Multiple sequence alignment - TraesCS6B01G273800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G273800 chr6B 100.000 2456 0 0 1 2456 494094820 494092365 0.000000e+00 4536.0
1 TraesCS6B01G273800 chr6B 87.800 1000 73 21 924 1900 505908480 505909453 0.000000e+00 1125.0
2 TraesCS6B01G273800 chr6B 84.553 246 16 2 2008 2253 505909489 505909712 8.840000e-55 224.0
3 TraesCS6B01G273800 chr6A 92.200 1577 74 16 905 2450 466088276 466089834 0.000000e+00 2185.0
4 TraesCS6B01G273800 chr6A 88.393 1008 81 22 915 1906 455822289 455821302 0.000000e+00 1181.0
5 TraesCS6B01G273800 chr6A 96.429 140 5 0 327 466 61133794 61133655 5.280000e-57 231.0
6 TraesCS6B01G273800 chr6D 93.619 1238 46 12 822 2046 327343425 327344642 0.000000e+00 1818.0
7 TraesCS6B01G273800 chr6D 95.913 416 16 1 2041 2456 327347822 327348236 0.000000e+00 673.0
8 TraesCS6B01G273800 chr4B 93.171 205 11 1 464 668 40065903 40066104 5.130000e-77 298.0
9 TraesCS6B01G273800 chr5D 92.683 205 12 3 464 668 366007823 366007622 2.390000e-75 292.0
10 TraesCS6B01G273800 chr5D 91.279 172 15 0 118 289 366008080 366007909 4.080000e-58 235.0
11 TraesCS6B01G273800 chr3D 93.782 193 12 0 476 668 8969928 8969736 8.590000e-75 291.0
12 TraesCS6B01G273800 chr3D 91.860 172 14 0 118 289 29699802 29699631 8.780000e-60 241.0
13 TraesCS6B01G273800 chr3D 91.279 172 15 0 118 289 8970194 8970023 4.080000e-58 235.0
14 TraesCS6B01G273800 chr3D 94.000 150 9 0 519 668 29699409 29699260 6.830000e-56 228.0
15 TraesCS6B01G273800 chrUn 91.509 212 14 2 464 674 40598924 40598716 3.090000e-74 289.0
16 TraesCS6B01G273800 chr1B 92.233 206 11 2 464 667 295102950 295103152 1.110000e-73 287.0
17 TraesCS6B01G273800 chr1B 91.720 157 11 2 311 466 319164335 319164490 1.480000e-52 217.0
18 TraesCS6B01G273800 chr1B 91.447 152 11 2 314 464 118169256 118169106 8.900000e-50 207.0
19 TraesCS6B01G273800 chr3B 91.667 204 14 1 464 667 27052256 27052056 1.860000e-71 279.0
20 TraesCS6B01G273800 chr3B 90.698 172 16 0 118 289 27052512 27052341 1.900000e-56 230.0
21 TraesCS6B01G273800 chr4D 90.686 204 16 1 464 667 477012508 477012708 4.030000e-68 268.0
22 TraesCS6B01G273800 chr4D 89.474 171 16 1 118 286 477012330 477012500 5.320000e-52 215.0
23 TraesCS6B01G273800 chr3A 91.860 172 14 0 118 289 383712555 383712384 8.780000e-60 241.0
24 TraesCS6B01G273800 chr2A 91.716 169 14 0 118 286 645956657 645956825 4.080000e-58 235.0
25 TraesCS6B01G273800 chr2A 92.357 157 11 1 311 466 353481686 353481842 3.180000e-54 222.0
26 TraesCS6B01G273800 chr2A 91.613 155 13 0 476 630 645956917 645957071 5.320000e-52 215.0
27 TraesCS6B01G273800 chr2A 91.613 155 9 2 314 464 22583893 22583739 6.880000e-51 211.0
28 TraesCS6B01G273800 chr7D 95.652 138 6 0 328 465 625509230 625509093 3.180000e-54 222.0
29 TraesCS6B01G273800 chr7D 93.750 144 8 1 327 469 575765426 575765283 5.320000e-52 215.0
30 TraesCS6B01G273800 chr7B 92.667 150 9 2 327 474 394335634 394335485 5.320000e-52 215.0
31 TraesCS6B01G273800 chr5A 94.286 140 8 0 330 469 21696366 21696505 5.320000e-52 215.0
32 TraesCS6B01G273800 chr4A 100.000 29 0 0 681 709 744008370 744008398 1.000000e-03 54.7
33 TraesCS6B01G273800 chr1A 90.476 42 1 2 680 718 6018960 6018919 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G273800 chr6B 494092365 494094820 2455 True 4536.0 4536 100.0000 1 2456 1 chr6B.!!$R1 2455
1 TraesCS6B01G273800 chr6B 505908480 505909712 1232 False 674.5 1125 86.1765 924 2253 2 chr6B.!!$F1 1329
2 TraesCS6B01G273800 chr6A 466088276 466089834 1558 False 2185.0 2185 92.2000 905 2450 1 chr6A.!!$F1 1545
3 TraesCS6B01G273800 chr6A 455821302 455822289 987 True 1181.0 1181 88.3930 915 1906 1 chr6A.!!$R2 991
4 TraesCS6B01G273800 chr6D 327343425 327348236 4811 False 1245.5 1818 94.7660 822 2456 2 chr6D.!!$F1 1634
5 TraesCS6B01G273800 chr3D 29699260 29699802 542 True 234.5 241 92.9300 118 668 2 chr3D.!!$R2 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.031817 CCAATTCCAGCCCCCAATCT 60.032 55.0 0.0 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1665 0.605589 CTCACAAGAACCGCTCTCCT 59.394 55.0 0.0 0.0 31.02 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.797074 TTTGTGTGTCCGTATCACGA 57.203 45.000 0.00 0.00 46.05 4.35
21 22 2.341318 TTGTGTGTCCGTATCACGAG 57.659 50.000 0.00 0.00 46.05 4.18
22 23 1.241165 TGTGTGTCCGTATCACGAGT 58.759 50.000 0.00 0.00 46.05 4.18
23 24 2.425539 TGTGTGTCCGTATCACGAGTA 58.574 47.619 0.00 0.00 46.05 2.59
24 25 2.160219 TGTGTGTCCGTATCACGAGTAC 59.840 50.000 0.00 0.00 46.05 2.73
25 26 1.739466 TGTGTCCGTATCACGAGTACC 59.261 52.381 0.00 0.00 46.05 3.34
26 27 1.739466 GTGTCCGTATCACGAGTACCA 59.261 52.381 0.00 0.00 46.05 3.25
27 28 2.162208 GTGTCCGTATCACGAGTACCAA 59.838 50.000 0.00 0.00 46.05 3.67
28 29 3.018856 TGTCCGTATCACGAGTACCAAT 58.981 45.455 0.00 0.00 46.05 3.16
29 30 3.444742 TGTCCGTATCACGAGTACCAATT 59.555 43.478 0.00 0.00 46.05 2.32
30 31 4.040376 GTCCGTATCACGAGTACCAATTC 58.960 47.826 0.00 0.00 46.05 2.17
31 32 3.067180 TCCGTATCACGAGTACCAATTCC 59.933 47.826 0.00 0.00 46.05 3.01
32 33 3.181484 CCGTATCACGAGTACCAATTCCA 60.181 47.826 0.00 0.00 46.05 3.53
33 34 4.042398 CGTATCACGAGTACCAATTCCAG 58.958 47.826 0.00 0.00 46.05 3.86
34 35 2.380084 TCACGAGTACCAATTCCAGC 57.620 50.000 0.00 0.00 0.00 4.85
35 36 1.066430 TCACGAGTACCAATTCCAGCC 60.066 52.381 0.00 0.00 0.00 4.85
36 37 0.252197 ACGAGTACCAATTCCAGCCC 59.748 55.000 0.00 0.00 0.00 5.19
37 38 0.463833 CGAGTACCAATTCCAGCCCC 60.464 60.000 0.00 0.00 0.00 5.80
38 39 0.106669 GAGTACCAATTCCAGCCCCC 60.107 60.000 0.00 0.00 0.00 5.40
39 40 0.849094 AGTACCAATTCCAGCCCCCA 60.849 55.000 0.00 0.00 0.00 4.96
40 41 0.040499 GTACCAATTCCAGCCCCCAA 59.960 55.000 0.00 0.00 0.00 4.12
41 42 1.014804 TACCAATTCCAGCCCCCAAT 58.985 50.000 0.00 0.00 0.00 3.16
42 43 0.325577 ACCAATTCCAGCCCCCAATC 60.326 55.000 0.00 0.00 0.00 2.67
43 44 0.031817 CCAATTCCAGCCCCCAATCT 60.032 55.000 0.00 0.00 0.00 2.40
44 45 1.117150 CAATTCCAGCCCCCAATCTG 58.883 55.000 0.00 0.00 0.00 2.90
45 46 1.009997 AATTCCAGCCCCCAATCTGA 58.990 50.000 0.00 0.00 32.26 3.27
46 47 1.238615 ATTCCAGCCCCCAATCTGAT 58.761 50.000 0.00 0.00 32.26 2.90
47 48 1.009997 TTCCAGCCCCCAATCTGATT 58.990 50.000 0.00 0.00 32.26 2.57
48 49 0.259647 TCCAGCCCCCAATCTGATTG 59.740 55.000 20.79 20.79 39.94 2.67
49 50 0.032813 CCAGCCCCCAATCTGATTGT 60.033 55.000 24.38 7.05 38.59 2.71
50 51 1.620524 CCAGCCCCCAATCTGATTGTT 60.621 52.381 24.38 6.30 38.59 2.83
51 52 1.753073 CAGCCCCCAATCTGATTGTTC 59.247 52.381 24.38 12.62 38.59 3.18
52 53 0.740737 GCCCCCAATCTGATTGTTCG 59.259 55.000 24.38 13.90 38.59 3.95
53 54 1.392589 CCCCCAATCTGATTGTTCGG 58.607 55.000 24.38 18.85 38.59 4.30
54 55 1.340991 CCCCCAATCTGATTGTTCGGT 60.341 52.381 24.38 0.00 38.59 4.69
55 56 2.446435 CCCCAATCTGATTGTTCGGTT 58.554 47.619 24.38 0.00 38.59 4.44
56 57 2.825532 CCCCAATCTGATTGTTCGGTTT 59.174 45.455 24.38 0.00 38.59 3.27
57 58 3.367292 CCCCAATCTGATTGTTCGGTTTG 60.367 47.826 24.38 9.87 38.59 2.93
58 59 3.255642 CCCAATCTGATTGTTCGGTTTGT 59.744 43.478 24.38 0.00 36.69 2.83
59 60 4.457603 CCCAATCTGATTGTTCGGTTTGTA 59.542 41.667 24.38 0.00 36.69 2.41
60 61 5.048364 CCCAATCTGATTGTTCGGTTTGTAA 60.048 40.000 24.38 0.00 36.69 2.41
61 62 6.350110 CCCAATCTGATTGTTCGGTTTGTAAT 60.350 38.462 24.38 0.00 36.69 1.89
62 63 7.090173 CCAATCTGATTGTTCGGTTTGTAATT 58.910 34.615 24.38 0.00 36.69 1.40
63 64 7.598493 CCAATCTGATTGTTCGGTTTGTAATTT 59.402 33.333 24.38 0.00 36.69 1.82
64 65 8.977505 CAATCTGATTGTTCGGTTTGTAATTTT 58.022 29.630 19.74 0.00 34.96 1.82
65 66 7.922505 TCTGATTGTTCGGTTTGTAATTTTG 57.077 32.000 0.00 0.00 0.00 2.44
66 67 6.920758 TCTGATTGTTCGGTTTGTAATTTTGG 59.079 34.615 0.00 0.00 0.00 3.28
67 68 6.806751 TGATTGTTCGGTTTGTAATTTTGGA 58.193 32.000 0.00 0.00 0.00 3.53
68 69 6.920758 TGATTGTTCGGTTTGTAATTTTGGAG 59.079 34.615 0.00 0.00 0.00 3.86
69 70 6.452494 TTGTTCGGTTTGTAATTTTGGAGA 57.548 33.333 0.00 0.00 0.00 3.71
70 71 5.823353 TGTTCGGTTTGTAATTTTGGAGAC 58.177 37.500 0.00 0.00 0.00 3.36
71 72 5.217393 GTTCGGTTTGTAATTTTGGAGACC 58.783 41.667 0.00 0.00 0.00 3.85
72 73 3.817238 CGGTTTGTAATTTTGGAGACCG 58.183 45.455 0.00 0.00 42.08 4.79
74 75 5.441709 GGTTTGTAATTTTGGAGACCGAA 57.558 39.130 0.00 0.00 0.00 4.30
75 76 6.020971 GGTTTGTAATTTTGGAGACCGAAT 57.979 37.500 0.00 0.00 0.00 3.34
76 77 5.861787 GGTTTGTAATTTTGGAGACCGAATG 59.138 40.000 0.00 0.00 0.00 2.67
77 78 4.695217 TGTAATTTTGGAGACCGAATGC 57.305 40.909 0.00 0.00 0.00 3.56
78 79 4.331968 TGTAATTTTGGAGACCGAATGCT 58.668 39.130 0.00 0.00 0.00 3.79
79 80 4.764823 TGTAATTTTGGAGACCGAATGCTT 59.235 37.500 0.00 0.00 0.00 3.91
80 81 3.855689 ATTTTGGAGACCGAATGCTTG 57.144 42.857 0.00 0.00 0.00 4.01
81 82 0.881118 TTTGGAGACCGAATGCTTGC 59.119 50.000 0.00 0.00 0.00 4.01
82 83 0.250684 TTGGAGACCGAATGCTTGCA 60.251 50.000 0.00 0.00 0.00 4.08
83 84 0.955428 TGGAGACCGAATGCTTGCAC 60.955 55.000 0.00 0.00 0.00 4.57
84 85 0.674895 GGAGACCGAATGCTTGCACT 60.675 55.000 0.00 0.00 0.00 4.40
85 86 1.405526 GGAGACCGAATGCTTGCACTA 60.406 52.381 0.00 0.00 0.00 2.74
86 87 1.929836 GAGACCGAATGCTTGCACTAG 59.070 52.381 0.00 0.00 0.00 2.57
87 88 1.276421 AGACCGAATGCTTGCACTAGT 59.724 47.619 0.00 0.00 0.00 2.57
88 89 2.496070 AGACCGAATGCTTGCACTAGTA 59.504 45.455 0.00 0.00 0.00 1.82
89 90 3.133003 AGACCGAATGCTTGCACTAGTAT 59.867 43.478 0.00 0.00 0.00 2.12
90 91 3.198068 ACCGAATGCTTGCACTAGTATG 58.802 45.455 0.00 0.00 0.00 2.39
91 92 2.032549 CCGAATGCTTGCACTAGTATGC 60.033 50.000 0.00 0.00 46.32 3.14
92 93 2.868583 CGAATGCTTGCACTAGTATGCT 59.131 45.455 6.85 0.00 46.28 3.79
93 94 4.051237 CGAATGCTTGCACTAGTATGCTA 58.949 43.478 6.85 0.00 46.28 3.49
94 95 4.687948 CGAATGCTTGCACTAGTATGCTAT 59.312 41.667 6.85 0.00 46.28 2.97
95 96 5.178252 CGAATGCTTGCACTAGTATGCTATT 59.822 40.000 6.85 4.69 46.28 1.73
96 97 5.936686 ATGCTTGCACTAGTATGCTATTG 57.063 39.130 6.85 4.15 46.28 1.90
97 98 5.022282 TGCTTGCACTAGTATGCTATTGA 57.978 39.130 11.54 0.00 46.28 2.57
98 99 5.052481 TGCTTGCACTAGTATGCTATTGAG 58.948 41.667 11.54 3.29 46.28 3.02
99 100 5.053145 GCTTGCACTAGTATGCTATTGAGT 58.947 41.667 11.54 0.00 46.28 3.41
100 101 6.183360 TGCTTGCACTAGTATGCTATTGAGTA 60.183 38.462 11.54 0.00 46.28 2.59
101 102 6.870965 GCTTGCACTAGTATGCTATTGAGTAT 59.129 38.462 11.54 0.00 46.28 2.12
102 103 7.386299 GCTTGCACTAGTATGCTATTGAGTATT 59.614 37.037 11.54 0.00 46.28 1.89
103 104 8.593492 TTGCACTAGTATGCTATTGAGTATTG 57.407 34.615 11.54 0.00 46.28 1.90
104 105 6.646653 TGCACTAGTATGCTATTGAGTATTGC 59.353 38.462 11.54 0.00 46.28 3.56
105 106 6.870965 GCACTAGTATGCTATTGAGTATTGCT 59.129 38.462 11.54 0.00 42.62 3.91
106 107 7.148672 GCACTAGTATGCTATTGAGTATTGCTG 60.149 40.741 11.54 0.00 42.62 4.41
107 108 7.869937 CACTAGTATGCTATTGAGTATTGCTGT 59.130 37.037 2.53 0.00 36.19 4.40
108 109 8.085296 ACTAGTATGCTATTGAGTATTGCTGTC 58.915 37.037 0.00 0.00 36.19 3.51
109 110 6.226787 AGTATGCTATTGAGTATTGCTGTCC 58.773 40.000 0.00 0.00 36.19 4.02
110 111 4.486125 TGCTATTGAGTATTGCTGTCCA 57.514 40.909 0.00 0.00 36.19 4.02
111 112 4.842574 TGCTATTGAGTATTGCTGTCCAA 58.157 39.130 0.00 0.00 36.19 3.53
112 113 5.252547 TGCTATTGAGTATTGCTGTCCAAA 58.747 37.500 0.00 0.00 36.92 3.28
113 114 5.709631 TGCTATTGAGTATTGCTGTCCAAAA 59.290 36.000 0.00 0.00 36.92 2.44
114 115 6.208402 TGCTATTGAGTATTGCTGTCCAAAAA 59.792 34.615 0.00 0.00 36.92 1.94
146 147 6.127083 TGCTATTGTGTATTCAGACTCCATGA 60.127 38.462 0.00 0.00 0.00 3.07
154 155 3.876274 TCAGACTCCATGAACTAGCAC 57.124 47.619 0.00 0.00 0.00 4.40
174 175 9.651913 CTAGCACCCAATTTGTATTTTAATTGT 57.348 29.630 0.00 0.00 39.14 2.71
186 187 6.884295 TGTATTTTAATTGTCTGCACTAGCCT 59.116 34.615 0.00 0.00 41.13 4.58
189 190 3.981071 AATTGTCTGCACTAGCCTGTA 57.019 42.857 0.00 0.00 41.13 2.74
191 192 5.614324 AATTGTCTGCACTAGCCTGTATA 57.386 39.130 0.00 0.00 41.13 1.47
192 193 4.386867 TTGTCTGCACTAGCCTGTATAC 57.613 45.455 0.00 0.00 41.13 1.47
194 195 3.632604 TGTCTGCACTAGCCTGTATACTC 59.367 47.826 4.17 0.00 41.13 2.59
236 237 2.301870 AGTTGCTCGGTTCATACTCCAA 59.698 45.455 0.00 0.00 0.00 3.53
275 276 5.785423 ACTATGCTGGCAGGGTCTATATTTA 59.215 40.000 17.64 0.00 0.00 1.40
278 279 4.165180 TGCTGGCAGGGTCTATATTTACAA 59.835 41.667 17.64 0.00 0.00 2.41
304 305 9.871238 ATTTGTATGTATTATAGGATCGTGACC 57.129 33.333 0.00 0.00 0.00 4.02
305 306 7.400599 TGTATGTATTATAGGATCGTGACCC 57.599 40.000 0.00 0.00 0.00 4.46
307 308 7.672660 TGTATGTATTATAGGATCGTGACCCTT 59.327 37.037 0.00 0.00 34.11 3.95
309 310 7.369551 TGTATTATAGGATCGTGACCCTTTT 57.630 36.000 0.00 0.00 34.11 2.27
310 311 7.798071 TGTATTATAGGATCGTGACCCTTTTT 58.202 34.615 0.00 0.00 34.11 1.94
326 327 2.741122 TTTTTGCACAAGACGTACGG 57.259 45.000 21.06 3.79 0.00 4.02
328 329 1.210870 TTTGCACAAGACGTACGGAC 58.789 50.000 21.06 13.04 0.00 4.79
329 330 0.598158 TTGCACAAGACGTACGGACC 60.598 55.000 21.06 8.29 0.00 4.46
330 331 1.735559 GCACAAGACGTACGGACCC 60.736 63.158 21.06 5.70 0.00 4.46
331 332 1.080298 CACAAGACGTACGGACCCC 60.080 63.158 21.06 3.17 0.00 4.95
333 334 1.114722 ACAAGACGTACGGACCCCAA 61.115 55.000 21.06 0.00 0.00 4.12
334 335 0.033781 CAAGACGTACGGACCCCAAA 59.966 55.000 21.06 0.00 0.00 3.28
335 336 0.978907 AAGACGTACGGACCCCAAAT 59.021 50.000 21.06 0.00 0.00 2.32
337 338 2.178580 AGACGTACGGACCCCAAATTA 58.821 47.619 21.06 0.00 0.00 1.40
338 339 2.167075 AGACGTACGGACCCCAAATTAG 59.833 50.000 21.06 0.00 0.00 1.73
341 342 3.706086 ACGTACGGACCCCAAATTAGTAT 59.294 43.478 21.06 0.00 0.00 2.12
342 343 4.202151 ACGTACGGACCCCAAATTAGTATC 60.202 45.833 21.06 0.00 0.00 2.24
343 344 4.202141 CGTACGGACCCCAAATTAGTATCA 60.202 45.833 7.57 0.00 0.00 2.15
344 345 4.146745 ACGGACCCCAAATTAGTATCAC 57.853 45.455 0.00 0.00 0.00 3.06
347 348 4.715713 GGACCCCAAATTAGTATCACCTC 58.284 47.826 0.00 0.00 0.00 3.85
348 349 4.377897 GACCCCAAATTAGTATCACCTCG 58.622 47.826 0.00 0.00 0.00 4.63
350 351 4.226620 ACCCCAAATTAGTATCACCTCGTT 59.773 41.667 0.00 0.00 0.00 3.85
352 353 5.065988 CCCCAAATTAGTATCACCTCGTTTG 59.934 44.000 0.00 0.00 0.00 2.93
354 355 6.819649 CCCAAATTAGTATCACCTCGTTTGTA 59.180 38.462 0.00 0.00 0.00 2.41
356 357 8.889717 CCAAATTAGTATCACCTCGTTTGTATT 58.110 33.333 0.00 0.00 0.00 1.89
359 360 8.792831 ATTAGTATCACCTCGTTTGTATTACG 57.207 34.615 0.00 0.00 40.23 3.18
361 362 7.035840 AGTATCACCTCGTTTGTATTACGAT 57.964 36.000 0.00 0.00 45.76 3.73
362 363 7.486647 AGTATCACCTCGTTTGTATTACGATT 58.513 34.615 0.00 0.00 45.76 3.34
363 364 7.977853 AGTATCACCTCGTTTGTATTACGATTT 59.022 33.333 0.00 0.00 45.76 2.17
364 365 7.605410 ATCACCTCGTTTGTATTACGATTTT 57.395 32.000 0.00 0.00 45.76 1.82
366 367 6.424509 TCACCTCGTTTGTATTACGATTTTGT 59.575 34.615 0.00 0.00 45.76 2.83
367 368 6.735063 CACCTCGTTTGTATTACGATTTTGTC 59.265 38.462 0.00 0.00 45.76 3.18
368 369 6.128472 ACCTCGTTTGTATTACGATTTTGTCC 60.128 38.462 0.00 0.00 45.76 4.02
404 405 9.764363 ATAAAAGCGTATTATGACATGAGAAGA 57.236 29.630 0.00 0.00 0.00 2.87
405 406 8.492673 AAAAGCGTATTATGACATGAGAAGAA 57.507 30.769 0.00 0.00 0.00 2.52
406 407 8.492673 AAAGCGTATTATGACATGAGAAGAAA 57.507 30.769 0.00 0.00 0.00 2.52
407 408 7.706281 AGCGTATTATGACATGAGAAGAAAG 57.294 36.000 0.00 0.00 0.00 2.62
408 409 6.201806 AGCGTATTATGACATGAGAAGAAAGC 59.798 38.462 0.00 0.00 0.00 3.51
409 410 6.576021 CGTATTATGACATGAGAAGAAAGCG 58.424 40.000 0.00 0.00 0.00 4.68
410 411 6.199154 CGTATTATGACATGAGAAGAAAGCGT 59.801 38.462 0.00 0.00 0.00 5.07
411 412 7.378728 CGTATTATGACATGAGAAGAAAGCGTA 59.621 37.037 0.00 0.00 0.00 4.42
412 413 9.197694 GTATTATGACATGAGAAGAAAGCGTAT 57.802 33.333 0.00 0.00 0.00 3.06
413 414 8.668510 ATTATGACATGAGAAGAAAGCGTATT 57.331 30.769 0.00 0.00 0.00 1.89
414 415 5.784750 TGACATGAGAAGAAAGCGTATTG 57.215 39.130 0.00 0.00 0.00 1.90
415 416 4.093408 TGACATGAGAAGAAAGCGTATTGC 59.907 41.667 0.00 0.00 46.98 3.56
424 425 3.465753 GCGTATTGCGACGGTGAA 58.534 55.556 0.00 0.00 44.77 3.18
425 426 1.058284 GCGTATTGCGACGGTGAAC 59.942 57.895 0.00 0.00 44.77 3.18
426 427 1.705727 CGTATTGCGACGGTGAACC 59.294 57.895 0.00 0.00 44.77 3.62
427 428 1.689352 CGTATTGCGACGGTGAACCC 61.689 60.000 0.00 0.00 44.77 4.11
437 438 3.390003 GGTGAACCCGACAAAGTCA 57.610 52.632 0.00 0.00 32.09 3.41
438 439 1.670791 GGTGAACCCGACAAAGTCAA 58.329 50.000 0.00 0.00 32.09 3.18
439 440 2.227194 GGTGAACCCGACAAAGTCAAT 58.773 47.619 0.00 0.00 32.09 2.57
440 441 2.225727 GGTGAACCCGACAAAGTCAATC 59.774 50.000 0.00 0.00 32.09 2.67
441 442 2.225727 GTGAACCCGACAAAGTCAATCC 59.774 50.000 0.00 0.00 32.09 3.01
442 443 1.463444 GAACCCGACAAAGTCAATCCG 59.537 52.381 0.00 0.00 32.09 4.18
443 444 0.395312 ACCCGACAAAGTCAATCCGT 59.605 50.000 0.00 0.00 32.09 4.69
444 445 0.796312 CCCGACAAAGTCAATCCGTG 59.204 55.000 0.00 0.00 32.09 4.94
445 446 0.165944 CCGACAAAGTCAATCCGTGC 59.834 55.000 0.00 0.00 32.09 5.34
446 447 1.148310 CGACAAAGTCAATCCGTGCT 58.852 50.000 0.00 0.00 32.09 4.40
447 448 1.531149 CGACAAAGTCAATCCGTGCTT 59.469 47.619 0.00 0.00 32.09 3.91
448 449 2.032030 CGACAAAGTCAATCCGTGCTTT 60.032 45.455 0.00 0.00 35.37 3.51
449 450 3.185594 CGACAAAGTCAATCCGTGCTTTA 59.814 43.478 0.00 0.00 34.13 1.85
450 451 4.142902 CGACAAAGTCAATCCGTGCTTTAT 60.143 41.667 0.00 0.00 34.13 1.40
451 452 5.616866 CGACAAAGTCAATCCGTGCTTTATT 60.617 40.000 0.00 0.00 34.13 1.40
452 453 6.401688 CGACAAAGTCAATCCGTGCTTTATTA 60.402 38.462 0.00 0.00 34.13 0.98
453 454 7.391148 ACAAAGTCAATCCGTGCTTTATTAT 57.609 32.000 0.00 0.00 34.13 1.28
454 455 7.826690 ACAAAGTCAATCCGTGCTTTATTATT 58.173 30.769 0.00 0.00 34.13 1.40
455 456 8.952278 ACAAAGTCAATCCGTGCTTTATTATTA 58.048 29.630 0.00 0.00 34.13 0.98
456 457 9.438291 CAAAGTCAATCCGTGCTTTATTATTAG 57.562 33.333 0.00 0.00 34.13 1.73
457 458 7.730364 AGTCAATCCGTGCTTTATTATTAGG 57.270 36.000 0.00 0.00 0.00 2.69
458 459 6.710744 AGTCAATCCGTGCTTTATTATTAGGG 59.289 38.462 0.00 0.00 0.00 3.53
459 460 6.708949 GTCAATCCGTGCTTTATTATTAGGGA 59.291 38.462 0.00 0.00 0.00 4.20
460 461 6.934645 TCAATCCGTGCTTTATTATTAGGGAG 59.065 38.462 0.00 0.00 0.00 4.30
461 462 6.681729 ATCCGTGCTTTATTATTAGGGAGA 57.318 37.500 0.00 0.00 0.00 3.71
462 463 6.097915 TCCGTGCTTTATTATTAGGGAGAG 57.902 41.667 0.00 0.00 0.00 3.20
463 464 5.836898 TCCGTGCTTTATTATTAGGGAGAGA 59.163 40.000 0.00 0.00 0.00 3.10
538 622 4.105217 TCCTATCTGTGTTCCTATCCCGTA 59.895 45.833 0.00 0.00 0.00 4.02
554 638 5.793030 TCCCGTAAACCAAATGACATTTT 57.207 34.783 10.77 0.00 0.00 1.82
559 643 7.201652 CCCGTAAACCAAATGACATTTTGTTTT 60.202 33.333 31.63 22.03 42.09 2.43
583 667 9.770097 TTTCTATTCCTATAGTCTGAGCATTTG 57.230 33.333 0.00 0.00 36.06 2.32
624 708 6.252995 TGCCACCTCATTTCCTATACTTTTT 58.747 36.000 0.00 0.00 0.00 1.94
668 752 4.726825 TCTTATGAACCAAAGGAGGCCTAT 59.273 41.667 4.42 0.00 31.13 2.57
669 753 5.908831 TCTTATGAACCAAAGGAGGCCTATA 59.091 40.000 4.42 0.00 31.13 1.31
670 754 3.926058 TGAACCAAAGGAGGCCTATAC 57.074 47.619 4.42 0.00 31.13 1.47
671 755 3.460825 TGAACCAAAGGAGGCCTATACT 58.539 45.455 4.42 0.71 31.13 2.12
672 756 4.627015 TGAACCAAAGGAGGCCTATACTA 58.373 43.478 4.42 0.00 31.13 1.82
673 757 5.224441 TGAACCAAAGGAGGCCTATACTAT 58.776 41.667 4.42 0.00 31.13 2.12
674 758 6.387127 TGAACCAAAGGAGGCCTATACTATA 58.613 40.000 4.42 0.00 31.13 1.31
675 759 6.497259 TGAACCAAAGGAGGCCTATACTATAG 59.503 42.308 4.42 0.00 31.13 1.31
676 760 5.342866 ACCAAAGGAGGCCTATACTATAGG 58.657 45.833 4.42 15.57 37.75 2.57
677 761 5.162749 ACCAAAGGAGGCCTATACTATAGGT 60.163 44.000 19.43 10.43 37.06 3.08
678 762 6.047599 ACCAAAGGAGGCCTATACTATAGGTA 59.952 42.308 19.43 0.00 37.06 3.08
679 763 6.380560 CCAAAGGAGGCCTATACTATAGGTAC 59.619 46.154 19.43 14.06 37.06 3.34
680 764 5.730633 AGGAGGCCTATACTATAGGTACC 57.269 47.826 19.43 18.21 37.06 3.34
681 765 4.481652 AGGAGGCCTATACTATAGGTACCC 59.518 50.000 19.43 16.70 37.06 3.69
682 766 4.459330 GAGGCCTATACTATAGGTACCCG 58.541 52.174 19.43 0.00 37.06 5.28
683 767 2.954989 GGCCTATACTATAGGTACCCGC 59.045 54.545 19.43 7.34 37.06 6.13
684 768 3.624777 GCCTATACTATAGGTACCCGCA 58.375 50.000 19.43 0.00 37.06 5.69
685 769 3.631227 GCCTATACTATAGGTACCCGCAG 59.369 52.174 19.43 5.48 37.06 5.18
686 770 3.631227 CCTATACTATAGGTACCCGCAGC 59.369 52.174 8.74 0.00 32.72 5.25
687 771 2.662535 TACTATAGGTACCCGCAGCA 57.337 50.000 8.74 0.00 0.00 4.41
688 772 1.329256 ACTATAGGTACCCGCAGCAG 58.671 55.000 8.74 0.21 0.00 4.24
689 773 0.038159 CTATAGGTACCCGCAGCAGC 60.038 60.000 8.74 0.00 37.42 5.25
703 787 4.969196 CAGCGCGCGGGGTATCAT 62.969 66.667 33.06 0.57 0.00 2.45
704 788 4.664677 AGCGCGCGGGGTATCATC 62.665 66.667 33.06 11.27 0.00 2.92
705 789 4.664677 GCGCGCGGGGTATCATCT 62.665 66.667 33.06 0.00 0.00 2.90
706 790 2.959372 CGCGCGGGGTATCATCTA 59.041 61.111 24.84 0.00 0.00 1.98
707 791 1.154016 CGCGCGGGGTATCATCTAG 60.154 63.158 24.84 0.00 0.00 2.43
708 792 1.863662 CGCGCGGGGTATCATCTAGT 61.864 60.000 24.84 0.00 0.00 2.57
709 793 0.317479 GCGCGGGGTATCATCTAGTT 59.683 55.000 8.83 0.00 0.00 2.24
710 794 1.270147 GCGCGGGGTATCATCTAGTTT 60.270 52.381 8.83 0.00 0.00 2.66
711 795 2.673833 CGCGGGGTATCATCTAGTTTC 58.326 52.381 0.00 0.00 0.00 2.78
712 796 2.296471 CGCGGGGTATCATCTAGTTTCT 59.704 50.000 0.00 0.00 0.00 2.52
713 797 3.504906 CGCGGGGTATCATCTAGTTTCTA 59.495 47.826 0.00 0.00 0.00 2.10
714 798 4.022589 CGCGGGGTATCATCTAGTTTCTAA 60.023 45.833 0.00 0.00 0.00 2.10
715 799 5.508489 CGCGGGGTATCATCTAGTTTCTAAA 60.508 44.000 0.00 0.00 0.00 1.85
716 800 6.285990 GCGGGGTATCATCTAGTTTCTAAAA 58.714 40.000 0.00 0.00 0.00 1.52
717 801 6.935208 GCGGGGTATCATCTAGTTTCTAAAAT 59.065 38.462 0.00 0.00 0.00 1.82
718 802 7.444487 GCGGGGTATCATCTAGTTTCTAAAATT 59.556 37.037 0.00 0.00 0.00 1.82
719 803 9.338622 CGGGGTATCATCTAGTTTCTAAAATTT 57.661 33.333 0.00 0.00 0.00 1.82
723 807 9.865484 GTATCATCTAGTTTCTAAAATTTCGGC 57.135 33.333 0.00 0.00 0.00 5.54
724 808 8.738645 ATCATCTAGTTTCTAAAATTTCGGCT 57.261 30.769 0.00 0.00 0.00 5.52
725 809 7.974675 TCATCTAGTTTCTAAAATTTCGGCTG 58.025 34.615 0.00 0.00 0.00 4.85
726 810 6.178239 TCTAGTTTCTAAAATTTCGGCTGC 57.822 37.500 0.00 0.00 0.00 5.25
727 811 4.174411 AGTTTCTAAAATTTCGGCTGCC 57.826 40.909 9.11 9.11 0.00 4.85
728 812 3.056821 AGTTTCTAAAATTTCGGCTGCCC 60.057 43.478 14.12 0.00 0.00 5.36
729 813 1.470051 TCTAAAATTTCGGCTGCCCC 58.530 50.000 14.12 0.00 0.00 5.80
739 823 4.643387 GCTGCCCCGTCACCAGTT 62.643 66.667 0.00 0.00 0.00 3.16
740 824 2.113139 CTGCCCCGTCACCAGTTT 59.887 61.111 0.00 0.00 0.00 2.66
741 825 1.966451 CTGCCCCGTCACCAGTTTC 60.966 63.158 0.00 0.00 0.00 2.78
742 826 2.397413 CTGCCCCGTCACCAGTTTCT 62.397 60.000 0.00 0.00 0.00 2.52
743 827 1.228154 GCCCCGTCACCAGTTTCTT 60.228 57.895 0.00 0.00 0.00 2.52
744 828 0.035739 GCCCCGTCACCAGTTTCTTA 59.964 55.000 0.00 0.00 0.00 2.10
745 829 1.543871 GCCCCGTCACCAGTTTCTTAA 60.544 52.381 0.00 0.00 0.00 1.85
746 830 2.878526 GCCCCGTCACCAGTTTCTTAAT 60.879 50.000 0.00 0.00 0.00 1.40
747 831 3.418047 CCCCGTCACCAGTTTCTTAATT 58.582 45.455 0.00 0.00 0.00 1.40
748 832 4.581868 CCCCGTCACCAGTTTCTTAATTA 58.418 43.478 0.00 0.00 0.00 1.40
749 833 4.393990 CCCCGTCACCAGTTTCTTAATTAC 59.606 45.833 0.00 0.00 0.00 1.89
750 834 5.243207 CCCGTCACCAGTTTCTTAATTACT 58.757 41.667 0.00 0.00 0.00 2.24
751 835 5.121768 CCCGTCACCAGTTTCTTAATTACTG 59.878 44.000 0.00 0.00 39.13 2.74
801 885 3.087253 CGTAGGTGGGATGGGCCA 61.087 66.667 9.61 9.61 38.95 5.36
802 886 2.675242 CGTAGGTGGGATGGGCCAA 61.675 63.158 11.89 0.00 38.95 4.52
803 887 1.227383 GTAGGTGGGATGGGCCAAG 59.773 63.158 11.89 0.00 38.95 3.61
804 888 1.083895 TAGGTGGGATGGGCCAAGA 59.916 57.895 11.89 0.00 38.95 3.02
805 889 1.279025 TAGGTGGGATGGGCCAAGAC 61.279 60.000 11.89 5.15 38.95 3.01
806 890 2.616458 GGTGGGATGGGCCAAGACT 61.616 63.158 11.89 0.00 38.95 3.24
807 891 1.379044 GTGGGATGGGCCAAGACTG 60.379 63.158 11.89 0.00 38.95 3.51
808 892 2.440980 GGGATGGGCCAAGACTGC 60.441 66.667 11.89 0.00 38.95 4.40
809 893 2.679716 GGATGGGCCAAGACTGCT 59.320 61.111 11.89 0.00 36.34 4.24
810 894 1.452833 GGATGGGCCAAGACTGCTC 60.453 63.158 11.89 0.35 36.34 4.26
811 895 1.452833 GATGGGCCAAGACTGCTCC 60.453 63.158 11.89 0.00 0.00 4.70
812 896 3.335356 ATGGGCCAAGACTGCTCCG 62.335 63.158 11.89 0.00 0.00 4.63
813 897 4.785453 GGGCCAAGACTGCTCCGG 62.785 72.222 4.39 0.00 0.00 5.14
814 898 4.785453 GGCCAAGACTGCTCCGGG 62.785 72.222 0.00 0.00 0.00 5.73
815 899 4.021925 GCCAAGACTGCTCCGGGT 62.022 66.667 0.00 0.00 0.00 5.28
816 900 2.750350 CCAAGACTGCTCCGGGTT 59.250 61.111 0.00 0.00 0.00 4.11
817 901 1.980052 CCAAGACTGCTCCGGGTTA 59.020 57.895 0.00 0.00 0.00 2.85
818 902 0.323629 CCAAGACTGCTCCGGGTTAA 59.676 55.000 0.00 0.00 0.00 2.01
819 903 1.439679 CAAGACTGCTCCGGGTTAAC 58.560 55.000 0.00 0.00 0.00 2.01
820 904 1.053424 AAGACTGCTCCGGGTTAACA 58.947 50.000 8.10 0.00 0.00 2.41
869 953 1.658994 TTCGGCCCATACGATTTGAC 58.341 50.000 0.00 0.00 40.38 3.18
974 1063 1.228003 CCCGTAACTGCCACCAACA 60.228 57.895 0.00 0.00 0.00 3.33
1563 1665 6.420913 ACTCTAGTTAGTTTTCTTGGCTCA 57.579 37.500 0.00 0.00 0.00 4.26
1611 1722 4.508124 GTCTGCTACATGGTTGTGTATAGC 59.492 45.833 0.00 0.00 36.53 2.97
1644 1755 4.261238 CGGGAGACTGCATGTAGTTACTAG 60.261 50.000 17.99 6.59 0.00 2.57
1752 1864 5.237815 TGTTTGATGAACGAGAAGCAGTAT 58.762 37.500 0.00 0.00 41.29 2.12
1788 1906 5.376854 AACAAACTGATGTTGGATAGCAC 57.623 39.130 3.51 0.00 41.78 4.40
1831 1949 5.530915 ACGTTCTCCAATTCTGATTTTGTCA 59.469 36.000 0.00 0.00 35.05 3.58
1881 1999 4.884458 TGAAAACATACTGCAAACGTGA 57.116 36.364 0.00 0.00 0.00 4.35
1922 2040 5.351465 CGTCTACTAACATTTGCAACCTGAT 59.649 40.000 13.65 5.87 0.00 2.90
1926 2044 8.892723 TCTACTAACATTTGCAACCTGATATTG 58.107 33.333 13.65 5.00 0.00 1.90
1992 2116 2.037251 TCAGCGGTTACTCTTCTGCTTT 59.963 45.455 0.00 0.00 43.30 3.51
2003 2127 9.827411 GTTACTCTTCTGCTTTAGTTAATTTGG 57.173 33.333 0.00 0.00 0.00 3.28
2083 5394 9.448438 GGCATATTGGTTATCTTGTGATATGTA 57.552 33.333 0.00 0.00 35.36 2.29
2210 5531 4.881850 GGTTTGTTAGGTATGGTCAGATGG 59.118 45.833 0.00 0.00 0.00 3.51
2214 5535 5.030147 TGTTAGGTATGGTCAGATGGTTCT 58.970 41.667 0.00 0.00 0.00 3.01
2275 5596 2.613133 GAGCTCTTAGAAGGCAATGCTG 59.387 50.000 6.43 0.00 0.00 4.41
2349 5670 7.306866 CGTGCTATTCTTTCAGTCTAATAAGCC 60.307 40.741 0.00 0.00 0.00 4.35
2381 5702 0.863144 GCTTTGTTAGGCGAACGACA 59.137 50.000 6.01 0.00 41.35 4.35
2386 5707 3.141002 TGTTAGGCGAACGACATAGAC 57.859 47.619 6.01 0.00 41.35 2.59
2432 5753 4.521130 CTGGTTCAGCTAAGTGTACTGA 57.479 45.455 0.00 0.00 38.62 3.41
2452 5773 6.784031 ACTGACTACTGAAAATGGGAATCTT 58.216 36.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.250744 CTCGTGATACGGACACACAAAT 58.749 45.455 7.42 0.00 42.81 2.32
1 2 2.034939 ACTCGTGATACGGACACACAAA 59.965 45.455 7.42 0.00 42.81 2.83
2 3 1.610038 ACTCGTGATACGGACACACAA 59.390 47.619 7.42 0.00 42.81 3.33
3 4 1.241165 ACTCGTGATACGGACACACA 58.759 50.000 7.42 0.00 42.81 3.72
4 5 2.476854 GGTACTCGTGATACGGACACAC 60.477 54.545 1.24 3.81 42.81 3.82
5 6 1.739466 GGTACTCGTGATACGGACACA 59.261 52.381 1.24 0.00 42.81 3.72
6 7 1.739466 TGGTACTCGTGATACGGACAC 59.261 52.381 1.24 0.00 42.81 3.67
7 8 2.112380 TGGTACTCGTGATACGGACA 57.888 50.000 1.24 0.00 42.81 4.02
8 9 3.705043 ATTGGTACTCGTGATACGGAC 57.295 47.619 1.24 0.00 42.81 4.79
9 10 3.067180 GGAATTGGTACTCGTGATACGGA 59.933 47.826 1.24 0.00 42.81 4.69
10 11 3.181484 TGGAATTGGTACTCGTGATACGG 60.181 47.826 1.24 0.00 42.81 4.02
11 12 4.036567 TGGAATTGGTACTCGTGATACG 57.963 45.455 0.00 0.00 44.19 3.06
12 13 3.802685 GCTGGAATTGGTACTCGTGATAC 59.197 47.826 0.00 0.00 0.00 2.24
13 14 3.181469 GGCTGGAATTGGTACTCGTGATA 60.181 47.826 0.00 0.00 0.00 2.15
14 15 2.420129 GGCTGGAATTGGTACTCGTGAT 60.420 50.000 0.00 0.00 0.00 3.06
15 16 1.066430 GGCTGGAATTGGTACTCGTGA 60.066 52.381 0.00 0.00 0.00 4.35
16 17 1.369625 GGCTGGAATTGGTACTCGTG 58.630 55.000 0.00 0.00 0.00 4.35
17 18 0.252197 GGGCTGGAATTGGTACTCGT 59.748 55.000 0.00 0.00 0.00 4.18
18 19 0.463833 GGGGCTGGAATTGGTACTCG 60.464 60.000 0.00 0.00 0.00 4.18
19 20 0.106669 GGGGGCTGGAATTGGTACTC 60.107 60.000 0.00 0.00 0.00 2.59
20 21 0.849094 TGGGGGCTGGAATTGGTACT 60.849 55.000 0.00 0.00 0.00 2.73
21 22 0.040499 TTGGGGGCTGGAATTGGTAC 59.960 55.000 0.00 0.00 0.00 3.34
22 23 1.014804 ATTGGGGGCTGGAATTGGTA 58.985 50.000 0.00 0.00 0.00 3.25
23 24 0.325577 GATTGGGGGCTGGAATTGGT 60.326 55.000 0.00 0.00 0.00 3.67
24 25 0.031817 AGATTGGGGGCTGGAATTGG 60.032 55.000 0.00 0.00 0.00 3.16
25 26 1.117150 CAGATTGGGGGCTGGAATTG 58.883 55.000 0.00 0.00 0.00 2.32
26 27 1.009997 TCAGATTGGGGGCTGGAATT 58.990 50.000 0.00 0.00 33.05 2.17
27 28 1.238615 ATCAGATTGGGGGCTGGAAT 58.761 50.000 0.00 0.00 33.05 3.01
28 29 1.009997 AATCAGATTGGGGGCTGGAA 58.990 50.000 0.00 0.00 33.05 3.53
29 30 0.259647 CAATCAGATTGGGGGCTGGA 59.740 55.000 14.64 0.00 36.63 3.86
30 31 0.032813 ACAATCAGATTGGGGGCTGG 60.033 55.000 24.22 0.32 44.42 4.85
31 32 1.753073 GAACAATCAGATTGGGGGCTG 59.247 52.381 24.22 1.62 44.42 4.85
32 33 1.683011 CGAACAATCAGATTGGGGGCT 60.683 52.381 24.22 3.05 44.42 5.19
33 34 0.740737 CGAACAATCAGATTGGGGGC 59.259 55.000 24.22 11.02 44.42 5.80
34 35 1.340991 ACCGAACAATCAGATTGGGGG 60.341 52.381 24.22 21.76 44.42 5.40
35 36 2.128771 ACCGAACAATCAGATTGGGG 57.871 50.000 24.22 22.05 44.42 4.96
36 37 3.255642 ACAAACCGAACAATCAGATTGGG 59.744 43.478 24.22 18.20 44.42 4.12
37 38 4.503741 ACAAACCGAACAATCAGATTGG 57.496 40.909 24.22 11.10 44.42 3.16
38 39 8.519492 AAATTACAAACCGAACAATCAGATTG 57.481 30.769 19.93 19.93 45.59 2.67
39 40 8.977505 CAAAATTACAAACCGAACAATCAGATT 58.022 29.630 0.00 0.00 0.00 2.40
40 41 7.598493 CCAAAATTACAAACCGAACAATCAGAT 59.402 33.333 0.00 0.00 0.00 2.90
41 42 6.920758 CCAAAATTACAAACCGAACAATCAGA 59.079 34.615 0.00 0.00 0.00 3.27
42 43 6.920758 TCCAAAATTACAAACCGAACAATCAG 59.079 34.615 0.00 0.00 0.00 2.90
43 44 6.806751 TCCAAAATTACAAACCGAACAATCA 58.193 32.000 0.00 0.00 0.00 2.57
44 45 7.114388 GTCTCCAAAATTACAAACCGAACAATC 59.886 37.037 0.00 0.00 0.00 2.67
45 46 6.921307 GTCTCCAAAATTACAAACCGAACAAT 59.079 34.615 0.00 0.00 0.00 2.71
46 47 6.267070 GTCTCCAAAATTACAAACCGAACAA 58.733 36.000 0.00 0.00 0.00 2.83
47 48 5.221087 GGTCTCCAAAATTACAAACCGAACA 60.221 40.000 0.00 0.00 0.00 3.18
48 49 5.217393 GGTCTCCAAAATTACAAACCGAAC 58.783 41.667 0.00 0.00 0.00 3.95
49 50 5.441709 GGTCTCCAAAATTACAAACCGAA 57.558 39.130 0.00 0.00 0.00 4.30
51 52 3.817238 CGGTCTCCAAAATTACAAACCG 58.183 45.455 0.00 0.00 41.90 4.44
52 53 5.441709 TTCGGTCTCCAAAATTACAAACC 57.558 39.130 0.00 0.00 0.00 3.27
53 54 5.344933 GCATTCGGTCTCCAAAATTACAAAC 59.655 40.000 0.00 0.00 0.00 2.93
54 55 5.242838 AGCATTCGGTCTCCAAAATTACAAA 59.757 36.000 0.00 0.00 0.00 2.83
55 56 4.764823 AGCATTCGGTCTCCAAAATTACAA 59.235 37.500 0.00 0.00 0.00 2.41
56 57 4.331968 AGCATTCGGTCTCCAAAATTACA 58.668 39.130 0.00 0.00 0.00 2.41
57 58 4.965119 AGCATTCGGTCTCCAAAATTAC 57.035 40.909 0.00 0.00 0.00 1.89
58 59 4.380444 GCAAGCATTCGGTCTCCAAAATTA 60.380 41.667 0.00 0.00 0.00 1.40
59 60 3.614870 GCAAGCATTCGGTCTCCAAAATT 60.615 43.478 0.00 0.00 0.00 1.82
60 61 2.094545 GCAAGCATTCGGTCTCCAAAAT 60.095 45.455 0.00 0.00 0.00 1.82
61 62 1.269448 GCAAGCATTCGGTCTCCAAAA 59.731 47.619 0.00 0.00 0.00 2.44
62 63 0.881118 GCAAGCATTCGGTCTCCAAA 59.119 50.000 0.00 0.00 0.00 3.28
63 64 0.250684 TGCAAGCATTCGGTCTCCAA 60.251 50.000 0.00 0.00 0.00 3.53
64 65 0.955428 GTGCAAGCATTCGGTCTCCA 60.955 55.000 0.00 0.00 0.00 3.86
65 66 0.674895 AGTGCAAGCATTCGGTCTCC 60.675 55.000 0.00 0.00 0.00 3.71
66 67 1.929836 CTAGTGCAAGCATTCGGTCTC 59.070 52.381 0.00 0.00 0.00 3.36
67 68 1.276421 ACTAGTGCAAGCATTCGGTCT 59.724 47.619 0.00 0.00 0.00 3.85
68 69 1.726853 ACTAGTGCAAGCATTCGGTC 58.273 50.000 0.00 0.00 0.00 4.79
69 70 3.198068 CATACTAGTGCAAGCATTCGGT 58.802 45.455 5.39 0.22 0.00 4.69
70 71 2.032549 GCATACTAGTGCAAGCATTCGG 60.033 50.000 5.39 0.00 44.43 4.30
71 72 3.244670 GCATACTAGTGCAAGCATTCG 57.755 47.619 5.39 0.00 44.43 3.34
80 81 6.870965 AGCAATACTCAATAGCATACTAGTGC 59.129 38.462 5.39 0.75 42.76 4.40
81 82 7.869937 ACAGCAATACTCAATAGCATACTAGTG 59.130 37.037 5.39 0.00 44.07 2.74
82 83 7.957002 ACAGCAATACTCAATAGCATACTAGT 58.043 34.615 0.00 0.00 0.00 2.57
83 84 7.543868 GGACAGCAATACTCAATAGCATACTAG 59.456 40.741 0.00 0.00 0.00 2.57
84 85 7.015195 TGGACAGCAATACTCAATAGCATACTA 59.985 37.037 0.00 0.00 0.00 1.82
85 86 6.183361 TGGACAGCAATACTCAATAGCATACT 60.183 38.462 0.00 0.00 0.00 2.12
86 87 5.991606 TGGACAGCAATACTCAATAGCATAC 59.008 40.000 0.00 0.00 0.00 2.39
87 88 6.173427 TGGACAGCAATACTCAATAGCATA 57.827 37.500 0.00 0.00 0.00 3.14
88 89 5.039920 TGGACAGCAATACTCAATAGCAT 57.960 39.130 0.00 0.00 0.00 3.79
89 90 4.486125 TGGACAGCAATACTCAATAGCA 57.514 40.909 0.00 0.00 0.00 3.49
90 91 5.818136 TTTGGACAGCAATACTCAATAGC 57.182 39.130 0.00 0.00 0.00 2.97
114 115 9.672673 AGTCTGAATACACAATAGCATACTTTT 57.327 29.630 0.00 0.00 0.00 2.27
115 116 9.319143 GAGTCTGAATACACAATAGCATACTTT 57.681 33.333 0.00 0.00 0.00 2.66
116 117 7.928706 GGAGTCTGAATACACAATAGCATACTT 59.071 37.037 0.00 0.00 0.00 2.24
138 139 1.656587 TGGGTGCTAGTTCATGGAGT 58.343 50.000 0.00 0.00 0.00 3.85
154 155 8.442384 GTGCAGACAATTAAAATACAAATTGGG 58.558 33.333 11.27 3.58 43.96 4.12
174 175 3.885901 CTGAGTATACAGGCTAGTGCAGA 59.114 47.826 5.50 0.00 41.91 4.26
186 187 6.051074 CAGGCAATCATCAACTGAGTATACA 58.949 40.000 5.50 0.00 37.28 2.29
189 190 3.881688 GCAGGCAATCATCAACTGAGTAT 59.118 43.478 0.00 0.00 37.28 2.12
191 192 2.089980 GCAGGCAATCATCAACTGAGT 58.910 47.619 0.00 0.00 37.28 3.41
192 193 2.089201 TGCAGGCAATCATCAACTGAG 58.911 47.619 0.00 0.00 37.28 3.35
194 195 1.816835 AGTGCAGGCAATCATCAACTG 59.183 47.619 0.00 0.00 0.00 3.16
223 224 7.624360 TTGTCATGTAATTGGAGTATGAACC 57.376 36.000 0.00 0.00 30.43 3.62
236 237 8.102676 TGCCAGCATAGTATATTGTCATGTAAT 58.897 33.333 0.00 0.00 0.00 1.89
278 279 9.871238 GGTCACGATCCTATAATACATACAAAT 57.129 33.333 0.00 0.00 0.00 2.32
307 308 2.030701 GTCCGTACGTCTTGTGCAAAAA 59.969 45.455 15.21 0.00 31.89 1.94
309 310 1.210870 GTCCGTACGTCTTGTGCAAA 58.789 50.000 15.21 0.00 31.89 3.68
310 311 0.598158 GGTCCGTACGTCTTGTGCAA 60.598 55.000 15.21 0.00 31.89 4.08
311 312 1.007038 GGTCCGTACGTCTTGTGCA 60.007 57.895 15.21 0.00 31.89 4.57
312 313 1.735559 GGGTCCGTACGTCTTGTGC 60.736 63.158 15.21 0.00 0.00 4.57
313 314 1.080298 GGGGTCCGTACGTCTTGTG 60.080 63.158 15.21 0.00 0.00 3.33
314 315 1.114722 TTGGGGTCCGTACGTCTTGT 61.115 55.000 15.21 0.00 0.00 3.16
315 316 0.033781 TTTGGGGTCCGTACGTCTTG 59.966 55.000 15.21 0.00 0.00 3.02
316 317 0.978907 ATTTGGGGTCCGTACGTCTT 59.021 50.000 15.21 0.00 0.00 3.01
317 318 0.978907 AATTTGGGGTCCGTACGTCT 59.021 50.000 15.21 0.00 0.00 4.18
318 319 2.094026 ACTAATTTGGGGTCCGTACGTC 60.094 50.000 15.21 6.83 0.00 4.34
320 321 2.678471 ACTAATTTGGGGTCCGTACG 57.322 50.000 8.69 8.69 0.00 3.67
321 322 5.052481 GTGATACTAATTTGGGGTCCGTAC 58.948 45.833 0.00 0.00 0.00 3.67
323 324 3.118149 GGTGATACTAATTTGGGGTCCGT 60.118 47.826 0.00 0.00 0.00 4.69
324 325 3.135895 AGGTGATACTAATTTGGGGTCCG 59.864 47.826 0.00 0.00 0.00 4.79
325 326 4.715713 GAGGTGATACTAATTTGGGGTCC 58.284 47.826 0.00 0.00 0.00 4.46
326 327 4.141779 ACGAGGTGATACTAATTTGGGGTC 60.142 45.833 0.00 0.00 0.00 4.46
328 329 4.417426 ACGAGGTGATACTAATTTGGGG 57.583 45.455 0.00 0.00 0.00 4.96
329 330 5.646360 ACAAACGAGGTGATACTAATTTGGG 59.354 40.000 0.00 0.00 33.20 4.12
330 331 6.737254 ACAAACGAGGTGATACTAATTTGG 57.263 37.500 0.00 0.00 33.20 3.28
333 334 9.241317 CGTAATACAAACGAGGTGATACTAATT 57.759 33.333 0.00 0.00 42.90 1.40
334 335 8.623903 TCGTAATACAAACGAGGTGATACTAAT 58.376 33.333 0.00 0.00 43.90 1.73
335 336 7.984391 TCGTAATACAAACGAGGTGATACTAA 58.016 34.615 0.00 0.00 43.90 2.24
337 338 6.441093 TCGTAATACAAACGAGGTGATACT 57.559 37.500 0.00 0.00 43.90 2.12
378 379 9.764363 TCTTCTCATGTCATAATACGCTTTTAT 57.236 29.630 0.00 0.00 0.00 1.40
379 380 9.594478 TTCTTCTCATGTCATAATACGCTTTTA 57.406 29.630 0.00 0.00 0.00 1.52
380 381 8.492673 TTCTTCTCATGTCATAATACGCTTTT 57.507 30.769 0.00 0.00 0.00 2.27
381 382 8.492673 TTTCTTCTCATGTCATAATACGCTTT 57.507 30.769 0.00 0.00 0.00 3.51
382 383 7.254590 GCTTTCTTCTCATGTCATAATACGCTT 60.255 37.037 0.00 0.00 0.00 4.68
383 384 6.201806 GCTTTCTTCTCATGTCATAATACGCT 59.798 38.462 0.00 0.00 0.00 5.07
384 385 6.358762 GCTTTCTTCTCATGTCATAATACGC 58.641 40.000 0.00 0.00 0.00 4.42
385 386 6.199154 ACGCTTTCTTCTCATGTCATAATACG 59.801 38.462 0.00 0.00 0.00 3.06
386 387 7.470289 ACGCTTTCTTCTCATGTCATAATAC 57.530 36.000 0.00 0.00 0.00 1.89
387 388 9.764363 AATACGCTTTCTTCTCATGTCATAATA 57.236 29.630 0.00 0.00 0.00 0.98
388 389 8.554528 CAATACGCTTTCTTCTCATGTCATAAT 58.445 33.333 0.00 0.00 0.00 1.28
389 390 7.465916 GCAATACGCTTTCTTCTCATGTCATAA 60.466 37.037 0.00 0.00 37.77 1.90
390 391 6.018751 GCAATACGCTTTCTTCTCATGTCATA 60.019 38.462 0.00 0.00 37.77 2.15
391 392 5.220739 GCAATACGCTTTCTTCTCATGTCAT 60.221 40.000 0.00 0.00 37.77 3.06
392 393 4.093408 GCAATACGCTTTCTTCTCATGTCA 59.907 41.667 0.00 0.00 37.77 3.58
393 394 4.582459 GCAATACGCTTTCTTCTCATGTC 58.418 43.478 0.00 0.00 37.77 3.06
394 395 3.062639 CGCAATACGCTTTCTTCTCATGT 59.937 43.478 0.00 0.00 39.08 3.21
395 396 3.306973 TCGCAATACGCTTTCTTCTCATG 59.693 43.478 0.00 0.00 43.23 3.07
396 397 3.307242 GTCGCAATACGCTTTCTTCTCAT 59.693 43.478 0.00 0.00 43.23 2.90
397 398 2.666508 GTCGCAATACGCTTTCTTCTCA 59.333 45.455 0.00 0.00 43.23 3.27
398 399 2.284514 CGTCGCAATACGCTTTCTTCTC 60.285 50.000 0.00 0.00 43.23 2.87
399 400 1.654105 CGTCGCAATACGCTTTCTTCT 59.346 47.619 0.00 0.00 43.23 2.85
400 401 1.266891 CCGTCGCAATACGCTTTCTTC 60.267 52.381 0.00 0.00 43.23 2.87
401 402 0.719465 CCGTCGCAATACGCTTTCTT 59.281 50.000 0.00 0.00 43.23 2.52
402 403 0.389426 ACCGTCGCAATACGCTTTCT 60.389 50.000 0.00 0.00 43.23 2.52
403 404 0.247145 CACCGTCGCAATACGCTTTC 60.247 55.000 0.00 0.00 43.23 2.62
404 405 0.668096 TCACCGTCGCAATACGCTTT 60.668 50.000 0.00 0.00 43.23 3.51
405 406 0.668096 TTCACCGTCGCAATACGCTT 60.668 50.000 0.00 0.00 43.23 4.68
406 407 1.080366 TTCACCGTCGCAATACGCT 60.080 52.632 0.00 0.00 43.23 5.07
407 408 1.058284 GTTCACCGTCGCAATACGC 59.942 57.895 0.00 0.00 43.23 4.42
408 409 1.689352 GGGTTCACCGTCGCAATACG 61.689 60.000 0.00 0.00 42.49 3.06
409 410 2.084013 GGGTTCACCGTCGCAATAC 58.916 57.895 0.00 0.00 36.71 1.89
410 411 4.602159 GGGTTCACCGTCGCAATA 57.398 55.556 0.00 0.00 36.71 1.90
419 420 1.670791 TTGACTTTGTCGGGTTCACC 58.329 50.000 0.00 0.00 34.95 4.02
420 421 2.225727 GGATTGACTTTGTCGGGTTCAC 59.774 50.000 0.00 0.00 34.95 3.18
421 422 2.500229 GGATTGACTTTGTCGGGTTCA 58.500 47.619 0.00 0.00 34.95 3.18
422 423 1.463444 CGGATTGACTTTGTCGGGTTC 59.537 52.381 0.00 0.00 34.95 3.62
423 424 1.202722 ACGGATTGACTTTGTCGGGTT 60.203 47.619 0.00 0.00 34.95 4.11
424 425 0.395312 ACGGATTGACTTTGTCGGGT 59.605 50.000 0.00 0.00 34.95 5.28
425 426 0.796312 CACGGATTGACTTTGTCGGG 59.204 55.000 0.00 0.00 34.95 5.14
426 427 0.165944 GCACGGATTGACTTTGTCGG 59.834 55.000 0.00 0.00 34.95 4.79
427 428 1.148310 AGCACGGATTGACTTTGTCG 58.852 50.000 0.00 0.00 34.95 4.35
428 429 3.626028 AAAGCACGGATTGACTTTGTC 57.374 42.857 0.00 0.00 33.18 3.18
429 430 5.705609 AATAAAGCACGGATTGACTTTGT 57.294 34.783 0.00 0.00 34.97 2.83
430 431 9.438291 CTAATAATAAAGCACGGATTGACTTTG 57.562 33.333 0.00 0.00 34.97 2.77
431 432 8.621286 CCTAATAATAAAGCACGGATTGACTTT 58.379 33.333 0.00 0.00 36.31 2.66
432 433 7.228706 CCCTAATAATAAAGCACGGATTGACTT 59.771 37.037 0.00 0.00 0.00 3.01
433 434 6.710744 CCCTAATAATAAAGCACGGATTGACT 59.289 38.462 0.00 0.00 0.00 3.41
434 435 6.708949 TCCCTAATAATAAAGCACGGATTGAC 59.291 38.462 0.00 0.00 0.00 3.18
435 436 6.833041 TCCCTAATAATAAAGCACGGATTGA 58.167 36.000 0.00 0.00 0.00 2.57
436 437 6.934645 TCTCCCTAATAATAAAGCACGGATTG 59.065 38.462 0.00 0.00 0.00 2.67
437 438 7.016268 TCTCTCCCTAATAATAAAGCACGGATT 59.984 37.037 0.00 0.00 0.00 3.01
438 439 6.497259 TCTCTCCCTAATAATAAAGCACGGAT 59.503 38.462 0.00 0.00 0.00 4.18
439 440 5.836898 TCTCTCCCTAATAATAAAGCACGGA 59.163 40.000 0.00 0.00 0.00 4.69
440 441 6.097915 TCTCTCCCTAATAATAAAGCACGG 57.902 41.667 0.00 0.00 0.00 4.94
441 442 7.657761 ACAATCTCTCCCTAATAATAAAGCACG 59.342 37.037 0.00 0.00 0.00 5.34
442 443 8.910351 ACAATCTCTCCCTAATAATAAAGCAC 57.090 34.615 0.00 0.00 0.00 4.40
443 444 9.561069 GAACAATCTCTCCCTAATAATAAAGCA 57.439 33.333 0.00 0.00 0.00 3.91
444 445 9.561069 TGAACAATCTCTCCCTAATAATAAAGC 57.439 33.333 0.00 0.00 0.00 3.51
479 480 5.495926 AATGGCATTTGGTTCATGGTTAA 57.504 34.783 6.96 0.00 0.00 2.01
480 481 6.805016 ATAATGGCATTTGGTTCATGGTTA 57.195 33.333 19.21 0.00 0.00 2.85
481 482 5.697082 ATAATGGCATTTGGTTCATGGTT 57.303 34.783 19.21 0.00 0.00 3.67
487 488 9.382275 ACATAAAGAAATAATGGCATTTGGTTC 57.618 29.630 19.21 17.38 0.00 3.62
520 521 3.196254 GGTTTACGGGATAGGAACACAGA 59.804 47.826 0.00 0.00 0.00 3.41
521 522 3.055675 TGGTTTACGGGATAGGAACACAG 60.056 47.826 0.00 0.00 0.00 3.66
554 638 8.306313 TGCTCAGACTATAGGAATAGAAAACA 57.694 34.615 4.43 0.00 37.84 2.83
559 643 8.484214 ACAAATGCTCAGACTATAGGAATAGA 57.516 34.615 4.43 0.00 37.84 1.98
582 666 3.216800 GGCATGCATCTGAAATCCTACA 58.783 45.455 21.36 0.00 0.00 2.74
583 667 3.004106 GTGGCATGCATCTGAAATCCTAC 59.996 47.826 21.36 0.00 0.00 3.18
634 718 8.345565 CCTTTGGTTCATAAGATAGGAATTTCG 58.654 37.037 0.00 0.00 30.67 3.46
647 731 5.670361 AGTATAGGCCTCCTTTGGTTCATAA 59.330 40.000 9.68 0.00 34.61 1.90
686 770 4.969196 ATGATACCCCGCGCGCTG 62.969 66.667 30.48 23.42 0.00 5.18
687 771 4.664677 GATGATACCCCGCGCGCT 62.665 66.667 30.48 13.20 0.00 5.92
688 772 3.277211 TAGATGATACCCCGCGCGC 62.277 63.158 27.36 23.91 0.00 6.86
689 773 1.154016 CTAGATGATACCCCGCGCG 60.154 63.158 25.67 25.67 0.00 6.86
690 774 0.317479 AACTAGATGATACCCCGCGC 59.683 55.000 0.00 0.00 0.00 6.86
691 775 2.296471 AGAAACTAGATGATACCCCGCG 59.704 50.000 0.00 0.00 0.00 6.46
692 776 5.464030 TTAGAAACTAGATGATACCCCGC 57.536 43.478 0.00 0.00 0.00 6.13
693 777 8.904099 AATTTTAGAAACTAGATGATACCCCG 57.096 34.615 0.00 0.00 0.00 5.73
697 781 9.865484 GCCGAAATTTTAGAAACTAGATGATAC 57.135 33.333 0.00 0.00 0.00 2.24
698 782 9.832445 AGCCGAAATTTTAGAAACTAGATGATA 57.168 29.630 0.00 0.00 0.00 2.15
699 783 8.616076 CAGCCGAAATTTTAGAAACTAGATGAT 58.384 33.333 0.00 0.00 0.00 2.45
700 784 7.414098 GCAGCCGAAATTTTAGAAACTAGATGA 60.414 37.037 0.00 0.00 0.00 2.92
701 785 6.688813 GCAGCCGAAATTTTAGAAACTAGATG 59.311 38.462 0.00 0.00 0.00 2.90
702 786 6.183360 GGCAGCCGAAATTTTAGAAACTAGAT 60.183 38.462 0.00 0.00 0.00 1.98
703 787 5.123344 GGCAGCCGAAATTTTAGAAACTAGA 59.877 40.000 0.00 0.00 0.00 2.43
704 788 5.332707 GGCAGCCGAAATTTTAGAAACTAG 58.667 41.667 0.00 0.00 0.00 2.57
705 789 4.157105 GGGCAGCCGAAATTTTAGAAACTA 59.843 41.667 5.00 0.00 0.00 2.24
706 790 3.056821 GGGCAGCCGAAATTTTAGAAACT 60.057 43.478 5.00 0.00 0.00 2.66
707 791 3.250744 GGGCAGCCGAAATTTTAGAAAC 58.749 45.455 5.00 0.00 0.00 2.78
708 792 2.232696 GGGGCAGCCGAAATTTTAGAAA 59.767 45.455 5.00 0.00 0.00 2.52
709 793 1.822371 GGGGCAGCCGAAATTTTAGAA 59.178 47.619 5.00 0.00 0.00 2.10
710 794 1.470051 GGGGCAGCCGAAATTTTAGA 58.530 50.000 5.00 0.00 0.00 2.10
711 795 0.100503 CGGGGCAGCCGAAATTTTAG 59.899 55.000 5.00 0.00 0.00 1.85
712 796 0.609681 ACGGGGCAGCCGAAATTTTA 60.610 50.000 5.00 0.00 34.52 1.52
713 797 1.873270 GACGGGGCAGCCGAAATTTT 61.873 55.000 5.00 0.00 34.52 1.82
714 798 2.282887 ACGGGGCAGCCGAAATTT 60.283 55.556 5.00 0.00 34.52 1.82
715 799 2.750237 GACGGGGCAGCCGAAATT 60.750 61.111 5.00 0.00 34.52 1.82
716 800 4.028490 TGACGGGGCAGCCGAAAT 62.028 61.111 5.00 0.00 34.52 2.17
722 806 4.643387 AACTGGTGACGGGGCAGC 62.643 66.667 0.00 0.00 42.76 5.25
723 807 1.966451 GAAACTGGTGACGGGGCAG 60.966 63.158 0.00 0.00 42.76 4.85
724 808 1.990160 AAGAAACTGGTGACGGGGCA 61.990 55.000 0.00 0.00 42.76 5.36
725 809 0.035739 TAAGAAACTGGTGACGGGGC 59.964 55.000 0.00 0.00 42.76 5.80
726 810 2.554370 TTAAGAAACTGGTGACGGGG 57.446 50.000 0.00 0.00 42.76 5.73
727 811 5.121768 CAGTAATTAAGAAACTGGTGACGGG 59.878 44.000 6.70 0.00 42.76 5.28
728 812 6.165659 CAGTAATTAAGAAACTGGTGACGG 57.834 41.667 6.70 0.00 44.60 4.79
763 847 9.902196 CCTACGGCCGAAATTTTTATTATTAAT 57.098 29.630 35.90 4.55 0.00 1.40
764 848 8.901793 ACCTACGGCCGAAATTTTTATTATTAA 58.098 29.630 35.90 0.00 0.00 1.40
765 849 8.344098 CACCTACGGCCGAAATTTTTATTATTA 58.656 33.333 35.90 7.20 0.00 0.98
766 850 7.197703 CACCTACGGCCGAAATTTTTATTATT 58.802 34.615 35.90 6.21 0.00 1.40
767 851 6.238814 CCACCTACGGCCGAAATTTTTATTAT 60.239 38.462 35.90 6.74 0.00 1.28
768 852 5.066246 CCACCTACGGCCGAAATTTTTATTA 59.934 40.000 35.90 8.51 0.00 0.98
769 853 4.142337 CCACCTACGGCCGAAATTTTTATT 60.142 41.667 35.90 7.61 0.00 1.40
770 854 3.379057 CCACCTACGGCCGAAATTTTTAT 59.621 43.478 35.90 8.50 0.00 1.40
771 855 2.748532 CCACCTACGGCCGAAATTTTTA 59.251 45.455 35.90 11.01 0.00 1.52
772 856 1.542472 CCACCTACGGCCGAAATTTTT 59.458 47.619 35.90 10.28 0.00 1.94
773 857 1.170442 CCACCTACGGCCGAAATTTT 58.830 50.000 35.90 11.18 0.00 1.82
774 858 0.678684 CCCACCTACGGCCGAAATTT 60.679 55.000 35.90 12.08 0.00 1.82
775 859 1.078001 CCCACCTACGGCCGAAATT 60.078 57.895 35.90 12.54 0.00 1.82
776 860 1.342672 ATCCCACCTACGGCCGAAAT 61.343 55.000 35.90 12.99 0.00 2.17
777 861 1.991167 ATCCCACCTACGGCCGAAA 60.991 57.895 35.90 18.69 0.00 3.46
778 862 2.364579 ATCCCACCTACGGCCGAA 60.365 61.111 35.90 6.43 0.00 4.30
779 863 3.151710 CATCCCACCTACGGCCGA 61.152 66.667 35.90 14.96 0.00 5.54
780 864 4.235762 CCATCCCACCTACGGCCG 62.236 72.222 26.86 26.86 0.00 6.13
781 865 3.873812 CCCATCCCACCTACGGCC 61.874 72.222 0.00 0.00 0.00 6.13
782 866 4.564110 GCCCATCCCACCTACGGC 62.564 72.222 0.00 0.00 0.00 5.68
783 867 3.873812 GGCCCATCCCACCTACGG 61.874 72.222 0.00 0.00 0.00 4.02
784 868 2.608970 CTTGGCCCATCCCACCTACG 62.609 65.000 0.00 0.00 33.82 3.51
785 869 1.227383 CTTGGCCCATCCCACCTAC 59.773 63.158 0.00 0.00 33.82 3.18
786 870 1.083895 TCTTGGCCCATCCCACCTA 59.916 57.895 0.00 0.00 33.82 3.08
787 871 2.204291 TCTTGGCCCATCCCACCT 60.204 61.111 0.00 0.00 33.82 4.00
788 872 2.043953 GTCTTGGCCCATCCCACC 60.044 66.667 0.00 0.00 33.82 4.61
789 873 1.379044 CAGTCTTGGCCCATCCCAC 60.379 63.158 0.00 0.00 33.82 4.61
790 874 3.089838 CAGTCTTGGCCCATCCCA 58.910 61.111 0.00 0.00 0.00 4.37
791 875 2.440980 GCAGTCTTGGCCCATCCC 60.441 66.667 0.00 0.00 0.00 3.85
792 876 1.452833 GAGCAGTCTTGGCCCATCC 60.453 63.158 0.00 0.00 0.00 3.51
793 877 1.452833 GGAGCAGTCTTGGCCCATC 60.453 63.158 0.00 0.00 0.00 3.51
794 878 2.679716 GGAGCAGTCTTGGCCCAT 59.320 61.111 0.00 0.00 0.00 4.00
795 879 4.020617 CGGAGCAGTCTTGGCCCA 62.021 66.667 0.00 0.00 0.00 5.36
796 880 4.785453 CCGGAGCAGTCTTGGCCC 62.785 72.222 0.00 0.00 0.00 5.80
797 881 4.785453 CCCGGAGCAGTCTTGGCC 62.785 72.222 0.73 0.00 0.00 5.36
798 882 2.180159 TAACCCGGAGCAGTCTTGGC 62.180 60.000 0.73 0.00 0.00 4.52
799 883 0.323629 TTAACCCGGAGCAGTCTTGG 59.676 55.000 0.73 0.00 0.00 3.61
800 884 1.270625 TGTTAACCCGGAGCAGTCTTG 60.271 52.381 0.73 0.00 0.00 3.02
801 885 1.002087 CTGTTAACCCGGAGCAGTCTT 59.998 52.381 0.73 0.00 0.00 3.01
802 886 0.608640 CTGTTAACCCGGAGCAGTCT 59.391 55.000 0.73 0.00 0.00 3.24
803 887 0.391263 CCTGTTAACCCGGAGCAGTC 60.391 60.000 0.73 0.00 0.00 3.51
804 888 1.677552 CCTGTTAACCCGGAGCAGT 59.322 57.895 0.73 0.00 0.00 4.40
805 889 1.078426 CCCTGTTAACCCGGAGCAG 60.078 63.158 0.73 0.00 0.00 4.24
806 890 1.844289 ACCCTGTTAACCCGGAGCA 60.844 57.895 0.73 0.00 0.00 4.26
807 891 1.376812 CACCCTGTTAACCCGGAGC 60.377 63.158 0.73 0.00 0.00 4.70
808 892 1.376812 GCACCCTGTTAACCCGGAG 60.377 63.158 0.73 7.79 0.00 4.63
809 893 1.833787 GAGCACCCTGTTAACCCGGA 61.834 60.000 0.73 0.00 0.00 5.14
810 894 1.376812 GAGCACCCTGTTAACCCGG 60.377 63.158 2.48 4.86 0.00 5.73
811 895 0.035439 ATGAGCACCCTGTTAACCCG 60.035 55.000 2.48 0.00 0.00 5.28
812 896 2.215942 AATGAGCACCCTGTTAACCC 57.784 50.000 2.48 0.00 0.00 4.11
813 897 2.161609 CGAAATGAGCACCCTGTTAACC 59.838 50.000 2.48 0.00 0.00 2.85
814 898 2.414161 GCGAAATGAGCACCCTGTTAAC 60.414 50.000 0.00 0.00 34.19 2.01
815 899 1.810151 GCGAAATGAGCACCCTGTTAA 59.190 47.619 0.00 0.00 34.19 2.01
816 900 1.448985 GCGAAATGAGCACCCTGTTA 58.551 50.000 0.00 0.00 34.19 2.41
817 901 1.244019 GGCGAAATGAGCACCCTGTT 61.244 55.000 0.00 0.00 36.08 3.16
818 902 1.675641 GGCGAAATGAGCACCCTGT 60.676 57.895 0.00 0.00 36.08 4.00
819 903 1.372087 GAGGCGAAATGAGCACCCTG 61.372 60.000 0.00 0.00 36.08 4.45
820 904 1.078143 GAGGCGAAATGAGCACCCT 60.078 57.895 0.00 0.00 36.08 4.34
885 969 4.084433 GCAGGTGTGTGTTGCATTTAAATG 60.084 41.667 21.54 21.54 37.75 2.32
887 971 3.452474 GCAGGTGTGTGTTGCATTTAAA 58.548 40.909 0.00 0.00 37.75 1.52
898 982 1.665916 CAGAGGACGCAGGTGTGTG 60.666 63.158 0.00 0.00 39.12 3.82
1154 1250 0.872881 CCCGTTCTTGTCGTCGTTGT 60.873 55.000 0.00 0.00 0.00 3.32
1155 1251 1.850640 CCCGTTCTTGTCGTCGTTG 59.149 57.895 0.00 0.00 0.00 4.10
1156 1252 1.952635 GCCCGTTCTTGTCGTCGTT 60.953 57.895 0.00 0.00 0.00 3.85
1228 1324 3.213402 CTCCTCCTCCTCGCCGTC 61.213 72.222 0.00 0.00 0.00 4.79
1320 1419 2.352805 CAGTCCTGGTGGAAGGCC 59.647 66.667 0.00 0.00 45.18 5.19
1563 1665 0.605589 CTCACAAGAACCGCTCTCCT 59.394 55.000 0.00 0.00 31.02 3.69
1611 1722 2.009042 GCAGTCTCCCGTCCAAGAATG 61.009 57.143 0.00 0.00 39.82 2.67
1667 1778 5.357742 AAAGACCCAAATCTGCAAAAAGT 57.642 34.783 0.00 0.00 0.00 2.66
1752 1864 7.607607 ACATCAGTTTGTTATCTTCACAGCATA 59.392 33.333 0.00 0.00 0.00 3.14
1772 1888 3.721035 TCGATGTGCTATCCAACATCAG 58.279 45.455 14.22 8.27 38.97 2.90
1788 1906 4.982999 ACGTCGGATTAATAGGATCGATG 58.017 43.478 0.54 0.00 0.00 3.84
1831 1949 7.059202 ACAGCTCAAAGGAAGAATCAAAATT 57.941 32.000 0.00 0.00 0.00 1.82
1881 1999 2.564947 AGACGCTTCAGATTCTGAACCT 59.435 45.455 22.26 14.42 44.27 3.50
1900 2018 8.892723 CAATATCAGGTTGCAAATGTTAGTAGA 58.107 33.333 0.00 0.00 0.00 2.59
1939 2063 7.615365 TCATTAAAGAACCATGAAGGCATAACT 59.385 33.333 0.00 0.00 43.14 2.24
2003 2127 8.199449 TGGAGCATTTGATCTGAAAATTAATCC 58.801 33.333 0.00 0.85 0.00 3.01
2083 5394 7.537596 AGCTCTGCTAGTACTCATAATTCAT 57.462 36.000 0.00 0.00 36.99 2.57
2132 5443 4.222336 TGACATTTGAGGAAACCCAACAT 58.778 39.130 0.00 0.00 0.00 2.71
2210 5531 9.997482 TTCACACAAGTAAACTAAATTCAGAAC 57.003 29.630 0.00 0.00 0.00 3.01
2222 5543 6.204688 TCCATGACTCATTCACACAAGTAAAC 59.795 38.462 0.00 0.00 36.92 2.01
2275 5596 5.660460 ACATGTCCAAAACCAAGAAACTTC 58.340 37.500 0.00 0.00 0.00 3.01
2324 5645 7.495934 TGGCTTATTAGACTGAAAGAATAGCAC 59.504 37.037 0.00 0.00 37.43 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.