Multiple sequence alignment - TraesCS6B01G272300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G272300 chr6B 100.000 5382 0 0 1 5382 491619984 491625365 0.000000e+00 9939.0
1 TraesCS6B01G272300 chr6B 91.312 564 39 7 4823 5382 48484749 48485306 0.000000e+00 761.0
2 TraesCS6B01G272300 chr6D 92.141 1616 69 28 1 1564 327634700 327636309 0.000000e+00 2228.0
3 TraesCS6B01G272300 chr6D 93.803 952 49 8 2865 3810 327637672 327638619 0.000000e+00 1423.0
4 TraesCS6B01G272300 chr6D 92.615 1002 47 6 3892 4868 327638618 327639617 0.000000e+00 1415.0
5 TraesCS6B01G272300 chr6D 93.109 653 39 4 1813 2464 327636462 327637109 0.000000e+00 952.0
6 TraesCS6B01G272300 chr6D 84.577 402 35 14 2499 2876 327637111 327637509 1.830000e-99 374.0
7 TraesCS6B01G272300 chr6D 96.552 87 3 0 3809 3895 168293755 168293841 1.560000e-30 145.0
8 TraesCS6B01G272300 chr6D 87.838 74 7 2 4667 4738 58245382 58245455 9.600000e-13 86.1
9 TraesCS6B01G272300 chr6D 83.516 91 13 2 4648 4736 269125547 269125457 3.450000e-12 84.2
10 TraesCS6B01G272300 chr6A 94.605 1075 41 5 2748 3810 466692357 466693426 0.000000e+00 1648.0
11 TraesCS6B01G272300 chr6A 93.314 1017 43 14 573 1564 466687671 466688687 0.000000e+00 1478.0
12 TraesCS6B01G272300 chr6A 92.547 966 40 8 3892 4827 466693425 466694388 0.000000e+00 1356.0
13 TraesCS6B01G272300 chr6A 92.936 637 29 10 1705 2338 466688760 466689383 0.000000e+00 913.0
14 TraesCS6B01G272300 chr6A 94.286 315 14 3 269 582 466675578 466675889 3.770000e-131 479.0
15 TraesCS6B01G272300 chr6A 94.186 258 12 3 2498 2753 466689740 466689996 1.820000e-104 390.0
16 TraesCS6B01G272300 chr6A 93.377 151 8 1 86 236 466669981 466670129 7.020000e-54 222.0
17 TraesCS6B01G272300 chr6A 90.000 80 6 2 4660 4737 299985042 299985121 9.540000e-18 102.0
18 TraesCS6B01G272300 chr6A 88.889 72 6 2 4667 4736 73561999 73562070 2.670000e-13 87.9
19 TraesCS6B01G272300 chr2B 92.185 563 42 2 4821 5382 294041047 294041608 0.000000e+00 795.0
20 TraesCS6B01G272300 chr2B 91.489 564 39 7 4823 5382 329485892 329485334 0.000000e+00 767.0
21 TraesCS6B01G272300 chr2B 92.683 41 1 2 2451 2490 705874384 705874345 2.090000e-04 58.4
22 TraesCS6B01G272300 chr7A 91.504 565 39 6 4822 5382 424539521 424540080 0.000000e+00 769.0
23 TraesCS6B01G272300 chr3B 91.504 565 39 6 4822 5382 215611515 215612074 0.000000e+00 769.0
24 TraesCS6B01G272300 chr3B 100.000 31 0 0 2460 2490 426827203 426827173 2.090000e-04 58.4
25 TraesCS6B01G272300 chr3B 97.059 34 0 1 2463 2495 214569549 214569516 7.530000e-04 56.5
26 TraesCS6B01G272300 chr4D 91.459 562 43 3 4821 5380 235492971 235492413 0.000000e+00 767.0
27 TraesCS6B01G272300 chr4D 100.000 31 0 0 2460 2490 310628770 310628740 2.090000e-04 58.4
28 TraesCS6B01G272300 chr7B 91.327 565 40 6 4822 5382 169303235 169302676 0.000000e+00 763.0
29 TraesCS6B01G272300 chr7B 100.000 31 0 0 2460 2490 172805406 172805436 2.090000e-04 58.4
30 TraesCS6B01G272300 chr1B 91.312 564 40 6 4823 5382 242241550 242242108 0.000000e+00 761.0
31 TraesCS6B01G272300 chr1B 100.000 31 0 0 2460 2490 178450535 178450565 2.090000e-04 58.4
32 TraesCS6B01G272300 chr1A 91.312 564 40 6 4823 5382 252506531 252507089 0.000000e+00 761.0
33 TraesCS6B01G272300 chr1A 100.000 31 0 0 2460 2490 419008871 419008901 2.090000e-04 58.4
34 TraesCS6B01G272300 chr3D 96.629 89 3 0 3809 3897 384726625 384726713 1.210000e-31 148.0
35 TraesCS6B01G272300 chr3D 94.382 89 5 0 3809 3897 303788457 303788545 2.610000e-28 137.0
36 TraesCS6B01G272300 chr5D 95.604 91 4 0 3807 3897 109535626 109535536 4.340000e-31 147.0
37 TraesCS6B01G272300 chr5D 95.604 91 4 0 3807 3897 112843012 112842922 4.340000e-31 147.0
38 TraesCS6B01G272300 chr2A 96.552 87 3 0 3808 3894 498099528 498099442 1.560000e-30 145.0
39 TraesCS6B01G272300 chr2A 89.189 74 4 4 4667 4737 40444829 40444901 7.420000e-14 89.8
40 TraesCS6B01G272300 chr1D 95.556 90 4 0 3804 3893 80001492 80001403 1.560000e-30 145.0
41 TraesCS6B01G272300 chr1D 84.706 85 9 4 4658 4738 467003817 467003733 1.240000e-11 82.4
42 TraesCS6B01G272300 chr1D 100.000 28 0 0 1434 1461 458160460 458160433 1.000000e-02 52.8
43 TraesCS6B01G272300 chr7D 94.565 92 5 0 3805 3896 116592588 116592497 5.620000e-30 143.0
44 TraesCS6B01G272300 chr7D 95.402 87 4 0 3809 3895 289566437 289566351 7.270000e-29 139.0
45 TraesCS6B01G272300 chr4B 91.549 71 4 2 4670 4738 270831745 270831675 4.440000e-16 97.1
46 TraesCS6B01G272300 chrUn 100.000 31 0 0 2460 2490 388759639 388759609 2.090000e-04 58.4
47 TraesCS6B01G272300 chrUn 100.000 31 0 0 2460 2490 390043974 390044004 2.090000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G272300 chr6B 491619984 491625365 5381 False 9939.0 9939 100.0000 1 5382 1 chr6B.!!$F2 5381
1 TraesCS6B01G272300 chr6B 48484749 48485306 557 False 761.0 761 91.3120 4823 5382 1 chr6B.!!$F1 559
2 TraesCS6B01G272300 chr6D 327634700 327639617 4917 False 1278.4 2228 91.2490 1 4868 5 chr6D.!!$F3 4867
3 TraesCS6B01G272300 chr6A 466687671 466694388 6717 False 1157.0 1648 93.5176 573 4827 5 chr6A.!!$F5 4254
4 TraesCS6B01G272300 chr2B 294041047 294041608 561 False 795.0 795 92.1850 4821 5382 1 chr2B.!!$F1 561
5 TraesCS6B01G272300 chr2B 329485334 329485892 558 True 767.0 767 91.4890 4823 5382 1 chr2B.!!$R1 559
6 TraesCS6B01G272300 chr7A 424539521 424540080 559 False 769.0 769 91.5040 4822 5382 1 chr7A.!!$F1 560
7 TraesCS6B01G272300 chr3B 215611515 215612074 559 False 769.0 769 91.5040 4822 5382 1 chr3B.!!$F1 560
8 TraesCS6B01G272300 chr4D 235492413 235492971 558 True 767.0 767 91.4590 4821 5380 1 chr4D.!!$R1 559
9 TraesCS6B01G272300 chr7B 169302676 169303235 559 True 763.0 763 91.3270 4822 5382 1 chr7B.!!$R1 560
10 TraesCS6B01G272300 chr1B 242241550 242242108 558 False 761.0 761 91.3120 4823 5382 1 chr1B.!!$F2 559
11 TraesCS6B01G272300 chr1A 252506531 252507089 558 False 761.0 761 91.3120 4823 5382 1 chr1A.!!$F1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 356 0.165079 CCGTTGTATCGTGTGCAACC 59.835 55.0 14.67 0.00 46.73 3.77 F
1465 1523 1.018148 TTATATTGGCGTGCAACCGG 58.982 50.0 0.00 0.00 0.00 5.28 F
1859 1948 0.323725 GACTGGGCCCATGTGTCATT 60.324 55.0 29.02 8.22 0.00 2.57 F
3306 6223 0.404040 TTGTTGGGCTGTTAGGAGGG 59.596 55.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1576 1634 0.163788 CTGCTGTTGAACCGTAAGCG 59.836 55.000 0.0 0.0 36.66 4.68 R
3155 6072 0.250234 TACGCTTGCAGCCTTGATCT 59.750 50.000 0.0 0.0 38.18 2.75 R
3416 6333 0.880278 ACGACCATGCGATGCCATAC 60.880 55.000 0.0 0.0 34.83 2.39 R
5042 7999 1.078848 GTGCCATCGGAGCTTCAGT 60.079 57.895 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.021822 CGATCCGTGTTGAATGATTTTCG 58.978 43.478 0.00 0.00 0.00 3.46
40 41 1.374252 GCGGTCCAGACACGAATGT 60.374 57.895 11.27 0.00 43.71 2.71
42 43 1.909376 CGGTCCAGACACGAATGTAG 58.091 55.000 0.00 0.00 39.95 2.74
48 49 0.606604 AGACACGAATGTAGGCGGTT 59.393 50.000 0.00 0.00 39.95 4.44
58 59 1.698532 TGTAGGCGGTTTAAAGGGTCA 59.301 47.619 0.00 0.00 0.00 4.02
62 63 1.500396 CGGTTTAAAGGGTCAGCGC 59.500 57.895 0.00 0.00 0.00 5.92
63 64 0.953960 CGGTTTAAAGGGTCAGCGCT 60.954 55.000 2.64 2.64 39.77 5.92
83 84 3.370527 GCTGGAGATGCCCTAACTGTAAA 60.371 47.826 0.00 0.00 34.97 2.01
84 85 4.843728 CTGGAGATGCCCTAACTGTAAAA 58.156 43.478 0.00 0.00 34.97 1.52
88 103 5.338463 GGAGATGCCCTAACTGTAAAACTCT 60.338 44.000 0.00 0.00 0.00 3.24
156 171 8.892723 TGTAATCTTGCTGGTTAATCAATGTAG 58.107 33.333 0.00 0.00 0.00 2.74
158 173 4.640201 TCTTGCTGGTTAATCAATGTAGGC 59.360 41.667 0.00 0.00 0.00 3.93
159 174 4.235079 TGCTGGTTAATCAATGTAGGCT 57.765 40.909 0.00 0.00 0.00 4.58
160 175 4.199310 TGCTGGTTAATCAATGTAGGCTC 58.801 43.478 0.00 0.00 0.00 4.70
162 177 4.693283 CTGGTTAATCAATGTAGGCTCGA 58.307 43.478 0.00 0.00 0.00 4.04
164 179 5.056480 TGGTTAATCAATGTAGGCTCGATG 58.944 41.667 0.00 0.00 0.00 3.84
165 180 5.163353 TGGTTAATCAATGTAGGCTCGATGA 60.163 40.000 0.00 0.00 0.00 2.92
166 181 5.177696 GGTTAATCAATGTAGGCTCGATGAC 59.822 44.000 0.00 0.00 0.00 3.06
169 184 3.023832 TCAATGTAGGCTCGATGACTGA 58.976 45.455 0.00 0.00 34.56 3.41
183 200 3.771577 TGACTGAGAGGAAAAGAACCC 57.228 47.619 0.00 0.00 0.00 4.11
185 202 3.652869 TGACTGAGAGGAAAAGAACCCAT 59.347 43.478 0.00 0.00 0.00 4.00
214 231 1.334239 GGCTACTCTAGACGCGACATG 60.334 57.143 15.93 3.53 0.00 3.21
252 269 2.776526 AGCACACCACAAGGGGGA 60.777 61.111 0.00 0.00 46.16 4.81
257 274 0.697854 ACACCACAAGGGGGACTTCT 60.698 55.000 0.00 0.00 46.16 2.85
320 345 2.582436 CACCTCCGCCCGTTGTAT 59.418 61.111 0.00 0.00 0.00 2.29
331 356 0.165079 CCGTTGTATCGTGTGCAACC 59.835 55.000 14.67 0.00 46.73 3.77
373 399 1.913951 AAGTGCGCCCCATGATCAGA 61.914 55.000 4.18 0.00 0.00 3.27
463 489 1.145119 ACCCTTCCAAGAGTTCCAACC 59.855 52.381 0.00 0.00 0.00 3.77
474 500 1.527380 TTCCAACCCCGCAAGTCAC 60.527 57.895 0.00 0.00 0.00 3.67
496 522 1.396653 CCAAGATCCAATCAGCCACC 58.603 55.000 0.00 0.00 0.00 4.61
648 682 3.390521 CACCACTAGCCAGCCGGA 61.391 66.667 5.05 0.00 0.00 5.14
673 707 3.025176 GCGTACTCGGCAGATCGC 61.025 66.667 12.86 12.86 37.78 4.58
687 721 1.065701 AGATCGCACACTAAGCCGTAG 59.934 52.381 0.00 0.00 35.75 3.51
758 792 2.652313 CCACCTTGGCGAAAATGGA 58.348 52.632 5.05 0.00 0.00 3.41
780 814 1.520787 GTCGCCGTTAGTGATGGGG 60.521 63.158 3.98 3.98 46.13 4.96
788 822 2.028476 CGTTAGTGATGGGGTCAGTCAA 60.028 50.000 0.00 0.00 40.87 3.18
885 920 1.987704 TTGCTTTGTCGTTGCGTGCT 61.988 50.000 0.00 0.00 0.00 4.40
1011 1049 2.452105 GCGTACGAGATGAAGGACTTC 58.548 52.381 21.65 5.14 39.91 3.01
1206 1244 1.140312 TTGCCTGGACCTTCTTCTGT 58.860 50.000 0.00 0.00 0.00 3.41
1207 1245 1.140312 TGCCTGGACCTTCTTCTGTT 58.860 50.000 0.00 0.00 0.00 3.16
1277 1323 3.625745 GGTGGTGACTCCGATTGTT 57.374 52.632 0.00 0.00 39.52 2.83
1384 1436 1.735920 GTCTGCTCTGCACCGTGAG 60.736 63.158 1.65 0.00 33.79 3.51
1385 1437 2.203082 TCTGCTCTGCACCGTGAGT 61.203 57.895 1.65 0.00 33.79 3.41
1465 1523 1.018148 TTATATTGGCGTGCAACCGG 58.982 50.000 0.00 0.00 0.00 5.28
1485 1543 2.079925 GTCGGAGGTGTACTTCTACGT 58.920 52.381 16.27 0.00 38.40 3.57
1564 1622 2.671396 CTCGCTTGCTTACGTGGTAAAT 59.329 45.455 0.00 0.00 0.00 1.40
1565 1623 3.068560 TCGCTTGCTTACGTGGTAAATT 58.931 40.909 0.00 0.00 0.00 1.82
1566 1624 4.244066 TCGCTTGCTTACGTGGTAAATTA 58.756 39.130 0.00 0.00 0.00 1.40
1567 1625 4.689812 TCGCTTGCTTACGTGGTAAATTAA 59.310 37.500 0.00 0.00 0.00 1.40
1568 1626 5.352016 TCGCTTGCTTACGTGGTAAATTAAT 59.648 36.000 0.00 0.00 0.00 1.40
1569 1627 6.534436 TCGCTTGCTTACGTGGTAAATTAATA 59.466 34.615 0.00 0.00 0.00 0.98
1570 1628 6.626095 CGCTTGCTTACGTGGTAAATTAATAC 59.374 38.462 0.00 0.00 0.00 1.89
1571 1629 7.465989 GCTTGCTTACGTGGTAAATTAATACA 58.534 34.615 0.00 0.00 0.00 2.29
1572 1630 7.638683 GCTTGCTTACGTGGTAAATTAATACAG 59.361 37.037 0.00 0.00 0.00 2.74
1573 1631 8.550710 TTGCTTACGTGGTAAATTAATACAGT 57.449 30.769 0.00 0.00 0.00 3.55
1574 1632 9.650539 TTGCTTACGTGGTAAATTAATACAGTA 57.349 29.630 0.00 0.00 0.00 2.74
1575 1633 9.820725 TGCTTACGTGGTAAATTAATACAGTAT 57.179 29.630 0.00 0.00 0.00 2.12
1578 1636 7.398834 ACGTGGTAAATTAATACAGTATCGC 57.601 36.000 0.00 0.00 0.00 4.58
1579 1637 7.205297 ACGTGGTAAATTAATACAGTATCGCT 58.795 34.615 0.00 0.00 0.00 4.93
1580 1638 7.707893 ACGTGGTAAATTAATACAGTATCGCTT 59.292 33.333 0.00 0.00 0.00 4.68
1581 1639 9.184062 CGTGGTAAATTAATACAGTATCGCTTA 57.816 33.333 0.00 0.00 0.00 3.09
1583 1641 9.184062 TGGTAAATTAATACAGTATCGCTTACG 57.816 33.333 0.00 0.00 42.01 3.18
1584 1642 8.642020 GGTAAATTAATACAGTATCGCTTACGG 58.358 37.037 0.00 0.00 40.63 4.02
1585 1643 9.185192 GTAAATTAATACAGTATCGCTTACGGT 57.815 33.333 0.00 6.44 41.33 4.83
1586 1644 8.652810 AAATTAATACAGTATCGCTTACGGTT 57.347 30.769 6.49 0.00 39.51 4.44
1587 1645 7.864307 ATTAATACAGTATCGCTTACGGTTC 57.136 36.000 6.49 0.00 39.51 3.62
1592 1650 3.303495 CAGTATCGCTTACGGTTCAACAG 59.697 47.826 0.00 0.00 40.63 3.16
1599 1657 3.062234 GCTTACGGTTCAACAGCAGATAC 59.938 47.826 0.00 0.00 0.00 2.24
1602 1660 4.465632 ACGGTTCAACAGCAGATACATA 57.534 40.909 0.00 0.00 0.00 2.29
1603 1661 4.181578 ACGGTTCAACAGCAGATACATAC 58.818 43.478 0.00 0.00 0.00 2.39
1604 1662 4.180817 CGGTTCAACAGCAGATACATACA 58.819 43.478 0.00 0.00 0.00 2.29
1605 1663 4.032900 CGGTTCAACAGCAGATACATACAC 59.967 45.833 0.00 0.00 0.00 2.90
1607 1665 4.817318 TCAACAGCAGATACATACACCA 57.183 40.909 0.00 0.00 0.00 4.17
1608 1666 4.758688 TCAACAGCAGATACATACACCAG 58.241 43.478 0.00 0.00 0.00 4.00
1609 1667 4.222810 TCAACAGCAGATACATACACCAGT 59.777 41.667 0.00 0.00 0.00 4.00
1610 1668 4.392921 ACAGCAGATACATACACCAGTC 57.607 45.455 0.00 0.00 0.00 3.51
1613 1671 5.656859 ACAGCAGATACATACACCAGTCTAA 59.343 40.000 0.00 0.00 0.00 2.10
1614 1672 6.154534 ACAGCAGATACATACACCAGTCTAAA 59.845 38.462 0.00 0.00 0.00 1.85
1615 1673 7.041721 CAGCAGATACATACACCAGTCTAAAA 58.958 38.462 0.00 0.00 0.00 1.52
1616 1674 7.549134 CAGCAGATACATACACCAGTCTAAAAA 59.451 37.037 0.00 0.00 0.00 1.94
1617 1675 7.549488 AGCAGATACATACACCAGTCTAAAAAC 59.451 37.037 0.00 0.00 0.00 2.43
1618 1676 7.333423 GCAGATACATACACCAGTCTAAAAACA 59.667 37.037 0.00 0.00 0.00 2.83
1642 1700 4.236935 CACGAAATTCAAATGAGGGGTTG 58.763 43.478 0.00 0.00 0.00 3.77
1675 1733 8.926715 AAAAATCAAACACTCTTTGGTCTTAC 57.073 30.769 0.00 0.00 0.00 2.34
1676 1734 7.639113 AAATCAAACACTCTTTGGTCTTACA 57.361 32.000 0.00 0.00 0.00 2.41
1677 1735 7.639113 AATCAAACACTCTTTGGTCTTACAA 57.361 32.000 0.00 0.00 0.00 2.41
1678 1736 7.823745 ATCAAACACTCTTTGGTCTTACAAT 57.176 32.000 0.00 0.00 0.00 2.71
1679 1737 8.918202 ATCAAACACTCTTTGGTCTTACAATA 57.082 30.769 0.00 0.00 0.00 1.90
1680 1738 8.740123 TCAAACACTCTTTGGTCTTACAATAA 57.260 30.769 0.00 0.00 0.00 1.40
1681 1739 9.179909 TCAAACACTCTTTGGTCTTACAATAAA 57.820 29.630 0.00 0.00 0.00 1.40
1682 1740 9.965824 CAAACACTCTTTGGTCTTACAATAAAT 57.034 29.630 0.00 0.00 0.00 1.40
1683 1741 9.965824 AAACACTCTTTGGTCTTACAATAAATG 57.034 29.630 0.00 0.00 0.00 2.32
1684 1742 8.691661 ACACTCTTTGGTCTTACAATAAATGT 57.308 30.769 0.00 0.00 46.36 2.71
1685 1743 8.784043 ACACTCTTTGGTCTTACAATAAATGTC 58.216 33.333 0.00 0.00 42.70 3.06
1686 1744 9.003658 CACTCTTTGGTCTTACAATAAATGTCT 57.996 33.333 0.00 0.00 42.70 3.41
1687 1745 9.220767 ACTCTTTGGTCTTACAATAAATGTCTC 57.779 33.333 0.00 0.00 42.70 3.36
1688 1746 9.219603 CTCTTTGGTCTTACAATAAATGTCTCA 57.780 33.333 0.00 0.00 42.70 3.27
1689 1747 9.567776 TCTTTGGTCTTACAATAAATGTCTCAA 57.432 29.630 0.00 0.00 42.70 3.02
1690 1748 9.612620 CTTTGGTCTTACAATAAATGTCTCAAC 57.387 33.333 0.00 0.00 42.70 3.18
1691 1749 8.918202 TTGGTCTTACAATAAATGTCTCAACT 57.082 30.769 0.00 0.00 42.70 3.16
1692 1750 8.918202 TGGTCTTACAATAAATGTCTCAACTT 57.082 30.769 0.00 0.00 42.70 2.66
1693 1751 9.349713 TGGTCTTACAATAAATGTCTCAACTTT 57.650 29.630 0.00 0.00 42.70 2.66
1777 1841 3.740115 ACAGAAAGAACGTGCTTGGTAT 58.260 40.909 10.24 0.00 0.00 2.73
1778 1842 4.890088 ACAGAAAGAACGTGCTTGGTATA 58.110 39.130 10.24 0.00 0.00 1.47
1779 1843 4.689345 ACAGAAAGAACGTGCTTGGTATAC 59.311 41.667 10.24 0.00 0.00 1.47
1780 1844 4.688879 CAGAAAGAACGTGCTTGGTATACA 59.311 41.667 10.24 0.00 0.00 2.29
1781 1845 5.178623 CAGAAAGAACGTGCTTGGTATACAA 59.821 40.000 10.24 0.00 37.55 2.41
1782 1846 5.761234 AGAAAGAACGTGCTTGGTATACAAA 59.239 36.000 10.24 0.00 38.91 2.83
1783 1847 5.352643 AAGAACGTGCTTGGTATACAAAC 57.647 39.130 8.35 0.00 38.91 2.93
1784 1848 4.382291 AGAACGTGCTTGGTATACAAACA 58.618 39.130 5.01 0.00 38.91 2.83
1785 1849 4.817464 AGAACGTGCTTGGTATACAAACAA 59.183 37.500 5.01 0.00 36.95 2.83
1786 1850 5.297278 AGAACGTGCTTGGTATACAAACAAA 59.703 36.000 5.01 0.00 36.95 2.83
1787 1851 5.699097 ACGTGCTTGGTATACAAACAAAT 57.301 34.783 5.01 0.00 36.95 2.32
1788 1852 6.804770 ACGTGCTTGGTATACAAACAAATA 57.195 33.333 5.01 0.00 36.95 1.40
1789 1853 6.604930 ACGTGCTTGGTATACAAACAAATAC 58.395 36.000 5.01 2.09 36.95 1.89
1790 1854 5.730802 CGTGCTTGGTATACAAACAAATACG 59.269 40.000 5.01 9.10 36.95 3.06
1791 1855 6.025280 GTGCTTGGTATACAAACAAATACGG 58.975 40.000 5.01 0.00 36.95 4.02
1792 1856 5.938710 TGCTTGGTATACAAACAAATACGGA 59.061 36.000 5.01 0.00 38.91 4.69
1793 1857 6.600032 TGCTTGGTATACAAACAAATACGGAT 59.400 34.615 5.01 0.00 38.91 4.18
1794 1858 7.121463 TGCTTGGTATACAAACAAATACGGATT 59.879 33.333 5.01 0.00 38.91 3.01
1795 1859 7.971722 GCTTGGTATACAAACAAATACGGATTT 59.028 33.333 0.00 0.00 38.91 2.17
1796 1860 9.284594 CTTGGTATACAAACAAATACGGATTTG 57.715 33.333 27.80 27.80 44.14 2.32
1806 1870 6.102006 CAAATACGGATTTGTAAAGCGAGA 57.898 37.500 22.64 0.00 44.69 4.04
1807 1871 5.968387 AATACGGATTTGTAAAGCGAGAG 57.032 39.130 0.00 0.00 0.00 3.20
1808 1872 3.314541 ACGGATTTGTAAAGCGAGAGT 57.685 42.857 0.00 0.00 0.00 3.24
1809 1873 2.993899 ACGGATTTGTAAAGCGAGAGTG 59.006 45.455 0.00 0.00 0.00 3.51
1810 1874 2.993899 CGGATTTGTAAAGCGAGAGTGT 59.006 45.455 0.00 0.00 0.00 3.55
1811 1875 3.432252 CGGATTTGTAAAGCGAGAGTGTT 59.568 43.478 0.00 0.00 0.00 3.32
1815 1879 7.357303 GGATTTGTAAAGCGAGAGTGTTAAAA 58.643 34.615 0.00 0.00 0.00 1.52
1851 1940 2.085343 AACAAGCTGACTGGGCCCAT 62.085 55.000 28.82 16.16 0.00 4.00
1859 1948 0.323725 GACTGGGCCCATGTGTCATT 60.324 55.000 29.02 8.22 0.00 2.57
2303 2392 2.032528 TGAGGTTTCTGCTGCCCG 59.967 61.111 0.00 0.00 0.00 6.13
2326 2415 2.691011 GTGGTTGTGCCCTTTTTACTCA 59.309 45.455 0.00 0.00 36.04 3.41
2327 2416 2.955660 TGGTTGTGCCCTTTTTACTCAG 59.044 45.455 0.00 0.00 36.04 3.35
2351 2440 7.857885 CAGTTCTGAAAGTAACTGAAAATGGAC 59.142 37.037 9.08 0.00 46.00 4.02
2354 2443 6.486657 TCTGAAAGTAACTGAAAATGGACTGG 59.513 38.462 0.00 0.00 33.76 4.00
2356 2445 6.262273 TGAAAGTAACTGAAAATGGACTGGTC 59.738 38.462 0.00 0.00 0.00 4.02
2375 2464 3.469739 GTCCCTGTTCGAAAACTTACCA 58.530 45.455 0.00 0.00 36.30 3.25
2379 2649 3.303791 CCTGTTCGAAAACTTACCACAGC 60.304 47.826 0.00 0.00 36.30 4.40
2380 2650 3.271729 TGTTCGAAAACTTACCACAGCA 58.728 40.909 0.00 0.00 36.30 4.41
2382 2652 4.024387 TGTTCGAAAACTTACCACAGCATC 60.024 41.667 0.00 0.00 36.30 3.91
2385 2655 3.667960 CGAAAACTTACCACAGCATCTGC 60.668 47.826 0.00 0.00 42.49 4.26
2430 2747 4.592485 ACAATTTTGCCCACGTCAAATA 57.408 36.364 2.19 0.00 33.94 1.40
2464 2781 4.960938 CAACCCTGCAAGATAGCATACTA 58.039 43.478 0.00 0.00 44.68 1.82
2466 2783 4.227197 ACCCTGCAAGATAGCATACTACT 58.773 43.478 0.00 0.00 44.68 2.57
2467 2784 4.282195 ACCCTGCAAGATAGCATACTACTC 59.718 45.833 0.00 0.00 44.68 2.59
2468 2785 4.322349 CCCTGCAAGATAGCATACTACTCC 60.322 50.000 0.00 0.00 44.68 3.85
2469 2786 4.322349 CCTGCAAGATAGCATACTACTCCC 60.322 50.000 0.00 0.00 44.68 4.30
2470 2787 4.483950 TGCAAGATAGCATACTACTCCCT 58.516 43.478 0.00 0.00 40.11 4.20
2471 2788 4.524714 TGCAAGATAGCATACTACTCCCTC 59.475 45.833 0.00 0.00 40.11 4.30
2472 2789 4.770010 GCAAGATAGCATACTACTCCCTCT 59.230 45.833 0.00 0.00 0.00 3.69
2473 2790 5.336372 GCAAGATAGCATACTACTCCCTCTG 60.336 48.000 0.00 0.00 0.00 3.35
2474 2791 5.592587 AGATAGCATACTACTCCCTCTGT 57.407 43.478 0.00 0.00 0.00 3.41
2475 2792 5.566469 AGATAGCATACTACTCCCTCTGTC 58.434 45.833 0.00 0.00 0.00 3.51
2476 2793 2.952116 AGCATACTACTCCCTCTGTCC 58.048 52.381 0.00 0.00 0.00 4.02
2477 2794 1.964933 GCATACTACTCCCTCTGTCCC 59.035 57.143 0.00 0.00 0.00 4.46
2478 2795 2.690026 GCATACTACTCCCTCTGTCCCA 60.690 54.545 0.00 0.00 0.00 4.37
2479 2796 3.643237 CATACTACTCCCTCTGTCCCAA 58.357 50.000 0.00 0.00 0.00 4.12
2480 2797 2.715763 ACTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
2481 2798 2.986050 ACTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
2482 2799 3.532102 ACTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
2483 2800 4.695606 ACTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
2484 2801 5.098663 ACTACTCCCTCTGTCCCAAAATAA 58.901 41.667 0.00 0.00 0.00 1.40
2485 2802 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
2486 2803 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
2487 2804 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
2488 2805 3.913799 TCCCTCTGTCCCAAAATAAGTGA 59.086 43.478 0.00 0.00 0.00 3.41
2489 2806 4.010349 CCCTCTGTCCCAAAATAAGTGAC 58.990 47.826 0.00 0.00 0.00 3.67
2490 2807 3.684788 CCTCTGTCCCAAAATAAGTGACG 59.315 47.826 0.00 0.00 0.00 4.35
2491 2808 3.670625 TCTGTCCCAAAATAAGTGACGG 58.329 45.455 0.00 0.00 34.40 4.79
2492 2809 2.747446 CTGTCCCAAAATAAGTGACGGG 59.253 50.000 0.00 0.00 34.81 5.28
2493 2810 2.089201 GTCCCAAAATAAGTGACGGGG 58.911 52.381 0.00 0.00 34.25 5.73
2494 2811 1.986631 TCCCAAAATAAGTGACGGGGA 59.013 47.619 0.00 0.00 40.67 4.81
2495 2812 2.026636 TCCCAAAATAAGTGACGGGGAG 60.027 50.000 0.00 0.00 38.16 4.30
2496 2813 2.290705 CCCAAAATAAGTGACGGGGAGT 60.291 50.000 0.00 0.00 36.14 3.85
2501 2818 6.400568 CAAAATAAGTGACGGGGAGTACTTA 58.599 40.000 0.00 0.00 39.22 2.24
2552 2869 1.438651 TTGCTGATGTGCGGTTACTC 58.561 50.000 0.00 0.00 35.36 2.59
2682 3005 7.121168 TCTCATGTCCAAGTTGACCATTATTTC 59.879 37.037 3.87 0.00 34.25 2.17
2721 3044 7.094205 GCAAGGATCAAAATTCAGAAGTCCTAA 60.094 37.037 0.00 0.00 33.93 2.69
2728 3052 8.786898 TCAAAATTCAGAAGTCCTAATGTTCAG 58.213 33.333 0.00 0.00 0.00 3.02
2823 5550 6.932356 ATCATCAGTACACTATTTTGGCAG 57.068 37.500 0.00 0.00 0.00 4.85
2856 5583 1.783071 ACGGACCCCACAATTGTTTT 58.217 45.000 8.77 0.00 0.00 2.43
3003 5911 1.372128 CCTGAAAGCGCAGTTTGGC 60.372 57.895 11.47 0.00 34.06 4.52
3073 5981 3.181461 GGGAATGATCTCACAGGTACCAG 60.181 52.174 15.94 9.05 0.00 4.00
3092 6000 4.019321 ACCAGTACCATTGTAACTGCAGAT 60.019 41.667 23.35 12.06 30.89 2.90
3306 6223 0.404040 TTGTTGGGCTGTTAGGAGGG 59.596 55.000 0.00 0.00 0.00 4.30
3324 6241 1.611673 GGGTGCACTCATGTAACAGCT 60.612 52.381 17.98 0.00 33.33 4.24
3381 6298 7.231925 AGTTTTTAGGATACCACGGTTTTGATT 59.768 33.333 0.00 0.00 37.17 2.57
3521 6438 4.694982 TGTCGACACAGCATCAACAATAAT 59.305 37.500 15.76 0.00 0.00 1.28
3614 6533 2.112998 AGGTGCCATATTTTGCTGCAT 58.887 42.857 1.84 0.00 34.04 3.96
3676 6595 4.081476 AGCCATATTTTGCTCACCTTTTCC 60.081 41.667 0.00 0.00 30.33 3.13
3683 6602 2.306847 TGCTCACCTTTTCCCTTTCAC 58.693 47.619 0.00 0.00 0.00 3.18
3684 6603 2.091885 TGCTCACCTTTTCCCTTTCACT 60.092 45.455 0.00 0.00 0.00 3.41
3685 6604 2.959030 GCTCACCTTTTCCCTTTCACTT 59.041 45.455 0.00 0.00 0.00 3.16
3686 6605 3.004839 GCTCACCTTTTCCCTTTCACTTC 59.995 47.826 0.00 0.00 0.00 3.01
3749 6672 7.973048 ACTTCTGTAGATAAGGACCAATGTA 57.027 36.000 0.00 0.00 0.00 2.29
3758 6681 8.000780 AGATAAGGACCAATGTATCAAAAAGC 57.999 34.615 0.00 0.00 0.00 3.51
3808 6731 6.318648 TGACTAGTTGCTGATGTTTGTCTTTT 59.681 34.615 0.00 0.00 0.00 2.27
3809 6732 7.497579 TGACTAGTTGCTGATGTTTGTCTTTTA 59.502 33.333 0.00 0.00 0.00 1.52
3810 6733 7.639945 ACTAGTTGCTGATGTTTGTCTTTTAC 58.360 34.615 0.00 0.00 0.00 2.01
3811 6734 6.699575 AGTTGCTGATGTTTGTCTTTTACT 57.300 33.333 0.00 0.00 0.00 2.24
3812 6735 6.729187 AGTTGCTGATGTTTGTCTTTTACTC 58.271 36.000 0.00 0.00 0.00 2.59
3813 6736 5.689383 TGCTGATGTTTGTCTTTTACTCC 57.311 39.130 0.00 0.00 0.00 3.85
3814 6737 4.518970 TGCTGATGTTTGTCTTTTACTCCC 59.481 41.667 0.00 0.00 0.00 4.30
3815 6738 4.762251 GCTGATGTTTGTCTTTTACTCCCT 59.238 41.667 0.00 0.00 0.00 4.20
3816 6739 5.106515 GCTGATGTTTGTCTTTTACTCCCTC 60.107 44.000 0.00 0.00 0.00 4.30
3817 6740 5.313712 TGATGTTTGTCTTTTACTCCCTCC 58.686 41.667 0.00 0.00 0.00 4.30
3818 6741 3.735591 TGTTTGTCTTTTACTCCCTCCG 58.264 45.455 0.00 0.00 0.00 4.63
3819 6742 3.135167 TGTTTGTCTTTTACTCCCTCCGT 59.865 43.478 0.00 0.00 0.00 4.69
3820 6743 3.672767 TTGTCTTTTACTCCCTCCGTC 57.327 47.619 0.00 0.00 0.00 4.79
3821 6744 1.897802 TGTCTTTTACTCCCTCCGTCC 59.102 52.381 0.00 0.00 0.00 4.79
3822 6745 1.206610 GTCTTTTACTCCCTCCGTCCC 59.793 57.143 0.00 0.00 0.00 4.46
3823 6746 1.203212 TCTTTTACTCCCTCCGTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
3824 6747 1.838077 CTTTTACTCCCTCCGTCCCAT 59.162 52.381 0.00 0.00 0.00 4.00
3825 6748 2.852714 TTTACTCCCTCCGTCCCATA 57.147 50.000 0.00 0.00 0.00 2.74
3826 6749 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
3827 6750 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
3828 6751 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
3829 6752 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3830 6753 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3831 6754 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3832 6755 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3833 6756 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3834 6757 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3835 6758 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3836 6759 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3837 6760 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3838 6761 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3839 6762 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3840 6763 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3841 6764 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3842 6765 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
3843 6766 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3844 6767 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
3845 6768 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3846 6769 8.567948 CCCATAATATAAGAGCGTTTTTGACAT 58.432 33.333 0.00 0.00 0.00 3.06
3847 6770 9.950680 CCATAATATAAGAGCGTTTTTGACATT 57.049 29.630 0.00 0.00 0.00 2.71
3855 6778 8.773404 AAGAGCGTTTTTGACATTAGTATAGT 57.227 30.769 0.00 0.00 0.00 2.12
3856 6779 8.186178 AGAGCGTTTTTGACATTAGTATAGTG 57.814 34.615 0.00 0.00 34.08 2.74
3857 6780 7.817962 AGAGCGTTTTTGACATTAGTATAGTGT 59.182 33.333 0.00 0.00 44.70 3.55
3858 6781 8.991243 AGCGTTTTTGACATTAGTATAGTGTA 57.009 30.769 0.00 0.00 41.90 2.90
3859 6782 9.426837 AGCGTTTTTGACATTAGTATAGTGTAA 57.573 29.630 0.00 0.00 41.90 2.41
3884 6807 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
3885 6808 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
3886 6809 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
3887 6810 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
3888 6811 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3889 6812 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
3890 6813 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4027 6950 2.028930 AGCTCCACTTGTCTTTACTCCG 60.029 50.000 0.00 0.00 0.00 4.63
4050 6973 5.106830 CGTTGACAGGTAAGGGAACATAAAC 60.107 44.000 0.00 0.00 0.00 2.01
4059 6982 7.345392 AGGTAAGGGAACATAAACTAACGGATA 59.655 37.037 0.00 0.00 0.00 2.59
4084 7007 4.600062 AGTTTTGTCAGTCTTGGTTTCCT 58.400 39.130 0.00 0.00 0.00 3.36
4127 7050 6.507023 ACCAATCATCTTGTTTTCTTGTGTC 58.493 36.000 0.00 0.00 0.00 3.67
4207 7130 1.808343 GCTGGTTTTTGTACGGTAGGG 59.192 52.381 0.00 0.00 0.00 3.53
4388 7318 3.548214 GCATGAGCAAGCATGACATACAG 60.548 47.826 15.58 0.00 46.64 2.74
4438 7368 3.008835 TGCTTCCAGGAGAATGAATGG 57.991 47.619 0.00 0.00 32.82 3.16
4498 7428 0.379669 CTGCAGATGTCGAATTGGGC 59.620 55.000 8.42 0.00 0.00 5.36
4517 7470 2.093606 GGCAGTAAACCTCCTACTGTCC 60.094 54.545 10.71 8.85 43.26 4.02
4818 7775 2.499289 AGCACTGGATAGAGGAAGTGTG 59.501 50.000 3.85 0.00 41.65 3.82
4841 7798 6.694411 GTGGCTTGTTATGAAATGAGCTTATG 59.306 38.462 0.00 0.00 0.00 1.90
4944 7901 3.149196 CAGCACAACACCCTGTTCTAAT 58.851 45.455 0.00 0.00 38.77 1.73
4948 7905 4.806286 GCACAACACCCTGTTCTAATACCT 60.806 45.833 0.00 0.00 38.77 3.08
5055 8012 3.944476 AGCAAACTGAAGCTCCGAT 57.056 47.368 0.00 0.00 36.00 4.18
5075 8032 1.915489 TGGCACATACTGAAGGGTCAT 59.085 47.619 0.00 0.00 31.85 3.06
5092 8049 3.471680 GTCATAATCCTCTCTTGCACCC 58.528 50.000 0.00 0.00 0.00 4.61
5098 8055 0.539051 CCTCTCTTGCACCCGAGAAT 59.461 55.000 9.89 0.00 35.99 2.40
5120 8077 3.012518 GCATGTAGAAGGCATCAACACT 58.987 45.455 0.00 0.00 0.00 3.55
5175 8132 3.818787 GCAATGCTGAGTGCCCCG 61.819 66.667 0.00 0.00 37.20 5.73
5265 8223 3.866066 GCCAAGTAATCTCTGCAGTCACA 60.866 47.826 14.67 0.00 0.00 3.58
5268 8226 5.413833 CCAAGTAATCTCTGCAGTCACAAAT 59.586 40.000 14.67 0.00 0.00 2.32
5325 8283 4.381612 CGGGATACAACAGTCTGCTTCTTA 60.382 45.833 0.00 0.00 39.74 2.10
5334 8292 4.345257 ACAGTCTGCTTCTTAGTCTTCCAA 59.655 41.667 0.00 0.00 0.00 3.53
5345 8303 3.347077 AGTCTTCCAAGCAATCAGAGG 57.653 47.619 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.412195 CGCGAAAATCATTCAACACGGA 60.412 45.455 0.00 0.00 0.00 4.69
17 18 1.952133 CGTGTCTGGACCGCGAAAA 60.952 57.895 8.23 0.00 32.97 2.29
21 22 2.126071 ATTCGTGTCTGGACCGCG 60.126 61.111 0.00 0.00 0.00 6.46
22 23 0.108992 TACATTCGTGTCTGGACCGC 60.109 55.000 0.00 0.00 0.00 5.68
40 41 1.339342 GCTGACCCTTTAAACCGCCTA 60.339 52.381 0.00 0.00 0.00 3.93
42 43 1.880894 GCTGACCCTTTAAACCGCC 59.119 57.895 0.00 0.00 0.00 6.13
48 49 0.036388 CTCCAGCGCTGACCCTTTAA 60.036 55.000 38.06 11.43 0.00 1.52
62 63 4.487714 TTTACAGTTAGGGCATCTCCAG 57.512 45.455 0.00 0.00 36.21 3.86
63 64 4.288626 AGTTTTACAGTTAGGGCATCTCCA 59.711 41.667 0.00 0.00 36.21 3.86
83 84 2.096248 GAGGTCCAGATCGACAGAGTT 58.904 52.381 0.00 0.00 34.24 3.01
84 85 1.004862 TGAGGTCCAGATCGACAGAGT 59.995 52.381 0.00 0.00 34.24 3.24
88 103 0.039764 AGGTGAGGTCCAGATCGACA 59.960 55.000 0.00 0.00 34.24 4.35
156 171 1.107114 TTCCTCTCAGTCATCGAGCC 58.893 55.000 0.00 0.00 0.00 4.70
158 173 4.710423 TCTTTTCCTCTCAGTCATCGAG 57.290 45.455 0.00 0.00 0.00 4.04
159 174 4.322049 GGTTCTTTTCCTCTCAGTCATCGA 60.322 45.833 0.00 0.00 0.00 3.59
160 175 3.929610 GGTTCTTTTCCTCTCAGTCATCG 59.070 47.826 0.00 0.00 0.00 3.84
162 177 3.652869 TGGGTTCTTTTCCTCTCAGTCAT 59.347 43.478 0.00 0.00 0.00 3.06
164 179 3.771577 TGGGTTCTTTTCCTCTCAGTC 57.228 47.619 0.00 0.00 0.00 3.51
165 180 3.812167 GCATGGGTTCTTTTCCTCTCAGT 60.812 47.826 0.00 0.00 0.00 3.41
166 181 2.751806 GCATGGGTTCTTTTCCTCTCAG 59.248 50.000 0.00 0.00 0.00 3.35
169 184 1.713078 AGGCATGGGTTCTTTTCCTCT 59.287 47.619 0.00 0.00 0.00 3.69
196 213 3.946308 TTCATGTCGCGTCTAGAGTAG 57.054 47.619 5.77 0.00 0.00 2.57
203 220 2.554806 TACGATTTCATGTCGCGTCT 57.445 45.000 5.77 0.00 42.56 4.18
206 223 2.408991 GCTGATACGATTTCATGTCGCG 60.409 50.000 0.00 0.00 42.56 5.87
214 231 4.770287 CTGCTGAATGCTGATACGATTTC 58.230 43.478 0.00 0.00 42.27 2.17
236 253 2.597510 GTCCCCCTTGTGGTGTGC 60.598 66.667 0.00 0.00 0.00 4.57
252 269 2.920912 TTCGCCGGTGGGAGAAGT 60.921 61.111 16.49 0.00 45.65 3.01
257 274 4.257654 TTTGCTTCGCCGGTGGGA 62.258 61.111 16.49 3.36 34.06 4.37
310 335 1.570347 TTGCACACGATACAACGGGC 61.570 55.000 0.00 0.00 40.59 6.13
311 336 0.165079 GTTGCACACGATACAACGGG 59.835 55.000 0.00 0.00 42.75 5.28
316 341 1.011968 GCTCGGTTGCACACGATACA 61.012 55.000 11.75 0.00 38.56 2.29
320 345 0.319986 TTATGCTCGGTTGCACACGA 60.320 50.000 10.97 10.97 46.33 4.35
331 356 2.159653 GCTTCTTGTGTGGTTATGCTCG 60.160 50.000 0.00 0.00 0.00 5.03
373 399 2.322355 AAGCTGCTTATCGATGTGCT 57.678 45.000 14.24 13.41 0.00 4.40
463 489 2.203280 TTGGGTGTGACTTGCGGG 60.203 61.111 0.00 0.00 0.00 6.13
474 500 1.341285 TGGCTGATTGGATCTTGGGTG 60.341 52.381 0.00 0.00 0.00 4.61
496 522 0.391263 GCACTCCACCCTACTTTCGG 60.391 60.000 0.00 0.00 0.00 4.30
648 682 2.108976 CCGAGTACGCCATGCCAT 59.891 61.111 0.00 0.00 38.29 4.40
673 707 1.084370 GGCTGCTACGGCTTAGTGTG 61.084 60.000 0.00 0.00 39.59 3.82
780 814 1.448013 GGTAGGCCGCTTGACTGAC 60.448 63.158 0.00 0.00 0.00 3.51
804 838 0.673644 GCCGTGGCTCTTTCTTGCTA 60.674 55.000 2.98 0.00 38.26 3.49
839 874 5.447010 GCAATGCTTCAAGTAAGAGCTACTG 60.447 44.000 0.00 0.00 40.14 2.74
840 875 4.633565 GCAATGCTTCAAGTAAGAGCTACT 59.366 41.667 0.00 0.00 43.06 2.57
885 920 6.099269 GGAGTGTCTTATAAACCCCACTCATA 59.901 42.308 22.05 0.00 46.57 2.15
953 988 5.778542 ACCACCTCAAGACCTGTATATACT 58.221 41.667 13.89 0.00 0.00 2.12
1027 1065 0.606401 AGGAATGCCACCACGAACAG 60.606 55.000 0.00 0.00 36.29 3.16
1125 1163 1.364171 GTAGATGGCGACGGAGCAT 59.636 57.895 6.70 0.00 39.27 3.79
1214 1256 3.490249 GCATACTCATACGTGCCAGTGTA 60.490 47.826 0.00 0.00 0.00 2.90
1218 1260 2.130395 CTGCATACTCATACGTGCCAG 58.870 52.381 0.00 0.00 36.79 4.85
1228 1270 0.752658 CCCCGTGATCTGCATACTCA 59.247 55.000 0.00 0.00 0.00 3.41
1230 1272 1.050988 AGCCCCGTGATCTGCATACT 61.051 55.000 0.00 0.00 0.00 2.12
1231 1273 0.882042 CAGCCCCGTGATCTGCATAC 60.882 60.000 0.00 0.00 0.00 2.39
1274 1320 2.350057 TGTCCGACAAATTCCCAACA 57.650 45.000 0.00 0.00 0.00 3.33
1277 1323 2.649531 ACTTGTCCGACAAATTCCCA 57.350 45.000 14.74 0.00 37.69 4.37
1399 1451 2.038269 ACACCCGCCGCACATTAAG 61.038 57.895 0.00 0.00 0.00 1.85
1465 1523 2.079925 ACGTAGAAGTACACCTCCGAC 58.920 52.381 6.53 0.00 0.00 4.79
1485 1543 5.277202 GCGAGTATCTTCATCACGTAGTACA 60.277 44.000 0.38 0.00 41.61 2.90
1504 1562 3.082579 GCAGAAGATCCCGGCGAGT 62.083 63.158 9.30 0.00 0.00 4.18
1564 1622 6.794374 TGAACCGTAAGCGATACTGTATTAA 58.206 36.000 1.22 0.00 41.33 1.40
1565 1623 6.375945 TGAACCGTAAGCGATACTGTATTA 57.624 37.500 1.22 0.00 41.33 0.98
1566 1624 5.252969 TGAACCGTAAGCGATACTGTATT 57.747 39.130 1.22 0.00 41.33 1.89
1567 1625 4.906065 TGAACCGTAAGCGATACTGTAT 57.094 40.909 0.00 0.00 41.33 2.29
1568 1626 4.082841 TGTTGAACCGTAAGCGATACTGTA 60.083 41.667 0.00 0.00 41.33 2.74
1569 1627 3.248266 GTTGAACCGTAAGCGATACTGT 58.752 45.455 0.00 0.00 41.33 3.55
1570 1628 3.247442 TGTTGAACCGTAAGCGATACTG 58.753 45.455 0.00 0.00 41.33 2.74
1571 1629 3.508762 CTGTTGAACCGTAAGCGATACT 58.491 45.455 0.00 0.00 41.33 2.12
1572 1630 2.028883 GCTGTTGAACCGTAAGCGATAC 59.971 50.000 0.00 0.00 41.33 2.24
1573 1631 2.264813 GCTGTTGAACCGTAAGCGATA 58.735 47.619 0.00 0.00 41.33 2.92
1574 1632 1.076332 GCTGTTGAACCGTAAGCGAT 58.924 50.000 0.00 0.00 41.33 4.58
1575 1633 0.249531 TGCTGTTGAACCGTAAGCGA 60.250 50.000 0.00 0.00 41.33 4.93
1576 1634 0.163788 CTGCTGTTGAACCGTAAGCG 59.836 55.000 0.00 0.00 36.66 4.68
1577 1635 1.508632 TCTGCTGTTGAACCGTAAGC 58.491 50.000 0.00 0.00 0.00 3.09
1578 1636 4.242475 TGTATCTGCTGTTGAACCGTAAG 58.758 43.478 0.00 0.00 0.00 2.34
1579 1637 4.260139 TGTATCTGCTGTTGAACCGTAA 57.740 40.909 0.00 0.00 0.00 3.18
1580 1638 3.945981 TGTATCTGCTGTTGAACCGTA 57.054 42.857 0.00 0.00 0.00 4.02
1581 1639 2.831685 TGTATCTGCTGTTGAACCGT 57.168 45.000 0.00 0.00 0.00 4.83
1582 1640 4.032900 GTGTATGTATCTGCTGTTGAACCG 59.967 45.833 0.00 0.00 0.00 4.44
1583 1641 4.332819 GGTGTATGTATCTGCTGTTGAACC 59.667 45.833 0.00 0.00 0.00 3.62
1584 1642 4.935205 TGGTGTATGTATCTGCTGTTGAAC 59.065 41.667 0.00 0.00 0.00 3.18
1585 1643 5.159273 TGGTGTATGTATCTGCTGTTGAA 57.841 39.130 0.00 0.00 0.00 2.69
1586 1644 4.222810 ACTGGTGTATGTATCTGCTGTTGA 59.777 41.667 0.00 0.00 0.00 3.18
1587 1645 4.507710 ACTGGTGTATGTATCTGCTGTTG 58.492 43.478 0.00 0.00 0.00 3.33
1592 1650 7.333423 TGTTTTTAGACTGGTGTATGTATCTGC 59.667 37.037 0.00 0.00 0.00 4.26
1599 1657 5.614668 CGTGCTGTTTTTAGACTGGTGTATG 60.615 44.000 0.00 0.00 0.00 2.39
1602 1660 2.612212 CGTGCTGTTTTTAGACTGGTGT 59.388 45.455 0.00 0.00 0.00 4.16
1603 1661 2.869801 TCGTGCTGTTTTTAGACTGGTG 59.130 45.455 0.00 0.00 0.00 4.17
1604 1662 3.188159 TCGTGCTGTTTTTAGACTGGT 57.812 42.857 0.00 0.00 0.00 4.00
1605 1663 4.545823 TTTCGTGCTGTTTTTAGACTGG 57.454 40.909 0.00 0.00 0.00 4.00
1607 1665 6.371809 TGAATTTCGTGCTGTTTTTAGACT 57.628 33.333 0.00 0.00 0.00 3.24
1608 1666 7.444558 TTTGAATTTCGTGCTGTTTTTAGAC 57.555 32.000 0.00 0.00 0.00 2.59
1609 1667 7.918033 TCATTTGAATTTCGTGCTGTTTTTAGA 59.082 29.630 0.00 0.00 0.00 2.10
1610 1668 8.060020 TCATTTGAATTTCGTGCTGTTTTTAG 57.940 30.769 0.00 0.00 0.00 1.85
1613 1671 5.463061 CCTCATTTGAATTTCGTGCTGTTTT 59.537 36.000 0.00 0.00 0.00 2.43
1614 1672 4.984161 CCTCATTTGAATTTCGTGCTGTTT 59.016 37.500 0.00 0.00 0.00 2.83
1615 1673 4.549458 CCTCATTTGAATTTCGTGCTGTT 58.451 39.130 0.00 0.00 0.00 3.16
1616 1674 3.057315 CCCTCATTTGAATTTCGTGCTGT 60.057 43.478 0.00 0.00 0.00 4.40
1617 1675 3.504863 CCCTCATTTGAATTTCGTGCTG 58.495 45.455 0.00 0.00 0.00 4.41
1618 1676 2.493278 CCCCTCATTTGAATTTCGTGCT 59.507 45.455 0.00 0.00 0.00 4.40
1660 1718 9.003658 AGACATTTATTGTAAGACCAAAGAGTG 57.996 33.333 0.00 0.00 39.18 3.51
1662 1720 9.219603 TGAGACATTTATTGTAAGACCAAAGAG 57.780 33.333 0.00 0.00 39.18 2.85
1663 1721 9.567776 TTGAGACATTTATTGTAAGACCAAAGA 57.432 29.630 0.00 0.00 39.18 2.52
1664 1722 9.612620 GTTGAGACATTTATTGTAAGACCAAAG 57.387 33.333 0.00 0.00 39.18 2.77
1665 1723 9.349713 AGTTGAGACATTTATTGTAAGACCAAA 57.650 29.630 0.00 0.00 39.18 3.28
1666 1724 8.918202 AGTTGAGACATTTATTGTAAGACCAA 57.082 30.769 0.00 0.00 39.18 3.67
1667 1725 8.918202 AAGTTGAGACATTTATTGTAAGACCA 57.082 30.769 0.00 0.00 39.18 4.02
1698 1756 9.914834 GGGGGTATAAATGCAAATATACTCATA 57.085 33.333 23.19 0.06 37.26 2.15
1699 1757 7.556275 CGGGGGTATAAATGCAAATATACTCAT 59.444 37.037 23.19 0.79 37.26 2.90
1700 1758 6.882140 CGGGGGTATAAATGCAAATATACTCA 59.118 38.462 23.19 0.00 37.26 3.41
1701 1759 6.882678 ACGGGGGTATAAATGCAAATATACTC 59.117 38.462 21.83 19.82 35.59 2.59
1702 1760 6.786122 ACGGGGGTATAAATGCAAATATACT 58.214 36.000 21.83 7.94 35.99 2.12
1703 1761 7.607223 TGTACGGGGGTATAAATGCAAATATAC 59.393 37.037 17.61 17.61 35.29 1.47
1738 1798 1.000618 TGTACCGGTAATTGTCGTGCA 59.999 47.619 17.78 3.60 0.00 4.57
1784 1848 5.873164 ACTCTCGCTTTACAAATCCGTATTT 59.127 36.000 0.00 0.00 35.65 1.40
1785 1849 5.291128 CACTCTCGCTTTACAAATCCGTATT 59.709 40.000 0.00 0.00 0.00 1.89
1786 1850 4.804139 CACTCTCGCTTTACAAATCCGTAT 59.196 41.667 0.00 0.00 0.00 3.06
1787 1851 4.171005 CACTCTCGCTTTACAAATCCGTA 58.829 43.478 0.00 0.00 0.00 4.02
1788 1852 2.993899 CACTCTCGCTTTACAAATCCGT 59.006 45.455 0.00 0.00 0.00 4.69
1789 1853 2.993899 ACACTCTCGCTTTACAAATCCG 59.006 45.455 0.00 0.00 0.00 4.18
1790 1854 6.476243 TTAACACTCTCGCTTTACAAATCC 57.524 37.500 0.00 0.00 0.00 3.01
1791 1855 8.776680 TTTTTAACACTCTCGCTTTACAAATC 57.223 30.769 0.00 0.00 0.00 2.17
1815 1879 8.617809 TCAGCTTGTTTCTCGTTTTACTATTTT 58.382 29.630 0.00 0.00 0.00 1.82
1834 1923 2.050350 CATGGGCCCAGTCAGCTTG 61.050 63.158 31.97 17.96 0.00 4.01
2069 2158 3.224324 TAGATGGCTCCCGCGGTC 61.224 66.667 26.12 14.01 36.88 4.79
2070 2159 3.537874 GTAGATGGCTCCCGCGGT 61.538 66.667 26.12 3.22 36.88 5.68
2072 2161 3.214250 GAGGTAGATGGCTCCCGCG 62.214 68.421 0.00 0.00 36.88 6.46
2303 2392 2.956333 AGTAAAAAGGGCACAACCACTC 59.044 45.455 0.00 0.00 42.05 3.51
2326 2415 7.775561 AGTCCATTTTCAGTTACTTTCAGAACT 59.224 33.333 0.00 0.00 36.31 3.01
2327 2416 7.857885 CAGTCCATTTTCAGTTACTTTCAGAAC 59.142 37.037 0.00 0.00 0.00 3.01
2351 2440 2.256117 AGTTTTCGAACAGGGACCAG 57.744 50.000 0.00 0.00 0.00 4.00
2354 2443 3.249320 GTGGTAAGTTTTCGAACAGGGAC 59.751 47.826 0.00 0.00 0.00 4.46
2356 2445 3.207778 TGTGGTAAGTTTTCGAACAGGG 58.792 45.455 0.00 0.00 0.00 4.45
2359 2448 3.271729 TGCTGTGGTAAGTTTTCGAACA 58.728 40.909 0.00 0.00 0.00 3.18
2375 2464 0.819259 AACGTTGGTGCAGATGCTGT 60.819 50.000 0.00 0.00 42.66 4.40
2379 2649 1.333308 TGAACAACGTTGGTGCAGATG 59.667 47.619 30.34 4.85 0.00 2.90
2380 2650 1.603802 CTGAACAACGTTGGTGCAGAT 59.396 47.619 30.34 6.37 31.10 2.90
2382 2652 1.013596 TCTGAACAACGTTGGTGCAG 58.986 50.000 30.34 28.00 0.00 4.41
2385 2655 6.721571 AGTAATATCTGAACAACGTTGGTG 57.278 37.500 30.34 14.79 0.00 4.17
2418 2735 4.503910 TCTGATTGAGTATTTGACGTGGG 58.496 43.478 0.00 0.00 0.00 4.61
2430 2747 1.612726 GCAGGGTTGCTCTGATTGAGT 60.613 52.381 0.00 0.00 46.95 3.41
2442 2759 3.813443 AGTATGCTATCTTGCAGGGTTG 58.187 45.455 0.00 0.00 46.71 3.77
2460 2777 3.839323 TTTGGGACAGAGGGAGTAGTA 57.161 47.619 0.00 0.00 42.39 1.82
2464 2781 3.916989 ACTTATTTTGGGACAGAGGGAGT 59.083 43.478 0.00 0.00 42.39 3.85
2466 2783 3.913799 TCACTTATTTTGGGACAGAGGGA 59.086 43.478 0.00 0.00 42.39 4.20
2467 2784 4.010349 GTCACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
2468 2785 3.684788 CGTCACTTATTTTGGGACAGAGG 59.315 47.826 0.00 0.00 42.39 3.69
2469 2786 3.684788 CCGTCACTTATTTTGGGACAGAG 59.315 47.826 0.00 0.00 42.39 3.35
2470 2787 3.558321 CCCGTCACTTATTTTGGGACAGA 60.558 47.826 0.00 0.00 42.39 3.41
2471 2788 2.747446 CCCGTCACTTATTTTGGGACAG 59.253 50.000 0.00 0.00 42.39 3.51
2472 2789 2.553466 CCCCGTCACTTATTTTGGGACA 60.553 50.000 0.00 0.00 39.03 4.02
2473 2790 2.089201 CCCCGTCACTTATTTTGGGAC 58.911 52.381 0.00 0.00 39.03 4.46
2474 2791 1.986631 TCCCCGTCACTTATTTTGGGA 59.013 47.619 0.00 0.00 39.03 4.37
2475 2792 2.290705 ACTCCCCGTCACTTATTTTGGG 60.291 50.000 0.00 0.00 36.37 4.12
2476 2793 3.067684 ACTCCCCGTCACTTATTTTGG 57.932 47.619 0.00 0.00 0.00 3.28
2477 2794 4.828829 AGTACTCCCCGTCACTTATTTTG 58.171 43.478 0.00 0.00 0.00 2.44
2478 2795 5.494390 AAGTACTCCCCGTCACTTATTTT 57.506 39.130 0.00 0.00 29.67 1.82
2479 2796 6.381994 TGATAAGTACTCCCCGTCACTTATTT 59.618 38.462 0.00 0.00 41.78 1.40
2480 2797 5.895534 TGATAAGTACTCCCCGTCACTTATT 59.104 40.000 0.00 0.00 41.78 1.40
2481 2798 5.452255 TGATAAGTACTCCCCGTCACTTAT 58.548 41.667 0.00 5.72 43.46 1.73
2482 2799 4.858850 TGATAAGTACTCCCCGTCACTTA 58.141 43.478 0.00 0.00 37.74 2.24
2483 2800 3.700038 CTGATAAGTACTCCCCGTCACTT 59.300 47.826 0.00 0.00 35.50 3.16
2484 2801 3.288964 CTGATAAGTACTCCCCGTCACT 58.711 50.000 0.00 0.00 0.00 3.41
2485 2802 3.022406 ACTGATAAGTACTCCCCGTCAC 58.978 50.000 0.00 0.00 0.00 3.67
2486 2803 3.377253 ACTGATAAGTACTCCCCGTCA 57.623 47.619 0.00 0.00 0.00 4.35
2487 2804 3.952967 AGAACTGATAAGTACTCCCCGTC 59.047 47.826 0.00 0.00 0.00 4.79
2488 2805 3.952967 GAGAACTGATAAGTACTCCCCGT 59.047 47.826 0.00 0.00 0.00 5.28
2489 2806 3.952323 TGAGAACTGATAAGTACTCCCCG 59.048 47.826 0.00 0.00 0.00 5.73
2490 2807 4.957327 AGTGAGAACTGATAAGTACTCCCC 59.043 45.833 0.00 0.00 0.00 4.81
2491 2808 7.642082 TTAGTGAGAACTGATAAGTACTCCC 57.358 40.000 0.00 0.00 0.00 4.30
2492 2809 8.958506 TCTTTAGTGAGAACTGATAAGTACTCC 58.041 37.037 0.00 0.00 0.00 3.85
2552 2869 2.689983 ACAAGGTCAAACTGCAAGGAAG 59.310 45.455 0.00 0.00 39.30 3.46
2584 2901 8.383619 CCGAGACTGTAAAAGAAAGTAATCATG 58.616 37.037 0.00 0.00 0.00 3.07
2682 3005 8.464770 TTTTGATCCTTGCTAATTCAAATTCG 57.535 30.769 0.00 0.00 36.50 3.34
2721 3044 9.985730 TTCTCTTTTGAAATATTTGCTGAACAT 57.014 25.926 5.17 0.00 0.00 2.71
2823 5550 3.192001 GGGGTCCGTTTAGTGAAAATTCC 59.808 47.826 0.00 0.00 0.00 3.01
3073 5981 4.034510 GCTGATCTGCAGTTACAATGGTAC 59.965 45.833 18.67 0.00 46.62 3.34
3155 6072 0.250234 TACGCTTGCAGCCTTGATCT 59.750 50.000 0.00 0.00 38.18 2.75
3306 6223 2.693069 AGAGCTGTTACATGAGTGCAC 58.307 47.619 9.40 9.40 0.00 4.57
3347 6264 6.293735 CGTGGTATCCTAAAAACTTCAGCAAA 60.294 38.462 0.00 0.00 0.00 3.68
3400 6317 3.244044 GCCATACAGGAAAACCTGCAAAA 60.244 43.478 15.02 1.01 41.12 2.44
3416 6333 0.880278 ACGACCATGCGATGCCATAC 60.880 55.000 0.00 0.00 34.83 2.39
3511 6428 7.753580 CGGCAGATCTACGTATATTATTGTTGA 59.246 37.037 10.02 0.00 0.00 3.18
3521 6438 2.225727 CACTGCGGCAGATCTACGTATA 59.774 50.000 34.70 0.00 35.18 1.47
3614 6533 9.522804 AACAAAAGCACTCAAAATTATAAACGA 57.477 25.926 0.00 0.00 0.00 3.85
3676 6595 3.402628 TTCTCGGAAGGAAGTGAAAGG 57.597 47.619 0.00 0.00 0.00 3.11
3683 6602 6.560253 TCTTTTGAATTTCTCGGAAGGAAG 57.440 37.500 0.00 0.00 0.00 3.46
3684 6603 6.952773 TTCTTTTGAATTTCTCGGAAGGAA 57.047 33.333 0.00 0.00 32.77 3.36
3685 6604 6.546034 AGTTTCTTTTGAATTTCTCGGAAGGA 59.454 34.615 0.00 0.00 38.37 3.36
3686 6605 6.739112 AGTTTCTTTTGAATTTCTCGGAAGG 58.261 36.000 0.00 0.00 38.37 3.46
3749 6672 5.782047 TCATTTGATCCAACGCTTTTTGAT 58.218 33.333 0.00 0.00 0.00 2.57
3758 6681 2.086869 ACCTGCTCATTTGATCCAACG 58.913 47.619 0.00 0.00 0.00 4.10
3808 6731 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3809 6732 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3810 6733 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3811 6734 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
3812 6735 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3813 6736 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3814 6737 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3815 6738 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3816 6739 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3817 6740 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3818 6741 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
3819 6742 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
3820 6743 7.925993 TGTCAAAAACGCTCTTATATTATGGG 58.074 34.615 0.00 0.00 0.00 4.00
3821 6744 9.950680 AATGTCAAAAACGCTCTTATATTATGG 57.049 29.630 0.00 0.00 0.00 2.74
3829 6752 9.865321 ACTATACTAATGTCAAAAACGCTCTTA 57.135 29.630 0.00 0.00 0.00 2.10
3830 6753 8.656849 CACTATACTAATGTCAAAAACGCTCTT 58.343 33.333 0.00 0.00 0.00 2.85
3831 6754 7.817962 ACACTATACTAATGTCAAAAACGCTCT 59.182 33.333 0.00 0.00 0.00 4.09
3832 6755 7.960793 ACACTATACTAATGTCAAAAACGCTC 58.039 34.615 0.00 0.00 0.00 5.03
3833 6756 7.900782 ACACTATACTAATGTCAAAAACGCT 57.099 32.000 0.00 0.00 0.00 5.07
3859 6782 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
3860 6783 7.458397 TCCGTCCCATAATATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
3861 6784 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
3862 6785 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
3863 6786 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
3864 6787 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
3865 6788 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3866 6789 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3867 6790 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3868 6791 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3869 6792 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3870 6793 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3871 6794 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3872 6795 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
3873 6796 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
3874 6797 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
3875 6798 3.501019 GGTAATACTCCCTCCGTCCCATA 60.501 52.174 0.00 0.00 0.00 2.74
3876 6799 2.606378 GTAATACTCCCTCCGTCCCAT 58.394 52.381 0.00 0.00 0.00 4.00
3877 6800 1.412074 GGTAATACTCCCTCCGTCCCA 60.412 57.143 0.00 0.00 0.00 4.37
3878 6801 1.336131 GGTAATACTCCCTCCGTCCC 58.664 60.000 0.00 0.00 0.00 4.46
3879 6802 1.336131 GGGTAATACTCCCTCCGTCC 58.664 60.000 0.00 0.00 41.58 4.79
3880 6803 2.077687 TGGGTAATACTCCCTCCGTC 57.922 55.000 2.65 0.00 44.84 4.79
3881 6804 2.113807 GTTGGGTAATACTCCCTCCGT 58.886 52.381 2.65 0.00 44.84 4.69
3882 6805 2.102588 CTGTTGGGTAATACTCCCTCCG 59.897 54.545 2.65 0.00 44.84 4.63
3883 6806 3.113043 ACTGTTGGGTAATACTCCCTCC 58.887 50.000 2.65 0.00 44.84 4.30
3884 6807 4.838904 AACTGTTGGGTAATACTCCCTC 57.161 45.455 0.00 0.00 44.84 4.30
3885 6808 5.548836 TGTAAACTGTTGGGTAATACTCCCT 59.451 40.000 0.00 0.00 44.84 4.20
3886 6809 5.645067 GTGTAAACTGTTGGGTAATACTCCC 59.355 44.000 0.00 0.00 44.81 4.30
3887 6810 6.470278 AGTGTAAACTGTTGGGTAATACTCC 58.530 40.000 0.00 0.00 0.00 3.85
3888 6811 7.443272 ACAAGTGTAAACTGTTGGGTAATACTC 59.557 37.037 0.00 0.00 0.00 2.59
3889 6812 7.227910 CACAAGTGTAAACTGTTGGGTAATACT 59.772 37.037 0.00 0.00 0.00 2.12
3890 6813 7.227116 TCACAAGTGTAAACTGTTGGGTAATAC 59.773 37.037 0.00 0.00 0.00 1.89
4027 6950 6.002082 AGTTTATGTTCCCTTACCTGTCAAC 58.998 40.000 0.00 0.00 0.00 3.18
4050 6973 6.645415 AGACTGACAAAACTTGTATCCGTTAG 59.355 38.462 0.00 0.00 45.52 2.34
4104 7027 5.922544 GGACACAAGAAAACAAGATGATTGG 59.077 40.000 0.00 0.00 0.00 3.16
4105 7028 6.506147 TGGACACAAGAAAACAAGATGATTG 58.494 36.000 0.00 0.00 0.00 2.67
4109 7032 4.202040 TGCTGGACACAAGAAAACAAGATG 60.202 41.667 0.00 0.00 0.00 2.90
4127 7050 2.205022 TCTGAAAGGAACCATGCTGG 57.795 50.000 1.16 1.16 45.02 4.85
4207 7130 4.638304 TCTTTAAGGTGTTCCACTGTAGC 58.362 43.478 0.00 0.00 34.40 3.58
4272 7197 2.431782 AGCTGCACAAAAACTCACCAAT 59.568 40.909 1.02 0.00 0.00 3.16
4517 7470 2.293677 CCGGTCAGCTATGTACTGGTAG 59.706 54.545 0.00 0.00 35.34 3.18
4818 7775 5.689068 GCATAAGCTCATTTCATAACAAGCC 59.311 40.000 0.00 0.00 37.91 4.35
4841 7798 1.455383 CCTGTTGGCCCCGATAATGC 61.455 60.000 0.00 0.00 0.00 3.56
4944 7901 2.266279 CCTTGAGTTTGAGGGGAGGTA 58.734 52.381 0.00 0.00 0.00 3.08
4968 7925 2.872858 GTCCAAACTCAGTGTCCAAGAC 59.127 50.000 0.00 0.00 0.00 3.01
5042 7999 1.078848 GTGCCATCGGAGCTTCAGT 60.079 57.895 0.00 0.00 0.00 3.41
5055 8012 1.357137 TGACCCTTCAGTATGTGCCA 58.643 50.000 0.00 0.00 37.40 4.92
5072 8029 2.103094 CGGGTGCAAGAGAGGATTATGA 59.897 50.000 0.00 0.00 0.00 2.15
5075 8032 1.757118 CTCGGGTGCAAGAGAGGATTA 59.243 52.381 8.85 0.00 36.65 1.75
5092 8049 2.554142 TGCCTTCTACATGCATTCTCG 58.446 47.619 0.00 0.00 0.00 4.04
5098 8055 2.749076 GTGTTGATGCCTTCTACATGCA 59.251 45.455 0.00 0.00 41.15 3.96
5120 8077 3.865446 CATGAGCTCACCAAGTACATCA 58.135 45.455 20.97 0.00 0.00 3.07
5175 8132 1.294659 CTTTGCTCTCCGACAGCACC 61.295 60.000 0.00 0.00 46.65 5.01
5265 8223 2.028130 GCTGCGAGCTATGGCATTT 58.972 52.632 4.78 0.00 39.60 2.32
5325 8283 2.026449 CCCTCTGATTGCTTGGAAGACT 60.026 50.000 0.00 0.00 0.00 3.24
5334 8292 1.210204 TTGGCTCCCCTCTGATTGCT 61.210 55.000 0.00 0.00 0.00 3.91
5345 8303 3.751479 ATTGTGTTTTTCTTGGCTCCC 57.249 42.857 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.