAGGACAGGA 58.619 50.000 0.00 0.00 36.61 3.86
38 39 3.134262 GGACCTATAAACCAGGACAGGAC 59.866 52.174 0.00 0.00 36.61 3.85
39 40 2.764572 ACCTATAAACCAGGACAGGACG 59.235 50.000 0.00 0.00 36.61 4.79
40 41 2.102588 CCTATAAACCAGGACAGGACGG 59.897 54.545 0.00 0.00 34.91 4.79
41 42 1.946984 ATAAACCAGGACAGGACGGA 58.053 50.000 0.00 0.00 0.00 4.69
42 43 1.263356 TAAACCAGGACAGGACGGAG 58.737 55.000 0.00 0.00 0.00 4.63
43 44 1.481056 AAACCAGGACAGGACGGAGG 61.481 60.000 0.00 0.00 0.00 4.30
44 45 2.283966 CCAGGACAGGACGGAGGT 60.284 66.667 0.00 0.00 0.00 3.85
45 46 1.000019 CCAGGACAGGACGGAGGTA 60.000 63.158 0.00 0.00 0.00 3.08
46 47 1.038130 CCAGGACAGGACGGAGGTAG 61.038 65.000 0.00 0.00 0.00 3.18
47 48 0.323542 CAGGACAGGACGGAGGTAGT 60.324 60.000 0.00 0.00 0.00 2.73
48 49 1.064906 CAGGACAGGACGGAGGTAGTA 60.065 57.143 0.00 0.00 0.00 1.82
49 50 1.212441 AGGACAGGACGGAGGTAGTAG 59.788 57.143 0.00 0.00 0.00 2.57
50 51 1.064832 GGACAGGACGGAGGTAGTAGT 60.065 57.143 0.00 0.00 0.00 2.73
51 52 2.620108 GGACAGGACGGAGGTAGTAGTT 60.620 54.545 0.00 0.00 0.00 2.24
52 53 3.370953 GGACAGGACGGAGGTAGTAGTTA 60.371 52.174 0.00 0.00 0.00 2.24
53 54 3.876320 GACAGGACGGAGGTAGTAGTTAG 59.124 52.174 0.00 0.00 0.00 2.34
54 55 3.265479 ACAGGACGGAGGTAGTAGTTAGT 59.735 47.826 0.00 0.00 0.00 2.24
55 56 4.471386 ACAGGACGGAGGTAGTAGTTAGTA 59.529 45.833 0.00 0.00 0.00 1.82
56 57 5.131809 ACAGGACGGAGGTAGTAGTTAGTAT 59.868 44.000 0.00 0.00 0.00 2.12
57 58 5.700373 CAGGACGGAGGTAGTAGTTAGTATC 59.300 48.000 0.00 0.00 0.00 2.24
58 59 5.367937 AGGACGGAGGTAGTAGTTAGTATCA 59.632 44.000 0.00 0.00 0.00 2.15
59 60 6.044171 AGGACGGAGGTAGTAGTTAGTATCAT 59.956 42.308 0.00 0.00 0.00 2.45
60 61 6.149142 GGACGGAGGTAGTAGTTAGTATCATG 59.851 46.154 0.00 0.00 0.00 3.07
61 62 5.472820 ACGGAGGTAGTAGTTAGTATCATGC 59.527 44.000 0.00 0.00 0.00 4.06
62 63 5.472478 CGGAGGTAGTAGTTAGTATCATGCA 59.528 44.000 0.00 0.00 0.00 3.96
63 64 6.151312 CGGAGGTAGTAGTTAGTATCATGCAT 59.849 42.308 0.00 0.00 0.00 3.96
64 65 7.316640 GGAGGTAGTAGTTAGTATCATGCATG 58.683 42.308 21.07 21.07 0.00 4.06
65 66 6.692486 AGGTAGTAGTTAGTATCATGCATGC 58.308 40.000 22.25 11.82 0.00 4.06
66 67 5.869888 GGTAGTAGTTAGTATCATGCATGCC 59.130 44.000 22.25 11.72 0.00 4.40
67 68 5.551305 AGTAGTTAGTATCATGCATGCCA 57.449 39.130 22.25 8.84 0.00 4.92
68 69 5.928976 AGTAGTTAGTATCATGCATGCCAA 58.071 37.500 22.25 5.34 0.00 4.52
69 70 5.760253 AGTAGTTAGTATCATGCATGCCAAC 59.240 40.000 22.25 17.59 0.00 3.77
70 71 3.885297 AGTTAGTATCATGCATGCCAACC 59.115 43.478 22.25 7.57 0.00 3.77
71 72 2.440517 AGTATCATGCATGCCAACCA 57.559 45.000 22.25 3.72 0.00 3.67
72 73 2.304092 AGTATCATGCATGCCAACCAG 58.696 47.619 22.25 0.00 0.00 4.00
73 74 2.092267 AGTATCATGCATGCCAACCAGA 60.092 45.455 22.25 2.12 0.00 3.86
74 75 1.108776 ATCATGCATGCCAACCAGAC 58.891 50.000 22.25 0.00 0.00 3.51
75 76 0.251253 TCATGCATGCCAACCAGACA 60.251 50.000 22.25 0.00 0.00 3.41
76 77 0.604073 CATGCATGCCAACCAGACAA 59.396 50.000 14.93 0.00 0.00 3.18
77 78 1.206132 CATGCATGCCAACCAGACAAT 59.794 47.619 14.93 0.00 0.00 2.71
78 79 1.340088 TGCATGCCAACCAGACAATT 58.660 45.000 16.68 0.00 0.00 2.32
79 80 1.693062 TGCATGCCAACCAGACAATTT 59.307 42.857 16.68 0.00 0.00 1.82
80 81 2.104451 TGCATGCCAACCAGACAATTTT 59.896 40.909 16.68 0.00 0.00 1.82
81 82 2.481185 GCATGCCAACCAGACAATTTTG 59.519 45.455 6.36 0.00 0.00 2.44
82 83 3.803021 GCATGCCAACCAGACAATTTTGA 60.803 43.478 6.36 0.00 0.00 2.69
83 84 3.451141 TGCCAACCAGACAATTTTGAC 57.549 42.857 0.00 0.00 0.00 3.18
84 85 2.223688 TGCCAACCAGACAATTTTGACG 60.224 45.455 0.00 0.00 0.00 4.35
85 86 2.034053 GCCAACCAGACAATTTTGACGA 59.966 45.455 0.00 0.00 0.00 4.20
86 87 3.853307 GCCAACCAGACAATTTTGACGAG 60.853 47.826 0.00 0.00 0.00 4.18
87 88 3.304659 CCAACCAGACAATTTTGACGAGG 60.305 47.826 0.00 2.27 0.00 4.63
88 89 3.208747 ACCAGACAATTTTGACGAGGT 57.791 42.857 0.00 2.84 33.96 3.85
89 90 2.878406 ACCAGACAATTTTGACGAGGTG 59.122 45.455 10.27 0.00 35.93 4.00
90 91 2.878406 CCAGACAATTTTGACGAGGTGT 59.122 45.455 0.00 0.00 0.00 4.16
104 105 5.991328 ACGAGGTGTCATAGCATTAAATG 57.009 39.130 0.00 0.00 0.00 2.32
105 106 5.670485 ACGAGGTGTCATAGCATTAAATGA 58.330 37.500 0.00 0.00 0.00 2.57
106 107 6.112734 ACGAGGTGTCATAGCATTAAATGAA 58.887 36.000 0.00 0.00 34.06 2.57
107 108 6.258727 ACGAGGTGTCATAGCATTAAATGAAG 59.741 38.462 0.00 0.00 34.06 3.02
108 109 6.479990 CGAGGTGTCATAGCATTAAATGAAGA 59.520 38.462 0.00 0.00 34.06 2.87
109 110 7.011389 CGAGGTGTCATAGCATTAAATGAAGAA 59.989 37.037 0.00 0.00 34.06 2.52
110 111 8.579850 AGGTGTCATAGCATTAAATGAAGAAA 57.420 30.769 0.00 0.00 34.06 2.52
111 112 9.023962 AGGTGTCATAGCATTAAATGAAGAAAA 57.976 29.630 0.00 0.00 34.06 2.29
112 113 9.638239 GGTGTCATAGCATTAAATGAAGAAAAA 57.362 29.630 0.00 0.00 34.06 1.94
142 143 9.388506 AGTGGAGTATCATAATAAATGCTATGC 57.611 33.333 0.00 0.00 36.25 3.14
143 144 9.388506 GTGGAGTATCATAATAAATGCTATGCT 57.611 33.333 0.00 0.00 36.25 3.79
154 155 7.864108 ATAAATGCTATGCTACTTTGTGTCA 57.136 32.000 0.00 0.00 0.00 3.58
155 156 6.764308 AAATGCTATGCTACTTTGTGTCAT 57.236 33.333 0.00 0.00 0.00 3.06
156 157 5.746307 ATGCTATGCTACTTTGTGTCATG 57.254 39.130 0.00 0.00 0.00 3.07
157 158 3.374988 TGCTATGCTACTTTGTGTCATGC 59.625 43.478 0.00 0.00 0.00 4.06
158 159 3.374988 GCTATGCTACTTTGTGTCATGCA 59.625 43.478 0.00 0.00 35.34 3.96
159 160 4.036027 GCTATGCTACTTTGTGTCATGCAT 59.964 41.667 0.00 0.00 40.50 3.96
160 161 3.835378 TGCTACTTTGTGTCATGCATG 57.165 42.857 21.07 21.07 0.00 4.06
161 162 3.410508 TGCTACTTTGTGTCATGCATGA 58.589 40.909 25.42 25.42 0.00 3.07
214 215 8.851145 ACTATATGATACTATGCATTACGGAGG 58.149 37.037 3.54 0.00 0.00 4.30
215 216 7.661536 ATATGATACTATGCATTACGGAGGT 57.338 36.000 3.54 0.00 0.00 3.85
216 217 8.762481 ATATGATACTATGCATTACGGAGGTA 57.238 34.615 3.54 0.00 0.00 3.08
217 218 6.510879 TGATACTATGCATTACGGAGGTAG 57.489 41.667 3.54 0.00 0.00 3.18
218 219 6.008331 TGATACTATGCATTACGGAGGTAGT 58.992 40.000 3.54 0.88 0.00 2.73
219 220 7.170277 TGATACTATGCATTACGGAGGTAGTA 58.830 38.462 3.54 3.44 0.00 1.82
220 221 7.832685 TGATACTATGCATTACGGAGGTAGTAT 59.167 37.037 3.54 8.56 36.89 2.12
221 222 6.512342 ACTATGCATTACGGAGGTAGTATC 57.488 41.667 3.54 0.00 0.00 2.24
222 223 6.008331 ACTATGCATTACGGAGGTAGTATCA 58.992 40.000 3.54 0.00 0.00 2.15
223 224 6.663953 ACTATGCATTACGGAGGTAGTATCAT 59.336 38.462 3.54 0.00 0.00 2.45
224 225 7.832685 ACTATGCATTACGGAGGTAGTATCATA 59.167 37.037 3.54 0.00 0.00 2.15
225 226 6.263516 TGCATTACGGAGGTAGTATCATAC 57.736 41.667 0.00 0.00 0.00 2.39
226 227 5.771165 TGCATTACGGAGGTAGTATCATACA 59.229 40.000 0.00 0.00 0.00 2.29
227 228 6.091437 GCATTACGGAGGTAGTATCATACAC 58.909 44.000 0.00 0.00 0.00 2.90
228 229 6.072064 GCATTACGGAGGTAGTATCATACACT 60.072 42.308 0.00 0.00 0.00 3.55
229 230 7.120285 GCATTACGGAGGTAGTATCATACACTA 59.880 40.741 0.00 0.00 0.00 2.74
230 231 7.969536 TTACGGAGGTAGTATCATACACTAC 57.030 40.000 0.00 4.44 45.01 2.73
231 232 6.185114 ACGGAGGTAGTATCATACACTACT 57.815 41.667 11.28 0.00 45.06 2.57
232 233 7.308450 ACGGAGGTAGTATCATACACTACTA 57.692 40.000 11.28 0.00 45.06 1.82
233 234 7.385267 ACGGAGGTAGTATCATACACTACTAG 58.615 42.308 11.28 0.00 45.06 2.57
234 235 7.016072 ACGGAGGTAGTATCATACACTACTAGT 59.984 40.741 0.00 0.00 45.06 2.57
235 236 8.526978 CGGAGGTAGTATCATACACTACTAGTA 58.473 40.741 1.89 1.89 45.06 1.82
236 237 9.651913 GGAGGTAGTATCATACACTACTAGTAC 57.348 40.741 11.28 0.00 45.06 2.73
237 238 9.651913 GAGGTAGTATCATACACTACTAGTACC 57.348 40.741 11.28 0.00 45.06 3.34
238 239 9.163894 AGGTAGTATCATACACTACTAGTACCA 57.836 37.037 11.28 0.00 45.06 3.25
239 240 9.956640 GGTAGTATCATACACTACTAGTACCAT 57.043 37.037 11.28 0.00 45.06 3.55
244 245 8.879427 ATCATACACTACTAGTACCATATGCA 57.121 34.615 0.00 0.00 0.00 3.96
245 246 8.879427 TCATACACTACTAGTACCATATGCAT 57.121 34.615 3.79 3.79 0.00 3.96
246 247 8.739972 TCATACACTACTAGTACCATATGCATG 58.260 37.037 10.16 0.00 0.00 4.06
247 248 8.739972 CATACACTACTAGTACCATATGCATGA 58.260 37.037 10.16 0.00 33.67 3.07
248 249 7.782897 ACACTACTAGTACCATATGCATGAT 57.217 36.000 10.16 0.00 33.67 2.45
249 250 8.879427 ACACTACTAGTACCATATGCATGATA 57.121 34.615 10.16 0.00 33.67 2.15
250 251 8.740906 ACACTACTAGTACCATATGCATGATAC 58.259 37.037 10.16 6.43 31.94 2.24
251 252 8.961634 CACTACTAGTACCATATGCATGATACT 58.038 37.037 10.16 13.05 42.99 2.12
278 279 9.601810 AGTATATGATACTCTCCATTACAACCA 57.398 33.333 0.00 0.00 0.00 3.67
279 280 9.862371 GTATATGATACTCTCCATTACAACCAG 57.138 37.037 0.00 0.00 0.00 4.00
280 281 5.023533 TGATACTCTCCATTACAACCAGC 57.976 43.478 0.00 0.00 0.00 4.85
281 282 2.386661 ACTCTCCATTACAACCAGCG 57.613 50.000 0.00 0.00 0.00 5.18
282 283 1.899814 ACTCTCCATTACAACCAGCGA 59.100 47.619 0.00 0.00 0.00 4.93
283 284 2.501723 ACTCTCCATTACAACCAGCGAT 59.498 45.455 0.00 0.00 0.00 4.58
284 285 3.126831 CTCTCCATTACAACCAGCGATC 58.873 50.000 0.00 0.00 0.00 3.69
285 286 2.499693 TCTCCATTACAACCAGCGATCA 59.500 45.455 0.00 0.00 0.00 2.92
286 287 3.055458 TCTCCATTACAACCAGCGATCAA 60.055 43.478 0.00 0.00 0.00 2.57
287 288 3.006940 TCCATTACAACCAGCGATCAAC 58.993 45.455 0.00 0.00 0.00 3.18
288 289 2.223021 CCATTACAACCAGCGATCAACG 60.223 50.000 0.00 0.00 45.66 4.10
289 290 2.442212 TTACAACCAGCGATCAACGA 57.558 45.000 0.00 0.00 45.77 3.85
290 291 2.442212 TACAACCAGCGATCAACGAA 57.558 45.000 0.00 0.00 45.77 3.85
291 292 0.865769 ACAACCAGCGATCAACGAAC 59.134 50.000 0.00 0.00 45.77 3.95
292 293 0.865111 CAACCAGCGATCAACGAACA 59.135 50.000 0.00 0.00 45.77 3.18
293 294 1.262950 CAACCAGCGATCAACGAACAA 59.737 47.619 0.00 0.00 45.77 2.83
294 295 1.588674 ACCAGCGATCAACGAACAAA 58.411 45.000 0.00 0.00 45.77 2.83
295 296 1.263217 ACCAGCGATCAACGAACAAAC 59.737 47.619 0.00 0.00 45.77 2.93
296 297 1.580439 CAGCGATCAACGAACAAACG 58.420 50.000 0.00 0.00 45.77 3.60
297 298 1.191425 CAGCGATCAACGAACAAACGA 59.809 47.619 0.00 0.00 45.77 3.85
298 299 1.862201 AGCGATCAACGAACAAACGAA 59.138 42.857 0.00 0.00 45.77 3.85
299 300 1.960549 GCGATCAACGAACAAACGAAC 59.039 47.619 0.00 0.00 45.77 3.95
300 301 2.211248 CGATCAACGAACAAACGAACG 58.789 47.619 0.00 0.00 45.77 3.95
301 302 2.556806 GATCAACGAACAAACGAACGG 58.443 47.619 0.00 0.00 37.03 4.44
302 303 1.638133 TCAACGAACAAACGAACGGA 58.362 45.000 0.00 0.00 37.03 4.69
303 304 1.589320 TCAACGAACAAACGAACGGAG 59.411 47.619 0.00 0.00 37.03 4.63
304 305 0.302589 AACGAACAAACGAACGGAGC 59.697 50.000 0.00 0.00 37.03 4.70
305 306 0.806884 ACGAACAAACGAACGGAGCA 60.807 50.000 0.00 0.00 37.03 4.26
306 307 0.302288 CGAACAAACGAACGGAGCAA 59.698 50.000 0.00 0.00 35.09 3.91
307 308 1.738432 GAACAAACGAACGGAGCAAC 58.262 50.000 0.00 0.00 0.00 4.17
308 309 0.027063 AACAAACGAACGGAGCAACG 59.973 50.000 0.00 0.00 40.31 4.10
309 310 1.083015 CAAACGAACGGAGCAACGG 60.083 57.895 5.09 0.00 38.39 4.44
310 311 2.888998 AAACGAACGGAGCAACGGC 61.889 57.895 5.09 0.00 38.39 5.68
311 312 4.595538 ACGAACGGAGCAACGGCA 62.596 61.111 5.09 0.00 44.61 5.69
312 313 3.342627 CGAACGGAGCAACGGCAA 61.343 61.111 5.09 0.00 44.61 4.52
313 314 2.677003 CGAACGGAGCAACGGCAAT 61.677 57.895 5.09 0.00 44.61 3.56
314 315 1.154225 GAACGGAGCAACGGCAATG 60.154 57.895 5.09 0.00 44.61 2.82
315 316 3.267597 AACGGAGCAACGGCAATGC 62.268 57.895 0.00 0.00 44.61 3.56
316 317 3.736100 CGGAGCAACGGCAATGCA 61.736 61.111 7.79 0.00 46.22 3.96
317 318 2.887360 GGAGCAACGGCAATGCAT 59.113 55.556 7.79 0.00 46.22 3.96
318 319 1.517694 GGAGCAACGGCAATGCATG 60.518 57.895 7.79 4.01 46.22 4.06
329 330 2.706555 CAATGCATGCCTAGCTGATG 57.293 50.000 16.68 0.00 0.00 3.07
330 331 0.959553 AATGCATGCCTAGCTGATGC 59.040 50.000 16.68 12.42 42.38 3.91
331 332 0.894184 ATGCATGCCTAGCTGATGCC 60.894 55.000 16.68 3.46 41.54 4.40
332 333 1.527611 GCATGCCTAGCTGATGCCA 60.528 57.895 6.36 0.00 40.80 4.92
333 334 1.105167 GCATGCCTAGCTGATGCCAA 61.105 55.000 6.36 0.00 40.80 4.52
334 335 0.666913 CATGCCTAGCTGATGCCAAC 59.333 55.000 0.00 0.00 40.80 3.77
335 336 0.816825 ATGCCTAGCTGATGCCAACG 60.817 55.000 0.00 0.00 40.80 4.10
336 337 1.450312 GCCTAGCTGATGCCAACGT 60.450 57.895 0.00 0.00 40.80 3.99
337 338 1.709147 GCCTAGCTGATGCCAACGTG 61.709 60.000 0.00 0.00 40.80 4.49
338 339 0.108186 CCTAGCTGATGCCAACGTGA 60.108 55.000 0.00 0.00 40.80 4.35
339 340 1.675714 CCTAGCTGATGCCAACGTGAA 60.676 52.381 0.00 0.00 40.80 3.18
340 341 1.662629 CTAGCTGATGCCAACGTGAAG 59.337 52.381 0.00 0.00 40.80 3.02
341 342 0.957395 AGCTGATGCCAACGTGAAGG 60.957 55.000 0.00 0.00 40.80 3.46
342 343 1.926511 GCTGATGCCAACGTGAAGGG 61.927 60.000 0.00 0.00 0.00 3.95
346 347 2.597510 GCCAACGTGAAGGGCCTT 60.598 61.111 21.09 21.09 41.90 4.35
347 348 2.200337 GCCAACGTGAAGGGCCTTT 61.200 57.895 21.92 0.00 41.90 3.11
348 349 0.891904 GCCAACGTGAAGGGCCTTTA 60.892 55.000 21.92 14.37 41.90 1.85
349 350 1.611519 CCAACGTGAAGGGCCTTTAA 58.388 50.000 21.92 9.47 0.00 1.52
350 351 2.167662 CCAACGTGAAGGGCCTTTAAT 58.832 47.619 21.92 5.20 0.00 1.40
351 352 2.094752 CCAACGTGAAGGGCCTTTAATG 60.095 50.000 21.92 18.56 0.00 1.90
352 353 1.834188 ACGTGAAGGGCCTTTAATGG 58.166 50.000 21.92 11.37 0.00 3.16
353 354 1.353022 ACGTGAAGGGCCTTTAATGGA 59.647 47.619 21.92 0.00 0.00 3.41
354 355 2.224917 ACGTGAAGGGCCTTTAATGGAA 60.225 45.455 21.92 0.00 0.00 3.53
355 356 2.163613 CGTGAAGGGCCTTTAATGGAAC 59.836 50.000 21.92 5.27 0.00 3.62
356 357 2.496070 GTGAAGGGCCTTTAATGGAACC 59.504 50.000 21.92 11.44 0.00 3.62
357 358 1.749063 GAAGGGCCTTTAATGGAACCG 59.251 52.381 21.92 0.00 32.98 4.44
358 359 0.996583 AGGGCCTTTAATGGAACCGA 59.003 50.000 11.47 0.00 32.98 4.69
359 360 1.356398 AGGGCCTTTAATGGAACCGAA 59.644 47.619 11.47 0.00 32.98 4.30
360 361 1.749063 GGGCCTTTAATGGAACCGAAG 59.251 52.381 11.47 0.00 0.00 3.79
361 362 2.619590 GGGCCTTTAATGGAACCGAAGA 60.620 50.000 11.47 0.00 0.00 2.87
362 363 2.683362 GGCCTTTAATGGAACCGAAGAG 59.317 50.000 11.47 0.00 0.00 2.85
363 364 2.097629 GCCTTTAATGGAACCGAAGAGC 59.902 50.000 11.47 0.00 0.00 4.09
364 365 2.683362 CCTTTAATGGAACCGAAGAGCC 59.317 50.000 1.00 0.00 0.00 4.70
365 366 2.413310 TTAATGGAACCGAAGAGCCC 57.587 50.000 0.00 0.00 0.00 5.19
366 367 0.177141 TAATGGAACCGAAGAGCCCG 59.823 55.000 0.00 0.00 0.00 6.13
367 368 1.550130 AATGGAACCGAAGAGCCCGA 61.550 55.000 0.00 0.00 0.00 5.14
368 369 1.550130 ATGGAACCGAAGAGCCCGAA 61.550 55.000 0.00 0.00 0.00 4.30
369 370 1.004200 GGAACCGAAGAGCCCGAAA 60.004 57.895 0.00 0.00 0.00 3.46
370 371 1.019805 GGAACCGAAGAGCCCGAAAG 61.020 60.000 0.00 0.00 0.00 2.62
371 372 1.636570 GAACCGAAGAGCCCGAAAGC 61.637 60.000 0.00 0.00 0.00 3.51
378 379 3.483587 AGCCCGAAAGCTCCTTGA 58.516 55.556 0.00 0.00 39.48 3.02
379 380 1.994463 AGCCCGAAAGCTCCTTGAT 59.006 52.632 0.00 0.00 39.48 2.57
380 381 0.107459 AGCCCGAAAGCTCCTTGATC 60.107 55.000 0.00 0.00 39.48 2.92
381 382 1.432270 GCCCGAAAGCTCCTTGATCG 61.432 60.000 0.00 0.00 0.00 3.69
382 383 0.175760 CCCGAAAGCTCCTTGATCGA 59.824 55.000 0.00 0.00 35.65 3.59
383 384 1.202580 CCCGAAAGCTCCTTGATCGAT 60.203 52.381 0.00 0.00 35.65 3.59
384 385 1.863454 CCGAAAGCTCCTTGATCGATG 59.137 52.381 0.54 0.00 35.65 3.84
385 386 2.544685 CGAAAGCTCCTTGATCGATGT 58.455 47.619 0.54 0.00 35.65 3.06
386 387 2.537625 CGAAAGCTCCTTGATCGATGTC 59.462 50.000 0.54 0.00 35.65 3.06
387 388 3.736433 CGAAAGCTCCTTGATCGATGTCT 60.736 47.826 0.54 0.00 35.65 3.41
388 389 4.498177 CGAAAGCTCCTTGATCGATGTCTA 60.498 45.833 0.54 0.00 35.65 2.59
389 390 4.314740 AAGCTCCTTGATCGATGTCTAC 57.685 45.455 0.54 0.00 0.00 2.59
390 391 3.291584 AGCTCCTTGATCGATGTCTACA 58.708 45.455 0.54 0.00 0.00 2.74
391 392 3.894427 AGCTCCTTGATCGATGTCTACAT 59.106 43.478 0.54 0.00 39.70 2.29
392 393 3.986572 GCTCCTTGATCGATGTCTACATG 59.013 47.826 0.54 0.00 36.57 3.21
393 394 3.982475 TCCTTGATCGATGTCTACATGC 58.018 45.455 0.54 0.00 36.57 4.06
394 395 3.384467 TCCTTGATCGATGTCTACATGCA 59.616 43.478 0.54 0.00 36.57 3.96
395 396 4.039609 TCCTTGATCGATGTCTACATGCAT 59.960 41.667 0.54 0.00 36.57 3.96
396 397 5.243730 TCCTTGATCGATGTCTACATGCATA 59.756 40.000 0.54 0.00 36.57 3.14
397 398 5.575995 CCTTGATCGATGTCTACATGCATAG 59.424 44.000 0.54 0.00 36.57 2.23
398 399 4.488879 TGATCGATGTCTACATGCATAGC 58.511 43.478 0.54 0.00 36.57 2.97
399 400 4.022068 TGATCGATGTCTACATGCATAGCA 60.022 41.667 0.54 0.00 44.86 3.49
400 401 3.642705 TCGATGTCTACATGCATAGCAC 58.357 45.455 0.00 0.00 43.04 4.40
401 402 3.068024 TCGATGTCTACATGCATAGCACA 59.932 43.478 0.00 0.36 43.04 4.57
402 403 3.183172 CGATGTCTACATGCATAGCACAC 59.817 47.826 0.00 0.00 43.04 3.82
403 404 2.539476 TGTCTACATGCATAGCACACG 58.461 47.619 0.00 0.00 43.04 4.49
404 405 1.258982 GTCTACATGCATAGCACACGC 59.741 52.381 0.00 0.00 43.04 5.34
405 406 1.134848 TCTACATGCATAGCACACGCA 60.135 47.619 0.00 0.00 43.04 5.24
406 407 1.869132 CTACATGCATAGCACACGCAT 59.131 47.619 0.00 0.00 46.98 4.73
407 408 0.659427 ACATGCATAGCACACGCATC 59.341 50.000 0.00 0.00 44.30 3.91
408 409 0.658897 CATGCATAGCACACGCATCA 59.341 50.000 0.00 0.00 44.30 3.07
409 410 1.265905 CATGCATAGCACACGCATCAT 59.734 47.619 0.00 0.00 44.30 2.45
410 411 0.658897 TGCATAGCACACGCATCATG 59.341 50.000 0.00 0.00 42.27 3.07
411 412 0.659427 GCATAGCACACGCATCATGT 59.341 50.000 0.00 0.00 42.27 3.21
412 413 1.866601 GCATAGCACACGCATCATGTA 59.133 47.619 0.00 0.00 42.27 2.29
413 414 2.481568 GCATAGCACACGCATCATGTAT 59.518 45.455 0.00 0.00 42.27 2.29
414 415 3.679502 GCATAGCACACGCATCATGTATA 59.320 43.478 0.00 0.00 42.27 1.47
415 416 4.201656 GCATAGCACACGCATCATGTATAG 60.202 45.833 0.00 0.00 42.27 1.31
416 417 3.459232 AGCACACGCATCATGTATAGT 57.541 42.857 0.00 0.00 42.27 2.12
417 418 4.584327 AGCACACGCATCATGTATAGTA 57.416 40.909 0.00 0.00 42.27 1.82
418 419 4.550422 AGCACACGCATCATGTATAGTAG 58.450 43.478 0.00 0.00 42.27 2.57
419 420 3.121944 GCACACGCATCATGTATAGTAGC 59.878 47.826 0.00 0.00 38.36 3.58
420 421 4.298332 CACACGCATCATGTATAGTAGCA 58.702 43.478 0.00 0.00 0.00 3.49
421 422 4.383948 CACACGCATCATGTATAGTAGCAG 59.616 45.833 0.00 0.00 0.00 4.24
422 423 4.278419 ACACGCATCATGTATAGTAGCAGA 59.722 41.667 0.00 0.00 0.00 4.26
423 424 5.047731 ACACGCATCATGTATAGTAGCAGAT 60.048 40.000 0.00 0.00 0.00 2.90
424 425 5.866092 CACGCATCATGTATAGTAGCAGATT 59.134 40.000 0.00 0.00 0.00 2.40
425 426 5.866092 ACGCATCATGTATAGTAGCAGATTG 59.134 40.000 0.00 0.00 0.00 2.67
426 427 5.866092 CGCATCATGTATAGTAGCAGATTGT 59.134 40.000 0.00 0.00 0.00 2.71
427 428 7.029563 CGCATCATGTATAGTAGCAGATTGTA 58.970 38.462 0.00 0.00 0.00 2.41
428 429 7.008719 CGCATCATGTATAGTAGCAGATTGTAC 59.991 40.741 0.00 0.00 0.00 2.90
429 430 8.031864 GCATCATGTATAGTAGCAGATTGTACT 58.968 37.037 0.00 0.00 33.92 2.73
430 431 9.351570 CATCATGTATAGTAGCAGATTGTACTG 57.648 37.037 0.00 0.00 40.43 2.74
431 432 7.886338 TCATGTATAGTAGCAGATTGTACTGG 58.114 38.462 0.00 0.00 38.22 4.00
432 433 6.085555 TGTATAGTAGCAGATTGTACTGGC 57.914 41.667 0.00 0.00 38.22 4.85
433 434 5.833667 TGTATAGTAGCAGATTGTACTGGCT 59.166 40.000 0.00 0.00 38.22 4.75
434 435 5.878406 ATAGTAGCAGATTGTACTGGCTT 57.122 39.130 0.00 0.00 38.22 4.35
435 436 6.978674 ATAGTAGCAGATTGTACTGGCTTA 57.021 37.500 0.00 0.00 38.22 3.09
436 437 5.269505 AGTAGCAGATTGTACTGGCTTAG 57.730 43.478 0.00 0.00 38.22 2.18
437 438 2.911484 AGCAGATTGTACTGGCTTAGC 58.089 47.619 0.00 0.00 38.22 3.09
438 439 2.503356 AGCAGATTGTACTGGCTTAGCT 59.497 45.455 3.59 0.00 38.22 3.32
439 440 3.706594 AGCAGATTGTACTGGCTTAGCTA 59.293 43.478 3.59 0.00 38.22 3.32
440 441 4.162320 AGCAGATTGTACTGGCTTAGCTAA 59.838 41.667 5.94 5.94 38.22 3.09
441 442 4.876107 GCAGATTGTACTGGCTTAGCTAAA 59.124 41.667 7.74 0.00 38.22 1.85
442 443 5.529060 GCAGATTGTACTGGCTTAGCTAAAT 59.471 40.000 7.74 0.00 38.22 1.40
443 444 6.512415 GCAGATTGTACTGGCTTAGCTAAATG 60.512 42.308 7.74 0.00 38.22 2.32
444 445 6.017605 CAGATTGTACTGGCTTAGCTAAATGG 60.018 42.308 7.74 0.00 34.64 3.16
445 446 5.429681 TTGTACTGGCTTAGCTAAATGGA 57.570 39.130 7.74 0.00 0.00 3.41
446 447 5.630415 TGTACTGGCTTAGCTAAATGGAT 57.370 39.130 7.74 0.00 0.00 3.41
447 448 5.611374 TGTACTGGCTTAGCTAAATGGATC 58.389 41.667 7.74 0.00 0.00 3.36
448 449 3.733337 ACTGGCTTAGCTAAATGGATCG 58.267 45.455 7.74 0.00 0.00 3.69
449 450 3.070018 CTGGCTTAGCTAAATGGATCGG 58.930 50.000 7.74 0.00 0.00 4.18
450 451 1.807142 GGCTTAGCTAAATGGATCGGC 59.193 52.381 7.74 4.69 0.00 5.54
451 452 2.494059 GCTTAGCTAAATGGATCGGCA 58.506 47.619 7.74 0.00 0.00 5.69
452 453 2.224314 GCTTAGCTAAATGGATCGGCAC 59.776 50.000 7.74 0.00 0.00 5.01
453 454 2.543777 TAGCTAAATGGATCGGCACC 57.456 50.000 0.00 0.00 0.00 5.01
454 455 0.532862 AGCTAAATGGATCGGCACCG 60.533 55.000 1.73 1.73 41.35 4.94
455 456 0.814010 GCTAAATGGATCGGCACCGT 60.814 55.000 9.23 0.00 40.74 4.83
456 457 1.663695 CTAAATGGATCGGCACCGTT 58.336 50.000 9.23 0.00 40.74 4.44
457 458 1.330521 CTAAATGGATCGGCACCGTTG 59.669 52.381 9.23 0.00 40.74 4.10
458 459 1.312371 AAATGGATCGGCACCGTTGG 61.312 55.000 9.23 0.00 40.74 3.77
460 461 4.778143 GGATCGGCACCGTTGGCT 62.778 66.667 9.23 0.00 46.25 4.75
461 462 2.185867 GATCGGCACCGTTGGCTA 59.814 61.111 9.23 0.00 46.25 3.93
462 463 1.883084 GATCGGCACCGTTGGCTAG 60.883 63.158 9.23 0.00 46.25 3.42
463 464 3.385749 ATCGGCACCGTTGGCTAGG 62.386 63.158 9.23 0.00 46.25 3.02
464 465 4.077184 CGGCACCGTTGGCTAGGA 62.077 66.667 4.73 0.00 46.25 2.94
465 466 2.590092 GGCACCGTTGGCTAGGAT 59.410 61.111 0.00 0.00 44.99 3.24
466 467 1.523938 GGCACCGTTGGCTAGGATC 60.524 63.158 0.00 0.00 44.99 3.36
467 468 1.523938 GCACCGTTGGCTAGGATCC 60.524 63.158 2.48 2.48 0.00 3.36
468 469 1.227263 CACCGTTGGCTAGGATCCG 60.227 63.158 5.98 0.00 0.00 4.18
469 470 1.380785 ACCGTTGGCTAGGATCCGA 60.381 57.895 5.98 0.00 0.00 4.55
470 471 1.364171 CCGTTGGCTAGGATCCGAG 59.636 63.158 17.01 17.01 0.00 4.63
471 472 1.300233 CGTTGGCTAGGATCCGAGC 60.300 63.158 32.29 32.29 42.60 5.03
472 473 1.823295 GTTGGCTAGGATCCGAGCA 59.177 57.895 37.59 25.01 44.61 4.26
473 474 0.530870 GTTGGCTAGGATCCGAGCAC 60.531 60.000 37.59 27.62 44.61 4.40
474 475 0.975556 TTGGCTAGGATCCGAGCACA 60.976 55.000 37.59 30.39 44.61 4.57
475 476 0.975556 TGGCTAGGATCCGAGCACAA 60.976 55.000 37.59 24.33 44.61 3.33
476 477 0.178068 GGCTAGGATCCGAGCACAAA 59.822 55.000 37.59 6.16 44.61 2.83
477 478 1.406887 GGCTAGGATCCGAGCACAAAA 60.407 52.381 37.59 5.22 44.61 2.44
478 479 1.936547 GCTAGGATCCGAGCACAAAAG 59.063 52.381 34.20 11.41 42.81 2.27
479 480 1.936547 CTAGGATCCGAGCACAAAAGC 59.063 52.381 9.11 0.00 0.00 3.51
480 481 1.021390 AGGATCCGAGCACAAAAGCG 61.021 55.000 5.98 0.00 40.15 4.68
481 482 1.019278 GGATCCGAGCACAAAAGCGA 61.019 55.000 0.00 0.00 40.15 4.93
482 483 0.095417 GATCCGAGCACAAAAGCGAC 59.905 55.000 0.00 0.00 40.15 5.19
483 484 1.626654 ATCCGAGCACAAAAGCGACG 61.627 55.000 0.00 0.00 40.15 5.12
484 485 2.594962 CCGAGCACAAAAGCGACGT 61.595 57.895 0.00 0.00 40.15 4.34
485 486 1.437089 CGAGCACAAAAGCGACGTG 60.437 57.895 0.00 0.00 40.15 4.49
486 487 1.082756 GAGCACAAAAGCGACGTGG 60.083 57.895 0.00 0.00 40.15 4.94
487 488 2.725815 GCACAAAAGCGACGTGGC 60.726 61.111 15.38 15.38 0.00 5.01
488 489 2.051345 CACAAAAGCGACGTGGCC 60.051 61.111 19.50 0.00 0.00 5.36
489 490 3.645975 ACAAAAGCGACGTGGCCG 61.646 61.111 19.50 4.69 40.83 6.13
490 491 4.383602 CAAAAGCGACGTGGCCGG 62.384 66.667 19.50 0.00 38.78 6.13
491 492 4.922026 AAAAGCGACGTGGCCGGT 62.922 61.111 19.50 6.46 39.59 5.28
493 494 2.992607 AAAAGCGACGTGGCCGGTTA 62.993 55.000 19.50 0.00 45.29 2.85
494 495 4.729856 AGCGACGTGGCCGGTTAC 62.730 66.667 19.50 1.18 38.78 2.50
519 520 2.046314 GCCGGCAGCACCTTCTTA 60.046 61.111 24.80 0.00 42.97 2.10
520 521 1.674322 GCCGGCAGCACCTTCTTAA 60.674 57.895 24.80 0.00 42.97 1.85
521 522 1.032114 GCCGGCAGCACCTTCTTAAT 61.032 55.000 24.80 0.00 42.97 1.40
522 523 1.463674 CCGGCAGCACCTTCTTAATT 58.536 50.000 0.00 0.00 35.61 1.40
523 524 2.639065 CCGGCAGCACCTTCTTAATTA 58.361 47.619 0.00 0.00 35.61 1.40
524 525 3.013921 CCGGCAGCACCTTCTTAATTAA 58.986 45.455 0.00 0.00 35.61 1.40
525 526 3.442273 CCGGCAGCACCTTCTTAATTAAA 59.558 43.478 0.00 0.00 35.61 1.52
526 527 4.097892 CCGGCAGCACCTTCTTAATTAAAT 59.902 41.667 0.00 0.00 35.61 1.40
527 528 5.036737 CGGCAGCACCTTCTTAATTAAATG 58.963 41.667 0.00 0.00 35.61 2.32
528 529 5.351458 GGCAGCACCTTCTTAATTAAATGG 58.649 41.667 0.00 4.66 34.51 3.16
529 530 5.127031 GGCAGCACCTTCTTAATTAAATGGA 59.873 40.000 14.11 1.06 34.51 3.41
530 531 6.036470 GCAGCACCTTCTTAATTAAATGGAC 58.964 40.000 14.11 8.17 0.00 4.02
531 532 6.350110 GCAGCACCTTCTTAATTAAATGGACA 60.350 38.462 14.11 0.00 0.00 4.02
532 533 7.253422 CAGCACCTTCTTAATTAAATGGACAG 58.747 38.462 14.11 7.47 0.00 3.51
533 534 6.036470 GCACCTTCTTAATTAAATGGACAGC 58.964 40.000 14.11 11.42 0.00 4.40
534 535 6.564328 CACCTTCTTAATTAAATGGACAGCC 58.436 40.000 14.11 0.00 0.00 4.85
543 544 4.371975 TGGACAGCCACGCTTTAC 57.628 55.556 0.00 0.00 39.92 2.01
544 545 1.448069 TGGACAGCCACGCTTTACA 59.552 52.632 0.00 0.00 39.92 2.41
545 546 0.036164 TGGACAGCCACGCTTTACAT 59.964 50.000 0.00 0.00 39.92 2.29
546 547 0.727398 GGACAGCCACGCTTTACATC 59.273 55.000 0.00 0.00 36.40 3.06
547 548 0.727398 GACAGCCACGCTTTACATCC 59.273 55.000 0.00 0.00 36.40 3.51
548 549 0.676782 ACAGCCACGCTTTACATCCC 60.677 55.000 0.00 0.00 36.40 3.85
549 550 1.449601 AGCCACGCTTTACATCCCG 60.450 57.895 0.00 0.00 33.89 5.14
550 551 1.743995 GCCACGCTTTACATCCCGT 60.744 57.895 0.00 0.00 0.00 5.28
552 553 0.672401 CCACGCTTTACATCCCGTGT 60.672 55.000 10.50 0.00 46.77 4.49
553 554 0.442310 CACGCTTTACATCCCGTGTG 59.558 55.000 4.09 0.00 44.15 3.82
554 555 0.672401 ACGCTTTACATCCCGTGTGG 60.672 55.000 0.00 0.00 42.24 4.17
555 556 1.800681 GCTTTACATCCCGTGTGGC 59.199 57.895 0.00 0.00 42.24 5.01
556 557 0.676782 GCTTTACATCCCGTGTGGCT 60.677 55.000 0.00 0.00 42.24 4.75
557 558 1.369625 CTTTACATCCCGTGTGGCTC 58.630 55.000 0.00 0.00 42.24 4.70
558 559 0.390603 TTTACATCCCGTGTGGCTCG 60.391 55.000 0.00 0.00 42.24 5.03
565 566 2.631428 CGTGTGGCTCGTGGTTTG 59.369 61.111 0.00 0.00 0.00 2.93
591 592 9.938280 GTTTTAAGGGTTAATTATCCTTTTGCT 57.062 29.630 19.39 4.84 40.86 3.91
596 597 7.182060 AGGGTTAATTATCCTTTTGCTCTCAA 58.818 34.615 11.51 0.00 0.00 3.02
601 602 9.693739 TTAATTATCCTTTTGCTCTCAATGGTA 57.306 29.630 0.00 0.00 32.01 3.25
619 621 4.406456 TGGTATCCATGTGCTCAGTTTTT 58.594 39.130 0.00 0.00 0.00 1.94
621 623 4.702131 GGTATCCATGTGCTCAGTTTTTCT 59.298 41.667 0.00 0.00 0.00 2.52
934 936 1.268283 GGAAGCTAGCTGTGGAGGGT 61.268 60.000 20.16 0.00 0.00 4.34
1018 1020 1.558756 CCATGTCTTCCTCAAGCTCCT 59.441 52.381 0.00 0.00 0.00 3.69
1550 1552 7.002250 TGAAAATGTATGGAAAGGCATGAAA 57.998 32.000 0.00 0.00 0.00 2.69
1551 1553 7.098477 TGAAAATGTATGGAAAGGCATGAAAG 58.902 34.615 0.00 0.00 0.00 2.62
1552 1554 5.603170 AATGTATGGAAAGGCATGAAAGG 57.397 39.130 0.00 0.00 0.00 3.11
1563 1565 3.788333 GCATGAAAGGCTGCAAGATAA 57.212 42.857 0.50 0.00 42.67 1.75
1564 1566 4.317671 GCATGAAAGGCTGCAAGATAAT 57.682 40.909 0.50 0.00 42.67 1.28
1565 1567 4.690122 GCATGAAAGGCTGCAAGATAATT 58.310 39.130 0.50 0.00 42.67 1.40
1566 1568 5.114081 GCATGAAAGGCTGCAAGATAATTT 58.886 37.500 0.50 0.00 42.67 1.82
1567 1569 5.583457 GCATGAAAGGCTGCAAGATAATTTT 59.417 36.000 0.50 0.00 42.67 1.82
1568 1570 6.238022 GCATGAAAGGCTGCAAGATAATTTTC 60.238 38.462 0.50 0.00 42.67 2.29
1569 1571 6.343716 TGAAAGGCTGCAAGATAATTTTCA 57.656 33.333 0.50 2.14 34.07 2.69
1570 1572 6.938507 TGAAAGGCTGCAAGATAATTTTCAT 58.061 32.000 0.50 0.00 34.07 2.57
1571 1573 6.814644 TGAAAGGCTGCAAGATAATTTTCATG 59.185 34.615 0.50 0.00 34.07 3.07
1572 1574 5.927281 AGGCTGCAAGATAATTTTCATGT 57.073 34.783 0.50 0.00 34.07 3.21
1573 1575 5.657474 AGGCTGCAAGATAATTTTCATGTG 58.343 37.500 0.50 0.00 34.07 3.21
1574 1576 5.419788 AGGCTGCAAGATAATTTTCATGTGA 59.580 36.000 0.50 0.00 34.07 3.58
1575 1577 5.747197 GGCTGCAAGATAATTTTCATGTGAG 59.253 40.000 0.50 2.17 34.07 3.51
1576 1578 5.747197 GCTGCAAGATAATTTTCATGTGAGG 59.253 40.000 0.00 0.00 34.07 3.86
1577 1579 5.653507 TGCAAGATAATTTTCATGTGAGGC 58.346 37.500 3.64 0.00 0.00 4.70
1578 1580 5.419788 TGCAAGATAATTTTCATGTGAGGCT 59.580 36.000 0.00 0.00 0.00 4.58
1579 1581 5.747197 GCAAGATAATTTTCATGTGAGGCTG 59.253 40.000 0.00 0.00 0.00 4.85
1580 1582 5.511234 AGATAATTTTCATGTGAGGCTGC 57.489 39.130 0.00 0.00 0.00 5.25
1581 1583 4.951715 AGATAATTTTCATGTGAGGCTGCA 59.048 37.500 0.50 0.00 0.00 4.41
1582 1584 5.419788 AGATAATTTTCATGTGAGGCTGCAA 59.580 36.000 0.50 0.00 0.00 4.08
1583 1585 3.587797 ATTTTCATGTGAGGCTGCAAG 57.412 42.857 0.50 0.00 0.00 4.01
1584 1586 2.275134 TTTCATGTGAGGCTGCAAGA 57.725 45.000 0.50 0.00 34.07 3.02
2263 2269 2.482839 GCTAGGACAGATGGCAAGACTC 60.483 54.545 0.00 0.00 0.00 3.36
2304 2310 7.813331 AGGAAGGTATACATAGTGAGACTGTA 58.187 38.462 5.01 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.611977 GGTCCCCTTTGTAGTTTGTGC 59.388 52.381 0.00 0.00 0.00 4.57
1 2 3.223674 AGGTCCCCTTTGTAGTTTGTG 57.776 47.619 0.00 0.00 0.00 3.33
2 3 6.707273 TTATAGGTCCCCTTTGTAGTTTGT 57.293 37.500 0.00 0.00 34.61 2.83
3 4 6.376299 GGTTTATAGGTCCCCTTTGTAGTTTG 59.624 42.308 0.00 0.00 34.61 2.93
4 5 6.045813 TGGTTTATAGGTCCCCTTTGTAGTTT 59.954 38.462 0.00 0.00 34.61 2.66
5 6 5.552766 TGGTTTATAGGTCCCCTTTGTAGTT 59.447 40.000 0.00 0.00 34.61 2.24
6 7 5.102967 TGGTTTATAGGTCCCCTTTGTAGT 58.897 41.667 0.00 0.00 34.61 2.73
7 8 5.397559 CCTGGTTTATAGGTCCCCTTTGTAG 60.398 48.000 0.00 0.00 34.61 2.74
8 9 4.475747 CCTGGTTTATAGGTCCCCTTTGTA 59.524 45.833 0.00 0.00 34.61 2.41
9 10 3.268595 CCTGGTTTATAGGTCCCCTTTGT 59.731 47.826 0.00 0.00 34.61 2.83
10 11 3.526019 TCCTGGTTTATAGGTCCCCTTTG 59.474 47.826 0.00 0.00 36.67 2.77
11 12 3.526430 GTCCTGGTTTATAGGTCCCCTTT 59.474 47.826 0.00 0.00 36.67 3.11
12 13 3.120898 GTCCTGGTTTATAGGTCCCCTT 58.879 50.000 0.00 0.00 36.67 3.95
13 14 2.046729 TGTCCTGGTTTATAGGTCCCCT 59.953 50.000 0.00 0.00 36.67 4.79
14 15 2.438392 CTGTCCTGGTTTATAGGTCCCC 59.562 54.545 0.00 0.00 36.67 4.81
15 16 2.438392 CCTGTCCTGGTTTATAGGTCCC 59.562 54.545 0.00 0.00 36.67 4.46
16 17 3.134262 GTCCTGTCCTGGTTTATAGGTCC 59.866 52.174 0.00 0.00 36.67 4.46
17 18 3.181478 CGTCCTGTCCTGGTTTATAGGTC 60.181 52.174 0.00 0.00 36.67 3.85
18 19 2.764572 CGTCCTGTCCTGGTTTATAGGT 59.235 50.000 0.00 0.00 36.67 3.08
19 20 2.102588 CCGTCCTGTCCTGGTTTATAGG 59.897 54.545 0.00 0.00 36.63 2.57
20 21 3.028850 TCCGTCCTGTCCTGGTTTATAG 58.971 50.000 0.00 0.00 0.00 1.31
21 22 3.028850 CTCCGTCCTGTCCTGGTTTATA 58.971 50.000 0.00 0.00 0.00 0.98
22 23 1.831736 CTCCGTCCTGTCCTGGTTTAT 59.168 52.381 0.00 0.00 0.00 1.40
23 24 1.263356 CTCCGTCCTGTCCTGGTTTA 58.737 55.000 0.00 0.00 0.00 2.01
24 25 1.481056 CCTCCGTCCTGTCCTGGTTT 61.481 60.000 0.00 0.00 0.00 3.27
25 26 1.913762 CCTCCGTCCTGTCCTGGTT 60.914 63.158 0.00 0.00 0.00 3.67
26 27 1.797018 TACCTCCGTCCTGTCCTGGT 61.797 60.000 0.00 0.00 0.00 4.00
27 28 1.000019 TACCTCCGTCCTGTCCTGG 60.000 63.158 0.00 0.00 0.00 4.45
28 29 0.323542 ACTACCTCCGTCCTGTCCTG 60.324 60.000 0.00 0.00 0.00 3.86
29 30 1.212441 CTACTACCTCCGTCCTGTCCT 59.788 57.143 0.00 0.00 0.00 3.85
30 31 1.064832 ACTACTACCTCCGTCCTGTCC 60.065 57.143 0.00 0.00 0.00 4.02
31 32 2.416680 ACTACTACCTCCGTCCTGTC 57.583 55.000 0.00 0.00 0.00 3.51
32 33 2.895242 AACTACTACCTCCGTCCTGT 57.105 50.000 0.00 0.00 0.00 4.00
33 34 3.883669 ACTAACTACTACCTCCGTCCTG 58.116 50.000 0.00 0.00 0.00 3.86
34 35 5.367937 TGATACTAACTACTACCTCCGTCCT 59.632 44.000 0.00 0.00 0.00 3.85
35 36 5.615289 TGATACTAACTACTACCTCCGTCC 58.385 45.833 0.00 0.00 0.00 4.79
36 37 6.348376 GCATGATACTAACTACTACCTCCGTC 60.348 46.154 0.00 0.00 0.00 4.79
37 38 5.472820 GCATGATACTAACTACTACCTCCGT 59.527 44.000 0.00 0.00 0.00 4.69
38 39 5.472478 TGCATGATACTAACTACTACCTCCG 59.528 44.000 0.00 0.00 0.00 4.63
39 40 6.896021 TGCATGATACTAACTACTACCTCC 57.104 41.667 0.00 0.00 0.00 4.30
40 41 6.809196 GCATGCATGATACTAACTACTACCTC 59.191 42.308 30.64 1.71 0.00 3.85
41 42 6.295349 GGCATGCATGATACTAACTACTACCT 60.295 42.308 30.64 0.00 0.00 3.08
42 43 5.869888 GGCATGCATGATACTAACTACTACC 59.130 44.000 30.64 12.18 0.00 3.18
43 44 6.455647 TGGCATGCATGATACTAACTACTAC 58.544 40.000 30.64 6.75 0.00 2.73
44 45 6.664428 TGGCATGCATGATACTAACTACTA 57.336 37.500 30.64 3.26 0.00 1.82
45 46 5.551305 TGGCATGCATGATACTAACTACT 57.449 39.130 30.64 0.00 0.00 2.57
46 47 5.049405 GGTTGGCATGCATGATACTAACTAC 60.049 44.000 30.64 14.74 0.00 2.73
47 48 5.063204 GGTTGGCATGCATGATACTAACTA 58.937 41.667 30.64 5.53 0.00 2.24
48 49 3.885297 GGTTGGCATGCATGATACTAACT 59.115 43.478 30.64 0.00 0.00 2.24
49 50 3.631686 TGGTTGGCATGCATGATACTAAC 59.368 43.478 30.64 22.89 0.00 2.34
50 51 3.884693 CTGGTTGGCATGCATGATACTAA 59.115 43.478 30.64 13.55 0.00 2.24
51 52 3.136260 TCTGGTTGGCATGCATGATACTA 59.864 43.478 30.64 18.55 0.00 1.82
52 53 2.092267 TCTGGTTGGCATGCATGATACT 60.092 45.455 30.64 0.00 0.00 2.12
53 54 2.033801 GTCTGGTTGGCATGCATGATAC 59.966 50.000 30.64 21.06 0.00 2.24
54 55 2.300433 GTCTGGTTGGCATGCATGATA 58.700 47.619 30.64 14.66 0.00 2.15
55 56 1.108776 GTCTGGTTGGCATGCATGAT 58.891 50.000 30.64 0.00 0.00 2.45
56 57 0.251253 TGTCTGGTTGGCATGCATGA 60.251 50.000 30.64 7.50 0.00 3.07
57 58 0.604073 TTGTCTGGTTGGCATGCATG 59.396 50.000 22.70 22.70 0.00 4.06
58 59 1.563924 ATTGTCTGGTTGGCATGCAT 58.436 45.000 21.36 0.00 0.00 3.96
59 60 1.340088 AATTGTCTGGTTGGCATGCA 58.660 45.000 21.36 2.54 0.00 3.96
60 61 2.460757 AAATTGTCTGGTTGGCATGC 57.539 45.000 9.90 9.90 0.00 4.06
61 62 3.742369 GTCAAAATTGTCTGGTTGGCATG 59.258 43.478 0.00 0.00 0.00 4.06
62 63 3.552684 CGTCAAAATTGTCTGGTTGGCAT 60.553 43.478 0.00 0.00 0.00 4.40
63 64 2.223688 CGTCAAAATTGTCTGGTTGGCA 60.224 45.455 0.00 0.00 0.00 4.92
64 65 2.034053 TCGTCAAAATTGTCTGGTTGGC 59.966 45.455 0.00 0.00 0.00 4.52
65 66 3.304659 CCTCGTCAAAATTGTCTGGTTGG 60.305 47.826 0.00 0.00 0.00 3.77
66 67 3.315191 ACCTCGTCAAAATTGTCTGGTTG 59.685 43.478 0.00 0.00 0.00 3.77
67 68 3.315191 CACCTCGTCAAAATTGTCTGGTT 59.685 43.478 0.00 0.00 0.00 3.67
68 69 2.878406 CACCTCGTCAAAATTGTCTGGT 59.122 45.455 0.00 0.00 0.00 4.00
69 70 2.878406 ACACCTCGTCAAAATTGTCTGG 59.122 45.455 0.00 0.00 0.00 3.86
70 71 4.133856 GACACCTCGTCAAAATTGTCTG 57.866 45.455 0.00 0.00 44.69 3.51
81 82 5.753438 TCATTTAATGCTATGACACCTCGTC 59.247 40.000 0.00 0.00 45.61 4.20
82 83 5.670485 TCATTTAATGCTATGACACCTCGT 58.330 37.500 0.00 0.00 0.00 4.18
83 84 6.479990 TCTTCATTTAATGCTATGACACCTCG 59.520 38.462 0.00 0.00 30.89 4.63
84 85 7.792374 TCTTCATTTAATGCTATGACACCTC 57.208 36.000 0.00 0.00 30.89 3.85
85 86 8.579850 TTTCTTCATTTAATGCTATGACACCT 57.420 30.769 0.00 0.00 30.89 4.00
86 87 9.638239 TTTTTCTTCATTTAATGCTATGACACC 57.362 29.630 0.00 0.00 30.89 4.16
116 117 9.388506 GCATAGCATTTATTATGATACTCCACT 57.611 33.333 0.00 0.00 30.54 4.00
117 118 9.388506 AGCATAGCATTTATTATGATACTCCAC 57.611 33.333 0.00 0.00 30.54 4.02
128 129 9.389755 TGACACAAAGTAGCATAGCATTTATTA 57.610 29.630 0.00 0.00 0.00 0.98
129 130 8.279970 TGACACAAAGTAGCATAGCATTTATT 57.720 30.769 0.00 0.00 0.00 1.40
130 131 7.864108 TGACACAAAGTAGCATAGCATTTAT 57.136 32.000 0.00 0.00 0.00 1.40
131 132 7.679400 GCATGACACAAAGTAGCATAGCATTTA 60.679 37.037 0.00 0.00 0.00 1.40
132 133 6.558009 CATGACACAAAGTAGCATAGCATTT 58.442 36.000 0.00 0.00 0.00 2.32
133 134 5.449588 GCATGACACAAAGTAGCATAGCATT 60.450 40.000 0.00 0.00 0.00 3.56
134 135 4.036027 GCATGACACAAAGTAGCATAGCAT 59.964 41.667 0.00 0.00 0.00 3.79
135 136 3.374988 GCATGACACAAAGTAGCATAGCA 59.625 43.478 0.00 0.00 0.00 3.49
136 137 3.374988 TGCATGACACAAAGTAGCATAGC 59.625 43.478 0.00 0.00 30.65 2.97
137 138 5.295045 TCATGCATGACACAAAGTAGCATAG 59.705 40.000 25.42 0.00 39.67 2.23
138 139 5.184711 TCATGCATGACACAAAGTAGCATA 58.815 37.500 25.42 0.00 39.67 3.14
139 140 4.011698 TCATGCATGACACAAAGTAGCAT 58.988 39.130 25.42 0.00 41.24 3.79
140 141 3.410508 TCATGCATGACACAAAGTAGCA 58.589 40.909 25.42 0.00 37.13 3.49
188 189 8.851145 CCTCCGTAATGCATAGTATCATATAGT 58.149 37.037 0.00 0.00 0.00 2.12
189 190 8.851145 ACCTCCGTAATGCATAGTATCATATAG 58.149 37.037 0.00 0.00 0.00 1.31
190 191 8.762481 ACCTCCGTAATGCATAGTATCATATA 57.238 34.615 0.00 0.00 0.00 0.86
191 192 7.661536 ACCTCCGTAATGCATAGTATCATAT 57.338 36.000 0.00 0.00 0.00 1.78
192 193 7.832685 ACTACCTCCGTAATGCATAGTATCATA 59.167 37.037 0.00 0.00 0.00 2.15
193 194 6.663953 ACTACCTCCGTAATGCATAGTATCAT 59.336 38.462 0.00 0.00 0.00 2.45
194 195 6.008331 ACTACCTCCGTAATGCATAGTATCA 58.992 40.000 0.00 0.00 0.00 2.15
195 196 6.512342 ACTACCTCCGTAATGCATAGTATC 57.488 41.667 0.00 0.00 0.00 2.24
196 197 7.832685 TGATACTACCTCCGTAATGCATAGTAT 59.167 37.037 11.08 11.08 37.18 2.12
197 198 7.170277 TGATACTACCTCCGTAATGCATAGTA 58.830 38.462 0.00 0.81 0.00 1.82
198 199 6.008331 TGATACTACCTCCGTAATGCATAGT 58.992 40.000 0.00 0.00 0.00 2.12
199 200 6.510879 TGATACTACCTCCGTAATGCATAG 57.489 41.667 0.00 0.00 0.00 2.23
200 201 7.612633 TGTATGATACTACCTCCGTAATGCATA 59.387 37.037 0.00 0.00 0.00 3.14
201 202 6.436218 TGTATGATACTACCTCCGTAATGCAT 59.564 38.462 4.03 0.00 0.00 3.96
202 203 5.771165 TGTATGATACTACCTCCGTAATGCA 59.229 40.000 4.03 0.00 0.00 3.96
203 204 6.072064 AGTGTATGATACTACCTCCGTAATGC 60.072 42.308 4.03 0.00 0.00 3.56
204 205 7.450124 AGTGTATGATACTACCTCCGTAATG 57.550 40.000 4.03 0.00 0.00 1.90
205 206 8.558973 GTAGTGTATGATACTACCTCCGTAAT 57.441 38.462 4.03 0.00 42.85 1.89
206 207 7.969536 GTAGTGTATGATACTACCTCCGTAA 57.030 40.000 4.03 0.00 42.85 3.18
218 219 9.969001 TGCATATGGTACTAGTAGTGTATGATA 57.031 33.333 21.23 12.40 0.00 2.15
219 220 8.879427 TGCATATGGTACTAGTAGTGTATGAT 57.121 34.615 21.23 0.00 0.00 2.45
220 221 8.739972 CATGCATATGGTACTAGTAGTGTATGA 58.260 37.037 21.23 12.62 32.55 2.15
221 222 8.739972 TCATGCATATGGTACTAGTAGTGTATG 58.260 37.037 13.29 14.63 34.97 2.39
222 223 8.879427 TCATGCATATGGTACTAGTAGTGTAT 57.121 34.615 13.29 6.97 34.97 2.29
223 224 8.879427 ATCATGCATATGGTACTAGTAGTGTA 57.121 34.615 13.29 0.00 34.97 2.90
224 225 7.782897 ATCATGCATATGGTACTAGTAGTGT 57.217 36.000 13.29 0.00 34.97 3.55
252 253 9.601810 TGGTTGTAATGGAGAGTATCATATACT 57.398 33.333 0.00 0.00 37.82 2.12
253 254 9.862371 CTGGTTGTAATGGAGAGTATCATATAC 57.138 37.037 0.00 0.00 37.82 1.47
254 255 8.531982 GCTGGTTGTAATGGAGAGTATCATATA 58.468 37.037 0.00 0.00 37.82 0.86
255 256 7.390027 GCTGGTTGTAATGGAGAGTATCATAT 58.610 38.462 0.00 0.00 37.82 1.78
256 257 6.516693 CGCTGGTTGTAATGGAGAGTATCATA 60.517 42.308 0.00 0.00 37.82 2.15
257 258 5.615289 GCTGGTTGTAATGGAGAGTATCAT 58.385 41.667 0.00 0.00 37.82 2.45
258 259 4.441495 CGCTGGTTGTAATGGAGAGTATCA 60.441 45.833 0.00 0.00 37.82 2.15
259 260 4.051922 CGCTGGTTGTAATGGAGAGTATC 58.948 47.826 0.00 0.00 0.00 2.24
260 261 3.704566 TCGCTGGTTGTAATGGAGAGTAT 59.295 43.478 0.00 0.00 0.00 2.12
261 262 3.093814 TCGCTGGTTGTAATGGAGAGTA 58.906 45.455 0.00 0.00 0.00 2.59
262 263 1.899814 TCGCTGGTTGTAATGGAGAGT 59.100 47.619 0.00 0.00 0.00 3.24
263 264 2.672961 TCGCTGGTTGTAATGGAGAG 57.327 50.000 0.00 0.00 0.00 3.20
264 265 2.499693 TGATCGCTGGTTGTAATGGAGA 59.500 45.455 0.00 0.00 0.00 3.71
265 266 2.905075 TGATCGCTGGTTGTAATGGAG 58.095 47.619 0.00 0.00 0.00 3.86
266 267 3.006940 GTTGATCGCTGGTTGTAATGGA 58.993 45.455 0.00 0.00 0.00 3.41
267 268 2.223021 CGTTGATCGCTGGTTGTAATGG 60.223 50.000 0.00 0.00 0.00 3.16
268 269 2.670905 TCGTTGATCGCTGGTTGTAATG 59.329 45.455 0.00 0.00 39.67 1.90
269 270 2.967362 TCGTTGATCGCTGGTTGTAAT 58.033 42.857 0.00 0.00 39.67 1.89
270 271 2.442212 TCGTTGATCGCTGGTTGTAA 57.558 45.000 0.00 0.00 39.67 2.41
271 272 2.063266 GTTCGTTGATCGCTGGTTGTA 58.937 47.619 0.00 0.00 39.67 2.41
272 273 0.865769 GTTCGTTGATCGCTGGTTGT 59.134 50.000 0.00 0.00 39.67 3.32
273 274 0.865111 TGTTCGTTGATCGCTGGTTG 59.135 50.000 0.00 0.00 39.67 3.77
274 275 1.588674 TTGTTCGTTGATCGCTGGTT 58.411 45.000 0.00 0.00 39.67 3.67
275 276 1.263217 GTTTGTTCGTTGATCGCTGGT 59.737 47.619 0.00 0.00 39.67 4.00
276 277 1.721489 CGTTTGTTCGTTGATCGCTGG 60.721 52.381 0.00 0.00 39.67 4.85
277 278 1.191425 TCGTTTGTTCGTTGATCGCTG 59.809 47.619 0.00 0.00 39.67 5.18
278 279 1.493772 TCGTTTGTTCGTTGATCGCT 58.506 45.000 0.00 0.00 39.67 4.93
279 280 1.960549 GTTCGTTTGTTCGTTGATCGC 59.039 47.619 0.00 0.00 39.67 4.58
280 281 2.211248 CGTTCGTTTGTTCGTTGATCG 58.789 47.619 0.00 0.00 41.41 3.69
281 282 2.219216 TCCGTTCGTTTGTTCGTTGATC 59.781 45.455 0.00 0.00 0.00 2.92
282 283 2.203401 TCCGTTCGTTTGTTCGTTGAT 58.797 42.857 0.00 0.00 0.00 2.57
283 284 1.589320 CTCCGTTCGTTTGTTCGTTGA 59.411 47.619 0.00 0.00 0.00 3.18
284 285 1.914257 GCTCCGTTCGTTTGTTCGTTG 60.914 52.381 0.00 0.00 0.00 4.10
285 286 0.302589 GCTCCGTTCGTTTGTTCGTT 59.697 50.000 0.00 0.00 0.00 3.85
286 287 0.806884 TGCTCCGTTCGTTTGTTCGT 60.807 50.000 0.00 0.00 0.00 3.85
287 288 0.302288 TTGCTCCGTTCGTTTGTTCG 59.698 50.000 0.00 0.00 0.00 3.95
288 289 1.738432 GTTGCTCCGTTCGTTTGTTC 58.262 50.000 0.00 0.00 0.00 3.18
289 290 0.027063 CGTTGCTCCGTTCGTTTGTT 59.973 50.000 0.00 0.00 0.00 2.83
290 291 1.639534 CGTTGCTCCGTTCGTTTGT 59.360 52.632 0.00 0.00 0.00 2.83
291 292 1.083015 CCGTTGCTCCGTTCGTTTG 60.083 57.895 0.00 0.00 0.00 2.93
292 293 2.888998 GCCGTTGCTCCGTTCGTTT 61.889 57.895 0.00 0.00 33.53 3.60
293 294 3.343421 GCCGTTGCTCCGTTCGTT 61.343 61.111 0.00 0.00 33.53 3.85
294 295 4.595538 TGCCGTTGCTCCGTTCGT 62.596 61.111 0.00 0.00 38.71 3.85
295 296 2.677003 ATTGCCGTTGCTCCGTTCG 61.677 57.895 0.00 0.00 38.71 3.95
296 297 1.154225 CATTGCCGTTGCTCCGTTC 60.154 57.895 0.00 0.00 38.71 3.95
297 298 2.953821 CATTGCCGTTGCTCCGTT 59.046 55.556 0.00 0.00 38.71 4.44
298 299 3.737172 GCATTGCCGTTGCTCCGT 61.737 61.111 0.00 0.00 37.14 4.69
299 300 3.055080 ATGCATTGCCGTTGCTCCG 62.055 57.895 6.12 0.00 40.77 4.63
300 301 1.517694 CATGCATTGCCGTTGCTCC 60.518 57.895 6.12 0.00 40.77 4.70
301 302 2.162754 GCATGCATTGCCGTTGCTC 61.163 57.895 14.21 0.00 46.15 4.26
302 303 2.125832 GCATGCATTGCCGTTGCT 60.126 55.556 14.21 0.00 46.15 3.91
310 311 1.335964 GCATCAGCTAGGCATGCATTG 60.336 52.381 21.36 15.15 42.18 2.82
311 312 0.959553 GCATCAGCTAGGCATGCATT 59.040 50.000 21.36 9.67 42.18 3.56
312 313 0.894184 GGCATCAGCTAGGCATGCAT 60.894 55.000 21.36 16.31 44.04 3.96
313 314 1.527611 GGCATCAGCTAGGCATGCA 60.528 57.895 21.36 0.00 44.04 3.96
314 315 1.105167 TTGGCATCAGCTAGGCATGC 61.105 55.000 9.90 9.90 41.93 4.06
315 316 0.666913 GTTGGCATCAGCTAGGCATG 59.333 55.000 9.51 0.00 40.17 4.06
316 317 0.816825 CGTTGGCATCAGCTAGGCAT 60.817 55.000 9.51 0.00 40.17 4.40
317 318 1.450134 CGTTGGCATCAGCTAGGCA 60.450 57.895 5.33 5.33 41.70 4.75
318 319 1.450312 ACGTTGGCATCAGCTAGGC 60.450 57.895 0.00 0.00 41.70 3.93
319 320 0.108186 TCACGTTGGCATCAGCTAGG 60.108 55.000 0.00 0.00 41.70 3.02
320 321 1.662629 CTTCACGTTGGCATCAGCTAG 59.337 52.381 0.00 0.00 41.70 3.42
321 322 1.675714 CCTTCACGTTGGCATCAGCTA 60.676 52.381 0.00 0.00 41.70 3.32
322 323 0.957395 CCTTCACGTTGGCATCAGCT 60.957 55.000 0.00 0.00 41.70 4.24
323 324 1.503542 CCTTCACGTTGGCATCAGC 59.496 57.895 0.00 0.00 41.10 4.26
324 325 1.926511 GCCCTTCACGTTGGCATCAG 61.927 60.000 9.59 0.00 44.70 2.90
325 326 1.971167 GCCCTTCACGTTGGCATCA 60.971 57.895 9.59 0.00 44.70 3.07
326 327 2.877691 GCCCTTCACGTTGGCATC 59.122 61.111 9.59 0.00 44.70 3.91
329 330 0.891904 TAAAGGCCCTTCACGTTGGC 60.892 55.000 0.00 6.61 44.59 4.52
330 331 1.611519 TTAAAGGCCCTTCACGTTGG 58.388 50.000 0.00 0.00 0.00 3.77
331 332 2.094752 CCATTAAAGGCCCTTCACGTTG 60.095 50.000 0.00 0.00 0.00 4.10
332 333 2.167662 CCATTAAAGGCCCTTCACGTT 58.832 47.619 0.00 0.00 0.00 3.99
333 334 1.353022 TCCATTAAAGGCCCTTCACGT 59.647 47.619 0.00 0.00 0.00 4.49
334 335 2.122783 TCCATTAAAGGCCCTTCACG 57.877 50.000 0.00 0.00 0.00 4.35
335 336 2.496070 GGTTCCATTAAAGGCCCTTCAC 59.504 50.000 0.00 0.00 0.00 3.18
336 337 2.815158 GGTTCCATTAAAGGCCCTTCA 58.185 47.619 0.00 0.00 0.00 3.02
337 338 1.749063 CGGTTCCATTAAAGGCCCTTC 59.251 52.381 0.00 0.00 0.00 3.46
338 339 1.356398 TCGGTTCCATTAAAGGCCCTT 59.644 47.619 0.00 0.00 0.00 3.95
339 340 0.996583 TCGGTTCCATTAAAGGCCCT 59.003 50.000 0.00 0.00 0.00 5.19
340 341 1.749063 CTTCGGTTCCATTAAAGGCCC 59.251 52.381 0.00 0.00 0.00 5.80
341 342 2.683362 CTCTTCGGTTCCATTAAAGGCC 59.317 50.000 0.00 0.00 0.00 5.19
342 343 2.097629 GCTCTTCGGTTCCATTAAAGGC 59.902 50.000 0.00 0.00 0.00 4.35
343 344 2.683362 GGCTCTTCGGTTCCATTAAAGG 59.317 50.000 0.00 0.00 0.00 3.11
344 345 2.683362 GGGCTCTTCGGTTCCATTAAAG 59.317 50.000 0.00 0.00 0.00 1.85
345 346 2.718563 GGGCTCTTCGGTTCCATTAAA 58.281 47.619 0.00 0.00 0.00 1.52
346 347 1.406341 CGGGCTCTTCGGTTCCATTAA 60.406 52.381 0.00 0.00 0.00 1.40
347 348 0.177141 CGGGCTCTTCGGTTCCATTA 59.823 55.000 0.00 0.00 0.00 1.90
348 349 1.078426 CGGGCTCTTCGGTTCCATT 60.078 57.895 0.00 0.00 0.00 3.16
349 350 1.550130 TTCGGGCTCTTCGGTTCCAT 61.550 55.000 0.00 0.00 0.00 3.41
350 351 1.760479 TTTCGGGCTCTTCGGTTCCA 61.760 55.000 0.00 0.00 0.00 3.53
351 352 1.004200 TTTCGGGCTCTTCGGTTCC 60.004 57.895 0.00 0.00 0.00 3.62
352 353 1.636570 GCTTTCGGGCTCTTCGGTTC 61.637 60.000 0.00 0.00 0.00 3.62
353 354 1.671379 GCTTTCGGGCTCTTCGGTT 60.671 57.895 0.00 0.00 0.00 4.44
354 355 2.047179 GCTTTCGGGCTCTTCGGT 60.047 61.111 0.00 0.00 0.00 4.69
355 356 2.266055 AGCTTTCGGGCTCTTCGG 59.734 61.111 0.00 0.00 38.24 4.30
361 362 0.107459 GATCAAGGAGCTTTCGGGCT 60.107 55.000 0.00 0.00 46.11 5.19
362 363 1.432270 CGATCAAGGAGCTTTCGGGC 61.432 60.000 0.00 0.00 0.00 6.13
363 364 0.175760 TCGATCAAGGAGCTTTCGGG 59.824 55.000 0.00 0.00 28.56 5.14
364 365 1.863454 CATCGATCAAGGAGCTTTCGG 59.137 52.381 0.00 0.00 28.56 4.30
365 366 2.537625 GACATCGATCAAGGAGCTTTCG 59.462 50.000 0.00 0.00 0.00 3.46
366 367 3.791245 AGACATCGATCAAGGAGCTTTC 58.209 45.455 0.00 0.00 0.00 2.62
367 368 3.902881 AGACATCGATCAAGGAGCTTT 57.097 42.857 0.00 0.00 0.00 3.51
368 369 3.701542 TGTAGACATCGATCAAGGAGCTT 59.298 43.478 0.00 0.00 0.00 3.74
369 370 3.291584 TGTAGACATCGATCAAGGAGCT 58.708 45.455 0.00 0.00 0.00 4.09
370 371 3.717400 TGTAGACATCGATCAAGGAGC 57.283 47.619 0.00 0.00 0.00 4.70
371 372 3.986572 GCATGTAGACATCGATCAAGGAG 59.013 47.826 0.00 0.00 33.61 3.69
372 373 3.384467 TGCATGTAGACATCGATCAAGGA 59.616 43.478 0.00 0.00 33.61 3.36
373 374 3.721035 TGCATGTAGACATCGATCAAGG 58.279 45.455 0.00 0.00 33.61 3.61
374 375 5.061933 GCTATGCATGTAGACATCGATCAAG 59.938 44.000 10.16 0.00 33.61 3.02
375 376 4.925646 GCTATGCATGTAGACATCGATCAA 59.074 41.667 10.16 0.00 33.61 2.57
376 377 4.022068 TGCTATGCATGTAGACATCGATCA 60.022 41.667 10.16 0.00 33.61 2.92
377 378 4.325741 GTGCTATGCATGTAGACATCGATC 59.674 45.833 10.16 0.00 41.91 3.69
378 379 4.240888 GTGCTATGCATGTAGACATCGAT 58.759 43.478 10.16 0.00 41.91 3.59
379 380 3.068024 TGTGCTATGCATGTAGACATCGA 59.932 43.478 10.16 0.00 41.91 3.59
380 381 3.183172 GTGTGCTATGCATGTAGACATCG 59.817 47.826 10.16 0.00 41.91 3.84
381 382 3.183172 CGTGTGCTATGCATGTAGACATC 59.817 47.826 10.16 2.12 41.91 3.06
382 383 3.126073 CGTGTGCTATGCATGTAGACAT 58.874 45.455 10.16 0.00 41.91 3.06
383 384 2.539476 CGTGTGCTATGCATGTAGACA 58.461 47.619 10.16 4.07 41.91 3.41
384 385 1.258982 GCGTGTGCTATGCATGTAGAC 59.741 52.381 10.16 6.91 41.91 2.59
385 386 1.134848 TGCGTGTGCTATGCATGTAGA 60.135 47.619 10.16 0.00 46.04 2.59
386 387 1.289276 TGCGTGTGCTATGCATGTAG 58.711 50.000 10.16 0.00 46.04 2.74
387 388 3.450028 TGCGTGTGCTATGCATGTA 57.550 47.368 10.16 0.00 46.04 2.29
388 389 4.299756 TGCGTGTGCTATGCATGT 57.700 50.000 10.16 0.00 46.04 3.21
392 393 0.659427 ACATGATGCGTGTGCTATGC 59.341 50.000 0.00 0.00 43.34 3.14
393 394 4.925646 ACTATACATGATGCGTGTGCTATG 59.074 41.667 0.00 0.00 43.34 2.23
394 395 5.139435 ACTATACATGATGCGTGTGCTAT 57.861 39.130 0.00 0.00 43.34 2.97
395 396 4.584327 ACTATACATGATGCGTGTGCTA 57.416 40.909 0.00 0.00 43.34 3.49
396 397 3.459232 ACTATACATGATGCGTGTGCT 57.541 42.857 0.00 0.00 43.34 4.40
397 398 3.121944 GCTACTATACATGATGCGTGTGC 59.878 47.826 0.00 0.00 43.20 4.57
398 399 4.298332 TGCTACTATACATGATGCGTGTG 58.702 43.478 0.00 0.00 35.12 3.82
399 400 4.278419 TCTGCTACTATACATGATGCGTGT 59.722 41.667 0.00 0.00 37.38 4.49
400 401 4.798574 TCTGCTACTATACATGATGCGTG 58.201 43.478 0.00 0.00 0.00 5.34
401 402 5.651387 ATCTGCTACTATACATGATGCGT 57.349 39.130 0.00 0.00 0.00 5.24
402 403 5.866092 ACAATCTGCTACTATACATGATGCG 59.134 40.000 0.00 0.00 0.00 4.73
403 404 8.031864 AGTACAATCTGCTACTATACATGATGC 58.968 37.037 0.00 0.00 0.00 3.91
404 405 9.351570 CAGTACAATCTGCTACTATACATGATG 57.648 37.037 0.00 0.00 0.00 3.07
405 406 8.526978 CCAGTACAATCTGCTACTATACATGAT 58.473 37.037 0.00 0.00 34.47 2.45
406 407 7.523873 GCCAGTACAATCTGCTACTATACATGA 60.524 40.741 0.00 0.00 34.47 3.07
407 408 6.587990 GCCAGTACAATCTGCTACTATACATG 59.412 42.308 0.00 0.00 34.47 3.21
408 409 6.495181 AGCCAGTACAATCTGCTACTATACAT 59.505 38.462 0.00 0.00 34.47 2.29
409 410 5.833667 AGCCAGTACAATCTGCTACTATACA 59.166 40.000 0.00 0.00 34.47 2.29
410 411 6.334102 AGCCAGTACAATCTGCTACTATAC 57.666 41.667 0.00 0.00 34.47 1.47
411 412 6.978674 AAGCCAGTACAATCTGCTACTATA 57.021 37.500 0.00 0.00 34.47 1.31
412 413 5.878406 AAGCCAGTACAATCTGCTACTAT 57.122 39.130 0.00 0.00 34.47 2.12
413 414 5.221263 GCTAAGCCAGTACAATCTGCTACTA 60.221 44.000 0.00 0.00 34.47 1.82
414 415 4.442192 GCTAAGCCAGTACAATCTGCTACT 60.442 45.833 0.00 0.00 34.47 2.57
415 416 3.804873 GCTAAGCCAGTACAATCTGCTAC 59.195 47.826 0.00 0.00 34.47 3.58
416 417 3.706594 AGCTAAGCCAGTACAATCTGCTA 59.293 43.478 0.00 0.00 34.47 3.49
417 418 2.503356 AGCTAAGCCAGTACAATCTGCT 59.497 45.455 0.00 0.00 34.47 4.24
418 419 2.911484 AGCTAAGCCAGTACAATCTGC 58.089 47.619 0.00 0.00 34.47 4.26
419 420 6.017605 CCATTTAGCTAAGCCAGTACAATCTG 60.018 42.308 6.24 0.00 35.45 2.90
420 421 6.058183 CCATTTAGCTAAGCCAGTACAATCT 58.942 40.000 6.24 0.00 0.00 2.40
421 422 6.055588 TCCATTTAGCTAAGCCAGTACAATC 58.944 40.000 6.24 0.00 0.00 2.67
422 423 6.001449 TCCATTTAGCTAAGCCAGTACAAT 57.999 37.500 6.24 0.00 0.00 2.71
423 424 5.429681 TCCATTTAGCTAAGCCAGTACAA 57.570 39.130 6.24 0.00 0.00 2.41
424 425 5.611374 GATCCATTTAGCTAAGCCAGTACA 58.389 41.667 6.24 0.00 0.00 2.90
425 426 4.686554 CGATCCATTTAGCTAAGCCAGTAC 59.313 45.833 6.24 0.00 0.00 2.73
426 427 4.262463 CCGATCCATTTAGCTAAGCCAGTA 60.262 45.833 6.24 0.00 0.00 2.74
427 428 3.495100 CCGATCCATTTAGCTAAGCCAGT 60.495 47.826 6.24 0.00 0.00 4.00
428 429 3.070018 CCGATCCATTTAGCTAAGCCAG 58.930 50.000 6.24 0.00 0.00 4.85
429 430 2.810400 GCCGATCCATTTAGCTAAGCCA 60.810 50.000 6.24 0.00 0.00 4.75
430 431 1.807142 GCCGATCCATTTAGCTAAGCC 59.193 52.381 6.24 0.00 0.00 4.35
431 432 2.224314 GTGCCGATCCATTTAGCTAAGC 59.776 50.000 6.24 4.82 0.00 3.09
432 433 2.808543 GGTGCCGATCCATTTAGCTAAG 59.191 50.000 6.24 0.00 0.00 2.18
433 434 2.805295 CGGTGCCGATCCATTTAGCTAA 60.805 50.000 4.35 0.86 42.83 3.09
434 435 1.270094 CGGTGCCGATCCATTTAGCTA 60.270 52.381 4.35 0.00 42.83 3.32
435 436 0.532862 CGGTGCCGATCCATTTAGCT 60.533 55.000 4.35 0.00 42.83 3.32
436 437 0.814010 ACGGTGCCGATCCATTTAGC 60.814 55.000 18.16 0.00 42.83 3.09
437 438 1.330521 CAACGGTGCCGATCCATTTAG 59.669 52.381 18.16 0.00 42.83 1.85
438 439 1.374560 CAACGGTGCCGATCCATTTA 58.625 50.000 18.16 0.00 42.83 1.40
439 440 1.312371 CCAACGGTGCCGATCCATTT 61.312 55.000 18.16 0.00 42.83 2.32
440 441 1.748879 CCAACGGTGCCGATCCATT 60.749 57.895 18.16 0.00 42.83 3.16
441 442 2.124736 CCAACGGTGCCGATCCAT 60.125 61.111 18.16 0.00 42.83 3.41
443 444 3.379865 TAGCCAACGGTGCCGATCC 62.380 63.158 18.16 2.87 42.83 3.36
444 445 1.883084 CTAGCCAACGGTGCCGATC 60.883 63.158 18.16 3.28 42.83 3.69
445 446 2.186903 CTAGCCAACGGTGCCGAT 59.813 61.111 18.16 2.02 42.83 4.18
446 447 4.077184 CCTAGCCAACGGTGCCGA 62.077 66.667 18.16 0.00 42.83 5.54
447 448 3.385749 ATCCTAGCCAACGGTGCCG 62.386 63.158 9.29 9.29 46.03 5.69
448 449 1.523938 GATCCTAGCCAACGGTGCC 60.524 63.158 0.00 0.00 0.00 5.01
449 450 1.523938 GGATCCTAGCCAACGGTGC 60.524 63.158 3.84 0.00 0.00 5.01
450 451 1.227263 CGGATCCTAGCCAACGGTG 60.227 63.158 10.75 0.00 0.00 4.94
451 452 1.380785 TCGGATCCTAGCCAACGGT 60.381 57.895 10.75 0.00 0.00 4.83
452 453 1.364171 CTCGGATCCTAGCCAACGG 59.636 63.158 10.75 0.00 0.00 4.44
453 454 1.300233 GCTCGGATCCTAGCCAACG 60.300 63.158 24.42 2.30 32.40 4.10
454 455 0.530870 GTGCTCGGATCCTAGCCAAC 60.531 60.000 29.75 20.48 37.97 3.77
455 456 0.975556 TGTGCTCGGATCCTAGCCAA 60.976 55.000 29.75 17.97 37.97 4.52
456 457 0.975556 TTGTGCTCGGATCCTAGCCA 60.976 55.000 29.75 23.94 37.97 4.75
457 458 0.178068 TTTGTGCTCGGATCCTAGCC 59.822 55.000 29.75 22.06 37.97 3.93
458 459 1.936547 CTTTTGTGCTCGGATCCTAGC 59.063 52.381 27.22 27.22 39.25 3.42
459 460 1.936547 GCTTTTGTGCTCGGATCCTAG 59.063 52.381 10.75 9.79 0.00 3.02
460 461 1.739035 CGCTTTTGTGCTCGGATCCTA 60.739 52.381 10.75 0.00 0.00 2.94
461 462 1.021390 CGCTTTTGTGCTCGGATCCT 61.021 55.000 10.75 0.00 0.00 3.24
462 463 1.019278 TCGCTTTTGTGCTCGGATCC 61.019 55.000 0.00 0.00 0.00 3.36
463 464 0.095417 GTCGCTTTTGTGCTCGGATC 59.905 55.000 0.00 0.00 0.00 3.36
464 465 1.626654 CGTCGCTTTTGTGCTCGGAT 61.627 55.000 0.00 0.00 0.00 4.18
465 466 2.307309 CGTCGCTTTTGTGCTCGGA 61.307 57.895 0.00 0.00 0.00 4.55
466 467 2.170985 CGTCGCTTTTGTGCTCGG 59.829 61.111 0.00 0.00 0.00 4.63
467 468 1.437089 CACGTCGCTTTTGTGCTCG 60.437 57.895 0.00 0.00 35.46 5.03
468 469 1.082756 CCACGTCGCTTTTGTGCTC 60.083 57.895 0.00 0.00 32.32 4.26
469 470 3.022287 CCACGTCGCTTTTGTGCT 58.978 55.556 0.00 0.00 32.32 4.40
470 471 2.725815 GCCACGTCGCTTTTGTGC 60.726 61.111 0.00 0.00 32.32 4.57
471 472 2.051345 GGCCACGTCGCTTTTGTG 60.051 61.111 4.85 0.00 0.00 3.33
472 473 3.645975 CGGCCACGTCGCTTTTGT 61.646 61.111 4.85 0.00 34.81 2.83
473 474 4.383602 CCGGCCACGTCGCTTTTG 62.384 66.667 4.85 0.00 38.78 2.44
474 475 2.992607 TAACCGGCCACGTCGCTTTT 62.993 55.000 4.85 0.00 38.78 2.27
475 476 3.518419 TAACCGGCCACGTCGCTTT 62.518 57.895 4.85 0.00 38.78 3.51
476 477 3.993584 TAACCGGCCACGTCGCTT 61.994 61.111 4.85 0.00 38.78 4.68
477 478 4.729856 GTAACCGGCCACGTCGCT 62.730 66.667 4.85 0.00 38.78 4.93
501 502 3.950794 TAAGAAGGTGCTGCCGGCG 62.951 63.158 23.90 17.75 45.43 6.46
502 503 1.032114 ATTAAGAAGGTGCTGCCGGC 61.032 55.000 22.73 22.73 43.70 6.13
503 504 1.463674 AATTAAGAAGGTGCTGCCGG 58.536 50.000 0.00 0.00 43.70 6.13
504 505 4.695217 TTTAATTAAGAAGGTGCTGCCG 57.305 40.909 0.00 0.00 43.70 5.69
505 506 5.127031 TCCATTTAATTAAGAAGGTGCTGCC 59.873 40.000 0.00 0.00 37.58 4.85
506 507 6.036470 GTCCATTTAATTAAGAAGGTGCTGC 58.964 40.000 0.00 0.00 0.00 5.25
507 508 7.156876 TGTCCATTTAATTAAGAAGGTGCTG 57.843 36.000 0.00 0.00 0.00 4.41
508 509 6.127619 GCTGTCCATTTAATTAAGAAGGTGCT 60.128 38.462 0.00 0.00 0.00 4.40
509 510 6.036470 GCTGTCCATTTAATTAAGAAGGTGC 58.964 40.000 0.00 5.59 0.00 5.01
510 511 6.152661 TGGCTGTCCATTTAATTAAGAAGGTG 59.847 38.462 0.00 0.00 37.47 4.00
511 512 6.152831 GTGGCTGTCCATTTAATTAAGAAGGT 59.847 38.462 0.00 0.00 45.62 3.50
512 513 6.564328 GTGGCTGTCCATTTAATTAAGAAGG 58.436 40.000 0.00 2.73 45.62 3.46
513 514 6.258160 CGTGGCTGTCCATTTAATTAAGAAG 58.742 40.000 0.00 0.00 45.62 2.85
514 515 5.392595 GCGTGGCTGTCCATTTAATTAAGAA 60.393 40.000 0.00 0.00 45.62 2.52
515 516 4.095782 GCGTGGCTGTCCATTTAATTAAGA 59.904 41.667 0.00 0.00 45.62 2.10
516 517 4.096382 AGCGTGGCTGTCCATTTAATTAAG 59.904 41.667 0.00 0.00 45.62 1.85
517 518 4.013728 AGCGTGGCTGTCCATTTAATTAA 58.986 39.130 0.00 0.00 45.62 1.40
518 519 3.616219 AGCGTGGCTGTCCATTTAATTA 58.384 40.909 0.00 0.00 45.62 1.40
519 520 2.446435 AGCGTGGCTGTCCATTTAATT 58.554 42.857 0.00 0.00 45.62 1.40
520 521 2.128771 AGCGTGGCTGTCCATTTAAT 57.871 45.000 0.00 0.00 45.62 1.40
521 522 1.904287 AAGCGTGGCTGTCCATTTAA 58.096 45.000 0.00 0.00 45.62 1.52
522 523 1.904287 AAAGCGTGGCTGTCCATTTA 58.096 45.000 0.00 0.00 45.62 1.40
523 524 1.539827 GTAAAGCGTGGCTGTCCATTT 59.460 47.619 0.00 0.00 45.62 2.32
524 525 1.165270 GTAAAGCGTGGCTGTCCATT 58.835 50.000 0.00 0.00 45.62 3.16
525 526 0.036164 TGTAAAGCGTGGCTGTCCAT 59.964 50.000 0.00 0.00 45.62 3.41
526 527 0.036164 ATGTAAAGCGTGGCTGTCCA 59.964 50.000 0.00 0.00 39.62 4.02
527 528 0.727398 GATGTAAAGCGTGGCTGTCC 59.273 55.000 0.00 0.00 39.62 4.02
528 529 0.727398 GGATGTAAAGCGTGGCTGTC 59.273 55.000 0.00 0.00 39.62 3.51
529 530 0.676782 GGGATGTAAAGCGTGGCTGT 60.677 55.000 0.00 0.00 39.62 4.40
530 531 1.705337 CGGGATGTAAAGCGTGGCTG 61.705 60.000 0.00 0.00 39.62 4.85
531 532 1.449601 CGGGATGTAAAGCGTGGCT 60.450 57.895 0.00 0.00 42.56 4.75
532 533 1.743995 ACGGGATGTAAAGCGTGGC 60.744 57.895 0.00 0.00 0.00 5.01
533 534 0.672401 ACACGGGATGTAAAGCGTGG 60.672 55.000 0.93 0.00 40.88 4.94
534 535 0.442310 CACACGGGATGTAAAGCGTG 59.558 55.000 0.00 0.00 40.64 5.34
535 536 0.672401 CCACACGGGATGTAAAGCGT 60.672 55.000 0.00 0.00 40.64 5.07
536 537 1.977594 GCCACACGGGATGTAAAGCG 61.978 60.000 0.00 0.00 40.64 4.68
537 538 0.676782 AGCCACACGGGATGTAAAGC 60.677 55.000 0.00 0.00 40.64 3.51
538 539 1.369625 GAGCCACACGGGATGTAAAG 58.630 55.000 0.00 0.00 40.64 1.85
539 540 0.390603 CGAGCCACACGGGATGTAAA 60.391 55.000 0.00 0.00 40.64 2.01
540 541 1.216977 CGAGCCACACGGGATGTAA 59.783 57.895 0.00 0.00 40.64 2.41
541 542 1.980232 ACGAGCCACACGGGATGTA 60.980 57.895 0.00 0.00 40.64 2.29
542 543 3.311110 ACGAGCCACACGGGATGT 61.311 61.111 0.00 0.00 44.81 3.06
543 544 2.815211 CACGAGCCACACGGGATG 60.815 66.667 0.00 0.00 40.01 3.51
544 545 4.082523 CCACGAGCCACACGGGAT 62.083 66.667 0.00 0.00 40.01 3.85
546 547 4.619227 AACCACGAGCCACACGGG 62.619 66.667 0.00 0.00 40.85 5.28
547 548 2.590575 AAACCACGAGCCACACGG 60.591 61.111 0.00 0.00 34.93 4.94
548 549 1.711060 AACAAACCACGAGCCACACG 61.711 55.000 0.00 0.00 0.00 4.49
549 550 0.454196 AAACAAACCACGAGCCACAC 59.546 50.000 0.00 0.00 0.00 3.82
550 551 1.178276 AAAACAAACCACGAGCCACA 58.822 45.000 0.00 0.00 0.00 4.17
551 552 3.368495 CTTAAAACAAACCACGAGCCAC 58.632 45.455 0.00 0.00 0.00 5.01
552 553 2.359531 CCTTAAAACAAACCACGAGCCA 59.640 45.455 0.00 0.00 0.00 4.75
553 554 2.287970 CCCTTAAAACAAACCACGAGCC 60.288 50.000 0.00 0.00 0.00 4.70
554 555 2.359848 ACCCTTAAAACAAACCACGAGC 59.640 45.455 0.00 0.00 0.00 5.03
555 556 4.642445 AACCCTTAAAACAAACCACGAG 57.358 40.909 0.00 0.00 0.00 4.18
556 557 6.712179 ATTAACCCTTAAAACAAACCACGA 57.288 33.333 0.00 0.00 0.00 4.35
557 558 9.131416 GATAATTAACCCTTAAAACAAACCACG 57.869 33.333 0.00 0.00 0.00 4.94
558 559 9.426837 GGATAATTAACCCTTAAAACAAACCAC 57.573 33.333 0.24 0.00 0.00 4.16
565 566 9.938280 AGCAAAAGGATAATTAACCCTTAAAAC 57.062 29.630 17.67 10.81 39.21 2.43
591 592 3.455543 TGAGCACATGGATACCATTGAGA 59.544 43.478 0.00 0.00 42.23 3.27
596 597 3.939740 AACTGAGCACATGGATACCAT 57.060 42.857 0.00 0.00 46.37 3.55
601 602 4.660168 AGAGAAAAACTGAGCACATGGAT 58.340 39.130 0.00 0.00 0.00 3.41
619 621 2.093816 AGCACAATTCGCATCTGAGAGA 60.094 45.455 0.00 0.00 0.00 3.10
621 623 2.274437 GAGCACAATTCGCATCTGAGA 58.726 47.619 0.00 0.00 0.00 3.27
781 783 0.260230 TCTTTGCTGGGTCCCACAAA 59.740 50.000 24.93 24.93 35.24 2.83
867 869 3.616721 ACCGCCGTGCTCTCTGTT 61.617 61.111 0.00 0.00 0.00 3.16
1550 1552 5.419788 TCACATGAAAATTATCTTGCAGCCT 59.580 36.000 0.00 0.00 0.00 4.58
1551 1553 5.653507 TCACATGAAAATTATCTTGCAGCC 58.346 37.500 0.00 0.00 0.00 4.85
1552 1554 5.747197 CCTCACATGAAAATTATCTTGCAGC 59.253 40.000 0.00 0.00 0.00 5.25
1553 1555 5.747197 GCCTCACATGAAAATTATCTTGCAG 59.253 40.000 0.00 0.00 0.00 4.41
1554 1556 5.419788 AGCCTCACATGAAAATTATCTTGCA 59.580 36.000 0.00 0.00 0.00 4.08
1555 1557 5.747197 CAGCCTCACATGAAAATTATCTTGC 59.253 40.000 0.00 0.00 0.00 4.01
1556 1558 5.747197 GCAGCCTCACATGAAAATTATCTTG 59.253 40.000 0.00 0.00 0.00 3.02
1557 1559 5.419788 TGCAGCCTCACATGAAAATTATCTT 59.580 36.000 0.00 0.00 0.00 2.40
1558 1560 4.951715 TGCAGCCTCACATGAAAATTATCT 59.048 37.500 0.00 0.00 0.00 1.98
1559 1561 5.252969 TGCAGCCTCACATGAAAATTATC 57.747 39.130 0.00 0.00 0.00 1.75
1562 1564 3.575256 TCTTGCAGCCTCACATGAAAATT 59.425 39.130 0.00 0.00 0.00 1.82
1563 1565 3.159472 TCTTGCAGCCTCACATGAAAAT 58.841 40.909 0.00 0.00 0.00 1.82
1564 1566 2.585330 TCTTGCAGCCTCACATGAAAA 58.415 42.857 0.00 0.00 0.00 2.29
1565 1567 2.275134 TCTTGCAGCCTCACATGAAA 57.725 45.000 0.00 0.00 0.00 2.69
1566 1568 2.502142 ATCTTGCAGCCTCACATGAA 57.498 45.000 0.00 0.00 0.00 2.57
1567 1569 3.632643 TTATCTTGCAGCCTCACATGA 57.367 42.857 0.00 0.00 0.00 3.07
1568 1570 4.135306 AGATTATCTTGCAGCCTCACATG 58.865 43.478 0.00 0.00 0.00 3.21
1569 1571 4.434545 AGATTATCTTGCAGCCTCACAT 57.565 40.909 0.00 0.00 0.00 3.21
1570 1572 3.920231 AGATTATCTTGCAGCCTCACA 57.080 42.857 0.00 0.00 0.00 3.58
1571 1573 4.548991 CAAGATTATCTTGCAGCCTCAC 57.451 45.455 20.11 0.00 46.03 3.51
2263 2269 1.879575 TCCTTCCCTACCCATGTCAG 58.120 55.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.