AutoCloner

Multiple sequence alignment - TraesCS6B01G273100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G273100	chr6B	100.000	3486	0	0	1	3486	493320310	493316825	0.000000e+00	6438.0
1	TraesCS6B01G273100	chr6B	90.947	486	40	4	3000	3484	172983872	172984354	0.000000e+00	651.0
2	TraesCS6B01G273100	chr6B	89.362	47	4	1	9	55	144325817	144325862	1.350000e-04	58.4
3	TraesCS6B01G273100	chr6D	92.605	2718	140	33	201	2902	328965986	328963314	0.000000e+00	3849.0
4	TraesCS6B01G273100	chr6D	92.632	190	9	4	4	192	328966143	328965958	5.740000e-68	268.0
5	TraesCS6B01G273100	chr6A	93.090	1317	62	10	1283	2575	468258034	468256723	0.000000e+00	1901.0
6	TraesCS6B01G273100	chr6A	92.091	1277	72	10	47	1314	468259298	468258042	0.000000e+00	1772.0
7	TraesCS6B01G273100	chr6A	89.949	587	48	9	2901	3486	558937266	558937842	0.000000e+00	747.0
8	TraesCS6B01G273100	chr6A	94.262	488	24	4	3000	3486	594466502	594466986	0.000000e+00	743.0
9	TraesCS6B01G273100	chr6A	89.943	348	23	5	2566	2902	468254736	468254390	4.130000e-119	438.0
10	TraesCS6B01G273100	chr6A	91.071	56	5	0	2901	2956	594466446	594466501	3.730000e-10	76.8
11	TraesCS6B01G273100	chr4A	95.069	507	23	2	2980	3486	709217007	709217511	0.000000e+00	797.0
12	TraesCS6B01G273100	chr4A	89.922	516	38	9	2980	3486	596751280	596750770	0.000000e+00	652.0
13	TraesCS6B01G273100	chr4A	97.436	39	1	0	2903	2941	596751327	596751289	2.250000e-07	67.6
14	TraesCS6B01G273100	chr5B	95.483	487	17	4	3000	3486	408433174	408432693	0.000000e+00	773.0
15	TraesCS6B01G273100	chr5B	91.643	359	16	5	2902	3260	460471825	460472169	5.230000e-133	484.0
16	TraesCS6B01G273100	chr1D	89.696	592	27	19	2901	3486	377362857	377363420	0.000000e+00	725.0
17	TraesCS6B01G273100	chr1D	87.234	47	4	2	9	55	436624348	436624304	6.000000e-03	52.8
18	TraesCS6B01G273100	chr1D	100.000	28	0	0	9	36	436627481	436627454	6.000000e-03	52.8
19	TraesCS6B01G273100	chr3B	89.943	527	39	9	2961	3486	581029425	581028912	0.000000e+00	667.0
20	TraesCS6B01G273100	chr3B	91.317	357	16	6	2904	3260	805541032	805541373	1.130000e-129	473.0
21	TraesCS6B01G273100	chr7A	90.154	518	34	9	2980	3486	726760598	726761109	0.000000e+00	658.0
22	TraesCS6B01G273100	chr2B	87.223	587	45	12	2901	3486	662887969	662888526	2.930000e-180	641.0
23	TraesCS6B01G273100	chr2B	91.803	61	5	0	2901	2961	483470145	483470205	6.200000e-13	86.1
24	TraesCS6B01G273100	chr1B	97.561	41	1	0	2901	2941	654512144	654512184	1.740000e-08	71.3
25	TraesCS6B01G273100	chr1B	87.234	47	4	2	9	55	591441388	591441344	6.000000e-03	52.8
26	TraesCS6B01G273100	chr1B	100.000	28	0	0	9	36	591444835	591444808	6.000000e-03	52.8
27	TraesCS6B01G273100	chr4B	76.712	146	21	8	337	469	666614478	666614623	6.240000e-08	69.4
28	TraesCS6B01G273100	chr3D	100.000	34	0	0	6	39	310375697	310375730	2.900000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G273100	chr6B	493316825	493320310	3485	True	6438.000000	6438	100.0000	1	3486	1	chr6B.!!$R1	3485
1	TraesCS6B01G273100	chr6D	328963314	328966143	2829	True	2058.500000	3849	92.6185	4	2902	2	chr6D.!!$R1	2898
2	TraesCS6B01G273100	chr6A	468254390	468259298	4908	True	1370.333333	1901	91.7080	47	2902	3	chr6A.!!$R1	2855
3	TraesCS6B01G273100	chr6A	558937266	558937842	576	False	747.000000	747	89.9490	2901	3486	1	chr6A.!!$F1	585
4	TraesCS6B01G273100	chr6A	594466446	594466986	540	False	409.900000	743	92.6665	2901	3486	2	chr6A.!!$F2	585
5	TraesCS6B01G273100	chr4A	709217007	709217511	504	False	797.000000	797	95.0690	2980	3486	1	chr4A.!!$F1	506
6	TraesCS6B01G273100	chr4A	596750770	596751327	557	True	359.800000	652	93.6790	2903	3486	2	chr4A.!!$R1	583
7	TraesCS6B01G273100	chr1D	377362857	377363420	563	False	725.000000	725	89.6960	2901	3486	1	chr1D.!!$F1	585
8	TraesCS6B01G273100	chr3B	581028912	581029425	513	True	667.000000	667	89.9430	2961	3486	1	chr3B.!!$R1	525
9	TraesCS6B01G273100	chr7A	726760598	726761109	511	False	658.000000	658	90.1540	2980	3486	1	chr7A.!!$F1	506
10	TraesCS6B01G273100	chr2B	662887969	662888526	557	False	641.000000	641	87.2230	2901	3486	1	chr2B.!!$F2	585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
583	629	0.037697	CACTACAGTTACGCAGGCCA	60.038	55.0	5.01	0.0	0.00	5.36	F
1314	1411	0.319900	TCACTTCCTTCAGCACGAGC	60.320	55.0	0.00	0.0	42.56	5.03	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2050	2163	0.320697	GGACAGCAAAGGGTACGACT	59.679	55.0	0.0	0.0	0.00	4.18	R
2792	4914	0.026803	GCCGAGCTTAAATCGCTGTG	59.973	55.0	4.6	0.0	37.96	3.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	9.671279	AAAAGTTCATGAATTTGAAAAGAAGGT	57.329	25.926	15.98	0.00	37.36	3.50
45	46	6.437928	TCATGAATTTGAAAAGAAGGTCACG	58.562	36.000	0.00	0.00	0.00	4.35
149	150	4.025229	TCACGAATTGGTGAAAAGTTCTCG	60.025	41.667	19.49	0.00	43.55	4.04
167	168	7.368059	AGTTCTCGGGTTTGAAAATTATTCAC	58.632	34.615	3.51	0.00	0.00	3.18
195	196	4.677584	TGAAAATTGTTCGTGGTTTCCAG	58.322	39.130	0.00	0.00	32.34	3.86
325	328	6.796705	GCTAGAAGCTTTACAAAACCTACA	57.203	37.500	0.00	0.00	38.45	2.74
370	373	3.914426	AAACCGGATGATGTAGCTTCT	57.086	42.857	9.46	0.00	0.00	2.85
492	538	2.124768	TGGGATGACCAGGCCAGA	59.875	61.111	5.01	0.00	46.80	3.86
493	539	1.541118	TGGGATGACCAGGCCAGAA	60.541	57.895	5.01	0.00	46.80	3.02
494	540	1.225704	GGGATGACCAGGCCAGAAG	59.774	63.158	5.01	0.00	39.85	2.85
495	541	1.225704	GGATGACCAGGCCAGAAGG	59.774	63.158	5.01	3.41	35.97	3.46
496	542	1.274703	GGATGACCAGGCCAGAAGGA	61.275	60.000	5.01	0.00	34.59	3.36
497	543	0.842635	GATGACCAGGCCAGAAGGAT	59.157	55.000	5.01	0.00	36.89	3.24
498	544	1.213926	GATGACCAGGCCAGAAGGATT	59.786	52.381	5.01	0.00	36.89	3.01
499	545	1.075601	TGACCAGGCCAGAAGGATTT	58.924	50.000	5.01	0.00	36.89	2.17
500	546	1.428912	TGACCAGGCCAGAAGGATTTT	59.571	47.619	5.01	0.00	36.89	1.82
501	547	1.821136	GACCAGGCCAGAAGGATTTTG	59.179	52.381	5.01	0.00	36.89	2.44
502	548	1.428912	ACCAGGCCAGAAGGATTTTGA	59.571	47.619	5.01	0.00	36.89	2.69
503	549	2.097825	CCAGGCCAGAAGGATTTTGAG	58.902	52.381	5.01	0.00	36.89	3.02
504	550	2.556114	CCAGGCCAGAAGGATTTTGAGT	60.556	50.000	5.01	0.00	36.89	3.41
505	551	2.490903	CAGGCCAGAAGGATTTTGAGTG	59.509	50.000	5.01	0.00	36.89	3.51
506	552	2.108952	AGGCCAGAAGGATTTTGAGTGT	59.891	45.455	5.01	0.00	36.89	3.55
507	553	2.489722	GGCCAGAAGGATTTTGAGTGTC	59.510	50.000	0.00	0.00	36.89	3.67
508	554	2.489722	GCCAGAAGGATTTTGAGTGTCC	59.510	50.000	0.00	0.00	36.89	4.02
517	563	2.543777	TTTGAGTGTCCTGTGGTAGC	57.456	50.000	0.00	0.00	0.00	3.58
583	629	0.037697	CACTACAGTTACGCAGGCCA	60.038	55.000	5.01	0.00	0.00	5.36
604	650	1.394266	GCCGATTTGGTCCCATGCAT	61.394	55.000	0.00	0.00	41.21	3.96
742	789	6.853720	TGTTTAACAACGATCTGGAACAAAA	58.146	32.000	0.00	0.00	34.40	2.44
774	821	3.706802	TCGTTTGAATATACGGCCGTA	57.293	42.857	37.91	37.91	38.26	4.02
900	950	3.941483	CTCGATGAAAACTGCTGGGTAAT	59.059	43.478	0.00	0.00	0.00	1.89
906	956	4.892934	TGAAAACTGCTGGGTAATTTCTGT	59.107	37.500	0.00	0.00	0.00	3.41
927	977	6.279682	TCTGTTCCCTGGGACCTATATATACT	59.720	42.308	16.85	0.00	0.00	2.12
986	1036	1.003839	TCCCAGGTACAGCAAAGCG	60.004	57.895	0.00	0.00	0.00	4.68
1143	1193	0.876777	TCGACGTCGGCAACAACAAT	60.877	50.000	35.05	0.00	40.29	2.71
1314	1411	0.319900	TCACTTCCTTCAGCACGAGC	60.320	55.000	0.00	0.00	42.56	5.03
1325	1422	2.653448	CACGAGCTCGATCGGCAG	60.653	66.667	40.58	16.92	46.91	4.85
1336	1433	1.061131	CGATCGGCAGTGCTTAACAAG	59.939	52.381	16.11	0.00	0.00	3.16
1373	1470	2.517959	TGAACAGCTCAATTCCTTGGG	58.482	47.619	0.00	0.00	35.82	4.12
1502	1599	2.184579	GGCCGCTCAGTGGTACTC	59.815	66.667	6.03	0.00	35.34	2.59
1515	1612	5.421056	TCAGTGGTACTCCTACATTGTTAGG	59.579	44.000	0.00	0.59	34.83	2.69
1526	1623	8.086143	TCCTACATTGTTAGGCATTACTTACT	57.914	34.615	0.00	0.00	33.56	2.24
1587	1697	0.538057	ATGTGCAGGTTGGTGAGGTG	60.538	55.000	0.00	0.00	0.00	4.00
1740	1850	2.486472	TCGAGTACTCTTTCTCCCGT	57.514	50.000	20.34	0.00	0.00	5.28
1786	1896	3.338126	CTCGTCGCCGCCTACAAGT	62.338	63.158	0.00	0.00	0.00	3.16
1787	1897	2.431942	CGTCGCCGCCTACAAGTT	60.432	61.111	0.00	0.00	0.00	2.66
1788	1898	2.726691	CGTCGCCGCCTACAAGTTG	61.727	63.158	0.00	0.00	0.00	3.16
1808	1918	6.014647	AGTTGTATCTGAAGGTACCACTACA	58.985	40.000	15.94	9.50	28.50	2.74
1829	1942	8.314751	ACTACATAGTACTCAGCAAATCAGTTT	58.685	33.333	0.00	0.00	34.13	2.66
1898	2011	3.877508	AGAACTGCAAACTGAACCTGTAC	59.122	43.478	0.00	0.00	0.00	2.90
1907	2020	2.639839	ACTGAACCTGTACAATCCTGCT	59.360	45.455	0.00	0.00	0.00	4.24
2054	2167	3.141294	CGATCTCTCGCTTCAGTCG	57.859	57.895	0.00	0.00	38.20	4.18
2060	2173	0.322277	TCTCGCTTCAGTCGTACCCT	60.322	55.000	0.00	0.00	0.00	4.34
2061	2174	0.526662	CTCGCTTCAGTCGTACCCTT	59.473	55.000	0.00	0.00	0.00	3.95
2067	2180	1.045407	TCAGTCGTACCCTTTGCTGT	58.955	50.000	0.00	0.00	0.00	4.40
2076	2189	2.099062	CTTTGCTGTCCGCGATGC	59.901	61.111	8.23	6.67	43.27	3.91
2084	2197	3.074369	TCCGCGATGCTGGAGGAA	61.074	61.111	8.23	0.00	30.01	3.36
2165	2278	2.604174	CGTCTTCGCCAACCCACAC	61.604	63.158	0.00	0.00	0.00	3.82
2168	2281	1.821759	CTTCGCCAACCCACACACA	60.822	57.895	0.00	0.00	0.00	3.72
2169	2282	1.378646	TTCGCCAACCCACACACAA	60.379	52.632	0.00	0.00	0.00	3.33
2170	2283	0.965866	TTCGCCAACCCACACACAAA	60.966	50.000	0.00	0.00	0.00	2.83
2264	2377	0.323360	ATTTTGCCGGCCTGCTCTTA	60.323	50.000	26.77	0.00	0.00	2.10
2282	2395	3.068307	TCTTATAGGCTTCACGGAGCTTC	59.932	47.826	0.00	0.00	42.32	3.86
2785	4907	8.989131	AGAAATAGTAAAACTGAGCCACCTATA	58.011	33.333	0.00	0.00	0.00	1.31
2792	4914	1.141053	CTGAGCCACCTATAACCACCC	59.859	57.143	0.00	0.00	0.00	4.61
2803	4925	3.637911	ATAACCACCCACAGCGATTTA	57.362	42.857	0.00	0.00	0.00	1.40
2847	4969	0.539669	CCCACCGCTCCCTTTTTCTT	60.540	55.000	0.00	0.00	0.00	2.52
2856	4978	1.953686	TCCCTTTTTCTTGAGCGTTGG	59.046	47.619	0.00	0.00	0.00	3.77
2878	5000	6.392354	TGGTAACACCTTATTAACTCTCACG	58.608	40.000	0.00	0.00	46.17	4.35
2910	5035	6.764560	ACACCTTATTAACTCAACGACAAAGT	59.235	34.615	0.00	0.00	0.00	2.66
2942	5067	1.132453	CGACTGGTCATTAGCGACAGA	59.868	52.381	0.00	0.00	37.66	3.41
2946	5071	1.616374	TGGTCATTAGCGACAGACACA	59.384	47.619	0.00	0.00	37.66	3.72
2950	5075	1.386748	CATTAGCGACAGACACACACG	59.613	52.381	0.00	0.00	0.00	4.49
2957	5082	0.032130	ACAGACACACACGATTCGCT	59.968	50.000	5.86	0.00	0.00	4.93
2958	5083	0.710567	CAGACACACACGATTCGCTC	59.289	55.000	5.86	0.00	0.00	5.03
3029	5160	7.925703	TCGCTAGATACTTTATTTTTCGAGG	57.074	36.000	0.00	0.00	0.00	4.63
3073	5209	0.249699	ATCGAACACAGGACGCACAA	60.250	50.000	0.00	0.00	0.00	3.33
3114	5251	4.611355	CGACCAACAAGCTACAACATCTTG	60.611	45.833	0.00	0.00	41.99	3.02
3218	5356	1.189752	TTGCTGGGAGCTAGAGTCAG	58.810	55.000	0.00	0.00	42.97	3.51
3230	5368	4.774726	AGCTAGAGTCAGACTCCAAAATCA	59.225	41.667	24.62	3.48	46.18	2.57
3305	5447	4.270008	AGTACTTGCGCCAATTCCTAAAT	58.730	39.130	4.18	0.00	0.00	1.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	5.645624	TGCAAACTTCTTTCAAATTCGTGA	58.354	33.333	0.00	0.00	0.00	4.35
149	150	8.983724	TCAAATTCGTGAATAATTTTCAAACCC	58.016	29.630	0.00	0.00	35.00	4.11
167	168	5.881637	ACCACGAACAATTTTCAAATTCG	57.118	34.783	2.73	2.73	36.52	3.34
183	184	2.940410	GTGAACTTTCTGGAAACCACGA	59.060	45.455	0.00	0.00	0.00	4.35
195	196	8.643752	TGAACTTTTTCAAATTCGTGAACTTTC	58.356	29.630	0.00	0.00	38.87	2.62
335	338	5.699097	TCCGGTTTTGTGAAAATTCTAGG	57.301	39.130	0.00	0.00	32.22	3.02
342	345	4.927978	ACATCATCCGGTTTTGTGAAAA	57.072	36.364	0.00	0.00	0.00	2.29
469	494	0.038166	GCCTGGTCATCCCACTTTGA	59.962	55.000	0.00	0.00	38.72	2.69
485	531	2.108952	ACACTCAAAATCCTTCTGGCCT	59.891	45.455	3.32	0.00	0.00	5.19
486	532	2.489722	GACACTCAAAATCCTTCTGGCC	59.510	50.000	0.00	0.00	0.00	5.36
487	533	2.489722	GGACACTCAAAATCCTTCTGGC	59.510	50.000	0.00	0.00	0.00	4.85
488	534	3.755378	CAGGACACTCAAAATCCTTCTGG	59.245	47.826	0.00	0.00	41.07	3.86
489	535	4.214971	CACAGGACACTCAAAATCCTTCTG	59.785	45.833	0.00	0.00	41.07	3.02
490	536	4.392940	CACAGGACACTCAAAATCCTTCT	58.607	43.478	0.00	0.00	41.07	2.85
491	537	3.503748	CCACAGGACACTCAAAATCCTTC	59.496	47.826	0.00	0.00	41.07	3.46
492	538	3.117512	ACCACAGGACACTCAAAATCCTT	60.118	43.478	0.00	0.00	41.07	3.36
493	539	2.443255	ACCACAGGACACTCAAAATCCT	59.557	45.455	0.00	0.00	43.95	3.24
494	540	2.863809	ACCACAGGACACTCAAAATCC	58.136	47.619	0.00	0.00	0.00	3.01
495	541	3.437049	GCTACCACAGGACACTCAAAATC	59.563	47.826	0.00	0.00	0.00	2.17
496	542	3.181445	TGCTACCACAGGACACTCAAAAT	60.181	43.478	0.00	0.00	0.00	1.82
497	543	2.171659	TGCTACCACAGGACACTCAAAA	59.828	45.455	0.00	0.00	0.00	2.44
498	544	1.765904	TGCTACCACAGGACACTCAAA	59.234	47.619	0.00	0.00	0.00	2.69
499	545	1.344438	CTGCTACCACAGGACACTCAA	59.656	52.381	0.00	0.00	33.85	3.02
500	546	0.969149	CTGCTACCACAGGACACTCA	59.031	55.000	0.00	0.00	33.85	3.41
501	547	1.257743	TCTGCTACCACAGGACACTC	58.742	55.000	0.00	0.00	38.26	3.51
502	548	1.552337	CATCTGCTACCACAGGACACT	59.448	52.381	0.00	0.00	38.26	3.55
503	549	2.009042	GCATCTGCTACCACAGGACAC	61.009	57.143	0.00	0.00	38.26	3.67
504	550	0.250234	GCATCTGCTACCACAGGACA	59.750	55.000	0.00	0.00	38.26	4.02
505	551	3.071580	GCATCTGCTACCACAGGAC	57.928	57.895	0.00	0.00	38.26	3.85
583	629	1.394266	GCATGGGACCAAATCGGCAT	61.394	55.000	0.00	0.00	39.03	4.40
587	633	0.670162	GGATGCATGGGACCAAATCG	59.330	55.000	2.46	0.00	0.00	3.34
604	650	0.970937	CTTAGGACGGACCAGCTGGA	60.971	60.000	39.19	11.44	42.04	3.86
700	746	3.553095	AAGTCCGGGCCTGCAGAAC	62.553	63.158	17.39	6.73	0.00	3.01
774	821	8.691661	TTTAAAGAGGTTTGAAGCTGTAGAAT	57.308	30.769	0.00	0.00	36.78	2.40
900	950	2.426431	TAGGTCCCAGGGAACAGAAA	57.574	50.000	26.69	5.02	42.91	2.52
906	956	7.123560	TGAAGTATATATAGGTCCCAGGGAA	57.876	40.000	10.89	0.00	31.38	3.97
1005	1055	1.275856	ACGTATGAGGCGGTTTGGTTA	59.724	47.619	0.00	0.00	0.00	2.85
1101	1151	1.445582	GGAGTCGCCGAACACGAAT	60.446	57.895	0.00	0.00	41.93	3.34
1314	1411	0.924090	GTTAAGCACTGCCGATCGAG	59.076	55.000	18.66	9.65	0.00	4.04
1325	1422	5.049954	TCGAATGGTGTAACTTGTTAAGCAC	60.050	40.000	0.00	1.29	36.74	4.40
1336	1433	5.727791	GCTGTTCATCATCGAATGGTGTAAC	60.728	44.000	0.00	3.56	42.05	2.50
1502	1599	9.826574	TTAGTAAGTAATGCCTAACAATGTAGG	57.173	33.333	0.00	0.00	43.23	3.18
1533	1630	7.208225	TCATGTCATACGGTTGAAATGAAAA	57.792	32.000	16.17	0.21	43.92	2.29
1587	1697	1.070445	CTGCTGGGTCATCGGGATC	59.930	63.158	0.00	0.00	0.00	3.36
1740	1850	3.390135	CAAGAACTTCCTGTCGTTGCTA	58.610	45.455	0.00	0.00	0.00	3.49
1786	1896	7.837689	ACTATGTAGTGGTACCTTCAGATACAA	59.162	37.037	14.36	4.37	34.72	2.41
1787	1897	7.351952	ACTATGTAGTGGTACCTTCAGATACA	58.648	38.462	14.36	12.33	34.72	2.29
1788	1898	7.820578	ACTATGTAGTGGTACCTTCAGATAC	57.179	40.000	14.36	0.36	34.72	2.24
1829	1942	4.001618	TGAACACAACTGCATACTAGCA	57.998	40.909	0.00	0.00	43.35	3.49
1836	1949	2.816087	GTGGAGATGAACACAACTGCAT	59.184	45.455	0.00	0.00	37.20	3.96
1907	2020	1.489481	CCAGATGGTAGAGTGCCTGA	58.511	55.000	0.00	0.00	0.00	3.86
2048	2161	1.000506	GACAGCAAAGGGTACGACTGA	59.999	52.381	0.00	0.00	0.00	3.41
2050	2163	0.320697	GGACAGCAAAGGGTACGACT	59.679	55.000	0.00	0.00	0.00	4.18
2067	2180	3.074369	TTCCTCCAGCATCGCGGA	61.074	61.111	6.13	0.00	32.49	5.54
2076	2189	2.352805	GTGGGCCAGTTCCTCCAG	59.647	66.667	6.40	0.00	0.00	3.86
2165	2278	2.479837	TGCTTACTCCAGTCGTTTGTG	58.520	47.619	0.00	0.00	0.00	3.33
2168	2281	3.432252	CGATTTGCTTACTCCAGTCGTTT	59.568	43.478	0.00	0.00	0.00	3.60
2169	2282	2.993899	CGATTTGCTTACTCCAGTCGTT	59.006	45.455	0.00	0.00	0.00	3.85
2170	2283	2.607187	CGATTTGCTTACTCCAGTCGT	58.393	47.619	0.00	0.00	0.00	4.34
2264	2377	1.137872	CTGAAGCTCCGTGAAGCCTAT	59.862	52.381	0.00	0.00	43.56	2.57
2553	2672	5.895534	TGATTACCCGGTAGCCCTATATTAG	59.104	44.000	0.00	0.00	0.00	1.73
2708	4824	5.768980	TTGAGAGACTCTTCCAAATCCAT	57.231	39.130	6.40	0.00	0.00	3.41
2785	4907	2.159382	CTTAAATCGCTGTGGGTGGTT	58.841	47.619	0.00	0.00	0.00	3.67
2792	4914	0.026803	GCCGAGCTTAAATCGCTGTG	59.973	55.000	4.60	0.00	37.96	3.66
2847	4969	3.688694	ATAAGGTGTTACCAACGCTCA	57.311	42.857	0.28	0.00	41.95	4.26
2856	4978	8.524870	TTTCGTGAGAGTTAATAAGGTGTTAC	57.475	34.615	0.00	0.00	43.69	2.50
2910	5035	2.568062	TGACCAGTCGGCAGGTATTTAA	59.432	45.455	3.22	0.00	38.50	1.52
2942	5067	3.842602	CGAGCGAATCGTGTGTGT	58.157	55.556	4.07	0.00	46.62	3.72
2966	5091	1.444553	GGATCGGTCGATGCGGATC	60.445	63.158	10.77	6.88	41.52	3.36
2967	5092	2.200337	TGGATCGGTCGATGCGGAT	61.200	57.895	17.31	0.00	44.35	4.18
2968	5093	2.831284	TGGATCGGTCGATGCGGA	60.831	61.111	17.31	1.45	44.35	5.54
2969	5094	2.658593	GTGGATCGGTCGATGCGG	60.659	66.667	17.31	0.00	44.35	5.69
2970	5095	3.024609	CGTGGATCGGTCGATGCG	61.025	66.667	17.31	11.78	44.35	4.73
2971	5096	1.480219	GAACGTGGATCGGTCGATGC	61.480	60.000	16.05	16.05	46.27	3.91
2972	5097	2.578369	GAACGTGGATCGGTCGATG	58.422	57.895	10.77	0.00	46.27	3.84
2977	5102	1.930908	GAGGTCGAACGTGGATCGGT	61.931	60.000	8.16	0.00	44.57	4.69
2978	5103	1.226603	GAGGTCGAACGTGGATCGG	60.227	63.158	8.16	0.00	44.69	4.18
3061	5197	2.031163	GGAGCTTGTGCGTCCTGT	59.969	61.111	0.00	0.00	45.42	4.00
3114	5251	7.262048	TCTTATGTTTTCCAGTTTGAACAACC	58.738	34.615	0.00	0.00	35.83	3.77
3218	5356	6.360681	CGTCACAATTCTTTGATTTTGGAGTC	59.639	38.462	0.00	0.00	36.64	3.36
3230	5368	3.485463	TGTCCCTCGTCACAATTCTTT	57.515	42.857	0.00	0.00	0.00	2.52
3305	5447	1.817357	TCGCTAACTTCCAGTCGAGA	58.183	50.000	0.00	0.00	0.00	4.04
3407	5549	3.857038	GGGCCAGCGTCGGGATAA	61.857	66.667	4.39	0.00	0.00	1.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.