Multiple sequence alignment - TraesCS6B01G271800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G271800 | chr6B | 100.000 | 5733 | 0 | 0 | 1 | 5733 | 490263064 | 490257332 | 0.000000e+00 | 10587.0 |
1 | TraesCS6B01G271800 | chr6A | 90.760 | 3474 | 213 | 46 | 2297 | 5725 | 469427200 | 469430610 | 0.000000e+00 | 4538.0 |
2 | TraesCS6B01G271800 | chr6A | 93.869 | 1680 | 67 | 17 | 637 | 2295 | 469425588 | 469427252 | 0.000000e+00 | 2499.0 |
3 | TraesCS6B01G271800 | chr6A | 90.659 | 546 | 16 | 14 | 1 | 533 | 469425069 | 469425592 | 0.000000e+00 | 693.0 |
4 | TraesCS6B01G271800 | chr6D | 92.170 | 2516 | 118 | 39 | 2297 | 4780 | 330108944 | 330111412 | 0.000000e+00 | 3482.0 |
5 | TraesCS6B01G271800 | chr6D | 91.637 | 1674 | 86 | 22 | 632 | 2288 | 330107355 | 330108991 | 0.000000e+00 | 2266.0 |
6 | TraesCS6B01G271800 | chr6D | 89.827 | 521 | 18 | 8 | 1 | 508 | 330106789 | 330107287 | 2.250000e-178 | 636.0 |
7 | TraesCS6B01G271800 | chr6D | 92.343 | 431 | 14 | 6 | 4786 | 5213 | 330111500 | 330111914 | 3.820000e-166 | 595.0 |
8 | TraesCS6B01G271800 | chr6D | 88.889 | 252 | 26 | 2 | 5335 | 5584 | 330112046 | 330112297 | 5.580000e-80 | 309.0 |
9 | TraesCS6B01G271800 | chr6D | 88.068 | 176 | 13 | 5 | 5557 | 5725 | 330112297 | 330112471 | 9.740000e-48 | 202.0 |
10 | TraesCS6B01G271800 | chr7A | 95.833 | 48 | 1 | 1 | 3674 | 3721 | 575281069 | 575281023 | 6.160000e-10 | 76.8 |
11 | TraesCS6B01G271800 | chr3D | 95.745 | 47 | 2 | 0 | 3675 | 3721 | 424659572 | 424659618 | 6.160000e-10 | 76.8 |
12 | TraesCS6B01G271800 | chr3A | 95.745 | 47 | 2 | 0 | 3675 | 3721 | 564342560 | 564342514 | 6.160000e-10 | 76.8 |
13 | TraesCS6B01G271800 | chr7D | 97.674 | 43 | 1 | 0 | 3679 | 3721 | 176171804 | 176171762 | 2.220000e-09 | 75.0 |
14 | TraesCS6B01G271800 | chr5D | 95.652 | 46 | 2 | 0 | 3675 | 3720 | 527572664 | 527572709 | 2.220000e-09 | 75.0 |
15 | TraesCS6B01G271800 | chr5D | 95.652 | 46 | 2 | 0 | 3675 | 3720 | 527602227 | 527602272 | 2.220000e-09 | 75.0 |
16 | TraesCS6B01G271800 | chr5D | 93.750 | 48 | 3 | 0 | 3674 | 3721 | 476275184 | 476275231 | 7.970000e-09 | 73.1 |
17 | TraesCS6B01G271800 | chr1B | 93.878 | 49 | 3 | 0 | 3673 | 3721 | 70315147 | 70315099 | 2.220000e-09 | 75.0 |
18 | TraesCS6B01G271800 | chr1B | 90.566 | 53 | 4 | 1 | 3680 | 3731 | 328153806 | 328153858 | 1.030000e-07 | 69.4 |
19 | TraesCS6B01G271800 | chr5B | 87.500 | 56 | 5 | 2 | 5213 | 5268 | 402744322 | 402744269 | 4.800000e-06 | 63.9 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G271800 | chr6B | 490257332 | 490263064 | 5732 | True | 10587.000000 | 10587 | 100.000000 | 1 | 5733 | 1 | chr6B.!!$R1 | 5732 |
1 | TraesCS6B01G271800 | chr6A | 469425069 | 469430610 | 5541 | False | 2576.666667 | 4538 | 91.762667 | 1 | 5725 | 3 | chr6A.!!$F1 | 5724 |
2 | TraesCS6B01G271800 | chr6D | 330106789 | 330112471 | 5682 | False | 1248.333333 | 3482 | 90.489000 | 1 | 5725 | 6 | chr6D.!!$F1 | 5724 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
900 | 933 | 0.107268 | TGTCATCATCATGGCGGGAG | 59.893 | 55.0 | 0.00 | 0.0 | 37.45 | 4.30 | F |
1426 | 1475 | 0.249155 | GCATTACGGCTACGGCTACA | 60.249 | 55.0 | 0.00 | 0.0 | 46.48 | 2.74 | F |
2449 | 2504 | 0.257039 | ATTCAGGGCATGGAGGTGAC | 59.743 | 55.0 | 0.00 | 0.0 | 0.00 | 3.67 | F |
3290 | 3386 | 0.609662 | ACCGCACCCGTGTTAACTAT | 59.390 | 50.0 | 7.22 | 0.0 | 0.00 | 2.12 | F |
4114 | 4225 | 0.523966 | GGATCAGTCGGGATCTAGCG | 59.476 | 60.0 | 10.84 | 0.0 | 42.63 | 4.26 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2016 | 2065 | 0.458543 | CCGATGACTTCCGGTGAGTG | 60.459 | 60.0 | 16.09 | 4.09 | 40.78 | 3.51 | R |
3271 | 3367 | 0.609662 | ATAGTTAACACGGGTGCGGT | 59.390 | 50.0 | 8.61 | 0.00 | 0.00 | 5.68 | R |
3802 | 3901 | 0.179070 | GCAGGGCTGTAGAGTTAGGC | 60.179 | 60.0 | 0.00 | 0.00 | 38.62 | 3.93 | R |
4409 | 4520 | 0.250038 | AGCTCGCTTTGCTCAACAGA | 60.250 | 50.0 | 0.00 | 0.00 | 35.67 | 3.41 | R |
4922 | 5115 | 0.331616 | ATGGACCAAGGGTTGCCTAC | 59.668 | 55.0 | 0.00 | 0.00 | 35.25 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
38 | 39 | 1.216977 | CATTCGGGCAGTGGTACGA | 59.783 | 57.895 | 0.00 | 0.00 | 0.00 | 3.43 |
96 | 97 | 4.827692 | TGCACACCCTACTAACAGTAATG | 58.172 | 43.478 | 0.00 | 0.00 | 29.00 | 1.90 |
242 | 248 | 1.589993 | CACCGCAGCGTATCCTCTG | 60.590 | 63.158 | 15.05 | 0.00 | 0.00 | 3.35 |
262 | 268 | 2.436292 | CAGAGCAGAGCAGGGCAC | 60.436 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
263 | 269 | 2.607134 | AGAGCAGAGCAGGGCACT | 60.607 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
264 | 270 | 2.125188 | GAGCAGAGCAGGGCACTC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
287 | 298 | 1.802880 | CGTTGATCCGGTGATGGAGAC | 60.803 | 57.143 | 0.00 | 0.00 | 42.45 | 3.36 |
445 | 464 | 4.443266 | GCAGTCCTCGCCTCGCTT | 62.443 | 66.667 | 0.00 | 0.00 | 0.00 | 4.68 |
446 | 465 | 2.202676 | CAGTCCTCGCCTCGCTTC | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
447 | 466 | 3.453679 | AGTCCTCGCCTCGCTTCC | 61.454 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
448 | 467 | 3.760035 | GTCCTCGCCTCGCTTCCA | 61.760 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
558 | 577 | 3.315949 | CCCCTCCGTTTCCCGTCA | 61.316 | 66.667 | 0.00 | 0.00 | 33.66 | 4.35 |
559 | 578 | 2.047560 | CCCTCCGTTTCCCGTCAC | 60.048 | 66.667 | 0.00 | 0.00 | 33.66 | 3.67 |
561 | 580 | 2.337532 | CTCCGTTTCCCGTCACGT | 59.662 | 61.111 | 0.00 | 0.00 | 34.47 | 4.49 |
562 | 581 | 1.300388 | CTCCGTTTCCCGTCACGTT | 60.300 | 57.895 | 0.00 | 0.00 | 34.47 | 3.99 |
564 | 583 | 2.312436 | CCGTTTCCCGTCACGTTCC | 61.312 | 63.158 | 0.00 | 0.00 | 34.47 | 3.62 |
565 | 584 | 2.312436 | CGTTTCCCGTCACGTTCCC | 61.312 | 63.158 | 0.00 | 0.00 | 0.00 | 3.97 |
566 | 585 | 1.962822 | GTTTCCCGTCACGTTCCCC | 60.963 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
567 | 586 | 2.441675 | TTTCCCGTCACGTTCCCCA | 61.442 | 57.895 | 0.00 | 0.00 | 0.00 | 4.96 |
568 | 587 | 2.663423 | TTTCCCGTCACGTTCCCCAC | 62.663 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
569 | 588 | 3.931247 | CCCGTCACGTTCCCCACA | 61.931 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
570 | 589 | 2.663852 | CCGTCACGTTCCCCACAC | 60.664 | 66.667 | 0.00 | 0.00 | 0.00 | 3.82 |
571 | 590 | 2.420043 | CGTCACGTTCCCCACACT | 59.580 | 61.111 | 0.00 | 0.00 | 0.00 | 3.55 |
572 | 591 | 1.663702 | CGTCACGTTCCCCACACTC | 60.664 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
573 | 592 | 1.663702 | GTCACGTTCCCCACACTCG | 60.664 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
574 | 593 | 2.357034 | CACGTTCCCCACACTCGG | 60.357 | 66.667 | 0.00 | 0.00 | 0.00 | 4.63 |
575 | 594 | 2.522436 | ACGTTCCCCACACTCGGA | 60.522 | 61.111 | 0.00 | 0.00 | 0.00 | 4.55 |
576 | 595 | 2.261671 | CGTTCCCCACACTCGGAG | 59.738 | 66.667 | 2.83 | 2.83 | 0.00 | 4.63 |
577 | 596 | 2.663196 | GTTCCCCACACTCGGAGG | 59.337 | 66.667 | 10.23 | 1.07 | 0.00 | 4.30 |
578 | 597 | 3.319198 | TTCCCCACACTCGGAGGC | 61.319 | 66.667 | 10.23 | 0.00 | 0.00 | 4.70 |
581 | 600 | 3.066190 | CCCACACTCGGAGGCGTA | 61.066 | 66.667 | 10.23 | 0.00 | 0.00 | 4.42 |
582 | 601 | 2.490217 | CCACACTCGGAGGCGTAG | 59.510 | 66.667 | 10.23 | 0.00 | 0.00 | 3.51 |
610 | 629 | 7.064134 | CGCAGATACTATTAGAAGAGATCGTCT | 59.936 | 40.741 | 3.80 | 3.80 | 38.26 | 4.18 |
611 | 630 | 9.373603 | GCAGATACTATTAGAAGAGATCGTCTA | 57.626 | 37.037 | 0.00 | 1.94 | 36.21 | 2.59 |
616 | 635 | 8.836268 | ACTATTAGAAGAGATCGTCTATCGTT | 57.164 | 34.615 | 6.37 | 0.00 | 39.79 | 3.85 |
617 | 636 | 8.714179 | ACTATTAGAAGAGATCGTCTATCGTTG | 58.286 | 37.037 | 6.37 | 1.90 | 39.79 | 4.10 |
618 | 637 | 6.922247 | TTAGAAGAGATCGTCTATCGTTGT | 57.078 | 37.500 | 6.37 | 0.00 | 39.79 | 3.32 |
619 | 638 | 8.604640 | ATTAGAAGAGATCGTCTATCGTTGTA | 57.395 | 34.615 | 6.37 | 0.00 | 39.79 | 2.41 |
620 | 639 | 8.604640 | TTAGAAGAGATCGTCTATCGTTGTAT | 57.395 | 34.615 | 6.37 | 0.00 | 39.79 | 2.29 |
621 | 640 | 6.893759 | AGAAGAGATCGTCTATCGTTGTATG | 58.106 | 40.000 | 0.00 | 0.00 | 39.79 | 2.39 |
622 | 641 | 5.614923 | AGAGATCGTCTATCGTTGTATGG | 57.385 | 43.478 | 0.00 | 0.00 | 39.79 | 2.74 |
623 | 642 | 4.456222 | AGAGATCGTCTATCGTTGTATGGG | 59.544 | 45.833 | 0.00 | 0.00 | 39.79 | 4.00 |
624 | 643 | 4.142790 | AGATCGTCTATCGTTGTATGGGT | 58.857 | 43.478 | 0.00 | 0.00 | 39.79 | 4.51 |
625 | 644 | 3.703286 | TCGTCTATCGTTGTATGGGTG | 57.297 | 47.619 | 0.00 | 0.00 | 40.80 | 4.61 |
626 | 645 | 2.359848 | TCGTCTATCGTTGTATGGGTGG | 59.640 | 50.000 | 0.00 | 0.00 | 40.80 | 4.61 |
627 | 646 | 2.545113 | CGTCTATCGTTGTATGGGTGGG | 60.545 | 54.545 | 0.00 | 0.00 | 34.52 | 4.61 |
628 | 647 | 2.433239 | GTCTATCGTTGTATGGGTGGGT | 59.567 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
629 | 648 | 2.432874 | TCTATCGTTGTATGGGTGGGTG | 59.567 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
630 | 649 | 0.393808 | ATCGTTGTATGGGTGGGTGC | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
670 | 689 | 1.006220 | CAAGAAAACAAGGGGCGCC | 60.006 | 57.895 | 21.18 | 21.18 | 0.00 | 6.53 |
671 | 690 | 2.207229 | AAGAAAACAAGGGGCGCCC | 61.207 | 57.895 | 38.57 | 38.57 | 45.90 | 6.13 |
716 | 737 | 1.546998 | GCCCGGAAAAAGAAGGAAGGA | 60.547 | 52.381 | 0.73 | 0.00 | 0.00 | 3.36 |
723 | 744 | 2.753055 | AAAGAAGGAAGGAGCGAGTC | 57.247 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
745 | 766 | 2.384382 | AGCGAGTGCAAACAAATTTCG | 58.616 | 42.857 | 0.00 | 0.00 | 46.23 | 3.46 |
891 | 924 | 0.172578 | GTCCGTCGGTGTCATCATCA | 59.827 | 55.000 | 11.88 | 0.00 | 0.00 | 3.07 |
900 | 933 | 0.107268 | TGTCATCATCATGGCGGGAG | 59.893 | 55.000 | 0.00 | 0.00 | 37.45 | 4.30 |
941 | 974 | 4.789123 | CCCGGGGCCGATCGTTTT | 62.789 | 66.667 | 14.71 | 0.00 | 42.83 | 2.43 |
942 | 975 | 2.187424 | CCGGGGCCGATCGTTTTA | 59.813 | 61.111 | 15.09 | 0.00 | 42.83 | 1.52 |
943 | 976 | 1.885850 | CCGGGGCCGATCGTTTTAG | 60.886 | 63.158 | 15.09 | 0.00 | 42.83 | 1.85 |
944 | 977 | 1.885850 | CGGGGCCGATCGTTTTAGG | 60.886 | 63.158 | 15.09 | 0.00 | 42.83 | 2.69 |
945 | 978 | 1.523524 | GGGGCCGATCGTTTTAGGA | 59.476 | 57.895 | 15.09 | 0.00 | 0.00 | 2.94 |
1376 | 1419 | 4.308458 | CCGCCACGACCAACTCCA | 62.308 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1377 | 1420 | 3.041940 | CGCCACGACCAACTCCAC | 61.042 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
1426 | 1475 | 0.249155 | GCATTACGGCTACGGCTACA | 60.249 | 55.000 | 0.00 | 0.00 | 46.48 | 2.74 |
1428 | 1477 | 1.066605 | CATTACGGCTACGGCTACAGT | 59.933 | 52.381 | 0.00 | 0.00 | 46.48 | 3.55 |
1552 | 1601 | 4.883300 | CGTCGGAGCGCGTCTACC | 62.883 | 72.222 | 8.43 | 5.46 | 0.00 | 3.18 |
1698 | 1747 | 2.631418 | ATGTGTTCGACGACTACCAG | 57.369 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2085 | 2134 | 2.251642 | ACAGTTTGTTCGAGCGGCC | 61.252 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
2220 | 2269 | 5.235305 | AGTTTCATTGATGTTATGGCGAC | 57.765 | 39.130 | 0.00 | 0.00 | 0.00 | 5.19 |
2265 | 2314 | 9.071276 | ACTGGCATATTTTCTGATATACTTTGG | 57.929 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
2449 | 2504 | 0.257039 | ATTCAGGGCATGGAGGTGAC | 59.743 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2734 | 2796 | 6.371548 | TGGTGACAAATATTTACTGAGAGCAC | 59.628 | 38.462 | 0.00 | 3.44 | 37.44 | 4.40 |
2736 | 2798 | 7.094805 | GGTGACAAATATTTACTGAGAGCACAA | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 3.33 |
2740 | 2802 | 8.454106 | ACAAATATTTACTGAGAGCACAATGTC | 58.546 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2741 | 2803 | 8.453320 | CAAATATTTACTGAGAGCACAATGTCA | 58.547 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
2742 | 2804 | 8.743085 | AATATTTACTGAGAGCACAATGTCAT | 57.257 | 30.769 | 0.00 | 0.00 | 0.00 | 3.06 |
2743 | 2805 | 6.674694 | ATTTACTGAGAGCACAATGTCATC | 57.325 | 37.500 | 0.00 | 0.00 | 0.00 | 2.92 |
2744 | 2806 | 3.977134 | ACTGAGAGCACAATGTCATCT | 57.023 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
2745 | 2807 | 4.283363 | ACTGAGAGCACAATGTCATCTT | 57.717 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
2746 | 2808 | 4.649692 | ACTGAGAGCACAATGTCATCTTT | 58.350 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2747 | 2809 | 5.068636 | ACTGAGAGCACAATGTCATCTTTT | 58.931 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
2748 | 2810 | 5.533903 | ACTGAGAGCACAATGTCATCTTTTT | 59.466 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2806 | 2868 | 1.999048 | CCATGTTTGCGCAATGACAT | 58.001 | 45.000 | 26.90 | 26.90 | 33.27 | 3.06 |
2807 | 2869 | 2.339418 | CCATGTTTGCGCAATGACATT | 58.661 | 42.857 | 28.97 | 16.52 | 30.78 | 2.71 |
2808 | 2870 | 2.737783 | CCATGTTTGCGCAATGACATTT | 59.262 | 40.909 | 28.97 | 14.32 | 30.78 | 2.32 |
2809 | 2871 | 3.181528 | CCATGTTTGCGCAATGACATTTC | 60.182 | 43.478 | 28.97 | 12.47 | 30.78 | 2.17 |
2810 | 2872 | 3.089573 | TGTTTGCGCAATGACATTTCA | 57.910 | 38.095 | 25.64 | 1.84 | 35.73 | 2.69 |
2811 | 2873 | 3.651206 | TGTTTGCGCAATGACATTTCAT | 58.349 | 36.364 | 25.64 | 0.00 | 44.98 | 2.57 |
2812 | 2874 | 3.674281 | TGTTTGCGCAATGACATTTCATC | 59.326 | 39.130 | 25.64 | 0.00 | 42.00 | 2.92 |
2814 | 2876 | 3.409851 | TGCGCAATGACATTTCATCTC | 57.590 | 42.857 | 8.16 | 0.00 | 42.00 | 2.75 |
2948 | 3034 | 5.036916 | TGGAGACCAAATACCCAGATTAGT | 58.963 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2979 | 3065 | 8.988064 | TTAAATTTGCGTGCCATATTTAAAGA | 57.012 | 26.923 | 0.00 | 0.00 | 40.80 | 2.52 |
3068 | 3154 | 9.860898 | GTTTAGTTTCATTTGAAAGGATGCTAT | 57.139 | 29.630 | 5.99 | 0.00 | 43.82 | 2.97 |
3174 | 3270 | 4.312443 | TCTTGTTGGCTCCTTAGTAAACG | 58.688 | 43.478 | 0.00 | 0.00 | 0.00 | 3.60 |
3214 | 3310 | 6.668541 | TGAAAATCTCTTATGCAGCACTAC | 57.331 | 37.500 | 0.00 | 0.00 | 0.00 | 2.73 |
3235 | 3331 | 3.190535 | ACTTTCAATAATGTGGGACGTGC | 59.809 | 43.478 | 0.00 | 0.00 | 0.00 | 5.34 |
3274 | 3370 | 9.265901 | ACTGAGATTATTTTTCTCATATGACCG | 57.734 | 33.333 | 0.00 | 0.00 | 46.26 | 4.79 |
3290 | 3386 | 0.609662 | ACCGCACCCGTGTTAACTAT | 59.390 | 50.000 | 7.22 | 0.00 | 0.00 | 2.12 |
3601 | 3697 | 9.265901 | CCTTGACATCTTAGGTACATATTTCAG | 57.734 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
3629 | 3725 | 2.165167 | CCTGTCGGTACACTACTTCCA | 58.835 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
3693 | 3792 | 6.011122 | TCTATTAAGAAGTACTCCCTCCGT | 57.989 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
3694 | 3793 | 7.141758 | TCTATTAAGAAGTACTCCCTCCGTA | 57.858 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3695 | 3794 | 7.577303 | TCTATTAAGAAGTACTCCCTCCGTAA | 58.423 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
3696 | 3795 | 8.055181 | TCTATTAAGAAGTACTCCCTCCGTAAA | 58.945 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
3697 | 3796 | 6.521151 | TTAAGAAGTACTCCCTCCGTAAAG | 57.479 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
3698 | 3797 | 4.313020 | AGAAGTACTCCCTCCGTAAAGA | 57.687 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
3700 | 3799 | 5.082425 | AGAAGTACTCCCTCCGTAAAGAAA | 58.918 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
3702 | 3801 | 6.894103 | AGAAGTACTCCCTCCGTAAAGAAATA | 59.106 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
3704 | 3803 | 8.773033 | AAGTACTCCCTCCGTAAAGAAATATA | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
3705 | 3804 | 8.773033 | AGTACTCCCTCCGTAAAGAAATATAA | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
3707 | 3806 | 6.522946 | ACTCCCTCCGTAAAGAAATATAAGC | 58.477 | 40.000 | 0.00 | 0.00 | 0.00 | 3.09 |
3708 | 3807 | 5.535333 | TCCCTCCGTAAAGAAATATAAGCG | 58.465 | 41.667 | 0.00 | 0.00 | 0.00 | 4.68 |
3709 | 3808 | 4.151867 | CCCTCCGTAAAGAAATATAAGCGC | 59.848 | 45.833 | 0.00 | 0.00 | 0.00 | 5.92 |
3710 | 3809 | 4.748102 | CCTCCGTAAAGAAATATAAGCGCA | 59.252 | 41.667 | 11.47 | 0.00 | 0.00 | 6.09 |
3711 | 3810 | 5.408604 | CCTCCGTAAAGAAATATAAGCGCAT | 59.591 | 40.000 | 11.47 | 0.00 | 0.00 | 4.73 |
3712 | 3811 | 6.073222 | CCTCCGTAAAGAAATATAAGCGCATT | 60.073 | 38.462 | 11.47 | 3.50 | 0.00 | 3.56 |
3713 | 3812 | 7.254227 | TCCGTAAAGAAATATAAGCGCATTT | 57.746 | 32.000 | 11.47 | 6.66 | 0.00 | 2.32 |
3714 | 3813 | 8.367943 | TCCGTAAAGAAATATAAGCGCATTTA | 57.632 | 30.769 | 11.47 | 0.00 | 0.00 | 1.40 |
3715 | 3814 | 8.492748 | TCCGTAAAGAAATATAAGCGCATTTAG | 58.507 | 33.333 | 11.47 | 0.00 | 0.00 | 1.85 |
3716 | 3815 | 8.492748 | CCGTAAAGAAATATAAGCGCATTTAGA | 58.507 | 33.333 | 11.47 | 0.00 | 0.00 | 2.10 |
3720 | 3819 | 9.884465 | AAAGAAATATAAGCGCATTTAGATCAC | 57.116 | 29.630 | 11.47 | 1.90 | 0.00 | 3.06 |
3743 | 3842 | 5.106237 | ACGAGTAACATTCTCAGTCCAGTAC | 60.106 | 44.000 | 0.00 | 0.00 | 32.79 | 2.73 |
3760 | 3859 | 7.811713 | AGTCCAGTACGTTATTAAGTTTCAGTC | 59.188 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3801 | 3900 | 9.953565 | TTTTTACATATTGTGTAGAGGCTAACT | 57.046 | 29.630 | 0.00 | 0.00 | 43.79 | 2.24 |
3802 | 3901 | 8.942338 | TTTACATATTGTGTAGAGGCTAACTG | 57.058 | 34.615 | 0.00 | 0.00 | 43.79 | 3.16 |
3803 | 3902 | 5.360591 | ACATATTGTGTAGAGGCTAACTGC | 58.639 | 41.667 | 0.00 | 0.00 | 39.91 | 4.40 |
3816 | 3915 | 3.449632 | GCTAACTGCCTAACTCTACAGC | 58.550 | 50.000 | 0.00 | 0.00 | 33.35 | 4.40 |
3887 | 3997 | 6.351371 | CCGAGTAATCAATATCCCTACATGCT | 60.351 | 42.308 | 0.00 | 0.00 | 0.00 | 3.79 |
3917 | 4027 | 3.545703 | AGGTGAACTTTCCTGAACACTG | 58.454 | 45.455 | 0.00 | 0.00 | 32.29 | 3.66 |
4114 | 4225 | 0.523966 | GGATCAGTCGGGATCTAGCG | 59.476 | 60.000 | 10.84 | 0.00 | 42.63 | 4.26 |
4219 | 4330 | 2.034687 | GGATGGCTGGCACTGTGT | 59.965 | 61.111 | 5.88 | 0.00 | 0.00 | 3.72 |
4372 | 4483 | 2.779742 | TTACCGCCATGCAAGCCCTT | 62.780 | 55.000 | 6.51 | 0.00 | 0.00 | 3.95 |
4375 | 4486 | 2.575461 | GCCATGCAAGCCCTTGTC | 59.425 | 61.111 | 9.53 | 3.42 | 42.31 | 3.18 |
4384 | 4495 | 1.192146 | AAGCCCTTGTCTCCAGCGTA | 61.192 | 55.000 | 0.00 | 0.00 | 0.00 | 4.42 |
4438 | 4549 | 2.530177 | CAAAGCGAGCTGATCTTCGTA | 58.470 | 47.619 | 13.54 | 0.00 | 0.00 | 3.43 |
4453 | 4564 | 1.631405 | TCGTAACCCGGGAAAGAGAA | 58.369 | 50.000 | 32.02 | 2.73 | 37.11 | 2.87 |
4531 | 4642 | 0.185901 | TGAACAAGAAGCTGGCCCTT | 59.814 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
4690 | 4801 | 1.524482 | GGAGACCCTGAGACATGCC | 59.476 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
4725 | 4836 | 3.501349 | TGTCCAGAGAGAGTGCTAAAGT | 58.499 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
4735 | 4846 | 4.518249 | AGAGTGCTAAAGTTTCATAGCCC | 58.482 | 43.478 | 6.43 | 0.00 | 43.05 | 5.19 |
4751 | 4862 | 0.810648 | GCCCGATTTTGCATCTGACA | 59.189 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
4752 | 4863 | 1.202222 | GCCCGATTTTGCATCTGACAG | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
4753 | 4864 | 2.358957 | CCCGATTTTGCATCTGACAGA | 58.641 | 47.619 | 7.80 | 7.80 | 0.00 | 3.41 |
4754 | 4865 | 2.096496 | CCCGATTTTGCATCTGACAGAC | 59.904 | 50.000 | 7.47 | 0.00 | 0.00 | 3.51 |
4847 | 5040 | 0.674581 | CTGGGCGAATGCTTCTGACA | 60.675 | 55.000 | 0.00 | 0.00 | 42.25 | 3.58 |
4898 | 5091 | 9.482627 | CTGACTTCTGAGTTTTAGTAAATGACT | 57.517 | 33.333 | 0.00 | 0.00 | 38.03 | 3.41 |
4908 | 5101 | 8.515414 | AGTTTTAGTAAATGACTGAGATTTGCC | 58.485 | 33.333 | 0.00 | 0.00 | 39.39 | 4.52 |
4909 | 5102 | 8.515414 | GTTTTAGTAAATGACTGAGATTTGCCT | 58.485 | 33.333 | 0.00 | 0.00 | 39.39 | 4.75 |
4910 | 5103 | 8.635765 | TTTAGTAAATGACTGAGATTTGCCTT | 57.364 | 30.769 | 0.00 | 0.00 | 39.39 | 4.35 |
4911 | 5104 | 6.506500 | AGTAAATGACTGAGATTTGCCTTG | 57.493 | 37.500 | 0.00 | 0.00 | 36.87 | 3.61 |
4912 | 5105 | 3.863142 | AATGACTGAGATTTGCCTTGC | 57.137 | 42.857 | 0.00 | 0.00 | 0.00 | 4.01 |
4913 | 5106 | 1.159285 | TGACTGAGATTTGCCTTGCG | 58.841 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
4914 | 5107 | 0.179179 | GACTGAGATTTGCCTTGCGC | 60.179 | 55.000 | 0.00 | 0.00 | 38.31 | 6.09 |
4964 | 5157 | 5.858381 | TCAGAATAGAACAGCTGTTGAAGT | 58.142 | 37.500 | 35.67 | 21.58 | 38.56 | 3.01 |
4965 | 5158 | 6.993079 | TCAGAATAGAACAGCTGTTGAAGTA | 58.007 | 36.000 | 35.67 | 20.24 | 38.56 | 2.24 |
4966 | 5159 | 7.093354 | TCAGAATAGAACAGCTGTTGAAGTAG | 58.907 | 38.462 | 35.67 | 18.68 | 38.56 | 2.57 |
5046 | 5242 | 1.838112 | TCAGCGCATTGAATCCCTTT | 58.162 | 45.000 | 11.47 | 0.00 | 0.00 | 3.11 |
5156 | 5355 | 5.165676 | GGTCGTATTGTTCTGTACATGTCA | 58.834 | 41.667 | 0.00 | 0.00 | 36.44 | 3.58 |
5162 | 5361 | 4.521130 | TGTTCTGTACATGTCAGAGTCC | 57.479 | 45.455 | 20.08 | 15.05 | 41.87 | 3.85 |
5166 | 5365 | 3.010420 | CTGTACATGTCAGAGTCCGAGA | 58.990 | 50.000 | 15.93 | 0.00 | 35.20 | 4.04 |
5241 | 5440 | 2.218953 | CATCATGTGATGCAAAGGCC | 57.781 | 50.000 | 9.81 | 0.00 | 44.44 | 5.19 |
5250 | 5449 | 0.755327 | ATGCAAAGGCCGGGGTAATC | 60.755 | 55.000 | 2.18 | 0.00 | 40.13 | 1.75 |
5253 | 5452 | 3.709348 | AAAGGCCGGGGTAATCGCC | 62.709 | 63.158 | 2.18 | 0.00 | 42.32 | 5.54 |
5259 | 5458 | 1.433837 | CCGGGGTAATCGCCTTTTCG | 61.434 | 60.000 | 0.00 | 0.00 | 43.37 | 3.46 |
5352 | 5561 | 6.128553 | GCAGTCGAACAAACTCTCATAAATGA | 60.129 | 38.462 | 0.00 | 0.00 | 35.16 | 2.57 |
5355 | 5564 | 5.924254 | TCGAACAAACTCTCATAAATGACGT | 59.076 | 36.000 | 0.00 | 0.00 | 32.50 | 4.34 |
5456 | 5717 | 7.859891 | GAAAATGTCAACAAAAACATGTTCG | 57.140 | 32.000 | 12.39 | 6.32 | 41.44 | 3.95 |
5516 | 5777 | 9.669887 | AAATGGCATATGTTGTGATGTAAAAAT | 57.330 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
5578 | 5871 | 8.902806 | ACATATGTTGTTTTGTCAGAGAGAAAA | 58.097 | 29.630 | 1.41 | 0.00 | 33.74 | 2.29 |
5579 | 5872 | 9.734620 | CATATGTTGTTTTGTCAGAGAGAAAAA | 57.265 | 29.630 | 4.00 | 0.00 | 36.75 | 1.94 |
5676 | 5970 | 1.741528 | CACATAGGAGCATGTGCACA | 58.258 | 50.000 | 24.08 | 24.08 | 46.66 | 4.57 |
5678 | 5972 | 3.469739 | CACATAGGAGCATGTGCACATA | 58.530 | 45.455 | 30.92 | 15.70 | 46.66 | 2.29 |
5680 | 5974 | 2.916702 | TAGGAGCATGTGCACATAGG | 57.083 | 50.000 | 30.92 | 20.69 | 45.16 | 2.57 |
5681 | 5975 | 1.206878 | AGGAGCATGTGCACATAGGA | 58.793 | 50.000 | 30.92 | 3.82 | 45.16 | 2.94 |
5682 | 5976 | 1.140452 | AGGAGCATGTGCACATAGGAG | 59.860 | 52.381 | 30.92 | 19.63 | 45.16 | 3.69 |
5683 | 5977 | 0.942962 | GAGCATGTGCACATAGGAGC | 59.057 | 55.000 | 30.92 | 27.41 | 45.16 | 4.70 |
5728 | 6027 | 8.883954 | TCAATTATTGAAAACTGTTGCATTGA | 57.116 | 26.923 | 5.03 | 1.02 | 36.59 | 2.57 |
5729 | 6028 | 9.491675 | TCAATTATTGAAAACTGTTGCATTGAT | 57.508 | 25.926 | 5.03 | 0.00 | 36.59 | 2.57 |
5730 | 6029 | 9.749490 | CAATTATTGAAAACTGTTGCATTGATC | 57.251 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
5731 | 6030 | 7.887996 | TTATTGAAAACTGTTGCATTGATCC | 57.112 | 32.000 | 0.00 | 0.00 | 0.00 | 3.36 |
5732 | 6031 | 4.933505 | TGAAAACTGTTGCATTGATCCA | 57.066 | 36.364 | 0.00 | 0.00 | 0.00 | 3.41 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
38 | 39 | 3.260884 | TCTCAGCCGAGTAAAAGACCAAT | 59.739 | 43.478 | 0.00 | 0.00 | 40.44 | 3.16 |
96 | 97 | 1.147153 | GCTACTGGAGTGCCCATCC | 59.853 | 63.158 | 0.00 | 0.00 | 45.57 | 3.51 |
242 | 248 | 4.486503 | CCCTGCTCTGCTCTGGCC | 62.487 | 72.222 | 0.00 | 0.00 | 37.74 | 5.36 |
424 | 443 | 3.768922 | GAGGCGAGGACTGCTGCT | 61.769 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
460 | 479 | 6.045955 | TCTCCATTTAACCAGTTTTGTTTGC | 58.954 | 36.000 | 0.00 | 0.00 | 0.00 | 3.68 |
558 | 577 | 2.522436 | TCCGAGTGTGGGGAACGT | 60.522 | 61.111 | 0.00 | 0.00 | 0.00 | 3.99 |
559 | 578 | 2.261671 | CTCCGAGTGTGGGGAACG | 59.738 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
561 | 580 | 3.319198 | GCCTCCGAGTGTGGGGAA | 61.319 | 66.667 | 0.00 | 0.00 | 0.00 | 3.97 |
564 | 583 | 3.064987 | CTACGCCTCCGAGTGTGGG | 62.065 | 68.421 | 0.00 | 0.00 | 38.29 | 4.61 |
565 | 584 | 2.490217 | CTACGCCTCCGAGTGTGG | 59.510 | 66.667 | 0.00 | 0.00 | 38.29 | 4.17 |
566 | 585 | 2.202623 | GCTACGCCTCCGAGTGTG | 60.203 | 66.667 | 0.00 | 0.00 | 38.29 | 3.82 |
567 | 586 | 3.450115 | GGCTACGCCTCCGAGTGT | 61.450 | 66.667 | 0.00 | 0.00 | 46.69 | 3.55 |
578 | 597 | 4.941325 | TCTAATAGTATCTGCGGCTACG | 57.059 | 45.455 | 0.00 | 0.00 | 44.63 | 3.51 |
579 | 598 | 6.372103 | TCTCTTCTAATAGTATCTGCGGCTAC | 59.628 | 42.308 | 0.00 | 0.00 | 0.00 | 3.58 |
580 | 599 | 6.473758 | TCTCTTCTAATAGTATCTGCGGCTA | 58.526 | 40.000 | 0.00 | 0.00 | 0.00 | 3.93 |
581 | 600 | 5.317808 | TCTCTTCTAATAGTATCTGCGGCT | 58.682 | 41.667 | 0.00 | 0.00 | 0.00 | 5.52 |
582 | 601 | 5.630661 | TCTCTTCTAATAGTATCTGCGGC | 57.369 | 43.478 | 0.00 | 0.00 | 0.00 | 6.53 |
583 | 602 | 6.092944 | ACGATCTCTTCTAATAGTATCTGCGG | 59.907 | 42.308 | 0.00 | 0.00 | 0.00 | 5.69 |
584 | 603 | 7.064134 | AGACGATCTCTTCTAATAGTATCTGCG | 59.936 | 40.741 | 0.00 | 0.00 | 0.00 | 5.18 |
585 | 604 | 8.263940 | AGACGATCTCTTCTAATAGTATCTGC | 57.736 | 38.462 | 0.00 | 0.00 | 0.00 | 4.26 |
590 | 609 | 9.926158 | AACGATAGACGATCTCTTCTAATAGTA | 57.074 | 33.333 | 0.00 | 0.00 | 45.77 | 1.82 |
591 | 610 | 8.714179 | CAACGATAGACGATCTCTTCTAATAGT | 58.286 | 37.037 | 0.00 | 0.00 | 45.77 | 2.12 |
592 | 611 | 8.714179 | ACAACGATAGACGATCTCTTCTAATAG | 58.286 | 37.037 | 0.00 | 0.00 | 45.77 | 1.73 |
593 | 612 | 8.604640 | ACAACGATAGACGATCTCTTCTAATA | 57.395 | 34.615 | 0.00 | 0.00 | 45.77 | 0.98 |
594 | 613 | 7.499321 | ACAACGATAGACGATCTCTTCTAAT | 57.501 | 36.000 | 0.00 | 0.00 | 45.77 | 1.73 |
595 | 614 | 6.922247 | ACAACGATAGACGATCTCTTCTAA | 57.078 | 37.500 | 0.00 | 0.00 | 45.77 | 2.10 |
610 | 629 | 1.134340 | GCACCCACCCATACAACGATA | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
611 | 630 | 0.393808 | GCACCCACCCATACAACGAT | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 3.73 |
612 | 631 | 1.003112 | GCACCCACCCATACAACGA | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
613 | 632 | 2.395360 | CGCACCCACCCATACAACG | 61.395 | 63.158 | 0.00 | 0.00 | 0.00 | 4.10 |
614 | 633 | 1.302993 | ACGCACCCACCCATACAAC | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
615 | 634 | 1.302913 | CACGCACCCACCCATACAA | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 2.41 |
616 | 635 | 2.349376 | CACGCACCCACCCATACA | 59.651 | 61.111 | 0.00 | 0.00 | 0.00 | 2.29 |
617 | 636 | 2.038269 | CACACGCACCCACCCATAC | 61.038 | 63.158 | 0.00 | 0.00 | 0.00 | 2.39 |
618 | 637 | 2.349376 | CACACGCACCCACCCATA | 59.651 | 61.111 | 0.00 | 0.00 | 0.00 | 2.74 |
619 | 638 | 4.659172 | CCACACGCACCCACCCAT | 62.659 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
626 | 645 | 3.670377 | GAAAGGCCCACACGCACC | 61.670 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
627 | 646 | 3.670377 | GGAAAGGCCCACACGCAC | 61.670 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
716 | 737 | 4.468615 | GCACTCGCTCGACTCGCT | 62.469 | 66.667 | 0.00 | 0.00 | 34.30 | 4.93 |
723 | 744 | 2.036556 | AATTTGTTTGCACTCGCTCG | 57.963 | 45.000 | 0.00 | 0.00 | 39.64 | 5.03 |
845 | 878 | 3.834231 | GGGGTTGATGGGGAAATGATATG | 59.166 | 47.826 | 0.00 | 0.00 | 0.00 | 1.78 |
871 | 904 | 0.456221 | GATGATGACACCGACGGACT | 59.544 | 55.000 | 23.38 | 4.05 | 0.00 | 3.85 |
900 | 933 | 1.496403 | GCTTATAAGCGGCCGTGTCC | 61.496 | 60.000 | 28.70 | 10.05 | 42.88 | 4.02 |
933 | 966 | 3.921677 | TCACCACAGTCCTAAAACGATC | 58.078 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
934 | 967 | 4.553330 | ATCACCACAGTCCTAAAACGAT | 57.447 | 40.909 | 0.00 | 0.00 | 0.00 | 3.73 |
935 | 968 | 4.062293 | CAATCACCACAGTCCTAAAACGA | 58.938 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
936 | 969 | 3.188460 | CCAATCACCACAGTCCTAAAACG | 59.812 | 47.826 | 0.00 | 0.00 | 0.00 | 3.60 |
937 | 970 | 3.057526 | GCCAATCACCACAGTCCTAAAAC | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
938 | 971 | 3.153919 | GCCAATCACCACAGTCCTAAAA | 58.846 | 45.455 | 0.00 | 0.00 | 0.00 | 1.52 |
939 | 972 | 2.107378 | TGCCAATCACCACAGTCCTAAA | 59.893 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
941 | 974 | 1.278985 | CTGCCAATCACCACAGTCCTA | 59.721 | 52.381 | 0.00 | 0.00 | 0.00 | 2.94 |
942 | 975 | 0.037303 | CTGCCAATCACCACAGTCCT | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
943 | 976 | 0.250901 | ACTGCCAATCACCACAGTCC | 60.251 | 55.000 | 0.00 | 0.00 | 39.04 | 3.85 |
944 | 977 | 1.267806 | CAACTGCCAATCACCACAGTC | 59.732 | 52.381 | 0.00 | 0.00 | 42.34 | 3.51 |
945 | 978 | 1.321474 | CAACTGCCAATCACCACAGT | 58.679 | 50.000 | 0.00 | 0.00 | 44.96 | 3.55 |
1005 | 1045 | 1.531365 | CAGCTTGGACCCCTTGCAA | 60.531 | 57.895 | 0.00 | 0.00 | 33.86 | 4.08 |
1359 | 1402 | 4.308458 | TGGAGTTGGTCGTGGCGG | 62.308 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1361 | 1404 | 2.668550 | GGTGGAGTTGGTCGTGGC | 60.669 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
1366 | 1409 | 2.032071 | CGGGTGGTGGAGTTGGTC | 59.968 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
1370 | 1413 | 4.265056 | GGTGCGGGTGGTGGAGTT | 62.265 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1390 | 1433 | 2.126228 | CGGGAACTGAAGCGCGTA | 60.126 | 61.111 | 8.43 | 0.00 | 36.31 | 4.42 |
1422 | 1465 | 1.202313 | GGCTCAGGCTCGTAACTGTAG | 60.202 | 57.143 | 0.00 | 0.00 | 38.73 | 2.74 |
1426 | 1475 | 1.592223 | GTGGCTCAGGCTCGTAACT | 59.408 | 57.895 | 0.00 | 0.00 | 38.73 | 2.24 |
1428 | 1477 | 2.978824 | GGTGGCTCAGGCTCGTAA | 59.021 | 61.111 | 0.00 | 0.00 | 38.73 | 3.18 |
1698 | 1747 | 1.578583 | AACAGTAGTTGTCGTGCACC | 58.421 | 50.000 | 12.15 | 0.00 | 39.73 | 5.01 |
2004 | 2053 | 4.373116 | TGAGTGCGAACGGAGGCC | 62.373 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
2013 | 2062 | 1.532604 | ATGACTTCCGGTGAGTGCGA | 61.533 | 55.000 | 16.09 | 3.09 | 0.00 | 5.10 |
2016 | 2065 | 0.458543 | CCGATGACTTCCGGTGAGTG | 60.459 | 60.000 | 16.09 | 4.09 | 40.78 | 3.51 |
2085 | 2134 | 4.457496 | ACCGCCCAGACTGCATCG | 62.457 | 66.667 | 0.00 | 0.00 | 0.00 | 3.84 |
2105 | 2154 | 1.453379 | TCGACCTCCAGGATCGGTC | 60.453 | 63.158 | 15.40 | 15.40 | 42.90 | 4.79 |
2220 | 2269 | 5.163713 | GCCAGTTCTAGAAGCAACAAATAGG | 60.164 | 44.000 | 5.12 | 0.00 | 0.00 | 2.57 |
2449 | 2504 | 1.806542 | CAACCTCCAACATCCAACTCG | 59.193 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
2503 | 2558 | 1.428869 | AGAGTTTCTGCAGGGTGACT | 58.571 | 50.000 | 15.13 | 12.29 | 0.00 | 3.41 |
2685 | 2747 | 8.746530 | CCAGTAGTATTTAGTAGGAGTCAAACA | 58.253 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
2686 | 2748 | 8.747471 | ACCAGTAGTATTTAGTAGGAGTCAAAC | 58.253 | 37.037 | 0.00 | 0.00 | 0.00 | 2.93 |
2688 | 2750 | 8.111545 | TCACCAGTAGTATTTAGTAGGAGTCAA | 58.888 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
2689 | 2751 | 7.555554 | GTCACCAGTAGTATTTAGTAGGAGTCA | 59.444 | 40.741 | 0.00 | 0.00 | 0.00 | 3.41 |
2764 | 2826 | 5.944049 | CACTATGAAAAGATGCATTGTGC | 57.056 | 39.130 | 0.00 | 0.00 | 45.29 | 4.57 |
2765 | 2827 | 4.802039 | GGCACTATGAAAAGATGCATTGTG | 59.198 | 41.667 | 0.00 | 0.00 | 44.95 | 3.33 |
2766 | 2828 | 4.463539 | TGGCACTATGAAAAGATGCATTGT | 59.536 | 37.500 | 0.00 | 0.00 | 38.05 | 2.71 |
2767 | 2829 | 5.001237 | TGGCACTATGAAAAGATGCATTG | 57.999 | 39.130 | 0.00 | 0.00 | 38.05 | 2.82 |
2768 | 2830 | 5.128171 | ACATGGCACTATGAAAAGATGCATT | 59.872 | 36.000 | 0.00 | 0.00 | 38.05 | 3.56 |
2769 | 2831 | 4.647853 | ACATGGCACTATGAAAAGATGCAT | 59.352 | 37.500 | 0.00 | 0.00 | 38.05 | 3.96 |
2770 | 2832 | 4.018490 | ACATGGCACTATGAAAAGATGCA | 58.982 | 39.130 | 0.00 | 0.00 | 38.05 | 3.96 |
2771 | 2833 | 4.644103 | ACATGGCACTATGAAAAGATGC | 57.356 | 40.909 | 0.00 | 0.00 | 35.51 | 3.91 |
2776 | 2838 | 3.573598 | CGCAAACATGGCACTATGAAAA | 58.426 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
2810 | 2872 | 7.284944 | GGATCAACATTTCATCTTTCTGGAGAT | 59.715 | 37.037 | 0.00 | 0.00 | 36.84 | 2.75 |
2811 | 2873 | 6.600822 | GGATCAACATTTCATCTTTCTGGAGA | 59.399 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
2812 | 2874 | 6.602406 | AGGATCAACATTTCATCTTTCTGGAG | 59.398 | 38.462 | 0.00 | 0.00 | 0.00 | 3.86 |
2814 | 2876 | 6.770746 | AGGATCAACATTTCATCTTTCTGG | 57.229 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
2897 | 2983 | 9.530633 | AAAGGAGCTTTTACACGATATTACTAG | 57.469 | 33.333 | 0.00 | 0.00 | 28.27 | 2.57 |
2962 | 3048 | 8.325282 | GGTTAAATTTCTTTAAATATGGCACGC | 58.675 | 33.333 | 0.00 | 0.00 | 38.28 | 5.34 |
3137 | 3233 | 9.346725 | GAGCCAACAAGATAGTTTAAATGAAAG | 57.653 | 33.333 | 0.00 | 0.00 | 0.00 | 2.62 |
3153 | 3249 | 3.435671 | CCGTTTACTAAGGAGCCAACAAG | 59.564 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
3214 | 3310 | 3.440173 | AGCACGTCCCACATTATTGAAAG | 59.560 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
3271 | 3367 | 0.609662 | ATAGTTAACACGGGTGCGGT | 59.390 | 50.000 | 8.61 | 0.00 | 0.00 | 5.68 |
3272 | 3368 | 1.395608 | CAATAGTTAACACGGGTGCGG | 59.604 | 52.381 | 8.61 | 0.00 | 0.00 | 5.69 |
3273 | 3369 | 2.070783 | ACAATAGTTAACACGGGTGCG | 58.929 | 47.619 | 8.61 | 0.00 | 0.00 | 5.34 |
3274 | 3370 | 2.413634 | GCACAATAGTTAACACGGGTGC | 60.414 | 50.000 | 21.29 | 21.29 | 42.73 | 5.01 |
3290 | 3386 | 9.624697 | GAACAAAAATAATCAGATGTAGCACAA | 57.375 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
3318 | 3414 | 4.682563 | TCTTCAGACTGGAAGAGGAGAAT | 58.317 | 43.478 | 1.81 | 0.00 | 46.16 | 2.40 |
3601 | 3697 | 2.560105 | AGTGTACCGACAGGGAACTAAC | 59.440 | 50.000 | 0.00 | 0.00 | 43.47 | 2.34 |
3629 | 3725 | 2.172717 | AGCAGACAACCAGTGTAAAGGT | 59.827 | 45.455 | 0.00 | 0.00 | 41.96 | 3.50 |
3677 | 3776 | 4.313020 | TCTTTACGGAGGGAGTACTTCT | 57.687 | 45.455 | 0.01 | 0.06 | 0.00 | 2.85 |
3694 | 3793 | 9.884465 | GTGATCTAAATGCGCTTATATTTCTTT | 57.116 | 29.630 | 9.73 | 0.00 | 0.00 | 2.52 |
3695 | 3794 | 8.223769 | CGTGATCTAAATGCGCTTATATTTCTT | 58.776 | 33.333 | 9.73 | 0.00 | 0.00 | 2.52 |
3696 | 3795 | 7.598869 | TCGTGATCTAAATGCGCTTATATTTCT | 59.401 | 33.333 | 9.73 | 0.00 | 0.00 | 2.52 |
3697 | 3796 | 7.729836 | TCGTGATCTAAATGCGCTTATATTTC | 58.270 | 34.615 | 9.73 | 0.00 | 0.00 | 2.17 |
3698 | 3797 | 7.385205 | ACTCGTGATCTAAATGCGCTTATATTT | 59.615 | 33.333 | 9.73 | 8.84 | 0.00 | 1.40 |
3700 | 3799 | 6.390721 | ACTCGTGATCTAAATGCGCTTATAT | 58.609 | 36.000 | 9.73 | 0.00 | 0.00 | 0.86 |
3702 | 3801 | 4.621991 | ACTCGTGATCTAAATGCGCTTAT | 58.378 | 39.130 | 9.73 | 0.00 | 0.00 | 1.73 |
3704 | 3803 | 2.893637 | ACTCGTGATCTAAATGCGCTT | 58.106 | 42.857 | 9.73 | 0.00 | 0.00 | 4.68 |
3705 | 3804 | 2.586258 | ACTCGTGATCTAAATGCGCT | 57.414 | 45.000 | 9.73 | 0.00 | 0.00 | 5.92 |
3707 | 3806 | 5.890110 | ATGTTACTCGTGATCTAAATGCG | 57.110 | 39.130 | 0.00 | 0.00 | 0.00 | 4.73 |
3708 | 3807 | 7.222805 | TGAGAATGTTACTCGTGATCTAAATGC | 59.777 | 37.037 | 0.00 | 0.00 | 37.22 | 3.56 |
3709 | 3808 | 8.634475 | TGAGAATGTTACTCGTGATCTAAATG | 57.366 | 34.615 | 0.00 | 0.00 | 37.22 | 2.32 |
3710 | 3809 | 8.470805 | ACTGAGAATGTTACTCGTGATCTAAAT | 58.529 | 33.333 | 0.00 | 0.00 | 37.22 | 1.40 |
3711 | 3810 | 7.827701 | ACTGAGAATGTTACTCGTGATCTAAA | 58.172 | 34.615 | 0.00 | 0.00 | 37.22 | 1.85 |
3712 | 3811 | 7.392494 | ACTGAGAATGTTACTCGTGATCTAA | 57.608 | 36.000 | 0.00 | 0.00 | 37.22 | 2.10 |
3713 | 3812 | 6.038382 | GGACTGAGAATGTTACTCGTGATCTA | 59.962 | 42.308 | 0.00 | 0.00 | 37.22 | 1.98 |
3714 | 3813 | 5.163602 | GGACTGAGAATGTTACTCGTGATCT | 60.164 | 44.000 | 0.00 | 0.00 | 37.22 | 2.75 |
3715 | 3814 | 5.038033 | GGACTGAGAATGTTACTCGTGATC | 58.962 | 45.833 | 0.00 | 0.00 | 37.22 | 2.92 |
3716 | 3815 | 4.462834 | TGGACTGAGAATGTTACTCGTGAT | 59.537 | 41.667 | 0.00 | 0.00 | 37.22 | 3.06 |
3717 | 3816 | 3.824443 | TGGACTGAGAATGTTACTCGTGA | 59.176 | 43.478 | 0.00 | 0.00 | 37.22 | 4.35 |
3718 | 3817 | 4.169508 | CTGGACTGAGAATGTTACTCGTG | 58.830 | 47.826 | 0.00 | 0.00 | 37.22 | 4.35 |
3719 | 3818 | 3.827302 | ACTGGACTGAGAATGTTACTCGT | 59.173 | 43.478 | 0.00 | 0.00 | 37.22 | 4.18 |
3720 | 3819 | 4.442375 | ACTGGACTGAGAATGTTACTCG | 57.558 | 45.455 | 0.00 | 0.00 | 37.22 | 4.18 |
3760 | 3859 | 2.845363 | AAAAATTTCCAGGCAGCTGG | 57.155 | 45.000 | 17.12 | 2.74 | 45.53 | 4.85 |
3801 | 3900 | 1.195115 | CAGGGCTGTAGAGTTAGGCA | 58.805 | 55.000 | 0.00 | 0.00 | 40.87 | 4.75 |
3802 | 3901 | 0.179070 | GCAGGGCTGTAGAGTTAGGC | 60.179 | 60.000 | 0.00 | 0.00 | 38.62 | 3.93 |
3803 | 3902 | 1.195115 | TGCAGGGCTGTAGAGTTAGG | 58.805 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3804 | 3903 | 3.550437 | AATGCAGGGCTGTAGAGTTAG | 57.450 | 47.619 | 0.00 | 0.00 | 0.00 | 2.34 |
3805 | 3904 | 4.224147 | TGTAAATGCAGGGCTGTAGAGTTA | 59.776 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
3806 | 3905 | 2.887151 | AAATGCAGGGCTGTAGAGTT | 57.113 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3807 | 3906 | 2.571653 | TGTAAATGCAGGGCTGTAGAGT | 59.428 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
3808 | 3907 | 3.201290 | CTGTAAATGCAGGGCTGTAGAG | 58.799 | 50.000 | 0.00 | 0.00 | 33.11 | 2.43 |
3862 | 3972 | 5.812642 | GCATGTAGGGATATTGATTACTCGG | 59.187 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3887 | 3997 | 5.370289 | TCAGGAAAGTTCACCTAGGGTAAAA | 59.630 | 40.000 | 14.81 | 0.00 | 32.11 | 1.52 |
3917 | 4027 | 4.860072 | AGATTGCAAAGAAAGAAACCGAC | 58.140 | 39.130 | 1.71 | 0.00 | 0.00 | 4.79 |
4114 | 4225 | 2.746362 | CAAGTCCACTTCAAGCTCCATC | 59.254 | 50.000 | 0.00 | 0.00 | 33.11 | 3.51 |
4219 | 4330 | 3.053320 | TCTCCTCCTGCTGATAGTTGAGA | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
4372 | 4483 | 1.372499 | GTTGCGTACGCTGGAGACA | 60.372 | 57.895 | 36.99 | 15.67 | 42.51 | 3.41 |
4375 | 4486 | 2.048597 | TGGTTGCGTACGCTGGAG | 60.049 | 61.111 | 36.99 | 0.00 | 42.51 | 3.86 |
4409 | 4520 | 0.250038 | AGCTCGCTTTGCTCAACAGA | 60.250 | 50.000 | 0.00 | 0.00 | 35.67 | 3.41 |
4411 | 4522 | 0.532640 | TCAGCTCGCTTTGCTCAACA | 60.533 | 50.000 | 0.00 | 0.00 | 38.92 | 3.33 |
4419 | 4530 | 2.924290 | GTTACGAAGATCAGCTCGCTTT | 59.076 | 45.455 | 10.65 | 0.00 | 0.00 | 3.51 |
4438 | 4549 | 2.583143 | CACTTTTCTCTTTCCCGGGTT | 58.417 | 47.619 | 22.86 | 0.00 | 0.00 | 4.11 |
4453 | 4564 | 3.652869 | TCTCCAGAATCCTGTTCCACTTT | 59.347 | 43.478 | 0.00 | 0.00 | 38.74 | 2.66 |
4518 | 4629 | 2.282745 | GCACAAGGGCCAGCTTCT | 60.283 | 61.111 | 6.18 | 0.00 | 0.00 | 2.85 |
4678 | 4789 | 1.205655 | TCTTCTTCGGCATGTCTCAGG | 59.794 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
4690 | 4801 | 3.329386 | TCTGGACAGCATTTCTTCTTCG | 58.671 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
4725 | 4836 | 3.953612 | AGATGCAAAATCGGGCTATGAAA | 59.046 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
4735 | 4846 | 3.434641 | AGTGTCTGTCAGATGCAAAATCG | 59.565 | 43.478 | 5.68 | 0.00 | 0.00 | 3.34 |
4751 | 4862 | 3.838244 | TGTTTGTTGGCTCTAGTGTCT | 57.162 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
4752 | 4863 | 4.789802 | GCTTTGTTTGTTGGCTCTAGTGTC | 60.790 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
4753 | 4864 | 3.066760 | GCTTTGTTTGTTGGCTCTAGTGT | 59.933 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
4754 | 4865 | 3.316308 | AGCTTTGTTTGTTGGCTCTAGTG | 59.684 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
4847 | 5040 | 9.147732 | AGAATTTCTCCACCAAAACTAAAATCT | 57.852 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
4892 | 5085 | 2.163010 | CGCAAGGCAAATCTCAGTCATT | 59.837 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
4893 | 5086 | 1.741706 | CGCAAGGCAAATCTCAGTCAT | 59.258 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
4894 | 5087 | 1.159285 | CGCAAGGCAAATCTCAGTCA | 58.841 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4908 | 5101 | 2.716828 | CCTACACGACGTGCGCAAG | 61.717 | 63.158 | 27.11 | 21.97 | 46.04 | 4.01 |
4909 | 5102 | 2.731721 | CCTACACGACGTGCGCAA | 60.732 | 61.111 | 27.11 | 9.93 | 46.04 | 4.85 |
4913 | 5106 | 2.664436 | GGTTGCCTACACGACGTGC | 61.664 | 63.158 | 27.11 | 14.13 | 36.98 | 5.34 |
4914 | 5107 | 2.025418 | GGGTTGCCTACACGACGTG | 61.025 | 63.158 | 25.72 | 25.72 | 39.75 | 4.49 |
4915 | 5108 | 1.751349 | AAGGGTTGCCTACACGACGT | 61.751 | 55.000 | 0.00 | 0.00 | 34.43 | 4.34 |
4916 | 5109 | 1.005394 | AAGGGTTGCCTACACGACG | 60.005 | 57.895 | 0.00 | 0.00 | 34.43 | 5.12 |
4917 | 5110 | 0.953960 | CCAAGGGTTGCCTACACGAC | 60.954 | 60.000 | 0.00 | 0.00 | 34.43 | 4.34 |
4919 | 5112 | 0.953960 | GACCAAGGGTTGCCTACACG | 60.954 | 60.000 | 0.00 | 0.00 | 35.25 | 4.49 |
4920 | 5113 | 0.608308 | GGACCAAGGGTTGCCTACAC | 60.608 | 60.000 | 0.00 | 0.00 | 35.25 | 2.90 |
4921 | 5114 | 1.063070 | TGGACCAAGGGTTGCCTACA | 61.063 | 55.000 | 0.00 | 0.00 | 35.25 | 2.74 |
4922 | 5115 | 0.331616 | ATGGACCAAGGGTTGCCTAC | 59.668 | 55.000 | 0.00 | 0.00 | 35.25 | 3.18 |
4923 | 5116 | 0.623723 | GATGGACCAAGGGTTGCCTA | 59.376 | 55.000 | 0.00 | 0.00 | 35.25 | 3.93 |
4964 | 5157 | 4.286032 | CCTGCCCATATTTACCTGCTACTA | 59.714 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
4965 | 5158 | 3.073062 | CCTGCCCATATTTACCTGCTACT | 59.927 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
4966 | 5159 | 3.181443 | ACCTGCCCATATTTACCTGCTAC | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.58 |
5008 | 5204 | 4.036027 | GCTGAATATTGCACAGTACATGCT | 59.964 | 41.667 | 19.31 | 6.45 | 43.77 | 3.79 |
5156 | 5355 | 5.419155 | TCAACATAATTCACTCTCGGACTCT | 59.581 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
5162 | 5361 | 8.229811 | TGACAATTTCAACATAATTCACTCTCG | 58.770 | 33.333 | 0.00 | 0.00 | 0.00 | 4.04 |
5236 | 5435 | 4.185286 | GGCGATTACCCCGGCCTT | 62.185 | 66.667 | 0.00 | 0.00 | 45.18 | 4.35 |
5240 | 5439 | 1.433837 | CGAAAAGGCGATTACCCCGG | 61.434 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
5241 | 5440 | 0.741927 | ACGAAAAGGCGATTACCCCG | 60.742 | 55.000 | 0.00 | 0.00 | 34.83 | 5.73 |
5315 | 5523 | 1.990799 | TCGACTGCAACATCTAACCG | 58.009 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
5352 | 5561 | 3.096852 | TGAATACCTGATCTGGTGACGT | 58.903 | 45.455 | 29.04 | 14.13 | 41.05 | 4.34 |
5355 | 5564 | 5.875224 | TGTTTTGAATACCTGATCTGGTGA | 58.125 | 37.500 | 29.04 | 15.94 | 41.05 | 4.02 |
5431 | 5690 | 7.330700 | ACGAACATGTTTTTGTTGACATTTTCT | 59.669 | 29.630 | 13.36 | 0.00 | 39.24 | 2.52 |
5432 | 5691 | 7.422179 | CACGAACATGTTTTTGTTGACATTTTC | 59.578 | 33.333 | 13.36 | 5.67 | 39.85 | 2.29 |
5456 | 5717 | 6.491394 | ACATAACACACATGTACAAACACAC | 58.509 | 36.000 | 0.00 | 0.00 | 38.45 | 3.82 |
5579 | 5872 | 9.353999 | GTTTGTGTCTTCTAAATGTGAGTTTTT | 57.646 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
5580 | 5873 | 8.519526 | TGTTTGTGTCTTCTAAATGTGAGTTTT | 58.480 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
5676 | 5970 | 3.893326 | GGGCAATGTTTTTGCTCCTAT | 57.107 | 42.857 | 9.86 | 0.00 | 44.36 | 2.57 |
5680 | 5974 | 3.231734 | GGGGGCAATGTTTTTGCTC | 57.768 | 52.632 | 9.86 | 5.99 | 44.82 | 4.26 |
5707 | 6006 | 7.440198 | TGGATCAATGCAACAGTTTTCAATAA | 58.560 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.