Multiple sequence alignment - TraesCS6B01G271400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G271400 chr6B 100.000 3137 0 0 1 3137 489541747 489538611 0.000000e+00 5794.0
1 TraesCS6B01G271400 chr6D 95.279 1991 77 12 908 2889 331531359 331533341 0.000000e+00 3140.0
2 TraesCS6B01G271400 chr6D 92.424 66 5 0 850 915 331530244 331530309 9.260000e-16 95.3
3 TraesCS6B01G271400 chr6A 91.850 2233 132 23 846 3064 470411422 470413618 0.000000e+00 3070.0
4 TraesCS6B01G271400 chr6A 86.567 67 7 1 223 287 596077806 596077740 4.340000e-09 73.1
5 TraesCS6B01G271400 chr6A 94.737 38 2 0 3071 3108 470415547 470415584 3.380000e-05 60.2
6 TraesCS6B01G271400 chr6A 100.000 28 0 0 2900 2927 4628272 4628245 6.000000e-03 52.8
7 TraesCS6B01G271400 chr4B 88.701 177 18 2 607 781 604651479 604651303 6.810000e-52 215.0
8 TraesCS6B01G271400 chr4B 73.675 604 119 20 16 586 13121976 13122572 6.860000e-47 198.0
9 TraesCS6B01G271400 chr4B 86.517 178 20 4 607 781 507476211 507476035 3.190000e-45 193.0
10 TraesCS6B01G271400 chr2B 74.270 548 113 24 57 591 419629606 419629074 4.100000e-49 206.0
11 TraesCS6B01G271400 chr2B 77.885 208 38 7 299 501 45606586 45606382 4.250000e-24 122.0
12 TraesCS6B01G271400 chr2B 78.102 137 26 3 452 586 563314035 563314169 2.000000e-12 84.2
13 TraesCS6B01G271400 chr3B 88.623 167 16 3 607 772 455518084 455517920 1.910000e-47 200.0
14 TraesCS6B01G271400 chr3B 89.677 155 15 1 607 761 647333891 647334044 2.470000e-46 196.0
15 TraesCS6B01G271400 chr1D 87.209 172 20 2 608 779 125832354 125832185 8.880000e-46 195.0
16 TraesCS6B01G271400 chr1D 86.517 178 20 4 607 781 432293968 432293792 3.190000e-45 193.0
17 TraesCS6B01G271400 chr7D 86.441 177 22 2 607 781 21529284 21529108 3.190000e-45 193.0
18 TraesCS6B01G271400 chr5A 89.032 155 17 0 607 761 82350395 82350549 3.190000e-45 193.0
19 TraesCS6B01G271400 chr5A 73.510 453 102 15 141 586 25751716 25752157 4.190000e-34 156.0
20 TraesCS6B01G271400 chr5A 72.188 489 97 25 82 535 4049804 4050288 2.560000e-21 113.0
21 TraesCS6B01G271400 chr2D 89.032 155 17 0 607 761 506706463 506706617 3.190000e-45 193.0
22 TraesCS6B01G271400 chr2D 76.037 217 38 10 299 513 28363923 28363719 1.990000e-17 100.0
23 TraesCS6B01G271400 chr2D 100.000 28 0 0 2900 2927 234361034 234361061 6.000000e-03 52.8
24 TraesCS6B01G271400 chr7B 74.245 497 100 18 97 586 380077323 380076848 1.920000e-42 183.0
25 TraesCS6B01G271400 chr7B 74.607 445 92 18 115 552 632911444 632911874 3.220000e-40 176.0
26 TraesCS6B01G271400 chr7B 72.012 343 72 18 141 464 75852679 75853016 2.590000e-11 80.5
27 TraesCS6B01G271400 chr7B 93.023 43 3 0 3071 3113 533775255 533775297 2.610000e-06 63.9
28 TraesCS6B01G271400 chr7B 100.000 28 0 0 2900 2927 245218610 245218583 6.000000e-03 52.8
29 TraesCS6B01G271400 chr7A 80.909 220 39 2 334 551 84404959 84405177 1.500000e-38 171.0
30 TraesCS6B01G271400 chr5B 84.848 165 20 4 608 770 313387458 313387619 9.000000e-36 161.0
31 TraesCS6B01G271400 chr5B 100.000 29 0 0 2900 2928 296852231 296852203 2.000000e-03 54.7
32 TraesCS6B01G271400 chr5D 74.201 438 87 19 136 553 495020571 495020140 3.240000e-35 159.0
33 TraesCS6B01G271400 chr5D 80.769 208 36 4 382 586 551470668 551470462 3.240000e-35 159.0
34 TraesCS6B01G271400 chr3A 75.000 320 60 15 51 354 266455915 266455600 2.540000e-26 130.0
35 TraesCS6B01G271400 chr3A 91.489 47 2 1 243 287 229156968 229157014 2.610000e-06 63.9
36 TraesCS6B01G271400 chr4D 76.471 238 49 6 347 580 466881071 466881305 4.250000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G271400 chr6B 489538611 489541747 3136 True 5794.00 5794 100.0000 1 3137 1 chr6B.!!$R1 3136
1 TraesCS6B01G271400 chr6D 331530244 331533341 3097 False 1617.65 3140 93.8515 850 2889 2 chr6D.!!$F1 2039
2 TraesCS6B01G271400 chr6A 470411422 470415584 4162 False 1565.10 3070 93.2935 846 3108 2 chr6A.!!$F1 2262
3 TraesCS6B01G271400 chr2B 419629074 419629606 532 True 206.00 206 74.2700 57 591 1 chr2B.!!$R2 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 490 0.036306 AAGTTTTGTCCGGCTCCGAT 59.964 50.0 10.28 0.0 42.83 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 3291 1.888512 ACATAGGCAAGTGCAAAGGTG 59.111 47.619 5.52 0.0 44.36 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.488048 TTTTTGTAGTGCATGCGGC 57.512 47.368 14.09 8.63 45.13 6.53
20 21 0.958091 TTTTTGTAGTGCATGCGGCT 59.042 45.000 14.09 15.75 45.15 5.52
21 22 1.814793 TTTTGTAGTGCATGCGGCTA 58.185 45.000 14.09 14.71 45.15 3.93
22 23 1.368641 TTTGTAGTGCATGCGGCTAG 58.631 50.000 18.31 0.00 45.15 3.42
23 24 0.461870 TTGTAGTGCATGCGGCTAGG 60.462 55.000 18.31 0.00 45.15 3.02
24 25 1.595382 GTAGTGCATGCGGCTAGGG 60.595 63.158 18.31 0.00 45.15 3.53
25 26 2.063979 TAGTGCATGCGGCTAGGGT 61.064 57.895 14.09 0.00 45.15 4.34
26 27 1.622607 TAGTGCATGCGGCTAGGGTT 61.623 55.000 14.09 0.00 45.15 4.11
27 28 2.046285 GTGCATGCGGCTAGGGTTT 61.046 57.895 14.09 0.00 45.15 3.27
28 29 1.304052 TGCATGCGGCTAGGGTTTT 60.304 52.632 14.09 0.00 45.15 2.43
29 30 0.897863 TGCATGCGGCTAGGGTTTTT 60.898 50.000 14.09 0.00 45.15 1.94
30 31 0.179137 GCATGCGGCTAGGGTTTTTC 60.179 55.000 0.00 0.00 40.25 2.29
31 32 0.455815 CATGCGGCTAGGGTTTTTCC 59.544 55.000 0.00 0.00 0.00 3.13
32 33 0.331616 ATGCGGCTAGGGTTTTTCCT 59.668 50.000 0.00 0.00 40.79 3.36
33 34 0.322187 TGCGGCTAGGGTTTTTCCTC 60.322 55.000 0.00 0.00 38.30 3.71
34 35 1.030488 GCGGCTAGGGTTTTTCCTCC 61.030 60.000 0.00 0.00 38.30 4.30
35 36 0.393944 CGGCTAGGGTTTTTCCTCCC 60.394 60.000 0.00 0.00 43.71 4.30
39 40 3.060000 GGGTTTTTCCTCCCGCCG 61.060 66.667 0.00 0.00 33.97 6.46
40 41 3.744719 GGTTTTTCCTCCCGCCGC 61.745 66.667 0.00 0.00 0.00 6.53
41 42 3.744719 GTTTTTCCTCCCGCCGCC 61.745 66.667 0.00 0.00 0.00 6.13
66 67 2.485795 GCCGATCTGCCTCGTCTCT 61.486 63.158 0.00 0.00 36.93 3.10
67 68 2.010582 GCCGATCTGCCTCGTCTCTT 62.011 60.000 0.00 0.00 36.93 2.85
71 72 0.108424 ATCTGCCTCGTCTCTTGTGC 60.108 55.000 0.00 0.00 0.00 4.57
76 78 1.134670 GCCTCGTCTCTTGTGCCTTAT 60.135 52.381 0.00 0.00 0.00 1.73
77 79 2.678190 GCCTCGTCTCTTGTGCCTTATT 60.678 50.000 0.00 0.00 0.00 1.40
88 90 1.006813 TGCCTTATTGTCATGGGGGT 58.993 50.000 0.00 0.00 0.00 4.95
90 92 1.341976 GCCTTATTGTCATGGGGGTGT 60.342 52.381 0.00 0.00 0.00 4.16
92 94 2.378038 CTTATTGTCATGGGGGTGTGG 58.622 52.381 0.00 0.00 0.00 4.17
95 97 1.356494 TTGTCATGGGGGTGTGGTGA 61.356 55.000 0.00 0.00 0.00 4.02
99 101 0.684153 CATGGGGGTGTGGTGAATCC 60.684 60.000 0.00 0.00 0.00 3.01
101 103 2.045340 GGGGTGTGGTGAATCCCG 60.045 66.667 0.00 0.00 40.72 5.14
102 104 2.045340 GGGTGTGGTGAATCCCGG 60.045 66.667 0.00 0.00 34.77 5.73
103 105 2.045340 GGTGTGGTGAATCCCGGG 60.045 66.667 16.85 16.85 34.77 5.73
131 133 3.430453 CAGTGGGAAGGCTCCATTTTTA 58.570 45.455 0.00 0.00 44.51 1.52
132 134 4.026052 CAGTGGGAAGGCTCCATTTTTAT 58.974 43.478 0.00 0.00 44.51 1.40
139 141 7.841729 TGGGAAGGCTCCATTTTTATATGTTTA 59.158 33.333 0.00 0.00 44.51 2.01
161 163 5.869649 ATTTGAGTTTTGCTAGGGTTTGT 57.130 34.783 0.00 0.00 0.00 2.83
162 164 6.969993 ATTTGAGTTTTGCTAGGGTTTGTA 57.030 33.333 0.00 0.00 0.00 2.41
164 166 5.957842 TGAGTTTTGCTAGGGTTTGTATG 57.042 39.130 0.00 0.00 0.00 2.39
165 167 4.217550 TGAGTTTTGCTAGGGTTTGTATGC 59.782 41.667 0.00 0.00 0.00 3.14
168 170 3.433306 TTGCTAGGGTTTGTATGCTGT 57.567 42.857 0.00 0.00 0.00 4.40
170 172 3.343617 TGCTAGGGTTTGTATGCTGTTC 58.656 45.455 0.00 0.00 0.00 3.18
175 177 3.010584 AGGGTTTGTATGCTGTTCAGGAT 59.989 43.478 11.19 11.19 0.00 3.24
188 190 0.390735 TCAGGATGACGAGACGACGA 60.391 55.000 0.00 0.00 42.56 4.20
189 191 0.247735 CAGGATGACGAGACGACGAC 60.248 60.000 0.00 0.00 39.69 4.34
191 193 1.690283 GGATGACGAGACGACGACGA 61.690 60.000 15.32 0.00 42.66 4.20
203 205 1.722119 CGACGACGACTCTGTGAAGAC 60.722 57.143 0.00 0.00 42.66 3.01
212 214 4.142665 CGACTCTGTGAAGACGGAATAAGA 60.143 45.833 0.00 0.00 37.02 2.10
213 215 5.061920 ACTCTGTGAAGACGGAATAAGAC 57.938 43.478 0.00 0.00 37.02 3.01
217 219 5.477291 TCTGTGAAGACGGAATAAGACTCTT 59.523 40.000 0.00 0.00 34.33 2.85
220 222 4.159879 TGAAGACGGAATAAGACTCTTCCC 59.840 45.833 9.91 0.00 38.13 3.97
222 224 2.426381 GACGGAATAAGACTCTTCCCGT 59.574 50.000 22.42 22.42 38.13 5.28
226 228 4.337555 CGGAATAAGACTCTTCCCGTCTAA 59.662 45.833 14.37 0.00 40.65 2.10
229 231 2.903375 AGACTCTTCCCGTCTAACCT 57.097 50.000 0.00 0.00 39.80 3.50
233 236 2.026822 ACTCTTCCCGTCTAACCTCGTA 60.027 50.000 0.00 0.00 0.00 3.43
236 239 0.327924 TCCCGTCTAACCTCGTACCA 59.672 55.000 0.00 0.00 0.00 3.25
241 244 1.135170 GTCTAACCTCGTACCAGTGGC 60.135 57.143 9.78 0.00 0.00 5.01
244 247 4.063967 CCTCGTACCAGTGGCGCA 62.064 66.667 10.83 0.00 0.00 6.09
246 249 1.878522 CTCGTACCAGTGGCGCATC 60.879 63.158 10.83 0.41 0.00 3.91
256 259 1.143838 TGGCGCATCTAGCATCGTT 59.856 52.632 10.83 0.00 46.13 3.85
258 261 0.875908 GGCGCATCTAGCATCGTTGA 60.876 55.000 10.83 0.00 46.13 3.18
259 262 0.930310 GCGCATCTAGCATCGTTGAA 59.070 50.000 0.30 0.00 46.13 2.69
264 267 0.179111 TCTAGCATCGTTGAAGGGCG 60.179 55.000 0.00 0.00 0.00 6.13
271 276 2.317609 CGTTGAAGGGCGTGTGGAG 61.318 63.158 0.00 0.00 0.00 3.86
274 279 2.358737 GAAGGGCGTGTGGAGGTG 60.359 66.667 0.00 0.00 0.00 4.00
287 292 3.091318 GAGGTGTCTCCGACGGATA 57.909 57.895 18.71 7.60 41.99 2.59
288 293 1.606903 GAGGTGTCTCCGACGGATAT 58.393 55.000 18.71 0.00 41.99 1.63
289 294 2.775890 GAGGTGTCTCCGACGGATATA 58.224 52.381 18.71 5.75 41.99 0.86
290 295 2.743126 GAGGTGTCTCCGACGGATATAG 59.257 54.545 18.71 5.72 41.99 1.31
291 296 2.106166 AGGTGTCTCCGACGGATATAGT 59.894 50.000 18.71 0.00 41.99 2.12
292 297 2.483491 GGTGTCTCCGACGGATATAGTC 59.517 54.545 18.71 4.14 34.95 2.59
314 319 4.215399 TCGATTGTTGTCTTTGGTGGATTC 59.785 41.667 0.00 0.00 0.00 2.52
315 320 4.023279 CGATTGTTGTCTTTGGTGGATTCA 60.023 41.667 0.00 0.00 0.00 2.57
318 323 5.867903 TGTTGTCTTTGGTGGATTCATTT 57.132 34.783 0.00 0.00 0.00 2.32
324 329 4.711355 TCTTTGGTGGATTCATTTGGATCC 59.289 41.667 10.51 10.51 0.00 3.36
326 331 2.240921 TGGTGGATTCATTTGGATCCGA 59.759 45.455 12.28 1.27 36.02 4.55
329 334 4.392940 GTGGATTCATTTGGATCCGATCT 58.607 43.478 12.28 0.00 36.02 2.75
331 336 5.997746 GTGGATTCATTTGGATCCGATCTTA 59.002 40.000 12.28 0.00 36.02 2.10
352 360 2.572243 CGTCTACGTCAGTGTGTCTTC 58.428 52.381 0.00 0.00 34.11 2.87
355 363 3.250280 GTCTACGTCAGTGTGTCTTCAGA 59.750 47.826 0.00 0.00 0.00 3.27
364 372 5.012458 TCAGTGTGTCTTCAGATTGAATCCT 59.988 40.000 0.75 0.00 35.59 3.24
366 374 6.206243 CAGTGTGTCTTCAGATTGAATCCTTT 59.794 38.462 0.75 0.00 35.59 3.11
367 375 6.774656 AGTGTGTCTTCAGATTGAATCCTTTT 59.225 34.615 0.75 0.00 35.59 2.27
372 380 7.148356 TGTCTTCAGATTGAATCCTTTTCGATG 60.148 37.037 0.75 0.00 35.59 3.84
375 383 8.737168 TTCAGATTGAATCCTTTTCGATGTAT 57.263 30.769 0.75 0.00 30.26 2.29
378 386 5.499139 TTGAATCCTTTTCGATGTATGCC 57.501 39.130 0.00 0.00 0.00 4.40
379 387 4.780815 TGAATCCTTTTCGATGTATGCCT 58.219 39.130 0.00 0.00 0.00 4.75
380 388 5.924356 TGAATCCTTTTCGATGTATGCCTA 58.076 37.500 0.00 0.00 0.00 3.93
395 403 1.004277 GCCTATCTTCATCGACGGCG 61.004 60.000 2.87 2.87 39.35 6.46
401 409 3.583276 TTCATCGACGGCGGTTGCT 62.583 57.895 12.58 0.00 42.25 3.91
415 423 4.994471 TGCTGTCCTGGTGCGCTG 62.994 66.667 9.73 0.00 0.00 5.18
422 430 2.510238 CTGGTGCGCTGCTCCTAC 60.510 66.667 9.73 0.00 42.02 3.18
423 431 3.300934 CTGGTGCGCTGCTCCTACA 62.301 63.158 9.73 0.00 42.02 2.74
435 443 1.428869 CTCCTACAGGGCCTTAGCAT 58.571 55.000 1.32 0.00 42.56 3.79
436 444 2.609747 CTCCTACAGGGCCTTAGCATA 58.390 52.381 1.32 0.00 42.56 3.14
437 445 2.564947 CTCCTACAGGGCCTTAGCATAG 59.435 54.545 1.32 0.86 42.56 2.23
438 446 1.625818 CCTACAGGGCCTTAGCATAGG 59.374 57.143 1.32 6.75 42.56 2.57
439 447 1.625818 CTACAGGGCCTTAGCATAGGG 59.374 57.143 1.32 0.00 41.50 3.53
477 485 4.648651 ACTATAACAAGTTTTGTCCGGCT 58.351 39.130 0.00 0.00 44.59 5.52
479 487 1.029681 AACAAGTTTTGTCCGGCTCC 58.970 50.000 0.00 0.00 44.59 4.70
480 488 1.164041 ACAAGTTTTGTCCGGCTCCG 61.164 55.000 0.00 0.48 40.56 4.63
481 489 0.882927 CAAGTTTTGTCCGGCTCCGA 60.883 55.000 10.28 0.00 42.83 4.55
482 490 0.036306 AAGTTTTGTCCGGCTCCGAT 59.964 50.000 10.28 0.00 42.83 4.18
501 509 1.686110 GAGGGAGGGGTGATGACGT 60.686 63.158 0.00 0.00 0.00 4.34
502 510 1.677637 GAGGGAGGGGTGATGACGTC 61.678 65.000 9.11 9.11 0.00 4.34
506 514 3.771160 GGGGTGATGACGTCGGCT 61.771 66.667 11.62 0.00 0.00 5.52
513 523 1.989966 GATGACGTCGGCTCCTTCGA 61.990 60.000 11.62 0.00 0.00 3.71
522 532 1.372997 GCTCCTTCGACACGCTTCA 60.373 57.895 0.00 0.00 0.00 3.02
525 535 1.199327 CTCCTTCGACACGCTTCAGTA 59.801 52.381 0.00 0.00 0.00 2.74
527 537 1.068472 CCTTCGACACGCTTCAGTACT 60.068 52.381 0.00 0.00 0.00 2.73
528 538 2.607282 CCTTCGACACGCTTCAGTACTT 60.607 50.000 0.00 0.00 0.00 2.24
530 540 1.605232 TCGACACGCTTCAGTACTTGA 59.395 47.619 0.00 0.00 0.00 3.02
543 553 6.872628 TCAGTACTTGAAGTCGTTTCTAGA 57.127 37.500 0.00 0.00 39.92 2.43
546 556 7.174426 TCAGTACTTGAAGTCGTTTCTAGATGA 59.826 37.037 0.00 13.45 39.92 2.92
552 562 7.625828 TGAAGTCGTTTCTAGATGATCTACA 57.374 36.000 0.00 0.00 36.71 2.74
553 563 7.698628 TGAAGTCGTTTCTAGATGATCTACAG 58.301 38.462 0.00 0.00 36.71 2.74
554 564 6.627395 AGTCGTTTCTAGATGATCTACAGG 57.373 41.667 0.00 0.00 0.00 4.00
556 566 6.261381 AGTCGTTTCTAGATGATCTACAGGTC 59.739 42.308 0.00 0.00 0.00 3.85
560 570 5.654901 TCTAGATGATCTACAGGTCTGGT 57.345 43.478 0.00 0.00 34.19 4.00
562 572 6.436027 TCTAGATGATCTACAGGTCTGGTTT 58.564 40.000 0.00 0.00 34.19 3.27
565 575 7.682787 AGATGATCTACAGGTCTGGTTTTAT 57.317 36.000 0.00 0.00 34.19 1.40
567 577 8.552296 AGATGATCTACAGGTCTGGTTTTATTT 58.448 33.333 0.00 0.00 34.19 1.40
569 579 8.335532 TGATCTACAGGTCTGGTTTTATTTTG 57.664 34.615 2.87 0.00 34.19 2.44
597 607 8.864069 TTATTTTTGATGTTGATGTTCGTTGT 57.136 26.923 0.00 0.00 0.00 3.32
598 608 6.566310 TTTTTGATGTTGATGTTCGTTGTG 57.434 33.333 0.00 0.00 0.00 3.33
599 609 5.491635 TTTGATGTTGATGTTCGTTGTGA 57.508 34.783 0.00 0.00 0.00 3.58
600 610 5.687770 TTGATGTTGATGTTCGTTGTGAT 57.312 34.783 0.00 0.00 0.00 3.06
601 611 5.281693 TGATGTTGATGTTCGTTGTGATC 57.718 39.130 0.00 0.00 0.00 2.92
602 612 3.786657 TGTTGATGTTCGTTGTGATCG 57.213 42.857 0.00 0.00 0.00 3.69
603 613 3.127589 TGTTGATGTTCGTTGTGATCGT 58.872 40.909 0.00 0.00 0.00 3.73
604 614 3.059935 TGTTGATGTTCGTTGTGATCGTG 60.060 43.478 0.00 0.00 0.00 4.35
605 615 3.019933 TGATGTTCGTTGTGATCGTGA 57.980 42.857 0.00 0.00 0.00 4.35
606 616 3.385577 TGATGTTCGTTGTGATCGTGAA 58.614 40.909 0.00 0.00 0.00 3.18
607 617 3.993736 TGATGTTCGTTGTGATCGTGAAT 59.006 39.130 0.00 0.00 0.00 2.57
608 618 5.164954 TGATGTTCGTTGTGATCGTGAATA 58.835 37.500 0.00 0.00 0.00 1.75
609 619 4.896562 TGTTCGTTGTGATCGTGAATAC 57.103 40.909 0.00 0.00 0.00 1.89
610 620 4.552355 TGTTCGTTGTGATCGTGAATACT 58.448 39.130 0.00 0.00 0.00 2.12
611 621 4.619760 TGTTCGTTGTGATCGTGAATACTC 59.380 41.667 0.00 0.00 0.00 2.59
612 622 4.696899 TCGTTGTGATCGTGAATACTCT 57.303 40.909 0.00 0.00 0.00 3.24
613 623 4.659088 TCGTTGTGATCGTGAATACTCTC 58.341 43.478 0.00 0.00 0.00 3.20
614 624 4.395231 TCGTTGTGATCGTGAATACTCTCT 59.605 41.667 0.00 0.00 0.00 3.10
615 625 4.731000 CGTTGTGATCGTGAATACTCTCTC 59.269 45.833 0.00 0.00 0.00 3.20
616 626 4.902443 TGTGATCGTGAATACTCTCTCC 57.098 45.455 0.00 0.00 0.00 3.71
617 627 4.270008 TGTGATCGTGAATACTCTCTCCA 58.730 43.478 0.00 0.00 0.00 3.86
618 628 4.889995 TGTGATCGTGAATACTCTCTCCAT 59.110 41.667 0.00 0.00 0.00 3.41
619 629 5.360999 TGTGATCGTGAATACTCTCTCCATT 59.639 40.000 0.00 0.00 0.00 3.16
620 630 5.918011 GTGATCGTGAATACTCTCTCCATTC 59.082 44.000 0.00 0.00 0.00 2.67
621 631 4.920640 TCGTGAATACTCTCTCCATTCC 57.079 45.455 0.00 0.00 0.00 3.01
622 632 4.537751 TCGTGAATACTCTCTCCATTCCT 58.462 43.478 0.00 0.00 0.00 3.36
623 633 5.691896 TCGTGAATACTCTCTCCATTCCTA 58.308 41.667 0.00 0.00 0.00 2.94
624 634 6.127101 TCGTGAATACTCTCTCCATTCCTAA 58.873 40.000 0.00 0.00 0.00 2.69
625 635 6.605995 TCGTGAATACTCTCTCCATTCCTAAA 59.394 38.462 0.00 0.00 0.00 1.85
626 636 7.287927 TCGTGAATACTCTCTCCATTCCTAAAT 59.712 37.037 0.00 0.00 0.00 1.40
627 637 8.577296 CGTGAATACTCTCTCCATTCCTAAATA 58.423 37.037 0.00 0.00 0.00 1.40
662 672 9.990360 TTCATATATTTCAAATAGACTACCGCA 57.010 29.630 0.00 0.00 0.00 5.69
666 676 6.764877 ATTTCAAATAGACTACCGCATACG 57.235 37.500 0.00 0.00 39.67 3.06
667 677 5.503662 TTCAAATAGACTACCGCATACGA 57.496 39.130 0.00 0.00 43.93 3.43
668 678 5.503662 TCAAATAGACTACCGCATACGAA 57.496 39.130 0.00 0.00 43.93 3.85
669 679 6.080648 TCAAATAGACTACCGCATACGAAT 57.919 37.500 0.00 0.00 43.93 3.34
670 680 7.205737 TCAAATAGACTACCGCATACGAATA 57.794 36.000 0.00 0.00 43.93 1.75
671 681 7.823665 TCAAATAGACTACCGCATACGAATAT 58.176 34.615 0.00 0.00 43.93 1.28
672 682 8.949177 TCAAATAGACTACCGCATACGAATATA 58.051 33.333 0.00 0.00 43.93 0.86
673 683 9.731819 CAAATAGACTACCGCATACGAATATAT 57.268 33.333 0.00 0.00 43.93 0.86
678 688 9.993454 AGACTACCGCATACGAATATATATAGA 57.007 33.333 0.00 0.00 43.93 1.98
680 690 9.551734 ACTACCGCATACGAATATATATAGACA 57.448 33.333 0.00 0.00 43.93 3.41
713 723 7.865706 AGTGTAAGTTCACTCATTTTGTTCT 57.134 32.000 3.11 0.00 44.07 3.01
714 724 7.697691 AGTGTAAGTTCACTCATTTTGTTCTG 58.302 34.615 3.11 0.00 44.07 3.02
715 725 7.336931 AGTGTAAGTTCACTCATTTTGTTCTGT 59.663 33.333 3.11 0.00 44.07 3.41
716 726 8.609176 GTGTAAGTTCACTCATTTTGTTCTGTA 58.391 33.333 0.00 0.00 35.68 2.74
717 727 9.337396 TGTAAGTTCACTCATTTTGTTCTGTAT 57.663 29.630 0.00 0.00 0.00 2.29
718 728 9.599322 GTAAGTTCACTCATTTTGTTCTGTATG 57.401 33.333 0.00 0.00 0.00 2.39
719 729 7.807977 AGTTCACTCATTTTGTTCTGTATGT 57.192 32.000 0.00 0.00 0.00 2.29
720 730 8.902540 AGTTCACTCATTTTGTTCTGTATGTA 57.097 30.769 0.00 0.00 0.00 2.29
721 731 8.993121 AGTTCACTCATTTTGTTCTGTATGTAG 58.007 33.333 0.00 0.00 0.00 2.74
722 732 8.774586 GTTCACTCATTTTGTTCTGTATGTAGT 58.225 33.333 0.00 0.00 0.00 2.73
723 733 8.534333 TCACTCATTTTGTTCTGTATGTAGTC 57.466 34.615 0.00 0.00 0.00 2.59
724 734 8.147704 TCACTCATTTTGTTCTGTATGTAGTCA 58.852 33.333 0.00 0.00 0.00 3.41
725 735 8.939929 CACTCATTTTGTTCTGTATGTAGTCAT 58.060 33.333 0.00 0.00 38.00 3.06
726 736 9.507329 ACTCATTTTGTTCTGTATGTAGTCATT 57.493 29.630 0.00 0.00 35.70 2.57
729 739 9.897744 CATTTTGTTCTGTATGTAGTCATTTGT 57.102 29.630 0.00 0.00 35.70 2.83
747 757 9.561270 GTCATTTGTTAAAATCTCTAGAAAGCC 57.439 33.333 0.00 0.00 33.59 4.35
748 758 9.295825 TCATTTGTTAAAATCTCTAGAAAGCCA 57.704 29.630 0.00 0.00 33.59 4.75
749 759 9.912634 CATTTGTTAAAATCTCTAGAAAGCCAA 57.087 29.630 0.00 0.00 33.59 4.52
751 761 8.691661 TTGTTAAAATCTCTAGAAAGCCAAGT 57.308 30.769 0.00 0.00 0.00 3.16
752 762 9.787435 TTGTTAAAATCTCTAGAAAGCCAAGTA 57.213 29.630 0.00 0.00 0.00 2.24
753 763 9.959721 TGTTAAAATCTCTAGAAAGCCAAGTAT 57.040 29.630 0.00 0.00 0.00 2.12
758 768 9.620259 AAATCTCTAGAAAGCCAAGTATTTAGG 57.380 33.333 0.00 0.00 0.00 2.69
759 769 7.973048 TCTCTAGAAAGCCAAGTATTTAGGA 57.027 36.000 0.00 0.00 0.00 2.94
760 770 8.375493 TCTCTAGAAAGCCAAGTATTTAGGAA 57.625 34.615 0.00 0.00 0.00 3.36
761 771 8.258708 TCTCTAGAAAGCCAAGTATTTAGGAAC 58.741 37.037 0.00 0.00 0.00 3.62
762 772 7.039882 TCTAGAAAGCCAAGTATTTAGGAACG 58.960 38.462 0.00 0.00 0.00 3.95
763 773 4.941873 AGAAAGCCAAGTATTTAGGAACGG 59.058 41.667 0.00 0.00 0.00 4.44
764 774 4.563140 AAGCCAAGTATTTAGGAACGGA 57.437 40.909 0.00 0.00 0.00 4.69
765 775 4.138487 AGCCAAGTATTTAGGAACGGAG 57.862 45.455 0.00 0.00 0.00 4.63
766 776 3.773119 AGCCAAGTATTTAGGAACGGAGA 59.227 43.478 0.00 0.00 0.00 3.71
767 777 4.120589 GCCAAGTATTTAGGAACGGAGAG 58.879 47.826 0.00 0.00 0.00 3.20
768 778 4.142004 GCCAAGTATTTAGGAACGGAGAGA 60.142 45.833 0.00 0.00 0.00 3.10
769 779 5.626116 GCCAAGTATTTAGGAACGGAGAGAA 60.626 44.000 0.00 0.00 0.00 2.87
770 780 6.583562 CCAAGTATTTAGGAACGGAGAGAAT 58.416 40.000 0.00 0.00 0.00 2.40
771 781 7.686127 GCCAAGTATTTAGGAACGGAGAGAATA 60.686 40.741 0.00 0.00 0.00 1.75
772 782 7.868415 CCAAGTATTTAGGAACGGAGAGAATAG 59.132 40.741 0.00 0.00 0.00 1.73
773 783 8.630917 CAAGTATTTAGGAACGGAGAGAATAGA 58.369 37.037 0.00 0.00 0.00 1.98
774 784 8.943594 AGTATTTAGGAACGGAGAGAATAGAT 57.056 34.615 0.00 0.00 0.00 1.98
775 785 9.016438 AGTATTTAGGAACGGAGAGAATAGATC 57.984 37.037 0.00 0.00 0.00 2.75
776 786 7.841282 ATTTAGGAACGGAGAGAATAGATCA 57.159 36.000 0.00 0.00 0.00 2.92
777 787 6.885952 TTAGGAACGGAGAGAATAGATCAG 57.114 41.667 0.00 0.00 0.00 2.90
778 788 5.055265 AGGAACGGAGAGAATAGATCAGA 57.945 43.478 0.00 0.00 0.00 3.27
779 789 5.450453 AGGAACGGAGAGAATAGATCAGAA 58.550 41.667 0.00 0.00 0.00 3.02
780 790 5.894393 AGGAACGGAGAGAATAGATCAGAAA 59.106 40.000 0.00 0.00 0.00 2.52
781 791 6.381420 AGGAACGGAGAGAATAGATCAGAAAA 59.619 38.462 0.00 0.00 0.00 2.29
782 792 7.070571 AGGAACGGAGAGAATAGATCAGAAAAT 59.929 37.037 0.00 0.00 0.00 1.82
783 793 7.713073 GGAACGGAGAGAATAGATCAGAAAATT 59.287 37.037 0.00 0.00 0.00 1.82
784 794 9.103861 GAACGGAGAGAATAGATCAGAAAATTT 57.896 33.333 0.00 0.00 0.00 1.82
785 795 8.655651 ACGGAGAGAATAGATCAGAAAATTTC 57.344 34.615 0.00 0.00 0.00 2.17
786 796 8.482128 ACGGAGAGAATAGATCAGAAAATTTCT 58.518 33.333 1.80 1.80 41.70 2.52
787 797 9.973450 CGGAGAGAATAGATCAGAAAATTTCTA 57.027 33.333 8.03 0.00 38.11 2.10
813 823 1.188863 AAAACAGCTCCCATGCATCC 58.811 50.000 0.00 0.00 34.99 3.51
814 824 1.033746 AAACAGCTCCCATGCATCCG 61.034 55.000 0.00 0.00 34.99 4.18
815 825 2.593725 CAGCTCCCATGCATCCGG 60.594 66.667 0.00 0.00 34.99 5.14
816 826 3.092511 AGCTCCCATGCATCCGGT 61.093 61.111 0.00 0.00 34.99 5.28
817 827 2.903855 GCTCCCATGCATCCGGTG 60.904 66.667 0.00 1.45 0.00 4.94
826 836 4.079446 CATCCGGTGCACCAGTTT 57.921 55.556 34.16 13.78 35.14 2.66
827 837 1.580942 CATCCGGTGCACCAGTTTG 59.419 57.895 34.16 20.94 35.14 2.93
828 838 0.888736 CATCCGGTGCACCAGTTTGA 60.889 55.000 34.16 21.07 35.14 2.69
829 839 0.038166 ATCCGGTGCACCAGTTTGAT 59.962 50.000 34.16 22.20 35.14 2.57
830 840 0.888736 TCCGGTGCACCAGTTTGATG 60.889 55.000 34.16 15.69 35.14 3.07
831 841 1.580942 CGGTGCACCAGTTTGATGG 59.419 57.895 34.16 11.80 46.47 3.51
840 850 2.998772 CCAGTTTGATGGTTTCACACG 58.001 47.619 0.00 0.00 39.53 4.49
841 851 2.616376 CCAGTTTGATGGTTTCACACGA 59.384 45.455 0.00 0.00 39.53 4.35
842 852 3.253188 CCAGTTTGATGGTTTCACACGAT 59.747 43.478 0.00 0.00 39.53 3.73
843 853 4.454161 CCAGTTTGATGGTTTCACACGATA 59.546 41.667 0.00 0.00 39.53 2.92
844 854 5.382303 CAGTTTGATGGTTTCACACGATAC 58.618 41.667 0.00 0.00 39.53 2.24
848 858 4.059511 TGATGGTTTCACACGATACGTTT 58.940 39.130 0.00 0.00 38.32 3.60
862 872 4.084888 GTTTTCGGGCACGCCGAG 62.085 66.667 1.67 0.00 40.77 4.63
921 1988 5.547181 GGAAGGAGACCGATAAACAAAAG 57.453 43.478 0.00 0.00 0.00 2.27
972 2040 1.153046 CCCACGCCCATAAATCCGT 60.153 57.895 0.00 0.00 0.00 4.69
989 2060 1.403679 CCGTGCAAAGAGGTTTTGTCA 59.596 47.619 0.00 0.00 0.00 3.58
1011 2082 2.669569 CAACCGAGCCCCACACAG 60.670 66.667 0.00 0.00 0.00 3.66
1016 2087 4.729918 GAGCCCCACACAGCCCAG 62.730 72.222 0.00 0.00 0.00 4.45
1096 2167 3.285215 GCGCCGGATCTCCTCGTA 61.285 66.667 5.05 0.00 33.99 3.43
1471 2542 1.006805 GGAGACGGATGATCTGGCG 60.007 63.158 6.19 0.00 35.41 5.69
1529 2600 2.203640 AGGTCGTCCTGGTCTGCA 60.204 61.111 0.00 0.00 43.33 4.41
1541 2612 2.997315 TCTGCACCCTCGACCCTG 60.997 66.667 0.00 0.00 0.00 4.45
1790 2861 4.003648 GTCCAAGTGGATGTACCTCTTTG 58.996 47.826 2.75 0.00 46.31 2.77
1821 2892 2.394930 GACTTCTCCAAGGCCTTCTC 57.605 55.000 17.29 0.00 30.14 2.87
1823 2894 1.284313 CTTCTCCAAGGCCTTCTCCT 58.716 55.000 17.29 0.00 38.31 3.69
2024 3098 1.737793 GTGTATCGGCTTTCAACCTGG 59.262 52.381 0.00 0.00 0.00 4.45
2025 3099 0.733150 GTATCGGCTTTCAACCTGGC 59.267 55.000 0.00 0.00 0.00 4.85
2048 3122 0.458716 CCGGACCTCGAAGAAGCTTC 60.459 60.000 19.11 19.11 42.43 3.86
2283 3357 5.183140 ACAAGCCTCTTTTATACGCATGTTT 59.817 36.000 0.00 0.00 27.80 2.83
2401 3476 6.630071 AGCTTCTAGACTCTCAAGTTTCATC 58.370 40.000 0.00 0.00 35.28 2.92
2402 3477 6.437162 AGCTTCTAGACTCTCAAGTTTCATCT 59.563 38.462 0.00 0.00 35.28 2.90
2407 3482 6.371595 AGACTCTCAAGTTTCATCTTCCAT 57.628 37.500 0.00 0.00 35.28 3.41
2410 3485 7.723172 AGACTCTCAAGTTTCATCTTCCATTTT 59.277 33.333 0.00 0.00 35.28 1.82
2511 3587 2.755655 AGTAATGGACTCGGAGTCTGTG 59.244 50.000 30.92 0.00 44.46 3.66
2523 3600 3.370978 CGGAGTCTGTGTTTTTATGCGAT 59.629 43.478 0.00 0.00 0.00 4.58
2527 3604 6.741358 GGAGTCTGTGTTTTTATGCGATTAAC 59.259 38.462 0.00 0.00 0.00 2.01
2531 3608 7.478667 GTCTGTGTTTTTATGCGATTAACTGAG 59.521 37.037 0.00 0.00 0.00 3.35
2668 3747 3.131396 GGATAACTGAGTACCAATGCCG 58.869 50.000 0.00 0.00 0.00 5.69
2871 3952 3.610040 ATGAACCTTGCGACTGATGTA 57.390 42.857 0.00 0.00 0.00 2.29
2881 3962 4.060205 TGCGACTGATGTAATGATCATGG 58.940 43.478 9.46 0.00 31.88 3.66
2890 3971 8.291191 TGATGTAATGATCATGGTTTTGCTAA 57.709 30.769 9.46 0.00 0.00 3.09
2891 3972 8.747471 TGATGTAATGATCATGGTTTTGCTAAA 58.253 29.630 9.46 0.00 0.00 1.85
2892 3973 9.585099 GATGTAATGATCATGGTTTTGCTAAAA 57.415 29.630 9.46 0.00 0.00 1.52
2894 3975 9.941325 TGTAATGATCATGGTTTTGCTAAAATT 57.059 25.926 9.46 0.00 32.22 1.82
2937 4018 3.185455 AGGGAGTAGAATGGAAAGCACT 58.815 45.455 0.00 0.00 0.00 4.40
2938 4019 3.589288 AGGGAGTAGAATGGAAAGCACTT 59.411 43.478 0.00 0.00 0.00 3.16
2952 4036 0.030235 GCACTTGGAACCGGTTTGTC 59.970 55.000 23.22 14.52 0.00 3.18
2959 4043 2.224670 TGGAACCGGTTTGTCTAAGCAT 60.225 45.455 23.22 0.00 33.83 3.79
2960 4044 2.161609 GGAACCGGTTTGTCTAAGCATG 59.838 50.000 23.22 0.00 33.83 4.06
2961 4045 2.851263 ACCGGTTTGTCTAAGCATGA 57.149 45.000 0.00 0.00 33.83 3.07
2962 4046 2.423577 ACCGGTTTGTCTAAGCATGAC 58.576 47.619 0.00 0.00 33.83 3.06
2963 4047 1.393539 CCGGTTTGTCTAAGCATGACG 59.606 52.381 0.00 0.00 33.83 4.35
2964 4048 2.066262 CGGTTTGTCTAAGCATGACGT 58.934 47.619 0.00 0.00 33.83 4.34
2965 4049 2.478894 CGGTTTGTCTAAGCATGACGTT 59.521 45.455 0.00 0.00 33.83 3.99
2966 4050 3.664276 CGGTTTGTCTAAGCATGACGTTG 60.664 47.826 0.00 0.00 33.83 4.10
2967 4051 3.250040 GGTTTGTCTAAGCATGACGTTGT 59.750 43.478 0.00 0.00 34.37 3.32
2968 4052 4.449743 GGTTTGTCTAAGCATGACGTTGTA 59.550 41.667 0.00 0.00 34.37 2.41
2969 4053 5.371629 GTTTGTCTAAGCATGACGTTGTAC 58.628 41.667 0.00 0.00 0.00 2.90
2970 4054 8.708205 GGTTTGTCTAAGCATGACGTTGTACG 62.708 46.154 0.00 0.00 39.66 3.67
2988 4072 1.796459 ACGTTGTGGTTATCGAGCAAC 59.204 47.619 4.50 4.50 37.53 4.17
2995 4079 1.940613 GGTTATCGAGCAACATGGGTC 59.059 52.381 13.02 0.00 0.00 4.46
3000 4084 3.627395 TCGAGCAACATGGGTCTAATT 57.373 42.857 0.00 0.00 33.24 1.40
3001 4085 3.531538 TCGAGCAACATGGGTCTAATTC 58.468 45.455 0.00 0.00 33.24 2.17
3008 4092 8.000780 AGCAACATGGGTCTAATTCTATTTTC 57.999 34.615 0.00 0.00 0.00 2.29
3019 4103 8.451748 GTCTAATTCTATTTTCGCAGTTCCTTT 58.548 33.333 0.00 0.00 0.00 3.11
3037 4121 8.437575 AGTTCCTTTTAAAACATACTCTCTCCA 58.562 33.333 0.00 0.00 0.00 3.86
3045 4129 7.921041 AAAACATACTCTCTCCATCCTATGA 57.079 36.000 0.00 0.00 0.00 2.15
3108 6114 5.932619 TGTACTCATACATTGGTGCTAGT 57.067 39.130 0.00 0.00 36.34 2.57
3110 6116 7.412853 TGTACTCATACATTGGTGCTAGTAA 57.587 36.000 0.00 0.00 36.34 2.24
3111 6117 7.262772 TGTACTCATACATTGGTGCTAGTAAC 58.737 38.462 0.00 0.00 36.34 2.50
3112 6118 6.294361 ACTCATACATTGGTGCTAGTAACA 57.706 37.500 0.00 0.00 0.00 2.41
3113 6119 6.106673 ACTCATACATTGGTGCTAGTAACAC 58.893 40.000 0.00 0.00 37.31 3.32
3114 6120 6.070767 ACTCATACATTGGTGCTAGTAACACT 60.071 38.462 0.00 0.00 38.14 3.55
3115 6121 7.123697 ACTCATACATTGGTGCTAGTAACACTA 59.876 37.037 0.00 0.00 38.14 2.74
3116 6122 7.842982 TCATACATTGGTGCTAGTAACACTAA 58.157 34.615 0.00 5.13 41.79 2.24
3117 6123 8.315482 TCATACATTGGTGCTAGTAACACTAAA 58.685 33.333 0.00 1.85 41.07 1.85
3118 6124 9.109393 CATACATTGGTGCTAGTAACACTAAAT 57.891 33.333 0.00 3.80 41.07 1.40
3121 6127 9.109393 ACATTGGTGCTAGTAACACTAAATATG 57.891 33.333 0.00 1.27 41.07 1.78
3122 6128 7.548196 TTGGTGCTAGTAACACTAAATATGC 57.452 36.000 0.00 0.00 35.84 3.14
3123 6129 6.053005 TGGTGCTAGTAACACTAAATATGCC 58.947 40.000 0.00 0.00 38.14 4.40
3124 6130 6.053005 GGTGCTAGTAACACTAAATATGCCA 58.947 40.000 3.81 0.00 38.14 4.92
3125 6131 6.018180 GGTGCTAGTAACACTAAATATGCCAC 60.018 42.308 3.81 0.00 38.14 5.01
3126 6132 6.761714 GTGCTAGTAACACTAAATATGCCACT 59.238 38.462 0.00 0.00 35.12 4.00
3127 6133 6.761242 TGCTAGTAACACTAAATATGCCACTG 59.239 38.462 0.00 0.00 29.00 3.66
3128 6134 6.292919 GCTAGTAACACTAAATATGCCACTGC 60.293 42.308 0.00 0.00 31.63 4.40
3129 6135 4.570772 AGTAACACTAAATATGCCACTGCG 59.429 41.667 0.00 0.00 41.78 5.18
3130 6136 2.985896 ACACTAAATATGCCACTGCGT 58.014 42.857 0.00 0.00 41.78 5.24
3131 6137 3.343617 ACACTAAATATGCCACTGCGTT 58.656 40.909 0.00 0.00 41.78 4.84
3132 6138 4.509616 ACACTAAATATGCCACTGCGTTA 58.490 39.130 0.00 0.00 41.78 3.18
3133 6139 4.331717 ACACTAAATATGCCACTGCGTTAC 59.668 41.667 0.00 0.00 41.78 2.50
3134 6140 4.331443 CACTAAATATGCCACTGCGTTACA 59.669 41.667 0.00 0.00 41.78 2.41
3135 6141 4.938832 ACTAAATATGCCACTGCGTTACAA 59.061 37.500 0.00 0.00 41.78 2.41
3136 6142 3.757745 AATATGCCACTGCGTTACAAC 57.242 42.857 0.00 0.00 41.78 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.958091 AGCCGCATGCACTACAAAAA 59.042 45.000 19.57 0.00 44.83 1.94
2 3 1.737236 CTAGCCGCATGCACTACAAAA 59.263 47.619 19.57 0.00 44.83 2.44
3 4 1.368641 CTAGCCGCATGCACTACAAA 58.631 50.000 19.57 0.00 44.83 2.83
4 5 0.461870 CCTAGCCGCATGCACTACAA 60.462 55.000 19.57 0.00 44.83 2.41
5 6 1.143838 CCTAGCCGCATGCACTACA 59.856 57.895 19.57 0.00 44.83 2.74
6 7 1.595382 CCCTAGCCGCATGCACTAC 60.595 63.158 19.57 3.20 44.83 2.73
7 8 1.622607 AACCCTAGCCGCATGCACTA 61.623 55.000 19.57 16.73 44.83 2.74
8 9 2.484287 AAACCCTAGCCGCATGCACT 62.484 55.000 19.57 16.48 44.83 4.40
9 10 1.595093 AAAACCCTAGCCGCATGCAC 61.595 55.000 19.57 9.19 44.83 4.57
10 11 0.897863 AAAAACCCTAGCCGCATGCA 60.898 50.000 19.57 0.00 44.83 3.96
11 12 0.179137 GAAAAACCCTAGCCGCATGC 60.179 55.000 7.91 7.91 41.71 4.06
12 13 0.455815 GGAAAAACCCTAGCCGCATG 59.544 55.000 0.00 0.00 0.00 4.06
13 14 0.331616 AGGAAAAACCCTAGCCGCAT 59.668 50.000 0.00 0.00 40.05 4.73
14 15 0.322187 GAGGAAAAACCCTAGCCGCA 60.322 55.000 0.00 0.00 40.05 5.69
15 16 1.030488 GGAGGAAAAACCCTAGCCGC 61.030 60.000 0.00 0.00 40.05 6.53
16 17 0.393944 GGGAGGAAAAACCCTAGCCG 60.394 60.000 0.00 0.00 42.56 5.52
17 18 0.393944 CGGGAGGAAAAACCCTAGCC 60.394 60.000 0.00 0.00 43.57 3.93
18 19 1.030488 GCGGGAGGAAAAACCCTAGC 61.030 60.000 0.00 0.00 43.57 3.42
19 20 0.393944 GGCGGGAGGAAAAACCCTAG 60.394 60.000 0.00 0.00 43.57 3.02
20 21 1.687014 GGCGGGAGGAAAAACCCTA 59.313 57.895 0.00 0.00 43.57 3.53
21 22 2.439245 GGCGGGAGGAAAAACCCT 59.561 61.111 0.00 0.00 43.57 4.34
22 23 3.060000 CGGCGGGAGGAAAAACCC 61.060 66.667 0.00 0.00 42.43 4.11
23 24 3.744719 GCGGCGGGAGGAAAAACC 61.745 66.667 9.78 0.00 39.35 3.27
24 25 3.744719 GGCGGCGGGAGGAAAAAC 61.745 66.667 9.78 0.00 0.00 2.43
49 50 0.248825 CAAGAGACGAGGCAGATCGG 60.249 60.000 9.56 0.00 46.91 4.18
51 52 1.919918 CACAAGAGACGAGGCAGATC 58.080 55.000 0.00 0.00 0.00 2.75
52 53 0.108424 GCACAAGAGACGAGGCAGAT 60.108 55.000 0.00 0.00 0.00 2.90
53 54 1.290324 GCACAAGAGACGAGGCAGA 59.710 57.895 0.00 0.00 0.00 4.26
54 55 1.739562 GGCACAAGAGACGAGGCAG 60.740 63.158 0.00 0.00 0.00 4.85
55 56 1.758440 AAGGCACAAGAGACGAGGCA 61.758 55.000 0.00 0.00 0.00 4.75
66 67 2.455557 CCCCATGACAATAAGGCACAA 58.544 47.619 0.00 0.00 38.79 3.33
67 68 1.341877 CCCCCATGACAATAAGGCACA 60.342 52.381 0.00 0.00 38.79 4.57
71 72 2.378038 CACACCCCCATGACAATAAGG 58.622 52.381 0.00 0.00 0.00 2.69
76 78 1.152599 CACCACACCCCCATGACAA 59.847 57.895 0.00 0.00 0.00 3.18
77 79 1.356494 TTCACCACACCCCCATGACA 61.356 55.000 0.00 0.00 0.00 3.58
88 90 4.041762 GGCCCGGGATTCACCACA 62.042 66.667 29.31 0.00 41.20 4.17
90 92 2.938798 AAGGCCCGGGATTCACCA 60.939 61.111 29.31 0.00 41.20 4.17
92 94 3.140814 GCAAGGCCCGGGATTCAC 61.141 66.667 29.31 5.36 0.00 3.18
103 105 2.677875 CCTTCCCACTGGCAAGGC 60.678 66.667 4.72 0.00 34.38 4.35
111 113 2.702270 AAAAATGGAGCCTTCCCACT 57.298 45.000 0.00 0.00 43.33 4.00
131 133 9.255029 ACCCTAGCAAAACTCAAATAAACATAT 57.745 29.630 0.00 0.00 0.00 1.78
132 134 8.644374 ACCCTAGCAAAACTCAAATAAACATA 57.356 30.769 0.00 0.00 0.00 2.29
139 141 5.869649 ACAAACCCTAGCAAAACTCAAAT 57.130 34.783 0.00 0.00 0.00 2.32
142 144 4.217550 GCATACAAACCCTAGCAAAACTCA 59.782 41.667 0.00 0.00 0.00 3.41
151 153 3.941483 CCTGAACAGCATACAAACCCTAG 59.059 47.826 0.00 0.00 0.00 3.02
154 156 2.790433 TCCTGAACAGCATACAAACCC 58.210 47.619 0.00 0.00 0.00 4.11
161 163 3.023832 TCTCGTCATCCTGAACAGCATA 58.976 45.455 0.00 0.00 0.00 3.14
162 164 1.827344 TCTCGTCATCCTGAACAGCAT 59.173 47.619 0.00 0.00 0.00 3.79
164 166 1.634702 GTCTCGTCATCCTGAACAGC 58.365 55.000 0.00 0.00 0.00 4.40
165 167 1.468914 TCGTCTCGTCATCCTGAACAG 59.531 52.381 0.00 0.00 0.00 3.16
168 170 0.446616 CGTCGTCTCGTCATCCTGAA 59.553 55.000 0.00 0.00 0.00 3.02
170 172 0.247735 GTCGTCGTCTCGTCATCCTG 60.248 60.000 0.00 0.00 0.00 3.86
175 177 1.612469 GAGTCGTCGTCGTCTCGTCA 61.612 60.000 12.38 0.00 40.72 4.35
185 187 0.235144 CGTCTTCACAGAGTCGTCGT 59.765 55.000 0.00 0.00 0.00 4.34
186 188 0.452950 CCGTCTTCACAGAGTCGTCG 60.453 60.000 0.00 0.00 0.00 5.12
188 190 1.315690 TTCCGTCTTCACAGAGTCGT 58.684 50.000 0.00 0.00 0.00 4.34
189 191 2.638556 ATTCCGTCTTCACAGAGTCG 57.361 50.000 0.00 0.00 0.00 4.18
191 193 4.767928 AGTCTTATTCCGTCTTCACAGAGT 59.232 41.667 0.00 0.00 0.00 3.24
195 197 5.336531 GGAAGAGTCTTATTCCGTCTTCACA 60.337 44.000 5.09 0.00 43.26 3.58
196 198 5.103687 GGAAGAGTCTTATTCCGTCTTCAC 58.896 45.833 5.09 0.00 43.26 3.18
203 205 2.688958 AGACGGGAAGAGTCTTATTCCG 59.311 50.000 26.61 26.61 45.74 4.30
212 214 1.271817 ACGAGGTTAGACGGGAAGAGT 60.272 52.381 0.00 0.00 0.00 3.24
213 215 1.461559 ACGAGGTTAGACGGGAAGAG 58.538 55.000 0.00 0.00 0.00 2.85
217 219 0.327924 TGGTACGAGGTTAGACGGGA 59.672 55.000 0.00 0.00 0.00 5.14
220 222 1.131883 CCACTGGTACGAGGTTAGACG 59.868 57.143 9.86 0.00 0.00 4.18
222 224 1.180029 GCCACTGGTACGAGGTTAGA 58.820 55.000 9.86 0.00 0.00 2.10
226 228 4.065281 GCGCCACTGGTACGAGGT 62.065 66.667 9.86 0.00 0.00 3.85
229 231 1.033202 TAGATGCGCCACTGGTACGA 61.033 55.000 4.18 0.00 0.00 3.43
233 236 1.976132 ATGCTAGATGCGCCACTGGT 61.976 55.000 4.18 0.00 46.63 4.00
236 239 1.300465 CGATGCTAGATGCGCCACT 60.300 57.895 4.18 6.83 46.63 4.00
241 244 1.524355 CCTTCAACGATGCTAGATGCG 59.476 52.381 0.00 0.00 46.63 4.73
244 247 1.539065 CGCCCTTCAACGATGCTAGAT 60.539 52.381 0.00 0.00 0.00 1.98
246 249 0.460284 ACGCCCTTCAACGATGCTAG 60.460 55.000 0.00 0.00 0.00 3.42
256 259 2.847234 ACCTCCACACGCCCTTCA 60.847 61.111 0.00 0.00 0.00 3.02
258 261 3.168528 ACACCTCCACACGCCCTT 61.169 61.111 0.00 0.00 0.00 3.95
259 262 3.626924 GACACCTCCACACGCCCT 61.627 66.667 0.00 0.00 0.00 5.19
281 286 5.769484 AGACAACAATCGACTATATCCGT 57.231 39.130 0.00 0.00 0.00 4.69
283 288 6.761714 ACCAAAGACAACAATCGACTATATCC 59.238 38.462 0.00 0.00 0.00 2.59
287 292 4.695455 CCACCAAAGACAACAATCGACTAT 59.305 41.667 0.00 0.00 0.00 2.12
288 293 4.062293 CCACCAAAGACAACAATCGACTA 58.938 43.478 0.00 0.00 0.00 2.59
289 294 2.878406 CCACCAAAGACAACAATCGACT 59.122 45.455 0.00 0.00 0.00 4.18
290 295 2.875933 TCCACCAAAGACAACAATCGAC 59.124 45.455 0.00 0.00 0.00 4.20
291 296 3.201353 TCCACCAAAGACAACAATCGA 57.799 42.857 0.00 0.00 0.00 3.59
292 297 4.023279 TGAATCCACCAAAGACAACAATCG 60.023 41.667 0.00 0.00 0.00 3.34
293 298 5.452078 TGAATCCACCAAAGACAACAATC 57.548 39.130 0.00 0.00 0.00 2.67
294 299 6.423776 AATGAATCCACCAAAGACAACAAT 57.576 33.333 0.00 0.00 0.00 2.71
295 300 5.867903 AATGAATCCACCAAAGACAACAA 57.132 34.783 0.00 0.00 0.00 2.83
296 301 5.453057 CCAAATGAATCCACCAAAGACAACA 60.453 40.000 0.00 0.00 0.00 3.33
297 302 4.990426 CCAAATGAATCCACCAAAGACAAC 59.010 41.667 0.00 0.00 0.00 3.32
298 303 4.898265 TCCAAATGAATCCACCAAAGACAA 59.102 37.500 0.00 0.00 0.00 3.18
302 307 4.440525 CGGATCCAAATGAATCCACCAAAG 60.441 45.833 13.41 0.00 32.91 2.77
314 319 4.621991 AGACGTAAGATCGGATCCAAATG 58.378 43.478 13.41 8.10 43.62 2.32
315 320 4.939052 AGACGTAAGATCGGATCCAAAT 57.061 40.909 13.41 4.27 43.62 2.32
318 323 2.804527 CGTAGACGTAAGATCGGATCCA 59.195 50.000 13.41 0.00 43.62 3.41
341 349 5.243981 AGGATTCAATCTGAAGACACACTG 58.756 41.667 0.00 0.00 40.05 3.66
342 350 5.495926 AGGATTCAATCTGAAGACACACT 57.504 39.130 0.00 0.00 40.05 3.55
352 360 6.854892 GCATACATCGAAAAGGATTCAATCTG 59.145 38.462 0.00 0.00 0.00 2.90
355 363 5.829924 AGGCATACATCGAAAAGGATTCAAT 59.170 36.000 0.00 0.00 0.00 2.57
364 372 7.658179 GATGAAGATAGGCATACATCGAAAA 57.342 36.000 0.00 0.00 0.00 2.29
372 380 3.502920 CCGTCGATGAAGATAGGCATAC 58.497 50.000 6.11 0.00 0.00 2.39
375 383 0.032130 GCCGTCGATGAAGATAGGCA 59.968 55.000 6.11 0.00 42.37 4.75
378 386 0.311165 ACCGCCGTCGATGAAGATAG 59.689 55.000 6.11 0.00 38.10 2.08
379 387 0.742505 AACCGCCGTCGATGAAGATA 59.257 50.000 6.11 0.00 38.10 1.98
380 388 0.806102 CAACCGCCGTCGATGAAGAT 60.806 55.000 6.11 0.00 38.10 2.40
390 398 4.988598 CAGGACAGCAACCGCCGT 62.989 66.667 0.00 0.00 39.83 5.68
395 403 3.357079 CGCACCAGGACAGCAACC 61.357 66.667 0.00 0.00 0.00 3.77
401 409 4.687215 GAGCAGCGCACCAGGACA 62.687 66.667 11.47 0.00 0.00 4.02
404 412 3.774528 TAGGAGCAGCGCACCAGG 61.775 66.667 11.47 0.00 41.64 4.45
408 416 2.510238 CCTGTAGGAGCAGCGCAC 60.510 66.667 11.47 0.00 37.39 5.34
415 423 1.338136 TGCTAAGGCCCTGTAGGAGC 61.338 60.000 0.00 0.68 38.24 4.70
416 424 1.428869 ATGCTAAGGCCCTGTAGGAG 58.571 55.000 0.00 0.00 38.24 3.69
420 428 1.222039 TCCCTATGCTAAGGCCCTGTA 59.778 52.381 0.00 0.00 37.74 2.74
422 430 0.398318 GTCCCTATGCTAAGGCCCTG 59.602 60.000 0.00 0.00 37.74 4.45
423 431 0.269173 AGTCCCTATGCTAAGGCCCT 59.731 55.000 0.00 0.00 37.74 5.19
426 434 2.872858 CGAAAAGTCCCTATGCTAAGGC 59.127 50.000 0.00 0.00 35.09 4.35
435 443 4.660168 AGTAGACAGTCGAAAAGTCCCTA 58.340 43.478 8.90 0.00 32.82 3.53
436 444 3.498334 AGTAGACAGTCGAAAAGTCCCT 58.502 45.455 8.90 4.22 32.82 4.20
437 445 3.938289 AGTAGACAGTCGAAAAGTCCC 57.062 47.619 8.90 2.41 32.82 4.46
438 446 7.533426 TGTTATAGTAGACAGTCGAAAAGTCC 58.467 38.462 8.90 0.00 32.82 3.85
439 447 8.961294 TTGTTATAGTAGACAGTCGAAAAGTC 57.039 34.615 5.32 5.32 0.00 3.01
441 449 8.967552 ACTTGTTATAGTAGACAGTCGAAAAG 57.032 34.615 0.00 0.00 0.00 2.27
477 485 1.961381 ATCACCCCTCCCTCATCGGA 61.961 60.000 0.00 0.00 33.16 4.55
479 487 0.760567 TCATCACCCCTCCCTCATCG 60.761 60.000 0.00 0.00 0.00 3.84
480 488 0.761802 GTCATCACCCCTCCCTCATC 59.238 60.000 0.00 0.00 0.00 2.92
481 489 1.050988 CGTCATCACCCCTCCCTCAT 61.051 60.000 0.00 0.00 0.00 2.90
482 490 1.685765 CGTCATCACCCCTCCCTCA 60.686 63.158 0.00 0.00 0.00 3.86
493 501 1.511305 GAAGGAGCCGACGTCATCA 59.489 57.895 17.16 0.00 0.00 3.07
501 509 4.415332 GCGTGTCGAAGGAGCCGA 62.415 66.667 0.00 0.00 0.00 5.54
502 510 3.916392 AAGCGTGTCGAAGGAGCCG 62.916 63.158 0.00 0.00 0.00 5.52
506 514 1.068748 GTACTGAAGCGTGTCGAAGGA 60.069 52.381 0.00 0.00 0.00 3.36
522 532 7.450124 TCATCTAGAAACGACTTCAAGTACT 57.550 36.000 0.00 0.00 36.40 2.73
525 535 7.164230 AGATCATCTAGAAACGACTTCAAGT 57.836 36.000 0.00 0.00 36.40 3.16
527 537 8.051901 TGTAGATCATCTAGAAACGACTTCAA 57.948 34.615 0.00 0.00 36.40 2.69
528 538 7.201741 CCTGTAGATCATCTAGAAACGACTTCA 60.202 40.741 0.00 0.00 36.40 3.02
530 540 6.603997 ACCTGTAGATCATCTAGAAACGACTT 59.396 38.462 0.00 0.00 28.01 3.01
537 547 6.019656 ACCAGACCTGTAGATCATCTAGAA 57.980 41.667 0.00 0.00 28.01 2.10
538 548 5.654901 ACCAGACCTGTAGATCATCTAGA 57.345 43.478 0.00 0.00 28.01 2.43
543 553 8.960591 CAAAATAAAACCAGACCTGTAGATCAT 58.039 33.333 0.00 0.00 0.00 2.45
546 556 9.975218 ATACAAAATAAAACCAGACCTGTAGAT 57.025 29.630 0.00 0.00 0.00 1.98
578 588 5.614449 CGATCACAACGAACATCAACATCAA 60.614 40.000 0.00 0.00 0.00 2.57
581 591 3.745975 ACGATCACAACGAACATCAACAT 59.254 39.130 0.00 0.00 34.70 2.71
584 594 3.385577 TCACGATCACAACGAACATCAA 58.614 40.909 0.00 0.00 34.70 2.57
586 596 4.584029 ATTCACGATCACAACGAACATC 57.416 40.909 0.00 0.00 34.70 3.06
587 597 5.168569 AGTATTCACGATCACAACGAACAT 58.831 37.500 0.00 0.00 34.70 2.71
589 599 4.857588 AGAGTATTCACGATCACAACGAAC 59.142 41.667 0.00 0.00 34.70 3.95
590 600 5.055642 AGAGTATTCACGATCACAACGAA 57.944 39.130 0.00 0.00 34.70 3.85
592 602 4.663166 AGAGAGTATTCACGATCACAACG 58.337 43.478 0.00 0.00 0.00 4.10
593 603 5.038033 GGAGAGAGTATTCACGATCACAAC 58.962 45.833 0.00 0.00 0.00 3.32
594 604 4.705023 TGGAGAGAGTATTCACGATCACAA 59.295 41.667 0.00 0.00 0.00 3.33
595 605 4.270008 TGGAGAGAGTATTCACGATCACA 58.730 43.478 0.00 0.00 0.00 3.58
596 606 4.902443 TGGAGAGAGTATTCACGATCAC 57.098 45.455 0.00 0.00 0.00 3.06
597 607 5.010112 GGAATGGAGAGAGTATTCACGATCA 59.990 44.000 0.00 0.00 33.57 2.92
598 608 5.242838 AGGAATGGAGAGAGTATTCACGATC 59.757 44.000 0.00 0.00 33.57 3.69
599 609 5.144100 AGGAATGGAGAGAGTATTCACGAT 58.856 41.667 0.00 0.00 33.57 3.73
600 610 4.537751 AGGAATGGAGAGAGTATTCACGA 58.462 43.478 0.00 0.00 33.57 4.35
601 611 4.927978 AGGAATGGAGAGAGTATTCACG 57.072 45.455 0.00 0.00 33.57 4.35
636 646 9.990360 TGCGGTAGTCTATTTGAAATATATGAA 57.010 29.630 0.00 0.00 0.00 2.57
640 650 9.563898 CGTATGCGGTAGTCTATTTGAAATATA 57.436 33.333 0.00 0.00 0.00 0.86
641 651 8.301720 TCGTATGCGGTAGTCTATTTGAAATAT 58.698 33.333 2.62 0.00 38.89 1.28
642 652 7.650890 TCGTATGCGGTAGTCTATTTGAAATA 58.349 34.615 2.62 0.00 38.89 1.40
643 653 6.509656 TCGTATGCGGTAGTCTATTTGAAAT 58.490 36.000 2.62 0.00 38.89 2.17
644 654 5.893687 TCGTATGCGGTAGTCTATTTGAAA 58.106 37.500 2.62 0.00 38.89 2.69
645 655 5.503662 TCGTATGCGGTAGTCTATTTGAA 57.496 39.130 2.62 0.00 38.89 2.69
646 656 5.503662 TTCGTATGCGGTAGTCTATTTGA 57.496 39.130 2.62 0.00 38.89 2.69
647 657 9.731819 ATATATTCGTATGCGGTAGTCTATTTG 57.268 33.333 2.62 0.00 38.89 2.32
652 662 9.993454 TCTATATATATTCGTATGCGGTAGTCT 57.007 33.333 2.62 0.00 38.89 3.24
654 664 9.551734 TGTCTATATATATTCGTATGCGGTAGT 57.448 33.333 2.62 0.00 38.89 2.73
690 700 7.472543 ACAGAACAAAATGAGTGAACTTACAC 58.527 34.615 0.00 0.00 40.60 2.90
691 701 7.624360 ACAGAACAAAATGAGTGAACTTACA 57.376 32.000 0.00 0.00 0.00 2.41
692 702 9.599322 CATACAGAACAAAATGAGTGAACTTAC 57.401 33.333 0.00 0.00 0.00 2.34
693 703 9.337396 ACATACAGAACAAAATGAGTGAACTTA 57.663 29.630 0.00 0.00 0.00 2.24
694 704 8.225603 ACATACAGAACAAAATGAGTGAACTT 57.774 30.769 0.00 0.00 0.00 2.66
695 705 7.807977 ACATACAGAACAAAATGAGTGAACT 57.192 32.000 0.00 0.00 0.00 3.01
696 706 8.774586 ACTACATACAGAACAAAATGAGTGAAC 58.225 33.333 0.00 0.00 0.00 3.18
697 707 8.902540 ACTACATACAGAACAAAATGAGTGAA 57.097 30.769 0.00 0.00 0.00 3.18
698 708 8.147704 TGACTACATACAGAACAAAATGAGTGA 58.852 33.333 0.00 0.00 0.00 3.41
699 709 8.310406 TGACTACATACAGAACAAAATGAGTG 57.690 34.615 0.00 0.00 0.00 3.51
700 710 9.507329 AATGACTACATACAGAACAAAATGAGT 57.493 29.630 0.00 0.00 35.50 3.41
703 713 9.897744 ACAAATGACTACATACAGAACAAAATG 57.102 29.630 0.00 0.00 35.50 2.32
721 731 9.561270 GGCTTTCTAGAGATTTTAACAAATGAC 57.439 33.333 0.00 0.00 32.35 3.06
722 732 9.295825 TGGCTTTCTAGAGATTTTAACAAATGA 57.704 29.630 0.00 0.00 32.35 2.57
723 733 9.912634 TTGGCTTTCTAGAGATTTTAACAAATG 57.087 29.630 0.00 0.00 32.35 2.32
725 735 9.131791 ACTTGGCTTTCTAGAGATTTTAACAAA 57.868 29.630 0.00 0.00 0.00 2.83
726 736 8.691661 ACTTGGCTTTCTAGAGATTTTAACAA 57.308 30.769 0.00 0.00 0.00 2.83
727 737 9.959721 ATACTTGGCTTTCTAGAGATTTTAACA 57.040 29.630 0.00 0.00 0.00 2.41
732 742 9.620259 CCTAAATACTTGGCTTTCTAGAGATTT 57.380 33.333 0.00 0.00 0.00 2.17
733 743 8.993424 TCCTAAATACTTGGCTTTCTAGAGATT 58.007 33.333 0.00 0.00 0.00 2.40
734 744 8.554490 TCCTAAATACTTGGCTTTCTAGAGAT 57.446 34.615 0.00 0.00 0.00 2.75
735 745 7.973048 TCCTAAATACTTGGCTTTCTAGAGA 57.027 36.000 0.00 0.00 0.00 3.10
736 746 7.222999 CGTTCCTAAATACTTGGCTTTCTAGAG 59.777 40.741 0.00 0.00 0.00 2.43
737 747 7.039882 CGTTCCTAAATACTTGGCTTTCTAGA 58.960 38.462 0.00 0.00 0.00 2.43
738 748 6.258068 CCGTTCCTAAATACTTGGCTTTCTAG 59.742 42.308 0.00 0.00 0.00 2.43
739 749 6.070653 TCCGTTCCTAAATACTTGGCTTTCTA 60.071 38.462 0.00 0.00 0.00 2.10
740 750 4.941873 CCGTTCCTAAATACTTGGCTTTCT 59.058 41.667 0.00 0.00 0.00 2.52
741 751 4.939439 TCCGTTCCTAAATACTTGGCTTTC 59.061 41.667 0.00 0.00 0.00 2.62
742 752 4.913784 TCCGTTCCTAAATACTTGGCTTT 58.086 39.130 0.00 0.00 0.00 3.51
743 753 4.224370 TCTCCGTTCCTAAATACTTGGCTT 59.776 41.667 0.00 0.00 0.00 4.35
744 754 3.773119 TCTCCGTTCCTAAATACTTGGCT 59.227 43.478 0.00 0.00 0.00 4.75
745 755 4.120589 CTCTCCGTTCCTAAATACTTGGC 58.879 47.826 0.00 0.00 0.00 4.52
746 756 5.593679 TCTCTCCGTTCCTAAATACTTGG 57.406 43.478 0.00 0.00 0.00 3.61
747 757 8.630917 TCTATTCTCTCCGTTCCTAAATACTTG 58.369 37.037 0.00 0.00 0.00 3.16
748 758 8.763984 TCTATTCTCTCCGTTCCTAAATACTT 57.236 34.615 0.00 0.00 0.00 2.24
749 759 8.943594 ATCTATTCTCTCCGTTCCTAAATACT 57.056 34.615 0.00 0.00 0.00 2.12
750 760 8.794553 TGATCTATTCTCTCCGTTCCTAAATAC 58.205 37.037 0.00 0.00 0.00 1.89
751 761 8.935614 TGATCTATTCTCTCCGTTCCTAAATA 57.064 34.615 0.00 0.00 0.00 1.40
752 762 7.726291 TCTGATCTATTCTCTCCGTTCCTAAAT 59.274 37.037 0.00 0.00 0.00 1.40
753 763 7.061054 TCTGATCTATTCTCTCCGTTCCTAAA 58.939 38.462 0.00 0.00 0.00 1.85
754 764 6.602278 TCTGATCTATTCTCTCCGTTCCTAA 58.398 40.000 0.00 0.00 0.00 2.69
755 765 6.189036 TCTGATCTATTCTCTCCGTTCCTA 57.811 41.667 0.00 0.00 0.00 2.94
756 766 5.055265 TCTGATCTATTCTCTCCGTTCCT 57.945 43.478 0.00 0.00 0.00 3.36
757 767 5.776173 TTCTGATCTATTCTCTCCGTTCC 57.224 43.478 0.00 0.00 0.00 3.62
758 768 8.655651 AATTTTCTGATCTATTCTCTCCGTTC 57.344 34.615 0.00 0.00 0.00 3.95
759 769 9.103861 GAAATTTTCTGATCTATTCTCTCCGTT 57.896 33.333 1.79 0.00 0.00 4.44
760 770 8.482128 AGAAATTTTCTGATCTATTCTCTCCGT 58.518 33.333 10.82 0.00 38.91 4.69
761 771 8.885494 AGAAATTTTCTGATCTATTCTCTCCG 57.115 34.615 10.82 0.00 38.91 4.63
793 803 1.551883 GGATGCATGGGAGCTGTTTTT 59.448 47.619 2.46 0.00 34.99 1.94
794 804 1.188863 GGATGCATGGGAGCTGTTTT 58.811 50.000 2.46 0.00 34.99 2.43
795 805 1.033746 CGGATGCATGGGAGCTGTTT 61.034 55.000 2.46 0.00 34.99 2.83
796 806 1.452651 CGGATGCATGGGAGCTGTT 60.453 57.895 2.46 0.00 34.99 3.16
797 807 2.191375 CGGATGCATGGGAGCTGT 59.809 61.111 2.46 0.00 34.99 4.40
798 808 2.593725 CCGGATGCATGGGAGCTG 60.594 66.667 2.46 0.00 34.99 4.24
799 809 3.092511 ACCGGATGCATGGGAGCT 61.093 61.111 9.46 0.00 34.99 4.09
800 810 2.903855 CACCGGATGCATGGGAGC 60.904 66.667 9.46 0.00 0.00 4.70
809 819 0.888736 TCAAACTGGTGCACCGGATG 60.889 55.000 44.14 37.03 45.36 3.51
810 820 0.038166 ATCAAACTGGTGCACCGGAT 59.962 50.000 44.14 33.44 45.36 4.18
811 821 0.888736 CATCAAACTGGTGCACCGGA 60.889 55.000 44.14 28.00 45.36 5.14
813 823 1.580942 CCATCAAACTGGTGCACCG 59.419 57.895 30.07 25.11 39.43 4.94
820 830 2.616376 TCGTGTGAAACCATCAAACTGG 59.384 45.455 0.00 0.00 43.14 4.00
821 831 3.961477 TCGTGTGAAACCATCAAACTG 57.039 42.857 0.00 0.00 43.14 3.16
822 832 4.151689 CGTATCGTGTGAAACCATCAAACT 59.848 41.667 0.00 0.00 43.14 2.66
823 833 4.084223 ACGTATCGTGTGAAACCATCAAAC 60.084 41.667 0.00 0.00 42.07 2.93
824 834 4.059511 ACGTATCGTGTGAAACCATCAAA 58.940 39.130 0.00 0.00 39.18 2.69
825 835 3.655486 ACGTATCGTGTGAAACCATCAA 58.345 40.909 0.00 0.00 39.18 2.57
826 836 3.306917 ACGTATCGTGTGAAACCATCA 57.693 42.857 0.00 0.00 39.18 3.07
827 837 4.657075 AAACGTATCGTGTGAAACCATC 57.343 40.909 0.00 0.00 39.99 3.51
828 838 4.376615 CGAAAACGTATCGTGTGAAACCAT 60.377 41.667 13.72 0.00 39.99 3.55
829 839 3.060406 CGAAAACGTATCGTGTGAAACCA 60.060 43.478 13.72 0.00 39.99 3.67
830 840 3.463127 CGAAAACGTATCGTGTGAAACC 58.537 45.455 13.72 0.00 39.99 3.27
831 841 3.463127 CCGAAAACGTATCGTGTGAAAC 58.537 45.455 18.61 0.00 39.99 2.78
832 842 2.475864 CCCGAAAACGTATCGTGTGAAA 59.524 45.455 18.61 0.00 39.99 2.69
833 843 2.060284 CCCGAAAACGTATCGTGTGAA 58.940 47.619 18.61 0.00 39.99 3.18
834 844 1.700523 CCCGAAAACGTATCGTGTGA 58.299 50.000 18.61 0.00 39.99 3.58
835 845 0.094046 GCCCGAAAACGTATCGTGTG 59.906 55.000 18.61 10.24 39.99 3.82
836 846 0.319727 TGCCCGAAAACGTATCGTGT 60.320 50.000 18.61 0.00 39.99 4.49
837 847 0.094046 GTGCCCGAAAACGTATCGTG 59.906 55.000 18.61 11.12 39.99 4.35
838 848 1.346378 CGTGCCCGAAAACGTATCGT 61.346 55.000 18.61 0.00 37.85 3.73
839 849 1.342473 CGTGCCCGAAAACGTATCG 59.658 57.895 14.69 14.69 39.92 2.92
840 850 1.059838 GCGTGCCCGAAAACGTATC 59.940 57.895 0.00 0.00 41.76 2.24
841 851 2.392974 GGCGTGCCCGAAAACGTAT 61.393 57.895 0.00 0.00 41.76 3.06
842 852 3.043121 GGCGTGCCCGAAAACGTA 61.043 61.111 0.00 0.00 41.76 3.57
937 2004 3.418068 GCGATGCTCTATGGCGGC 61.418 66.667 0.00 0.00 30.73 6.53
972 2040 2.354510 CGACTGACAAAACCTCTTTGCA 59.645 45.455 0.00 0.00 32.93 4.08
1005 2076 1.008538 GCGTTTTCTGGGCTGTGTG 60.009 57.895 0.00 0.00 0.00 3.82
1006 2077 2.193536 GGCGTTTTCTGGGCTGTGT 61.194 57.895 0.00 0.00 0.00 3.72
1007 2078 2.644992 GGCGTTTTCTGGGCTGTG 59.355 61.111 0.00 0.00 0.00 3.66
1008 2079 2.597510 GGGCGTTTTCTGGGCTGT 60.598 61.111 0.00 0.00 0.00 4.40
1011 2082 2.266376 GAATCGGGCGTTTTCTGGGC 62.266 60.000 0.00 0.00 0.00 5.36
1013 2084 0.958382 TGGAATCGGGCGTTTTCTGG 60.958 55.000 0.00 0.00 0.00 3.86
1014 2085 0.878416 TTGGAATCGGGCGTTTTCTG 59.122 50.000 0.00 0.00 0.00 3.02
1015 2086 1.834188 ATTGGAATCGGGCGTTTTCT 58.166 45.000 0.00 0.00 0.00 2.52
1016 2087 2.526077 GAATTGGAATCGGGCGTTTTC 58.474 47.619 0.00 0.00 0.00 2.29
1017 2088 1.203758 GGAATTGGAATCGGGCGTTTT 59.796 47.619 0.00 0.00 0.00 2.43
1465 2536 3.311110 GACAGGTCCCACGCCAGA 61.311 66.667 0.00 0.00 0.00 3.86
1784 2855 2.370189 AGTCCACTTCCTCACCAAAGAG 59.630 50.000 0.00 0.00 35.39 2.85
1790 2861 3.351126 TGGAGAAGTCCACTTCCTCACC 61.351 54.545 14.61 13.05 46.77 4.02
1821 2892 1.966451 GTGCTCCGGTGGTTCAAGG 60.966 63.158 0.00 0.00 0.00 3.61
1823 2894 2.112297 GGTGCTCCGGTGGTTCAA 59.888 61.111 0.00 0.00 0.00 2.69
1992 3066 5.023533 AGCCGATACACTGTATTTCACAT 57.976 39.130 3.14 0.00 36.29 3.21
2024 3098 4.856607 CTTCGAGGTCCGGCTCGC 62.857 72.222 22.21 7.01 42.17 5.03
2025 3099 2.600122 CTTCTTCGAGGTCCGGCTCG 62.600 65.000 21.32 21.32 43.59 5.03
2038 3112 1.997928 GCCGGCATGGAAGCTTCTTC 61.998 60.000 24.80 10.82 42.00 2.87
2048 3122 3.197790 CTCGTTCAGCCGGCATGG 61.198 66.667 31.54 17.97 42.50 3.66
2217 3291 1.888512 ACATAGGCAAGTGCAAAGGTG 59.111 47.619 5.52 0.00 44.36 4.00
2307 3381 6.266558 AGAATCTAGGAGCGTCTAAATGACAT 59.733 38.462 0.00 0.00 45.60 3.06
2308 3382 5.594725 AGAATCTAGGAGCGTCTAAATGACA 59.405 40.000 0.00 0.00 45.60 3.58
2312 3386 6.716934 TTCAGAATCTAGGAGCGTCTAAAT 57.283 37.500 0.00 0.00 0.00 1.40
2359 3433 9.462174 CTAGAAGCTTAAATACATCTCACAGAG 57.538 37.037 0.00 0.00 0.00 3.35
2376 3450 6.412362 TGAAACTTGAGAGTCTAGAAGCTT 57.588 37.500 0.00 0.00 34.21 3.74
2377 3451 6.437162 AGATGAAACTTGAGAGTCTAGAAGCT 59.563 38.462 10.15 0.00 34.21 3.74
2378 3452 6.630071 AGATGAAACTTGAGAGTCTAGAAGC 58.370 40.000 10.15 0.00 34.21 3.86
2379 3453 7.759433 GGAAGATGAAACTTGAGAGTCTAGAAG 59.241 40.741 0.00 9.05 34.21 2.85
2380 3454 7.233553 TGGAAGATGAAACTTGAGAGTCTAGAA 59.766 37.037 0.00 0.00 34.21 2.10
2381 3455 6.721668 TGGAAGATGAAACTTGAGAGTCTAGA 59.278 38.462 0.00 0.00 34.21 2.43
2511 3587 7.519002 ACTGACTCAGTTAATCGCATAAAAAC 58.481 34.615 5.82 0.00 42.59 2.43
2531 3608 1.615883 TGTCCAGCTTCTGAGACTGAC 59.384 52.381 9.74 7.28 34.85 3.51
2585 3664 1.533625 TGGAAGTTTCCTTCGCATGG 58.466 50.000 11.89 0.00 46.72 3.66
2586 3665 4.790766 GCATATGGAAGTTTCCTTCGCATG 60.791 45.833 11.89 7.70 46.72 4.06
2772 3852 2.939103 CCTCAGGGATGTCATTTCGTTC 59.061 50.000 0.00 0.00 33.58 3.95
2858 3939 4.512571 CCATGATCATTACATCAGTCGCAA 59.487 41.667 5.16 0.00 36.22 4.85
2859 3940 4.060205 CCATGATCATTACATCAGTCGCA 58.940 43.478 5.16 0.00 36.22 5.10
2895 3976 9.338622 CTCCCTCCGTTTTAAAATAGATGTAAT 57.661 33.333 3.52 0.00 0.00 1.89
2896 3977 8.323567 ACTCCCTCCGTTTTAAAATAGATGTAA 58.676 33.333 3.52 0.00 0.00 2.41
2897 3978 7.854337 ACTCCCTCCGTTTTAAAATAGATGTA 58.146 34.615 3.52 0.00 0.00 2.29
2898 3979 6.718294 ACTCCCTCCGTTTTAAAATAGATGT 58.282 36.000 3.52 1.12 0.00 3.06
2899 3980 8.202137 TCTACTCCCTCCGTTTTAAAATAGATG 58.798 37.037 3.52 2.01 0.00 2.90
2901 3982 7.722949 TCTACTCCCTCCGTTTTAAAATAGA 57.277 36.000 3.52 3.61 0.00 1.98
2902 3983 8.827677 CATTCTACTCCCTCCGTTTTAAAATAG 58.172 37.037 3.52 1.99 0.00 1.73
2903 3984 7.771826 CCATTCTACTCCCTCCGTTTTAAAATA 59.228 37.037 3.52 0.00 0.00 1.40
2905 3986 5.941647 CCATTCTACTCCCTCCGTTTTAAAA 59.058 40.000 0.00 0.00 0.00 1.52
2906 3987 5.248934 TCCATTCTACTCCCTCCGTTTTAAA 59.751 40.000 0.00 0.00 0.00 1.52
2907 3988 4.778958 TCCATTCTACTCCCTCCGTTTTAA 59.221 41.667 0.00 0.00 0.00 1.52
2908 3989 4.355549 TCCATTCTACTCCCTCCGTTTTA 58.644 43.478 0.00 0.00 0.00 1.52
2910 3991 2.829023 TCCATTCTACTCCCTCCGTTT 58.171 47.619 0.00 0.00 0.00 3.60
2911 3992 2.544844 TCCATTCTACTCCCTCCGTT 57.455 50.000 0.00 0.00 0.00 4.44
2912 3993 2.544844 TTCCATTCTACTCCCTCCGT 57.455 50.000 0.00 0.00 0.00 4.69
2913 3994 2.483889 GCTTTCCATTCTACTCCCTCCG 60.484 54.545 0.00 0.00 0.00 4.63
2914 3995 2.505819 TGCTTTCCATTCTACTCCCTCC 59.494 50.000 0.00 0.00 0.00 4.30
2915 3996 3.198853 AGTGCTTTCCATTCTACTCCCTC 59.801 47.826 0.00 0.00 0.00 4.30
2916 3997 3.185455 AGTGCTTTCCATTCTACTCCCT 58.815 45.455 0.00 0.00 0.00 4.20
2917 3998 3.636153 AGTGCTTTCCATTCTACTCCC 57.364 47.619 0.00 0.00 0.00 4.30
2918 3999 3.691609 CCAAGTGCTTTCCATTCTACTCC 59.308 47.826 0.00 0.00 0.00 3.85
2919 4000 4.579869 TCCAAGTGCTTTCCATTCTACTC 58.420 43.478 0.00 0.00 0.00 2.59
2920 4001 4.640771 TCCAAGTGCTTTCCATTCTACT 57.359 40.909 0.00 0.00 0.00 2.57
2937 4018 2.223745 GCTTAGACAAACCGGTTCCAA 58.776 47.619 22.53 9.27 0.00 3.53
2938 4019 1.141254 TGCTTAGACAAACCGGTTCCA 59.859 47.619 22.53 5.19 0.00 3.53
2963 4047 3.181537 GCTCGATAACCACAACGTACAAC 60.182 47.826 0.00 0.00 0.00 3.32
2964 4048 2.988493 GCTCGATAACCACAACGTACAA 59.012 45.455 0.00 0.00 0.00 2.41
2965 4049 2.030096 TGCTCGATAACCACAACGTACA 60.030 45.455 0.00 0.00 0.00 2.90
2966 4050 2.598589 TGCTCGATAACCACAACGTAC 58.401 47.619 0.00 0.00 0.00 3.67
2967 4051 2.988493 GTTGCTCGATAACCACAACGTA 59.012 45.455 0.00 0.00 32.24 3.57
2968 4052 1.796459 GTTGCTCGATAACCACAACGT 59.204 47.619 0.00 0.00 32.24 3.99
2969 4053 1.795872 TGTTGCTCGATAACCACAACG 59.204 47.619 9.40 0.00 42.68 4.10
2970 4054 3.426159 CCATGTTGCTCGATAACCACAAC 60.426 47.826 9.40 0.00 40.72 3.32
2971 4055 2.746904 CCATGTTGCTCGATAACCACAA 59.253 45.455 9.40 0.00 0.00 3.33
2972 4056 2.355197 CCATGTTGCTCGATAACCACA 58.645 47.619 9.40 1.18 0.00 4.17
2988 4072 6.260936 ACTGCGAAAATAGAATTAGACCCATG 59.739 38.462 0.00 0.00 0.00 3.66
3000 4084 8.407064 TGTTTTAAAAGGAACTGCGAAAATAGA 58.593 29.630 0.00 0.00 40.86 1.98
3001 4085 8.568732 TGTTTTAAAAGGAACTGCGAAAATAG 57.431 30.769 0.00 0.00 40.86 1.73
3008 4092 6.899114 AGAGTATGTTTTAAAAGGAACTGCG 58.101 36.000 0.00 0.00 40.86 5.18
3019 4103 9.434275 TCATAGGATGGAGAGAGTATGTTTTAA 57.566 33.333 0.00 0.00 0.00 1.52
3066 4150 9.090692 GAGTACATTGGTTGTAATAACATACGT 57.909 33.333 0.00 0.00 42.37 3.57
3071 4155 9.945904 TGTATGAGTACATTGGTTGTAATAACA 57.054 29.630 0.00 0.00 42.37 2.41
3108 6114 4.509616 ACGCAGTGGCATATTTAGTGTTA 58.490 39.130 0.00 0.00 42.51 2.41
3109 6115 3.343617 ACGCAGTGGCATATTTAGTGTT 58.656 40.909 0.00 0.00 42.51 3.32
3110 6116 2.985896 ACGCAGTGGCATATTTAGTGT 58.014 42.857 0.00 0.00 42.51 3.55
3111 6117 4.331443 TGTAACGCAGTGGCATATTTAGTG 59.669 41.667 0.00 0.00 45.00 2.74
3112 6118 4.509616 TGTAACGCAGTGGCATATTTAGT 58.490 39.130 0.00 0.00 45.00 2.24
3113 6119 5.263185 GTTGTAACGCAGTGGCATATTTAG 58.737 41.667 0.00 0.00 45.00 1.85
3114 6120 5.224562 GTTGTAACGCAGTGGCATATTTA 57.775 39.130 0.00 0.00 45.00 1.40
3115 6121 4.091453 GTTGTAACGCAGTGGCATATTT 57.909 40.909 0.00 0.00 45.00 1.40
3116 6122 3.757745 GTTGTAACGCAGTGGCATATT 57.242 42.857 0.00 0.00 45.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.