Multiple sequence alignment - TraesCS6B01G270300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G270300 chr6B 100.000 3672 0 0 1 3672 487132203 487135874 0.000000e+00 6782
1 TraesCS6B01G270300 chr6D 93.588 2979 124 26 496 3455 333349783 333346853 0.000000e+00 4381
2 TraesCS6B01G270300 chr6D 90.094 212 7 6 3461 3672 333345980 333345783 2.810000e-66 263
3 TraesCS6B01G270300 chr6A 91.629 2879 146 40 505 3351 472950479 472947664 0.000000e+00 3893
4 TraesCS6B01G270300 chr6A 91.923 260 14 4 3414 3672 472947638 472947385 1.250000e-94 357
5 TraesCS6B01G270300 chr2A 78.258 1550 282 43 1037 2553 656702438 656703965 0.000000e+00 944
6 TraesCS6B01G270300 chr2B 78.079 1551 279 48 1036 2553 603426256 603427778 0.000000e+00 924
7 TraesCS6B01G270300 chr2B 82.278 316 49 7 49 362 67535672 67535982 2.170000e-67 267
8 TraesCS6B01G270300 chr2B 82.222 315 50 6 45 358 640457316 640457007 2.170000e-67 267
9 TraesCS6B01G270300 chr2D 77.899 1552 290 39 1033 2553 512923097 512924626 0.000000e+00 917
10 TraesCS6B01G270300 chr2D 93.711 318 19 1 49 366 201192939 201192623 3.320000e-130 475
11 TraesCS6B01G270300 chr7D 93.269 312 21 0 49 360 471971435 471971124 9.290000e-126 460
12 TraesCS6B01G270300 chr5D 92.029 276 21 1 49 324 425814739 425814465 1.600000e-103 387
13 TraesCS6B01G270300 chr4A 89.892 277 26 2 49 324 505493856 505494131 4.510000e-94 355
14 TraesCS6B01G270300 chr4D 87.025 316 37 4 49 362 340018891 340018578 1.620000e-93 353
15 TraesCS6B01G270300 chr1A 86.901 313 33 2 49 361 111852773 111853077 9.760000e-91 344
16 TraesCS6B01G270300 chr4B 84.590 305 42 4 49 349 424715050 424715353 7.710000e-77 298


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G270300 chr6B 487132203 487135874 3671 False 6782 6782 100.000 1 3672 1 chr6B.!!$F1 3671
1 TraesCS6B01G270300 chr6D 333345783 333349783 4000 True 2322 4381 91.841 496 3672 2 chr6D.!!$R1 3176
2 TraesCS6B01G270300 chr6A 472947385 472950479 3094 True 2125 3893 91.776 505 3672 2 chr6A.!!$R1 3167
3 TraesCS6B01G270300 chr2A 656702438 656703965 1527 False 944 944 78.258 1037 2553 1 chr2A.!!$F1 1516
4 TraesCS6B01G270300 chr2B 603426256 603427778 1522 False 924 924 78.079 1036 2553 1 chr2B.!!$F2 1517
5 TraesCS6B01G270300 chr2D 512923097 512924626 1529 False 917 917 77.899 1033 2553 1 chr2D.!!$F1 1520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 207 0.031857 TTCGTTGGCCTTGCATTGTG 59.968 50.0 3.32 0.0 0.00 3.33 F
217 218 0.108186 TGCATTGTGGGAGAGTAGCG 60.108 55.0 0.00 0.0 0.00 4.26 F
664 677 0.109532 TCCACCCTGACAAATGCGAA 59.890 50.0 0.00 0.0 0.00 4.70 F
665 678 0.523072 CCACCCTGACAAATGCGAAG 59.477 55.0 0.00 0.0 0.00 3.79 F
1635 1672 0.713883 CTTCGTGCGCACTCGTAAAT 59.286 50.0 35.27 0.0 38.14 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1191 1211 0.036388 GCACCACTTTCCTCGGATCA 60.036 55.000 0.00 0.0 0.0 2.92 R
1852 1894 0.531532 CGGCGAGGCAGATGAAGATT 60.532 55.000 0.00 0.0 0.0 2.40 R
2428 2485 2.202932 GGCATGGCGTCGATCAGT 60.203 61.111 2.41 0.0 0.0 3.41 R
2662 2719 2.830104 AGACGCTCGTTTTAAACCTGT 58.170 42.857 1.97 0.0 0.0 4.00 R
3500 4443 0.114364 TCTCCCAGTACCTCAGTGCA 59.886 55.000 0.00 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.653287 TTCTACTCCACATAAAGAAACATAGTG 57.347 33.333 0.00 0.00 0.00 2.74
35 36 6.743575 ACTCCACATAAAGAAACATAGTGC 57.256 37.500 0.00 0.00 0.00 4.40
36 37 6.476378 ACTCCACATAAAGAAACATAGTGCT 58.524 36.000 0.00 0.00 0.00 4.40
37 38 6.942576 ACTCCACATAAAGAAACATAGTGCTT 59.057 34.615 0.00 0.00 0.00 3.91
38 39 7.119846 ACTCCACATAAAGAAACATAGTGCTTC 59.880 37.037 0.00 0.00 0.00 3.86
39 40 6.939730 TCCACATAAAGAAACATAGTGCTTCA 59.060 34.615 0.00 0.00 0.00 3.02
40 41 7.023575 CCACATAAAGAAACATAGTGCTTCAC 58.976 38.462 0.00 0.00 34.10 3.18
41 42 7.308529 CCACATAAAGAAACATAGTGCTTCACA 60.309 37.037 0.00 0.00 36.74 3.58
55 56 4.460263 TGCTTCACACAACTAATGGAAGT 58.540 39.130 0.00 0.00 35.41 3.01
56 57 4.887071 TGCTTCACACAACTAATGGAAGTT 59.113 37.500 0.00 0.00 40.33 2.66
65 66 4.431416 ACTAATGGAAGTTGTGGACACA 57.569 40.909 0.13 0.13 39.98 3.72
75 76 2.921374 GTGGACACACCGTAATGCA 58.079 52.632 0.00 0.00 41.84 3.96
76 77 0.796312 GTGGACACACCGTAATGCAG 59.204 55.000 0.00 0.00 41.84 4.41
77 78 0.394938 TGGACACACCGTAATGCAGT 59.605 50.000 0.00 0.00 42.61 4.40
78 79 0.796312 GGACACACCGTAATGCAGTG 59.204 55.000 0.00 0.00 37.53 3.66
79 80 0.796312 GACACACCGTAATGCAGTGG 59.204 55.000 0.00 0.00 35.79 4.00
80 81 0.107831 ACACACCGTAATGCAGTGGT 59.892 50.000 0.00 0.00 35.79 4.16
81 82 0.796312 CACACCGTAATGCAGTGGTC 59.204 55.000 0.00 0.00 35.79 4.02
82 83 0.685097 ACACCGTAATGCAGTGGTCT 59.315 50.000 0.00 0.00 35.79 3.85
83 84 1.071699 ACACCGTAATGCAGTGGTCTT 59.928 47.619 0.00 0.00 35.79 3.01
84 85 2.151202 CACCGTAATGCAGTGGTCTTT 58.849 47.619 0.00 0.00 30.72 2.52
85 86 2.095768 CACCGTAATGCAGTGGTCTTTG 60.096 50.000 0.00 0.00 30.72 2.77
86 87 2.224426 ACCGTAATGCAGTGGTCTTTGA 60.224 45.455 0.00 0.00 0.00 2.69
87 88 2.159627 CCGTAATGCAGTGGTCTTTGAC 59.840 50.000 0.00 0.00 0.00 3.18
88 89 2.159841 CGTAATGCAGTGGTCTTTGACG 60.160 50.000 0.00 0.00 32.65 4.35
89 90 1.238439 AATGCAGTGGTCTTTGACGG 58.762 50.000 0.00 0.00 32.65 4.79
90 91 0.396435 ATGCAGTGGTCTTTGACGGA 59.604 50.000 0.00 0.00 32.65 4.69
91 92 0.249868 TGCAGTGGTCTTTGACGGAG 60.250 55.000 0.00 0.00 32.65 4.63
92 93 1.569479 GCAGTGGTCTTTGACGGAGC 61.569 60.000 0.00 0.00 32.65 4.70
93 94 1.006102 AGTGGTCTTTGACGGAGCG 60.006 57.895 0.00 0.00 34.38 5.03
94 95 2.027625 GTGGTCTTTGACGGAGCGG 61.028 63.158 0.00 0.00 34.38 5.52
95 96 3.119096 GGTCTTTGACGGAGCGGC 61.119 66.667 0.00 0.00 32.65 6.53
96 97 3.479269 GTCTTTGACGGAGCGGCG 61.479 66.667 0.51 0.51 37.93 6.46
113 114 4.760047 GCCATCCACACTCGCGGT 62.760 66.667 6.13 0.00 0.00 5.68
121 122 2.049156 CACTCGCGGTGCTCAAGA 60.049 61.111 6.13 0.00 39.22 3.02
122 123 2.091112 CACTCGCGGTGCTCAAGAG 61.091 63.158 6.13 0.00 39.22 2.85
134 135 2.879002 CTCAAGAGCATAGGAAGCGA 57.121 50.000 0.00 0.00 37.01 4.93
135 136 2.741612 CTCAAGAGCATAGGAAGCGAG 58.258 52.381 0.00 0.00 37.01 5.03
136 137 1.410517 TCAAGAGCATAGGAAGCGAGG 59.589 52.381 0.00 0.00 37.01 4.63
137 138 0.105778 AAGAGCATAGGAAGCGAGGC 59.894 55.000 0.00 0.00 37.01 4.70
138 139 1.301322 GAGCATAGGAAGCGAGGCC 60.301 63.158 0.00 0.00 37.01 5.19
139 140 2.032860 GAGCATAGGAAGCGAGGCCA 62.033 60.000 5.01 0.00 37.01 5.36
140 141 1.596477 GCATAGGAAGCGAGGCCAG 60.596 63.158 5.01 0.00 0.00 4.85
141 142 1.070445 CATAGGAAGCGAGGCCAGG 59.930 63.158 5.01 0.00 0.00 4.45
142 143 2.143419 ATAGGAAGCGAGGCCAGGG 61.143 63.158 5.01 0.00 0.00 4.45
146 147 4.729918 AAGCGAGGCCAGGGCTTG 62.730 66.667 23.90 23.90 44.69 4.01
160 161 3.993535 CTTGGAAGCAGGCAGGAC 58.006 61.111 0.00 0.00 0.00 3.85
161 162 1.377994 CTTGGAAGCAGGCAGGACT 59.622 57.895 0.00 0.00 0.00 3.85
162 163 0.615331 CTTGGAAGCAGGCAGGACTA 59.385 55.000 0.00 0.00 0.00 2.59
163 164 0.324943 TTGGAAGCAGGCAGGACTAC 59.675 55.000 0.00 0.00 0.00 2.73
164 165 0.545309 TGGAAGCAGGCAGGACTACT 60.545 55.000 0.00 0.00 0.00 2.57
173 174 3.691820 CAGGACTACTGTGAGGGGA 57.308 57.895 0.00 0.00 42.42 4.81
174 175 1.938585 CAGGACTACTGTGAGGGGAA 58.061 55.000 0.00 0.00 42.42 3.97
175 176 1.827969 CAGGACTACTGTGAGGGGAAG 59.172 57.143 0.00 0.00 42.42 3.46
176 177 1.433592 AGGACTACTGTGAGGGGAAGT 59.566 52.381 0.00 0.00 0.00 3.01
177 178 1.826096 GGACTACTGTGAGGGGAAGTC 59.174 57.143 0.00 0.00 34.08 3.01
178 179 1.473278 GACTACTGTGAGGGGAAGTCG 59.527 57.143 0.00 0.00 0.00 4.18
179 180 1.075050 ACTACTGTGAGGGGAAGTCGA 59.925 52.381 0.00 0.00 0.00 4.20
180 181 1.746220 CTACTGTGAGGGGAAGTCGAG 59.254 57.143 0.00 0.00 0.00 4.04
181 182 0.112606 ACTGTGAGGGGAAGTCGAGA 59.887 55.000 0.00 0.00 0.00 4.04
182 183 0.528470 CTGTGAGGGGAAGTCGAGAC 59.472 60.000 0.00 0.00 0.00 3.36
183 184 1.241990 TGTGAGGGGAAGTCGAGACG 61.242 60.000 0.00 0.00 36.20 4.18
184 185 1.074423 TGAGGGGAAGTCGAGACGT 59.926 57.895 0.00 0.00 36.20 4.34
185 186 0.538977 TGAGGGGAAGTCGAGACGTT 60.539 55.000 0.00 0.00 36.20 3.99
186 187 0.170784 GAGGGGAAGTCGAGACGTTC 59.829 60.000 0.00 3.03 36.20 3.95
187 188 0.251253 AGGGGAAGTCGAGACGTTCT 60.251 55.000 0.00 0.00 36.20 3.01
188 189 0.602060 GGGGAAGTCGAGACGTTCTT 59.398 55.000 0.00 0.00 36.20 2.52
189 190 1.402588 GGGGAAGTCGAGACGTTCTTC 60.403 57.143 15.93 15.93 37.74 2.87
190 191 1.604396 GGAAGTCGAGACGTTCTTCG 58.396 55.000 10.57 10.57 46.00 3.79
200 201 1.082104 CGTTCTTCGTTGGCCTTGC 60.082 57.895 3.32 0.00 34.52 4.01
201 202 1.781025 CGTTCTTCGTTGGCCTTGCA 61.781 55.000 3.32 0.00 34.52 4.08
202 203 0.598065 GTTCTTCGTTGGCCTTGCAT 59.402 50.000 3.32 0.00 0.00 3.96
203 204 1.000274 GTTCTTCGTTGGCCTTGCATT 60.000 47.619 3.32 0.00 0.00 3.56
204 205 0.597568 TCTTCGTTGGCCTTGCATTG 59.402 50.000 3.32 0.00 0.00 2.82
205 206 0.314935 CTTCGTTGGCCTTGCATTGT 59.685 50.000 3.32 0.00 0.00 2.71
206 207 0.031857 TTCGTTGGCCTTGCATTGTG 59.968 50.000 3.32 0.00 0.00 3.33
207 208 1.373246 CGTTGGCCTTGCATTGTGG 60.373 57.895 3.32 0.00 0.00 4.17
208 209 1.004679 GTTGGCCTTGCATTGTGGG 60.005 57.895 3.32 0.00 0.00 4.61
209 210 1.152376 TTGGCCTTGCATTGTGGGA 60.152 52.632 3.32 0.00 0.00 4.37
210 211 1.186917 TTGGCCTTGCATTGTGGGAG 61.187 55.000 3.32 0.00 0.00 4.30
211 212 1.304381 GGCCTTGCATTGTGGGAGA 60.304 57.895 0.00 0.00 0.00 3.71
212 213 1.318158 GGCCTTGCATTGTGGGAGAG 61.318 60.000 0.00 0.00 0.00 3.20
213 214 0.610232 GCCTTGCATTGTGGGAGAGT 60.610 55.000 0.00 0.00 0.00 3.24
214 215 1.340017 GCCTTGCATTGTGGGAGAGTA 60.340 52.381 0.00 0.00 0.00 2.59
215 216 2.636830 CCTTGCATTGTGGGAGAGTAG 58.363 52.381 0.00 0.00 0.00 2.57
216 217 2.012673 CTTGCATTGTGGGAGAGTAGC 58.987 52.381 0.00 0.00 0.00 3.58
217 218 0.108186 TGCATTGTGGGAGAGTAGCG 60.108 55.000 0.00 0.00 0.00 4.26
218 219 0.175760 GCATTGTGGGAGAGTAGCGA 59.824 55.000 0.00 0.00 0.00 4.93
219 220 1.804372 GCATTGTGGGAGAGTAGCGAG 60.804 57.143 0.00 0.00 0.00 5.03
220 221 1.478510 CATTGTGGGAGAGTAGCGAGT 59.521 52.381 0.00 0.00 0.00 4.18
221 222 2.502142 TTGTGGGAGAGTAGCGAGTA 57.498 50.000 0.00 0.00 0.00 2.59
222 223 2.039818 TGTGGGAGAGTAGCGAGTAG 57.960 55.000 0.00 0.00 0.00 2.57
223 224 1.281287 TGTGGGAGAGTAGCGAGTAGT 59.719 52.381 0.00 0.00 0.00 2.73
224 225 1.941975 GTGGGAGAGTAGCGAGTAGTC 59.058 57.143 0.00 0.00 0.00 2.59
225 226 1.134159 TGGGAGAGTAGCGAGTAGTCC 60.134 57.143 0.00 0.00 32.00 3.85
226 227 1.141455 GGGAGAGTAGCGAGTAGTCCT 59.859 57.143 0.00 0.00 32.00 3.85
227 228 2.486918 GGAGAGTAGCGAGTAGTCCTC 58.513 57.143 0.00 0.00 36.80 3.71
228 229 2.158928 GGAGAGTAGCGAGTAGTCCTCA 60.159 54.545 0.00 0.00 40.48 3.86
229 230 3.495453 GGAGAGTAGCGAGTAGTCCTCAT 60.495 52.174 0.00 0.00 40.48 2.90
230 231 4.131596 GAGAGTAGCGAGTAGTCCTCATT 58.868 47.826 0.00 0.00 40.48 2.57
231 232 5.293319 AGAGTAGCGAGTAGTCCTCATTA 57.707 43.478 0.00 0.00 40.48 1.90
232 233 5.302360 AGAGTAGCGAGTAGTCCTCATTAG 58.698 45.833 0.00 0.00 40.48 1.73
233 234 3.816523 AGTAGCGAGTAGTCCTCATTAGC 59.183 47.826 0.00 0.00 40.48 3.09
234 235 1.604755 AGCGAGTAGTCCTCATTAGCG 59.395 52.381 0.00 0.00 40.48 4.26
235 236 1.602851 GCGAGTAGTCCTCATTAGCGA 59.397 52.381 0.00 0.00 40.48 4.93
236 237 2.350007 GCGAGTAGTCCTCATTAGCGAG 60.350 54.545 0.00 0.00 40.48 5.03
237 238 3.132160 CGAGTAGTCCTCATTAGCGAGA 58.868 50.000 0.00 0.00 40.48 4.04
238 239 3.749088 CGAGTAGTCCTCATTAGCGAGAT 59.251 47.826 0.00 0.00 40.48 2.75
239 240 4.930405 CGAGTAGTCCTCATTAGCGAGATA 59.070 45.833 0.00 0.00 40.48 1.98
240 241 5.062934 CGAGTAGTCCTCATTAGCGAGATAG 59.937 48.000 0.00 0.00 40.48 2.08
241 242 5.250200 AGTAGTCCTCATTAGCGAGATAGG 58.750 45.833 0.00 0.00 34.79 2.57
242 243 2.823154 AGTCCTCATTAGCGAGATAGGC 59.177 50.000 0.00 0.00 34.79 3.93
243 244 2.558795 GTCCTCATTAGCGAGATAGGCA 59.441 50.000 0.00 0.00 34.79 4.75
244 245 2.822561 TCCTCATTAGCGAGATAGGCAG 59.177 50.000 0.00 0.00 34.79 4.85
245 246 2.094286 CCTCATTAGCGAGATAGGCAGG 60.094 54.545 0.00 0.00 34.79 4.85
246 247 2.560542 CTCATTAGCGAGATAGGCAGGT 59.439 50.000 0.00 0.00 34.79 4.00
247 248 2.297315 TCATTAGCGAGATAGGCAGGTG 59.703 50.000 0.00 0.00 0.00 4.00
248 249 1.040646 TTAGCGAGATAGGCAGGTGG 58.959 55.000 0.00 0.00 0.00 4.61
249 250 0.827925 TAGCGAGATAGGCAGGTGGG 60.828 60.000 0.00 0.00 0.00 4.61
250 251 3.142393 CGAGATAGGCAGGTGGGG 58.858 66.667 0.00 0.00 0.00 4.96
251 252 1.762460 CGAGATAGGCAGGTGGGGT 60.762 63.158 0.00 0.00 0.00 4.95
252 253 1.832912 GAGATAGGCAGGTGGGGTG 59.167 63.158 0.00 0.00 0.00 4.61
253 254 0.691078 GAGATAGGCAGGTGGGGTGA 60.691 60.000 0.00 0.00 0.00 4.02
254 255 0.983378 AGATAGGCAGGTGGGGTGAC 60.983 60.000 0.00 0.00 0.00 3.67
271 272 2.937591 TGACCGTCGAGTCATTTGTAC 58.062 47.619 11.11 0.00 41.78 2.90
272 273 2.293955 TGACCGTCGAGTCATTTGTACA 59.706 45.455 11.11 0.00 41.78 2.90
273 274 3.057104 TGACCGTCGAGTCATTTGTACAT 60.057 43.478 11.11 0.00 41.78 2.29
274 275 4.156373 TGACCGTCGAGTCATTTGTACATA 59.844 41.667 11.11 0.00 41.78 2.29
275 276 5.063180 ACCGTCGAGTCATTTGTACATAA 57.937 39.130 0.00 0.00 0.00 1.90
276 277 4.860907 ACCGTCGAGTCATTTGTACATAAC 59.139 41.667 0.00 0.00 0.00 1.89
277 278 4.860352 CCGTCGAGTCATTTGTACATAACA 59.140 41.667 0.00 0.00 35.88 2.41
278 279 5.518847 CCGTCGAGTCATTTGTACATAACAT 59.481 40.000 0.00 0.00 38.10 2.71
279 280 6.035650 CCGTCGAGTCATTTGTACATAACATT 59.964 38.462 0.00 0.00 38.10 2.71
280 281 6.894517 CGTCGAGTCATTTGTACATAACATTG 59.105 38.462 0.00 0.00 38.10 2.82
281 282 7.411480 CGTCGAGTCATTTGTACATAACATTGT 60.411 37.037 0.00 0.00 38.10 2.71
282 283 8.865978 GTCGAGTCATTTGTACATAACATTGTA 58.134 33.333 0.00 0.00 38.10 2.41
283 284 9.425577 TCGAGTCATTTGTACATAACATTGTAA 57.574 29.630 0.00 0.00 38.10 2.41
284 285 9.472995 CGAGTCATTTGTACATAACATTGTAAC 57.527 33.333 0.00 0.00 38.10 2.50
293 294 8.233868 TGTACATAACATTGTAACATCAAGTGC 58.766 33.333 0.00 0.00 34.05 4.40
294 295 6.314018 ACATAACATTGTAACATCAAGTGCG 58.686 36.000 0.00 0.00 0.00 5.34
295 296 6.148645 ACATAACATTGTAACATCAAGTGCGA 59.851 34.615 0.00 0.00 0.00 5.10
296 297 5.431420 AACATTGTAACATCAAGTGCGAA 57.569 34.783 0.00 0.00 0.00 4.70
297 298 5.034554 ACATTGTAACATCAAGTGCGAAG 57.965 39.130 0.00 0.00 0.00 3.79
298 299 4.754618 ACATTGTAACATCAAGTGCGAAGA 59.245 37.500 0.00 0.00 0.00 2.87
299 300 4.990543 TTGTAACATCAAGTGCGAAGAG 57.009 40.909 0.00 0.00 0.00 2.85
300 301 3.990092 TGTAACATCAAGTGCGAAGAGT 58.010 40.909 0.00 0.00 0.00 3.24
301 302 4.377021 TGTAACATCAAGTGCGAAGAGTT 58.623 39.130 0.00 0.00 0.00 3.01
302 303 4.814234 TGTAACATCAAGTGCGAAGAGTTT 59.186 37.500 0.00 0.00 0.00 2.66
303 304 4.474226 AACATCAAGTGCGAAGAGTTTC 57.526 40.909 0.00 0.00 0.00 2.78
304 305 3.733337 ACATCAAGTGCGAAGAGTTTCT 58.267 40.909 0.00 0.00 0.00 2.52
305 306 4.883083 ACATCAAGTGCGAAGAGTTTCTA 58.117 39.130 0.00 0.00 0.00 2.10
306 307 4.686554 ACATCAAGTGCGAAGAGTTTCTAC 59.313 41.667 0.00 0.00 0.00 2.59
307 308 4.316205 TCAAGTGCGAAGAGTTTCTACA 57.684 40.909 0.00 0.00 0.00 2.74
308 309 4.883083 TCAAGTGCGAAGAGTTTCTACAT 58.117 39.130 0.00 0.00 0.00 2.29
309 310 5.297547 TCAAGTGCGAAGAGTTTCTACATT 58.702 37.500 0.00 0.00 0.00 2.71
310 311 5.758296 TCAAGTGCGAAGAGTTTCTACATTT 59.242 36.000 0.00 0.00 0.00 2.32
311 312 6.260050 TCAAGTGCGAAGAGTTTCTACATTTT 59.740 34.615 0.00 0.00 0.00 1.82
312 313 6.229561 AGTGCGAAGAGTTTCTACATTTTC 57.770 37.500 0.00 0.00 0.00 2.29
313 314 5.179555 AGTGCGAAGAGTTTCTACATTTTCC 59.820 40.000 0.00 0.00 0.00 3.13
314 315 5.179555 GTGCGAAGAGTTTCTACATTTTCCT 59.820 40.000 0.00 0.00 0.00 3.36
315 316 5.763204 TGCGAAGAGTTTCTACATTTTCCTT 59.237 36.000 0.00 0.00 0.00 3.36
316 317 6.262273 TGCGAAGAGTTTCTACATTTTCCTTT 59.738 34.615 0.00 0.00 0.00 3.11
317 318 7.139392 GCGAAGAGTTTCTACATTTTCCTTTT 58.861 34.615 0.00 0.00 0.00 2.27
318 319 8.287503 GCGAAGAGTTTCTACATTTTCCTTTTA 58.712 33.333 0.00 0.00 0.00 1.52
342 343 7.971004 ATAATATATGATACGCACACTCGTG 57.029 36.000 0.00 0.00 46.56 4.35
351 352 3.010088 CACACTCGTGCGTATTCGA 57.990 52.632 0.00 0.00 36.06 3.71
383 384 9.520515 AAAAACTAATAGATGTGGAGAATGTGT 57.479 29.630 0.00 0.00 0.00 3.72
384 385 8.723942 AAACTAATAGATGTGGAGAATGTGTC 57.276 34.615 0.00 0.00 0.00 3.67
385 386 7.423844 ACTAATAGATGTGGAGAATGTGTCA 57.576 36.000 0.00 0.00 0.00 3.58
386 387 7.495901 ACTAATAGATGTGGAGAATGTGTCAG 58.504 38.462 0.00 0.00 0.00 3.51
387 388 5.946942 ATAGATGTGGAGAATGTGTCAGT 57.053 39.130 0.00 0.00 0.00 3.41
388 389 4.630644 AGATGTGGAGAATGTGTCAGTT 57.369 40.909 0.00 0.00 0.00 3.16
389 390 4.978099 AGATGTGGAGAATGTGTCAGTTT 58.022 39.130 0.00 0.00 0.00 2.66
390 391 5.380043 AGATGTGGAGAATGTGTCAGTTTT 58.620 37.500 0.00 0.00 0.00 2.43
391 392 5.471456 AGATGTGGAGAATGTGTCAGTTTTC 59.529 40.000 0.00 0.00 0.00 2.29
392 393 3.882888 TGTGGAGAATGTGTCAGTTTTCC 59.117 43.478 2.16 2.16 0.00 3.13
393 394 4.137543 GTGGAGAATGTGTCAGTTTTCCT 58.862 43.478 8.22 0.00 0.00 3.36
394 395 5.163248 TGTGGAGAATGTGTCAGTTTTCCTA 60.163 40.000 8.22 0.00 0.00 2.94
395 396 5.179555 GTGGAGAATGTGTCAGTTTTCCTAC 59.820 44.000 8.22 3.56 0.00 3.18
396 397 4.389077 GGAGAATGTGTCAGTTTTCCTACG 59.611 45.833 1.97 0.00 0.00 3.51
397 398 5.209818 AGAATGTGTCAGTTTTCCTACGA 57.790 39.130 0.00 0.00 0.00 3.43
398 399 4.989168 AGAATGTGTCAGTTTTCCTACGAC 59.011 41.667 0.00 0.00 0.00 4.34
399 400 4.602340 ATGTGTCAGTTTTCCTACGACT 57.398 40.909 0.00 0.00 0.00 4.18
400 401 3.713288 TGTGTCAGTTTTCCTACGACTG 58.287 45.455 0.00 0.00 41.57 3.51
401 402 3.057734 GTGTCAGTTTTCCTACGACTGG 58.942 50.000 0.00 0.00 40.80 4.00
402 403 2.960384 TGTCAGTTTTCCTACGACTGGA 59.040 45.455 0.00 0.00 40.80 3.86
403 404 3.385433 TGTCAGTTTTCCTACGACTGGAA 59.615 43.478 0.00 0.00 40.80 3.53
404 405 3.988517 GTCAGTTTTCCTACGACTGGAAG 59.011 47.826 0.00 0.00 43.48 3.46
405 406 2.737252 CAGTTTTCCTACGACTGGAAGC 59.263 50.000 0.00 0.00 43.48 3.86
406 407 2.367567 AGTTTTCCTACGACTGGAAGCA 59.632 45.455 0.00 0.00 43.48 3.91
407 408 2.737252 GTTTTCCTACGACTGGAAGCAG 59.263 50.000 0.00 0.00 43.48 4.24
408 409 1.629043 TTCCTACGACTGGAAGCAGT 58.371 50.000 0.00 0.00 38.53 4.40
409 410 0.888619 TCCTACGACTGGAAGCAGTG 59.111 55.000 0.00 0.00 37.60 3.66
410 411 0.888619 CCTACGACTGGAAGCAGTGA 59.111 55.000 0.00 0.00 37.60 3.41
411 412 1.478510 CCTACGACTGGAAGCAGTGAT 59.521 52.381 0.00 0.00 37.60 3.06
412 413 2.480416 CCTACGACTGGAAGCAGTGATC 60.480 54.545 0.00 0.00 37.60 2.92
413 414 0.969149 ACGACTGGAAGCAGTGATCA 59.031 50.000 0.00 0.00 37.60 2.92
414 415 1.067283 ACGACTGGAAGCAGTGATCAG 60.067 52.381 0.00 0.00 37.60 2.90
415 416 1.738365 CGACTGGAAGCAGTGATCAGG 60.738 57.143 0.00 0.00 37.60 3.86
416 417 1.552337 GACTGGAAGCAGTGATCAGGA 59.448 52.381 0.00 0.00 37.60 3.86
417 418 1.980765 ACTGGAAGCAGTGATCAGGAA 59.019 47.619 0.00 0.00 37.60 3.36
418 419 2.575279 ACTGGAAGCAGTGATCAGGAAT 59.425 45.455 0.00 0.00 37.60 3.01
419 420 3.204526 CTGGAAGCAGTGATCAGGAATC 58.795 50.000 0.00 0.00 34.72 2.52
420 421 2.842496 TGGAAGCAGTGATCAGGAATCT 59.158 45.455 0.00 0.00 35.24 2.40
421 422 4.033009 TGGAAGCAGTGATCAGGAATCTA 58.967 43.478 0.00 0.00 35.24 1.98
422 423 4.100653 TGGAAGCAGTGATCAGGAATCTAG 59.899 45.833 0.00 0.00 35.24 2.43
423 424 4.502950 GGAAGCAGTGATCAGGAATCTAGG 60.503 50.000 0.00 0.00 35.24 3.02
424 425 3.921104 AGCAGTGATCAGGAATCTAGGA 58.079 45.455 0.00 0.00 35.24 2.94
425 426 4.491675 AGCAGTGATCAGGAATCTAGGAT 58.508 43.478 0.00 0.00 35.24 3.24
426 427 4.527816 AGCAGTGATCAGGAATCTAGGATC 59.472 45.833 0.00 0.00 37.31 3.36
427 428 4.617995 GCAGTGATCAGGAATCTAGGATCG 60.618 50.000 0.00 0.00 39.14 3.69
428 429 3.509575 AGTGATCAGGAATCTAGGATCGC 59.490 47.826 0.00 8.91 43.87 4.58
429 430 2.828520 TGATCAGGAATCTAGGATCGCC 59.171 50.000 0.00 0.00 39.14 5.54
430 431 1.633774 TCAGGAATCTAGGATCGCCC 58.366 55.000 0.00 0.00 33.31 6.13
431 432 6.602179 TGATCAGGAATCTAGGATCGCCCT 62.602 50.000 0.00 1.88 39.14 5.19
432 433 1.548269 CAGGAATCTAGGATCGCCCTC 59.452 57.143 0.00 0.00 43.31 4.30
433 434 1.148027 AGGAATCTAGGATCGCCCTCA 59.852 52.381 0.00 0.00 43.31 3.86
434 435 1.548269 GGAATCTAGGATCGCCCTCAG 59.452 57.143 0.00 0.00 43.31 3.35
435 436 1.548269 GAATCTAGGATCGCCCTCAGG 59.452 57.143 0.00 0.00 43.31 3.86
447 448 2.425143 CCCTCAGGCAAAGATAAGCA 57.575 50.000 0.00 0.00 0.00 3.91
448 449 2.295885 CCCTCAGGCAAAGATAAGCAG 58.704 52.381 0.00 0.00 0.00 4.24
449 450 2.092753 CCCTCAGGCAAAGATAAGCAGA 60.093 50.000 0.00 0.00 0.00 4.26
450 451 3.434739 CCCTCAGGCAAAGATAAGCAGAT 60.435 47.826 0.00 0.00 0.00 2.90
451 452 3.814283 CCTCAGGCAAAGATAAGCAGATC 59.186 47.826 0.00 0.00 0.00 2.75
452 453 3.461061 TCAGGCAAAGATAAGCAGATCG 58.539 45.455 0.00 0.00 0.00 3.69
453 454 3.132824 TCAGGCAAAGATAAGCAGATCGA 59.867 43.478 0.00 0.00 0.00 3.59
454 455 4.063689 CAGGCAAAGATAAGCAGATCGAT 58.936 43.478 0.00 0.00 0.00 3.59
455 456 4.152045 CAGGCAAAGATAAGCAGATCGATC 59.848 45.833 17.91 17.91 0.00 3.69
456 457 3.122613 GGCAAAGATAAGCAGATCGATCG 59.877 47.826 19.33 9.36 0.00 3.69
457 458 3.738282 GCAAAGATAAGCAGATCGATCGT 59.262 43.478 19.33 9.08 0.00 3.73
458 459 4.375807 GCAAAGATAAGCAGATCGATCGTG 60.376 45.833 19.33 17.40 0.00 4.35
459 460 4.837896 AAGATAAGCAGATCGATCGTGA 57.162 40.909 19.33 5.50 0.00 4.35
460 461 5.384063 AAGATAAGCAGATCGATCGTGAT 57.616 39.130 19.33 13.53 0.00 3.06
461 462 4.980590 AGATAAGCAGATCGATCGTGATC 58.019 43.478 19.33 16.79 44.13 2.92
470 471 2.199152 GATCGTGATCGTGTGCTCG 58.801 57.895 0.00 0.00 38.33 5.03
471 472 1.202973 GATCGTGATCGTGTGCTCGG 61.203 60.000 0.00 0.00 38.33 4.63
472 473 1.934220 ATCGTGATCGTGTGCTCGGT 61.934 55.000 0.00 0.00 38.33 4.69
473 474 2.436539 CGTGATCGTGTGCTCGGTG 61.437 63.158 0.00 0.00 0.00 4.94
474 475 2.432456 TGATCGTGTGCTCGGTGC 60.432 61.111 0.00 0.00 43.25 5.01
475 476 2.125912 GATCGTGTGCTCGGTGCT 60.126 61.111 3.53 0.00 43.37 4.40
476 477 2.125912 ATCGTGTGCTCGGTGCTC 60.126 61.111 3.53 0.50 43.37 4.26
477 478 3.649277 ATCGTGTGCTCGGTGCTCC 62.649 63.158 3.53 0.00 43.37 4.70
478 479 4.363990 CGTGTGCTCGGTGCTCCT 62.364 66.667 2.85 0.00 43.37 3.69
479 480 2.031163 GTGTGCTCGGTGCTCCTT 59.969 61.111 2.85 0.00 43.37 3.36
480 481 1.598130 GTGTGCTCGGTGCTCCTTT 60.598 57.895 2.85 0.00 43.37 3.11
481 482 1.301716 TGTGCTCGGTGCTCCTTTC 60.302 57.895 2.85 0.00 43.37 2.62
482 483 1.301716 GTGCTCGGTGCTCCTTTCA 60.302 57.895 2.85 0.00 43.37 2.69
483 484 0.884704 GTGCTCGGTGCTCCTTTCAA 60.885 55.000 2.85 0.00 43.37 2.69
484 485 0.179032 TGCTCGGTGCTCCTTTCAAA 60.179 50.000 2.85 0.00 43.37 2.69
485 486 0.951558 GCTCGGTGCTCCTTTCAAAA 59.048 50.000 2.85 0.00 38.95 2.44
486 487 1.336755 GCTCGGTGCTCCTTTCAAAAA 59.663 47.619 2.85 0.00 38.95 1.94
487 488 2.605580 GCTCGGTGCTCCTTTCAAAAAG 60.606 50.000 2.85 0.00 38.95 2.27
488 489 2.878406 CTCGGTGCTCCTTTCAAAAAGA 59.122 45.455 2.85 0.00 0.00 2.52
489 490 3.283751 TCGGTGCTCCTTTCAAAAAGAA 58.716 40.909 2.85 0.00 0.00 2.52
490 491 3.697045 TCGGTGCTCCTTTCAAAAAGAAA 59.303 39.130 2.85 0.00 43.71 2.52
491 492 4.158764 TCGGTGCTCCTTTCAAAAAGAAAA 59.841 37.500 2.85 0.00 45.11 2.29
492 493 4.867608 CGGTGCTCCTTTCAAAAAGAAAAA 59.132 37.500 2.85 0.00 45.11 1.94
571 572 2.972505 CCTGTTGGCGACGCACTT 60.973 61.111 23.09 0.00 0.00 3.16
573 574 3.862063 CTGTTGGCGACGCACTTGC 62.862 63.158 23.09 3.95 37.78 4.01
596 597 3.045634 CCCCCTTTTCCTTTGTTTTCCT 58.954 45.455 0.00 0.00 0.00 3.36
660 673 2.756760 CCAATCTCCACCCTGACAAATG 59.243 50.000 0.00 0.00 0.00 2.32
661 674 2.134789 ATCTCCACCCTGACAAATGC 57.865 50.000 0.00 0.00 0.00 3.56
662 675 0.321564 TCTCCACCCTGACAAATGCG 60.322 55.000 0.00 0.00 0.00 4.73
663 676 0.321564 CTCCACCCTGACAAATGCGA 60.322 55.000 0.00 0.00 0.00 5.10
664 677 0.109532 TCCACCCTGACAAATGCGAA 59.890 50.000 0.00 0.00 0.00 4.70
665 678 0.523072 CCACCCTGACAAATGCGAAG 59.477 55.000 0.00 0.00 0.00 3.79
732 745 4.168883 GTCCCTATATAAGCAAGTCCCCT 58.831 47.826 0.00 0.00 0.00 4.79
855 874 2.959030 TCCTGTCAGCTCGTAGCATAAT 59.041 45.455 9.09 0.00 45.56 1.28
878 897 3.006430 TCCAACAGAATAAGTGACGCAGA 59.994 43.478 0.00 0.00 0.00 4.26
879 898 3.745975 CCAACAGAATAAGTGACGCAGAA 59.254 43.478 0.00 0.00 0.00 3.02
880 899 4.143030 CCAACAGAATAAGTGACGCAGAAG 60.143 45.833 0.00 0.00 0.00 2.85
881 900 2.996621 ACAGAATAAGTGACGCAGAAGC 59.003 45.455 0.00 0.00 37.42 3.86
918 937 7.201145 CAGCGGTCAACCTATATATACCATAC 58.799 42.308 0.00 0.00 0.00 2.39
1086 1106 1.959085 GGTGACGGTGGAGTACGAA 59.041 57.895 0.00 0.00 0.00 3.85
1191 1211 1.819632 GTGGAAGATTGGCGCCGAT 60.820 57.895 29.68 29.68 0.00 4.18
1202 1222 2.728180 CGCCGATGATCCGAGGAA 59.272 61.111 0.00 0.00 0.00 3.36
1233 1253 1.961277 CCTCAAAGTCGGCGTTGCT 60.961 57.895 10.98 0.79 34.76 3.91
1269 1289 2.458620 GTCTTCTACTACACCAGGCCT 58.541 52.381 0.00 0.00 0.00 5.19
1379 1402 6.663944 AGTAGAATTACAAAACGGATCAGC 57.336 37.500 0.00 0.00 31.96 4.26
1380 1403 6.407202 AGTAGAATTACAAAACGGATCAGCT 58.593 36.000 0.00 0.00 31.96 4.24
1486 1520 1.671845 GCGTGTACAAAGGGTTCAACA 59.328 47.619 0.00 0.00 0.00 3.33
1629 1666 1.076332 ATAAACCTTCGTGCGCACTC 58.924 50.000 35.27 13.59 0.00 3.51
1635 1672 0.713883 CTTCGTGCGCACTCGTAAAT 59.286 50.000 35.27 0.00 38.14 1.40
1656 1697 2.949106 CCACGCTTTCTGCCACAG 59.051 61.111 0.00 0.00 38.78 3.66
1843 1885 1.153369 GCAGCGGCTTCTCACCATA 60.153 57.895 0.00 0.00 36.96 2.74
1852 1894 1.688735 CTTCTCACCATAGCCATCGGA 59.311 52.381 0.00 0.00 0.00 4.55
1992 2034 1.726533 GACTACTTCGCCGAGGAGGG 61.727 65.000 2.27 0.00 41.48 4.30
2001 2043 4.560856 CGAGGAGGGCGCGAAGAG 62.561 72.222 12.10 0.00 0.00 2.85
2002 2044 3.453679 GAGGAGGGCGCGAAGAGT 61.454 66.667 12.10 0.00 0.00 3.24
2134 2191 1.684734 CCCCTACGCCCAGTACACT 60.685 63.158 0.00 0.00 0.00 3.55
2455 2512 2.437359 GCCATGCCGCTCTTCACT 60.437 61.111 0.00 0.00 0.00 3.41
2568 2625 2.028045 CGGACGATGATGACGACAAAAG 59.972 50.000 0.00 0.00 34.70 2.27
2655 2712 6.426633 CCTGAAGAAAACAAAACAACCAAACT 59.573 34.615 0.00 0.00 0.00 2.66
2662 2719 7.793927 AAACAAAACAACCAAACTTTCTGAA 57.206 28.000 0.00 0.00 0.00 3.02
2671 2728 6.844097 ACCAAACTTTCTGAACAGGTTTAA 57.156 33.333 11.96 0.00 0.00 1.52
2690 2750 6.128742 GGTTTAAAACGAGCGTCTATGAAAGA 60.129 38.462 0.00 0.00 0.00 2.52
2715 2775 0.747255 GGAGCAGCTGGACTTATCGA 59.253 55.000 17.12 0.00 0.00 3.59
2718 2778 1.827969 AGCAGCTGGACTTATCGAACT 59.172 47.619 17.12 0.00 0.00 3.01
2721 2781 1.482593 AGCTGGACTTATCGAACTGGG 59.517 52.381 0.00 0.00 0.00 4.45
2728 2796 2.358267 ACTTATCGAACTGGGCGAGTAG 59.642 50.000 1.54 0.56 41.49 2.57
2766 2834 7.279981 CAGATTTAACCTGACAATACCATCGAA 59.720 37.037 0.00 0.00 33.65 3.71
2771 2839 6.235231 ACCTGACAATACCATCGAATTAGT 57.765 37.500 0.00 0.00 0.00 2.24
2851 2920 7.551035 AGAAGATGATGCATAAACTTCTGAC 57.449 36.000 27.48 8.53 41.20 3.51
2895 2964 2.169832 AACCGGCTTATGATCATCGG 57.830 50.000 24.41 24.41 42.69 4.18
2918 2987 1.620819 AGTAGACCGGCATCCATCATC 59.379 52.381 0.00 0.00 0.00 2.92
2984 3053 7.440523 ACTGATGAAATGACACTAGTTTTCC 57.559 36.000 12.88 2.73 0.00 3.13
3064 3133 2.220133 CACTTGTACAAACCGACGGAAG 59.780 50.000 23.38 13.94 0.00 3.46
3090 3160 2.095364 GGCTGAGCACAAAGTGAATCAG 60.095 50.000 19.73 19.73 44.33 2.90
3108 3178 1.679977 GGCCATGAGCTTTGCAGGA 60.680 57.895 0.00 0.00 43.05 3.86
3371 3445 3.726517 GCGTGATGCGGTGCAACT 61.727 61.111 0.00 0.00 43.62 3.16
3381 3455 0.240945 CGGTGCAACTCAAACCCATC 59.759 55.000 0.00 0.00 36.74 3.51
3441 3517 1.153549 CTGCTGCCGAGGTTAGGAC 60.154 63.158 0.00 0.00 0.00 3.85
3445 3521 2.101770 GCCGAGGTTAGGACGACG 59.898 66.667 0.00 0.00 0.00 5.12
3455 3531 4.077184 GGACGACGGTGGCCATGA 62.077 66.667 9.72 0.00 0.00 3.07
3456 3532 2.813908 GACGACGGTGGCCATGAC 60.814 66.667 9.72 4.38 0.00 3.06
3459 4402 2.662596 GACGGTGGCCATGACTGA 59.337 61.111 9.72 0.00 0.00 3.41
3500 4443 0.839946 AGTGGAGGACAAACACAGCT 59.160 50.000 0.00 0.00 37.58 4.24
3528 4471 1.218196 GGTACTGGGAGATGGGAGAGA 59.782 57.143 0.00 0.00 0.00 3.10
3529 4472 2.359355 GGTACTGGGAGATGGGAGAGAA 60.359 54.545 0.00 0.00 0.00 2.87
3577 4520 9.839167 ATGACGCTTCATGCATATCTGAAATGC 62.839 40.741 4.66 0.51 41.23 3.56
3632 4576 2.222027 TCATCTTCGAGCTGAGCGATA 58.778 47.619 0.00 0.00 37.64 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.653287 CACTATGTTTCTTTATGTGGAGTAGAA 57.347 33.333 0.00 0.00 0.00 2.10
9 10 7.764443 GCACTATGTTTCTTTATGTGGAGTAGA 59.236 37.037 0.00 0.00 0.00 2.59
10 11 7.766278 AGCACTATGTTTCTTTATGTGGAGTAG 59.234 37.037 0.00 0.00 0.00 2.57
11 12 7.620880 AGCACTATGTTTCTTTATGTGGAGTA 58.379 34.615 0.00 0.00 0.00 2.59
12 13 6.476378 AGCACTATGTTTCTTTATGTGGAGT 58.524 36.000 0.00 0.00 0.00 3.85
13 14 6.992063 AGCACTATGTTTCTTTATGTGGAG 57.008 37.500 0.00 0.00 0.00 3.86
14 15 6.939730 TGAAGCACTATGTTTCTTTATGTGGA 59.060 34.615 6.90 0.00 38.24 4.02
15 16 7.023575 GTGAAGCACTATGTTTCTTTATGTGG 58.976 38.462 6.90 0.00 38.24 4.17
16 17 7.535258 GTGTGAAGCACTATGTTTCTTTATGTG 59.465 37.037 6.90 0.00 44.41 3.21
17 18 7.584987 GTGTGAAGCACTATGTTTCTTTATGT 58.415 34.615 6.90 0.00 44.41 2.29
31 32 9.279108 CAACTTCCATTAGTTGTGTGAAGCACT 62.279 40.741 8.04 0.00 46.27 4.40
32 33 7.219912 CAACTTCCATTAGTTGTGTGAAGCAC 61.220 42.308 8.04 0.00 46.27 4.40
33 34 4.460263 ACTTCCATTAGTTGTGTGAAGCA 58.540 39.130 0.00 0.00 0.00 3.91
34 35 5.215160 CAACTTCCATTAGTTGTGTGAAGC 58.785 41.667 8.04 0.00 46.27 3.86
43 44 4.578928 GTGTGTCCACAACTTCCATTAGTT 59.421 41.667 0.93 0.00 43.77 2.24
44 45 4.134563 GTGTGTCCACAACTTCCATTAGT 58.865 43.478 0.93 0.00 43.77 2.24
45 46 3.502211 GGTGTGTCCACAACTTCCATTAG 59.498 47.826 8.19 0.00 45.22 1.73
46 47 3.482436 GGTGTGTCCACAACTTCCATTA 58.518 45.455 8.19 0.00 45.22 1.90
47 48 2.306847 GGTGTGTCCACAACTTCCATT 58.693 47.619 8.19 0.00 45.22 3.16
48 49 1.813862 CGGTGTGTCCACAACTTCCAT 60.814 52.381 13.16 0.00 46.41 3.41
49 50 0.462937 CGGTGTGTCCACAACTTCCA 60.463 55.000 13.16 0.00 46.41 3.53
50 51 0.463116 ACGGTGTGTCCACAACTTCC 60.463 55.000 13.16 4.62 46.41 3.46
51 52 2.228138 TACGGTGTGTCCACAACTTC 57.772 50.000 13.16 0.00 46.41 3.01
52 53 2.695127 TTACGGTGTGTCCACAACTT 57.305 45.000 13.16 6.78 46.41 2.66
53 54 2.489971 CATTACGGTGTGTCCACAACT 58.510 47.619 13.16 3.84 46.41 3.16
54 55 1.069500 GCATTACGGTGTGTCCACAAC 60.069 52.381 5.38 5.38 45.20 3.32
55 56 1.231221 GCATTACGGTGTGTCCACAA 58.769 50.000 0.93 0.00 43.77 3.33
56 57 0.106894 TGCATTACGGTGTGTCCACA 59.893 50.000 0.00 0.00 43.71 4.17
57 58 0.796312 CTGCATTACGGTGTGTCCAC 59.204 55.000 0.00 0.00 41.06 4.02
58 59 0.394938 ACTGCATTACGGTGTGTCCA 59.605 50.000 0.00 0.00 36.16 4.02
59 60 3.226884 ACTGCATTACGGTGTGTCC 57.773 52.632 0.00 0.00 36.16 4.02
65 66 2.151202 CAAAGACCACTGCATTACGGT 58.849 47.619 0.00 0.00 38.94 4.83
66 67 2.159627 GTCAAAGACCACTGCATTACGG 59.840 50.000 0.00 0.00 0.00 4.02
67 68 2.159841 CGTCAAAGACCACTGCATTACG 60.160 50.000 0.00 0.00 0.00 3.18
68 69 2.159627 CCGTCAAAGACCACTGCATTAC 59.840 50.000 0.00 0.00 0.00 1.89
69 70 2.037902 TCCGTCAAAGACCACTGCATTA 59.962 45.455 0.00 0.00 0.00 1.90
70 71 1.202758 TCCGTCAAAGACCACTGCATT 60.203 47.619 0.00 0.00 0.00 3.56
71 72 0.396435 TCCGTCAAAGACCACTGCAT 59.604 50.000 0.00 0.00 0.00 3.96
72 73 0.249868 CTCCGTCAAAGACCACTGCA 60.250 55.000 0.00 0.00 0.00 4.41
73 74 1.569479 GCTCCGTCAAAGACCACTGC 61.569 60.000 0.00 0.00 0.00 4.40
74 75 1.284982 CGCTCCGTCAAAGACCACTG 61.285 60.000 0.00 0.00 0.00 3.66
75 76 1.006102 CGCTCCGTCAAAGACCACT 60.006 57.895 0.00 0.00 0.00 4.00
76 77 2.027625 CCGCTCCGTCAAAGACCAC 61.028 63.158 0.00 0.00 0.00 4.16
77 78 2.342279 CCGCTCCGTCAAAGACCA 59.658 61.111 0.00 0.00 0.00 4.02
78 79 3.119096 GCCGCTCCGTCAAAGACC 61.119 66.667 0.00 0.00 0.00 3.85
79 80 3.479269 CGCCGCTCCGTCAAAGAC 61.479 66.667 0.00 0.00 0.00 3.01
105 106 2.259818 CTCTTGAGCACCGCGAGT 59.740 61.111 8.23 0.00 0.00 4.18
106 107 3.184683 GCTCTTGAGCACCGCGAG 61.185 66.667 16.71 0.00 34.41 5.03
107 108 3.989787 TGCTCTTGAGCACCGCGA 61.990 61.111 19.87 0.00 40.23 5.87
114 115 1.202463 TCGCTTCCTATGCTCTTGAGC 60.202 52.381 15.01 15.01 0.00 4.26
115 116 2.545532 CCTCGCTTCCTATGCTCTTGAG 60.546 54.545 0.00 0.00 0.00 3.02
116 117 1.410517 CCTCGCTTCCTATGCTCTTGA 59.589 52.381 0.00 0.00 0.00 3.02
117 118 1.863267 CCTCGCTTCCTATGCTCTTG 58.137 55.000 0.00 0.00 0.00 3.02
118 119 0.105778 GCCTCGCTTCCTATGCTCTT 59.894 55.000 0.00 0.00 0.00 2.85
119 120 1.745264 GCCTCGCTTCCTATGCTCT 59.255 57.895 0.00 0.00 0.00 4.09
120 121 1.301322 GGCCTCGCTTCCTATGCTC 60.301 63.158 0.00 0.00 0.00 4.26
121 122 2.037620 CTGGCCTCGCTTCCTATGCT 62.038 60.000 3.32 0.00 0.00 3.79
122 123 1.596477 CTGGCCTCGCTTCCTATGC 60.596 63.158 3.32 0.00 0.00 3.14
123 124 1.070445 CCTGGCCTCGCTTCCTATG 59.930 63.158 3.32 0.00 0.00 2.23
124 125 2.143419 CCCTGGCCTCGCTTCCTAT 61.143 63.158 3.32 0.00 0.00 2.57
125 126 2.764128 CCCTGGCCTCGCTTCCTA 60.764 66.667 3.32 0.00 0.00 2.94
128 129 4.416738 AAGCCCTGGCCTCGCTTC 62.417 66.667 15.92 0.00 38.44 3.86
129 130 4.729918 CAAGCCCTGGCCTCGCTT 62.730 66.667 15.92 15.92 43.45 4.68
132 133 3.984193 CTTCCAAGCCCTGGCCTCG 62.984 68.421 3.32 0.00 45.98 4.63
133 134 2.044551 CTTCCAAGCCCTGGCCTC 60.045 66.667 3.32 0.00 45.98 4.70
134 135 4.372999 GCTTCCAAGCCCTGGCCT 62.373 66.667 3.32 0.00 45.98 5.19
143 144 0.615331 TAGTCCTGCCTGCTTCCAAG 59.385 55.000 0.00 0.00 0.00 3.61
144 145 0.324943 GTAGTCCTGCCTGCTTCCAA 59.675 55.000 0.00 0.00 0.00 3.53
145 146 0.545309 AGTAGTCCTGCCTGCTTCCA 60.545 55.000 0.00 0.00 0.00 3.53
146 147 0.107945 CAGTAGTCCTGCCTGCTTCC 60.108 60.000 0.00 0.00 33.59 3.46
147 148 0.610687 ACAGTAGTCCTGCCTGCTTC 59.389 55.000 0.00 0.00 45.68 3.86
148 149 0.322975 CACAGTAGTCCTGCCTGCTT 59.677 55.000 0.00 0.00 45.68 3.91
149 150 0.542938 TCACAGTAGTCCTGCCTGCT 60.543 55.000 0.00 0.00 45.68 4.24
150 151 0.108424 CTCACAGTAGTCCTGCCTGC 60.108 60.000 0.00 0.00 45.68 4.85
151 152 0.534412 CCTCACAGTAGTCCTGCCTG 59.466 60.000 0.00 0.00 45.68 4.85
152 153 0.616111 CCCTCACAGTAGTCCTGCCT 60.616 60.000 0.00 0.00 45.68 4.75
153 154 1.617947 CCCCTCACAGTAGTCCTGCC 61.618 65.000 0.00 0.00 45.68 4.85
154 155 0.614979 TCCCCTCACAGTAGTCCTGC 60.615 60.000 0.00 0.00 45.68 4.85
156 157 1.433592 ACTTCCCCTCACAGTAGTCCT 59.566 52.381 0.00 0.00 0.00 3.85
157 158 1.826096 GACTTCCCCTCACAGTAGTCC 59.174 57.143 0.00 0.00 0.00 3.85
158 159 1.473278 CGACTTCCCCTCACAGTAGTC 59.527 57.143 0.00 0.00 0.00 2.59
159 160 1.075050 TCGACTTCCCCTCACAGTAGT 59.925 52.381 0.00 0.00 0.00 2.73
160 161 1.746220 CTCGACTTCCCCTCACAGTAG 59.254 57.143 0.00 0.00 0.00 2.57
161 162 1.353358 TCTCGACTTCCCCTCACAGTA 59.647 52.381 0.00 0.00 0.00 2.74
162 163 0.112606 TCTCGACTTCCCCTCACAGT 59.887 55.000 0.00 0.00 0.00 3.55
163 164 0.528470 GTCTCGACTTCCCCTCACAG 59.472 60.000 0.00 0.00 0.00 3.66
164 165 1.241990 CGTCTCGACTTCCCCTCACA 61.242 60.000 0.00 0.00 0.00 3.58
165 166 1.242665 ACGTCTCGACTTCCCCTCAC 61.243 60.000 0.00 0.00 0.00 3.51
166 167 0.538977 AACGTCTCGACTTCCCCTCA 60.539 55.000 0.00 0.00 0.00 3.86
167 168 0.170784 GAACGTCTCGACTTCCCCTC 59.829 60.000 0.00 0.00 0.00 4.30
168 169 0.251253 AGAACGTCTCGACTTCCCCT 60.251 55.000 0.00 0.00 0.00 4.79
169 170 0.602060 AAGAACGTCTCGACTTCCCC 59.398 55.000 0.00 0.00 0.00 4.81
170 171 1.728502 CGAAGAACGTCTCGACTTCCC 60.729 57.143 8.50 5.91 38.86 3.97
171 172 1.604396 CGAAGAACGTCTCGACTTCC 58.396 55.000 8.50 8.79 38.86 3.46
183 184 0.598065 ATGCAAGGCCAACGAAGAAC 59.402 50.000 5.01 0.00 0.00 3.01
184 185 1.000385 CAATGCAAGGCCAACGAAGAA 60.000 47.619 5.01 0.00 0.00 2.52
185 186 0.597568 CAATGCAAGGCCAACGAAGA 59.402 50.000 5.01 0.00 0.00 2.87
186 187 0.314935 ACAATGCAAGGCCAACGAAG 59.685 50.000 5.01 0.00 0.00 3.79
187 188 0.031857 CACAATGCAAGGCCAACGAA 59.968 50.000 5.01 0.00 0.00 3.85
188 189 1.659233 CACAATGCAAGGCCAACGA 59.341 52.632 5.01 0.00 0.00 3.85
189 190 1.373246 CCACAATGCAAGGCCAACG 60.373 57.895 5.01 0.00 0.00 4.10
190 191 1.004679 CCCACAATGCAAGGCCAAC 60.005 57.895 5.01 0.00 0.00 3.77
191 192 1.152376 TCCCACAATGCAAGGCCAA 60.152 52.632 5.01 0.00 0.00 4.52
192 193 1.607178 CTCCCACAATGCAAGGCCA 60.607 57.895 5.01 0.00 0.00 5.36
193 194 1.304381 TCTCCCACAATGCAAGGCC 60.304 57.895 0.00 0.00 0.00 5.19
194 195 0.610232 ACTCTCCCACAATGCAAGGC 60.610 55.000 0.00 0.00 0.00 4.35
195 196 2.636830 CTACTCTCCCACAATGCAAGG 58.363 52.381 0.00 0.00 0.00 3.61
196 197 2.012673 GCTACTCTCCCACAATGCAAG 58.987 52.381 0.00 0.00 0.00 4.01
197 198 1.675714 CGCTACTCTCCCACAATGCAA 60.676 52.381 0.00 0.00 0.00 4.08
198 199 0.108186 CGCTACTCTCCCACAATGCA 60.108 55.000 0.00 0.00 0.00 3.96
199 200 0.175760 TCGCTACTCTCCCACAATGC 59.824 55.000 0.00 0.00 0.00 3.56
200 201 1.478510 ACTCGCTACTCTCCCACAATG 59.521 52.381 0.00 0.00 0.00 2.82
201 202 1.853963 ACTCGCTACTCTCCCACAAT 58.146 50.000 0.00 0.00 0.00 2.71
202 203 2.290768 ACTACTCGCTACTCTCCCACAA 60.291 50.000 0.00 0.00 0.00 3.33
203 204 1.281287 ACTACTCGCTACTCTCCCACA 59.719 52.381 0.00 0.00 0.00 4.17
204 205 1.941975 GACTACTCGCTACTCTCCCAC 59.058 57.143 0.00 0.00 0.00 4.61
205 206 1.134159 GGACTACTCGCTACTCTCCCA 60.134 57.143 0.00 0.00 0.00 4.37
206 207 1.141455 AGGACTACTCGCTACTCTCCC 59.859 57.143 0.00 0.00 0.00 4.30
207 208 2.486918 GAGGACTACTCGCTACTCTCC 58.513 57.143 0.00 0.00 36.29 3.71
217 218 5.353123 CCTATCTCGCTAATGAGGACTACTC 59.647 48.000 0.00 0.00 46.78 2.59
218 219 5.250200 CCTATCTCGCTAATGAGGACTACT 58.750 45.833 0.00 0.00 36.61 2.57
219 220 4.142556 GCCTATCTCGCTAATGAGGACTAC 60.143 50.000 0.00 0.00 36.61 2.73
220 221 4.011023 GCCTATCTCGCTAATGAGGACTA 58.989 47.826 0.00 0.00 36.61 2.59
221 222 2.823154 GCCTATCTCGCTAATGAGGACT 59.177 50.000 0.00 0.00 36.61 3.85
222 223 2.558795 TGCCTATCTCGCTAATGAGGAC 59.441 50.000 0.00 0.00 36.61 3.85
223 224 2.822561 CTGCCTATCTCGCTAATGAGGA 59.177 50.000 0.00 0.00 36.61 3.71
224 225 2.094286 CCTGCCTATCTCGCTAATGAGG 60.094 54.545 0.00 0.00 36.61 3.86
225 226 2.560542 ACCTGCCTATCTCGCTAATGAG 59.439 50.000 0.00 0.00 37.33 2.90
226 227 2.297315 CACCTGCCTATCTCGCTAATGA 59.703 50.000 0.00 0.00 0.00 2.57
227 228 2.611473 CCACCTGCCTATCTCGCTAATG 60.611 54.545 0.00 0.00 0.00 1.90
228 229 1.620819 CCACCTGCCTATCTCGCTAAT 59.379 52.381 0.00 0.00 0.00 1.73
229 230 1.040646 CCACCTGCCTATCTCGCTAA 58.959 55.000 0.00 0.00 0.00 3.09
230 231 0.827925 CCCACCTGCCTATCTCGCTA 60.828 60.000 0.00 0.00 0.00 4.26
231 232 2.136878 CCCACCTGCCTATCTCGCT 61.137 63.158 0.00 0.00 0.00 4.93
232 233 2.423446 CCCACCTGCCTATCTCGC 59.577 66.667 0.00 0.00 0.00 5.03
233 234 1.762460 ACCCCACCTGCCTATCTCG 60.762 63.158 0.00 0.00 0.00 4.04
234 235 0.691078 TCACCCCACCTGCCTATCTC 60.691 60.000 0.00 0.00 0.00 2.75
235 236 0.983378 GTCACCCCACCTGCCTATCT 60.983 60.000 0.00 0.00 0.00 1.98
236 237 1.527370 GTCACCCCACCTGCCTATC 59.473 63.158 0.00 0.00 0.00 2.08
237 238 2.001269 GGTCACCCCACCTGCCTAT 61.001 63.158 0.00 0.00 33.08 2.57
238 239 2.609610 GGTCACCCCACCTGCCTA 60.610 66.667 0.00 0.00 33.08 3.93
241 242 4.699522 GACGGTCACCCCACCTGC 62.700 72.222 2.62 0.00 33.77 4.85
242 243 4.373116 CGACGGTCACCCCACCTG 62.373 72.222 9.10 0.00 33.77 4.00
243 244 4.608774 TCGACGGTCACCCCACCT 62.609 66.667 9.10 0.00 33.77 4.00
244 245 4.065281 CTCGACGGTCACCCCACC 62.065 72.222 9.10 0.00 0.00 4.61
245 246 3.278592 GACTCGACGGTCACCCCAC 62.279 68.421 9.10 0.00 36.35 4.61
246 247 2.987547 GACTCGACGGTCACCCCA 60.988 66.667 9.10 0.00 36.35 4.96
247 248 1.885163 AATGACTCGACGGTCACCCC 61.885 60.000 17.55 0.00 46.93 4.95
248 249 0.037605 AAATGACTCGACGGTCACCC 60.038 55.000 17.55 0.00 46.93 4.61
249 250 1.068474 CAAATGACTCGACGGTCACC 58.932 55.000 17.55 0.00 46.93 4.02
250 251 1.779569 ACAAATGACTCGACGGTCAC 58.220 50.000 17.55 0.00 46.93 3.67
251 252 9.592940 TGTTATGTACAAATGACTCGACGGTCA 62.593 40.741 17.52 17.52 40.90 4.02
252 253 2.937591 TGTACAAATGACTCGACGGTC 58.062 47.619 0.00 8.87 36.81 4.79
253 254 3.587797 ATGTACAAATGACTCGACGGT 57.412 42.857 0.00 0.00 0.00 4.83
254 255 4.860352 TGTTATGTACAAATGACTCGACGG 59.140 41.667 0.00 0.00 32.64 4.79
255 256 6.569228 ATGTTATGTACAAATGACTCGACG 57.431 37.500 0.00 0.00 40.89 5.12
256 257 7.739295 ACAATGTTATGTACAAATGACTCGAC 58.261 34.615 0.00 0.00 40.89 4.20
257 258 7.899178 ACAATGTTATGTACAAATGACTCGA 57.101 32.000 0.00 0.00 40.89 4.04
258 259 9.472995 GTTACAATGTTATGTACAAATGACTCG 57.527 33.333 0.00 0.00 40.89 4.18
267 268 8.233868 GCACTTGATGTTACAATGTTATGTACA 58.766 33.333 0.00 0.00 41.97 2.90
268 269 7.425309 CGCACTTGATGTTACAATGTTATGTAC 59.575 37.037 0.00 0.00 35.60 2.90
269 270 7.332182 TCGCACTTGATGTTACAATGTTATGTA 59.668 33.333 0.00 0.00 34.75 2.29
270 271 6.148645 TCGCACTTGATGTTACAATGTTATGT 59.851 34.615 0.00 0.00 37.32 2.29
271 272 6.541969 TCGCACTTGATGTTACAATGTTATG 58.458 36.000 0.00 0.00 0.00 1.90
272 273 6.735678 TCGCACTTGATGTTACAATGTTAT 57.264 33.333 0.00 0.00 0.00 1.89
273 274 6.425417 TCTTCGCACTTGATGTTACAATGTTA 59.575 34.615 0.00 0.00 0.00 2.41
274 275 5.238432 TCTTCGCACTTGATGTTACAATGTT 59.762 36.000 0.00 0.00 0.00 2.71
275 276 4.754618 TCTTCGCACTTGATGTTACAATGT 59.245 37.500 0.00 0.00 0.00 2.71
276 277 5.106948 ACTCTTCGCACTTGATGTTACAATG 60.107 40.000 0.00 0.00 0.00 2.82
277 278 4.997395 ACTCTTCGCACTTGATGTTACAAT 59.003 37.500 0.00 0.00 0.00 2.71
278 279 4.377021 ACTCTTCGCACTTGATGTTACAA 58.623 39.130 0.00 0.00 0.00 2.41
279 280 3.990092 ACTCTTCGCACTTGATGTTACA 58.010 40.909 0.00 0.00 0.00 2.41
280 281 4.992381 AACTCTTCGCACTTGATGTTAC 57.008 40.909 0.00 0.00 0.00 2.50
281 282 5.297547 AGAAACTCTTCGCACTTGATGTTA 58.702 37.500 0.00 0.00 36.61 2.41
282 283 4.130118 AGAAACTCTTCGCACTTGATGTT 58.870 39.130 0.00 0.00 36.61 2.71
283 284 3.733337 AGAAACTCTTCGCACTTGATGT 58.267 40.909 0.00 0.00 36.61 3.06
284 285 4.686091 TGTAGAAACTCTTCGCACTTGATG 59.314 41.667 0.00 0.00 36.61 3.07
285 286 4.883083 TGTAGAAACTCTTCGCACTTGAT 58.117 39.130 0.00 0.00 36.61 2.57
286 287 4.316205 TGTAGAAACTCTTCGCACTTGA 57.684 40.909 0.00 0.00 36.61 3.02
287 288 5.597813 AATGTAGAAACTCTTCGCACTTG 57.402 39.130 0.00 0.00 36.61 3.16
288 289 6.293462 GGAAAATGTAGAAACTCTTCGCACTT 60.293 38.462 0.00 0.00 36.61 3.16
289 290 5.179555 GGAAAATGTAGAAACTCTTCGCACT 59.820 40.000 0.00 0.00 36.61 4.40
290 291 5.179555 AGGAAAATGTAGAAACTCTTCGCAC 59.820 40.000 0.00 0.00 36.61 5.34
291 292 5.305585 AGGAAAATGTAGAAACTCTTCGCA 58.694 37.500 0.00 0.00 36.61 5.10
292 293 5.864628 AGGAAAATGTAGAAACTCTTCGC 57.135 39.130 0.00 0.00 36.61 4.70
316 317 9.498307 CACGAGTGTGCGTATCATATATTATAA 57.502 33.333 0.00 0.00 43.59 0.98
318 319 7.971004 CACGAGTGTGCGTATCATATATTAT 57.029 36.000 0.00 0.00 43.59 1.28
333 334 0.907837 CTCGAATACGCACGAGTGTG 59.092 55.000 14.40 14.40 46.90 3.82
334 335 3.307829 CTCGAATACGCACGAGTGT 57.692 52.632 4.12 4.12 46.90 3.55
357 358 9.520515 ACACATTCTCCACATCTATTAGTTTTT 57.479 29.630 0.00 0.00 0.00 1.94
358 359 9.167311 GACACATTCTCCACATCTATTAGTTTT 57.833 33.333 0.00 0.00 0.00 2.43
359 360 8.321353 TGACACATTCTCCACATCTATTAGTTT 58.679 33.333 0.00 0.00 0.00 2.66
360 361 7.851228 TGACACATTCTCCACATCTATTAGTT 58.149 34.615 0.00 0.00 0.00 2.24
361 362 7.124901 ACTGACACATTCTCCACATCTATTAGT 59.875 37.037 0.00 0.00 0.00 2.24
362 363 7.495901 ACTGACACATTCTCCACATCTATTAG 58.504 38.462 0.00 0.00 0.00 1.73
363 364 7.423844 ACTGACACATTCTCCACATCTATTA 57.576 36.000 0.00 0.00 0.00 0.98
364 365 6.305272 ACTGACACATTCTCCACATCTATT 57.695 37.500 0.00 0.00 0.00 1.73
365 366 5.946942 ACTGACACATTCTCCACATCTAT 57.053 39.130 0.00 0.00 0.00 1.98
366 367 5.745312 AACTGACACATTCTCCACATCTA 57.255 39.130 0.00 0.00 0.00 1.98
367 368 4.630644 AACTGACACATTCTCCACATCT 57.369 40.909 0.00 0.00 0.00 2.90
368 369 5.335191 GGAAAACTGACACATTCTCCACATC 60.335 44.000 0.00 0.00 0.00 3.06
369 370 4.520492 GGAAAACTGACACATTCTCCACAT 59.480 41.667 0.00 0.00 0.00 3.21
370 371 3.882888 GGAAAACTGACACATTCTCCACA 59.117 43.478 0.00 0.00 0.00 4.17
371 372 4.137543 AGGAAAACTGACACATTCTCCAC 58.862 43.478 0.00 0.00 0.00 4.02
372 373 4.437682 AGGAAAACTGACACATTCTCCA 57.562 40.909 0.00 0.00 0.00 3.86
373 374 4.389077 CGTAGGAAAACTGACACATTCTCC 59.611 45.833 0.00 0.00 0.00 3.71
374 375 5.118817 GTCGTAGGAAAACTGACACATTCTC 59.881 44.000 0.00 0.00 0.00 2.87
375 376 4.989168 GTCGTAGGAAAACTGACACATTCT 59.011 41.667 0.00 0.00 0.00 2.40
376 377 4.989168 AGTCGTAGGAAAACTGACACATTC 59.011 41.667 0.00 0.00 32.08 2.67
377 378 4.750098 CAGTCGTAGGAAAACTGACACATT 59.250 41.667 0.00 0.00 42.37 2.71
378 379 4.307432 CAGTCGTAGGAAAACTGACACAT 58.693 43.478 0.00 0.00 42.37 3.21
379 380 3.491964 CCAGTCGTAGGAAAACTGACACA 60.492 47.826 3.42 0.00 42.37 3.72
380 381 3.057734 CCAGTCGTAGGAAAACTGACAC 58.942 50.000 3.42 0.00 42.37 3.67
381 382 2.960384 TCCAGTCGTAGGAAAACTGACA 59.040 45.455 3.42 0.00 42.37 3.58
382 383 3.655276 TCCAGTCGTAGGAAAACTGAC 57.345 47.619 3.42 0.00 42.37 3.51
383 384 3.554337 GCTTCCAGTCGTAGGAAAACTGA 60.554 47.826 3.42 0.00 44.07 3.41
384 385 2.737252 GCTTCCAGTCGTAGGAAAACTG 59.263 50.000 7.24 0.00 44.07 3.16
385 386 2.367567 TGCTTCCAGTCGTAGGAAAACT 59.632 45.455 7.24 0.00 44.07 2.66
386 387 2.737252 CTGCTTCCAGTCGTAGGAAAAC 59.263 50.000 7.24 4.26 44.07 2.43
387 388 3.040147 CTGCTTCCAGTCGTAGGAAAA 57.960 47.619 7.24 0.31 44.07 2.29
388 389 2.743636 CTGCTTCCAGTCGTAGGAAA 57.256 50.000 7.24 0.00 44.07 3.13
398 399 2.775911 TTCCTGATCACTGCTTCCAG 57.224 50.000 0.00 0.00 44.80 3.86
399 400 2.842496 AGATTCCTGATCACTGCTTCCA 59.158 45.455 0.00 0.00 37.22 3.53
400 401 3.557228 AGATTCCTGATCACTGCTTCC 57.443 47.619 0.00 0.00 37.22 3.46
401 402 4.343526 TCCTAGATTCCTGATCACTGCTTC 59.656 45.833 0.00 0.00 37.22 3.86
402 403 4.293494 TCCTAGATTCCTGATCACTGCTT 58.707 43.478 0.00 0.00 37.22 3.91
403 404 3.921104 TCCTAGATTCCTGATCACTGCT 58.079 45.455 0.00 0.00 37.22 4.24
404 405 4.617995 CGATCCTAGATTCCTGATCACTGC 60.618 50.000 0.00 0.00 37.22 4.40
405 406 4.617995 GCGATCCTAGATTCCTGATCACTG 60.618 50.000 0.00 0.00 37.22 3.66
406 407 3.509575 GCGATCCTAGATTCCTGATCACT 59.490 47.826 0.00 0.00 37.22 3.41
407 408 3.367910 GGCGATCCTAGATTCCTGATCAC 60.368 52.174 0.00 0.00 37.22 3.06
408 409 2.828520 GGCGATCCTAGATTCCTGATCA 59.171 50.000 0.00 0.00 37.22 2.92
409 410 2.167487 GGGCGATCCTAGATTCCTGATC 59.833 54.545 0.00 0.00 34.83 2.92
410 411 2.183679 GGGCGATCCTAGATTCCTGAT 58.816 52.381 0.00 0.00 0.00 2.90
411 412 1.148027 AGGGCGATCCTAGATTCCTGA 59.852 52.381 0.00 0.00 45.98 3.86
412 413 1.638529 AGGGCGATCCTAGATTCCTG 58.361 55.000 0.00 0.00 45.98 3.86
428 429 2.092753 TCTGCTTATCTTTGCCTGAGGG 60.093 50.000 0.00 0.00 0.00 4.30
429 430 3.272574 TCTGCTTATCTTTGCCTGAGG 57.727 47.619 0.00 0.00 0.00 3.86
430 431 3.493877 CGATCTGCTTATCTTTGCCTGAG 59.506 47.826 0.00 0.00 0.00 3.35
431 432 3.132824 TCGATCTGCTTATCTTTGCCTGA 59.867 43.478 0.00 0.00 0.00 3.86
432 433 3.461061 TCGATCTGCTTATCTTTGCCTG 58.539 45.455 0.00 0.00 0.00 4.85
433 434 3.827008 TCGATCTGCTTATCTTTGCCT 57.173 42.857 0.00 0.00 0.00 4.75
434 435 3.122613 CGATCGATCTGCTTATCTTTGCC 59.877 47.826 22.43 0.00 0.00 4.52
435 436 3.738282 ACGATCGATCTGCTTATCTTTGC 59.262 43.478 24.34 0.00 0.00 3.68
436 437 4.978580 TCACGATCGATCTGCTTATCTTTG 59.021 41.667 24.34 4.10 0.00 2.77
437 438 5.188327 TCACGATCGATCTGCTTATCTTT 57.812 39.130 24.34 0.00 0.00 2.52
438 439 4.837896 TCACGATCGATCTGCTTATCTT 57.162 40.909 24.34 0.00 0.00 2.40
439 440 4.980590 GATCACGATCGATCTGCTTATCT 58.019 43.478 24.34 0.00 39.02 1.98
452 453 1.202973 CCGAGCACACGATCACGATC 61.203 60.000 0.00 0.00 42.66 3.69
453 454 1.226688 CCGAGCACACGATCACGAT 60.227 57.895 0.00 0.00 42.66 3.73
454 455 2.178273 CCGAGCACACGATCACGA 59.822 61.111 0.00 0.00 42.66 4.35
455 456 2.126463 ACCGAGCACACGATCACG 60.126 61.111 0.00 0.00 45.75 4.35
456 457 2.730672 GCACCGAGCACACGATCAC 61.731 63.158 0.00 0.00 44.79 3.06
457 458 2.432456 GCACCGAGCACACGATCA 60.432 61.111 0.00 0.00 44.79 2.92
466 467 0.951558 TTTTGAAAGGAGCACCGAGC 59.048 50.000 0.00 0.00 46.19 5.03
467 468 2.878406 TCTTTTTGAAAGGAGCACCGAG 59.122 45.455 0.00 0.00 41.83 4.63
468 469 2.925724 TCTTTTTGAAAGGAGCACCGA 58.074 42.857 0.00 0.00 41.83 4.69
469 470 3.708563 TTCTTTTTGAAAGGAGCACCG 57.291 42.857 0.00 0.00 41.83 4.94
489 490 7.429425 GGTTTCTCCACACGATCACGTTTTT 62.429 44.000 0.00 0.00 42.64 1.94
490 491 6.028562 GGTTTCTCCACACGATCACGTTTT 62.029 45.833 0.00 0.00 42.64 2.43
491 492 4.593926 GGTTTCTCCACACGATCACGTTT 61.594 47.826 0.00 0.00 42.64 3.60
492 493 3.121061 GGTTTCTCCACACGATCACGTT 61.121 50.000 0.00 0.00 42.64 3.99
493 494 1.604693 GGTTTCTCCACACGATCACGT 60.605 52.381 0.00 0.00 44.11 4.49
494 495 1.068474 GGTTTCTCCACACGATCACG 58.932 55.000 0.00 0.00 39.75 4.35
495 496 1.068474 CGGTTTCTCCACACGATCAC 58.932 55.000 0.00 0.00 35.57 3.06
496 497 0.669318 GCGGTTTCTCCACACGATCA 60.669 55.000 0.00 0.00 35.57 2.92
497 498 0.669318 TGCGGTTTCTCCACACGATC 60.669 55.000 0.00 0.00 35.57 3.69
498 499 0.949105 GTGCGGTTTCTCCACACGAT 60.949 55.000 0.00 0.00 39.09 3.73
499 500 1.593209 GTGCGGTTTCTCCACACGA 60.593 57.895 0.00 0.00 39.09 4.35
500 501 2.935955 GTGCGGTTTCTCCACACG 59.064 61.111 0.00 0.00 39.09 4.49
501 502 1.557443 CGAGTGCGGTTTCTCCACAC 61.557 60.000 0.00 0.00 46.30 3.82
502 503 1.300620 CGAGTGCGGTTTCTCCACA 60.301 57.895 0.00 0.00 35.57 4.17
578 579 5.163663 GGCAAAAGGAAAACAAAGGAAAAGG 60.164 40.000 0.00 0.00 0.00 3.11
579 580 5.447144 CGGCAAAAGGAAAACAAAGGAAAAG 60.447 40.000 0.00 0.00 0.00 2.27
580 581 4.393371 CGGCAAAAGGAAAACAAAGGAAAA 59.607 37.500 0.00 0.00 0.00 2.29
581 582 3.935828 CGGCAAAAGGAAAACAAAGGAAA 59.064 39.130 0.00 0.00 0.00 3.13
582 583 3.195825 TCGGCAAAAGGAAAACAAAGGAA 59.804 39.130 0.00 0.00 0.00 3.36
583 584 2.761208 TCGGCAAAAGGAAAACAAAGGA 59.239 40.909 0.00 0.00 0.00 3.36
584 585 3.172229 TCGGCAAAAGGAAAACAAAGG 57.828 42.857 0.00 0.00 0.00 3.11
585 586 5.538067 TTTTCGGCAAAAGGAAAACAAAG 57.462 34.783 0.00 0.00 37.26 2.77
586 587 5.614887 CGTTTTTCGGCAAAAGGAAAACAAA 60.615 36.000 11.77 0.00 41.05 2.83
587 588 4.143094 CGTTTTTCGGCAAAAGGAAAACAA 60.143 37.500 11.77 0.00 41.05 2.83
588 589 3.368236 CGTTTTTCGGCAAAAGGAAAACA 59.632 39.130 11.77 0.00 41.05 2.83
589 590 3.782898 GCGTTTTTCGGCAAAAGGAAAAC 60.783 43.478 9.19 3.48 41.05 2.43
590 591 2.348971 GCGTTTTTCGGCAAAAGGAAAA 59.651 40.909 9.19 1.16 41.05 2.29
594 595 0.574922 GTGCGTTTTTCGGCAAAAGG 59.425 50.000 2.01 2.01 41.35 3.11
596 597 0.456312 ACGTGCGTTTTTCGGCAAAA 60.456 45.000 0.00 0.00 40.26 2.44
667 680 4.636435 ACTTTGACGTGGGGCCGG 62.636 66.667 0.00 0.00 0.00 6.13
668 681 3.047877 GACTTTGACGTGGGGCCG 61.048 66.667 0.00 0.00 0.00 6.13
669 682 2.671963 GGACTTTGACGTGGGGCC 60.672 66.667 0.00 0.00 0.00 5.80
732 745 3.118075 TCTTGGAATGTTGTGAGACACCA 60.118 43.478 0.00 0.00 32.73 4.17
808 821 2.966309 GAAGGGGAGCAACGCAACG 61.966 63.158 0.00 0.00 0.00 4.10
855 874 3.734463 TGCGTCACTTATTCTGTTGGAA 58.266 40.909 0.00 0.00 38.41 3.53
878 897 1.743252 GCTGCTTGTAGCCTCGCTT 60.743 57.895 0.00 0.00 41.51 4.68
879 898 2.125350 GCTGCTTGTAGCCTCGCT 60.125 61.111 0.00 0.00 41.51 4.93
880 899 3.558411 CGCTGCTTGTAGCCTCGC 61.558 66.667 5.21 0.00 41.51 5.03
881 900 2.887568 CCGCTGCTTGTAGCCTCG 60.888 66.667 5.21 0.00 41.51 4.63
882 901 1.811679 GACCGCTGCTTGTAGCCTC 60.812 63.158 5.21 0.00 41.51 4.70
883 902 2.111999 TTGACCGCTGCTTGTAGCCT 62.112 55.000 5.21 0.00 41.51 4.58
884 903 1.671054 TTGACCGCTGCTTGTAGCC 60.671 57.895 5.21 0.00 41.51 3.93
885 904 1.497722 GTTGACCGCTGCTTGTAGC 59.502 57.895 0.00 0.60 42.82 3.58
886 905 0.320771 AGGTTGACCGCTGCTTGTAG 60.321 55.000 0.00 0.00 42.08 2.74
887 906 0.970640 TAGGTTGACCGCTGCTTGTA 59.029 50.000 0.00 0.00 42.08 2.41
888 907 0.324943 ATAGGTTGACCGCTGCTTGT 59.675 50.000 0.00 0.00 42.08 3.16
889 908 2.309528 TATAGGTTGACCGCTGCTTG 57.690 50.000 0.00 0.00 42.08 4.01
983 1002 1.089112 CATGATCACGGCAGAAGCAA 58.911 50.000 0.00 0.00 44.61 3.91
1021 1041 4.463879 CTCCAGCCCACTCTGCGG 62.464 72.222 0.00 0.00 32.87 5.69
1191 1211 0.036388 GCACCACTTTCCTCGGATCA 60.036 55.000 0.00 0.00 0.00 2.92
1202 1222 2.902423 TTTGAGGCCGTGCACCACTT 62.902 55.000 12.15 0.00 31.34 3.16
1233 1253 2.599408 AGACGGAGACCAAGGTAAGA 57.401 50.000 0.00 0.00 0.00 2.10
1629 1666 3.481661 AAGCGTGGCCGATTTACG 58.518 55.556 8.13 8.13 40.25 3.18
1656 1697 8.592998 GCGCACACATAGATAATTATTAGTACC 58.407 37.037 0.30 0.00 0.00 3.34
1835 1877 2.301296 AGATTCCGATGGCTATGGTGAG 59.699 50.000 0.00 0.00 0.00 3.51
1843 1885 2.809665 GCAGATGAAGATTCCGATGGCT 60.810 50.000 0.00 0.00 0.00 4.75
1852 1894 0.531532 CGGCGAGGCAGATGAAGATT 60.532 55.000 0.00 0.00 0.00 2.40
1996 2038 2.669569 TTGGCCTGCGCACTCTTC 60.670 61.111 5.66 0.00 36.38 2.87
1997 2039 2.670934 CTTGGCCTGCGCACTCTT 60.671 61.111 5.66 0.00 36.38 2.85
1998 2040 3.890936 GACTTGGCCTGCGCACTCT 62.891 63.158 5.66 0.00 36.38 3.24
1999 2041 3.426568 GACTTGGCCTGCGCACTC 61.427 66.667 5.66 0.00 36.38 3.51
2242 2299 4.624364 CCCAGCCTCGTGCACACA 62.624 66.667 18.64 0.94 44.83 3.72
2278 2335 2.363018 CTGGACGCCTCCCTCAGA 60.363 66.667 0.00 0.00 35.34 3.27
2428 2485 2.202932 GGCATGGCGTCGATCAGT 60.203 61.111 2.41 0.00 0.00 3.41
2655 2712 5.575019 GCTCGTTTTAAACCTGTTCAGAAA 58.425 37.500 1.97 0.00 0.00 2.52
2662 2719 2.830104 AGACGCTCGTTTTAAACCTGT 58.170 42.857 1.97 0.00 0.00 4.00
2671 2728 2.924290 GCTCTTTCATAGACGCTCGTTT 59.076 45.455 0.00 0.00 0.00 3.60
2721 2781 1.535896 TGATCATACTCGGCTACTCGC 59.464 52.381 0.00 0.00 38.13 5.03
2728 2796 5.406780 CAGGTTAAATCTGATCATACTCGGC 59.593 44.000 0.00 0.00 34.36 5.54
2729 2797 6.642950 GTCAGGTTAAATCTGATCATACTCGG 59.357 42.308 11.44 0.00 42.36 4.63
2730 2798 7.203218 TGTCAGGTTAAATCTGATCATACTCG 58.797 38.462 11.44 0.00 42.36 4.18
2731 2799 8.948631 TTGTCAGGTTAAATCTGATCATACTC 57.051 34.615 11.44 1.09 42.36 2.59
2734 2802 9.778741 GGTATTGTCAGGTTAAATCTGATCATA 57.221 33.333 11.44 8.80 42.36 2.15
2735 2803 8.274322 TGGTATTGTCAGGTTAAATCTGATCAT 58.726 33.333 11.44 9.49 42.36 2.45
2778 2846 9.814507 CGCTATAGACAAGAATGTAGTTACTAG 57.185 37.037 3.21 0.00 40.74 2.57
2779 2847 9.334947 ACGCTATAGACAAGAATGTAGTTACTA 57.665 33.333 3.21 0.00 40.74 1.82
2780 2848 8.223177 ACGCTATAGACAAGAATGTAGTTACT 57.777 34.615 3.21 0.00 40.74 2.24
2781 2849 8.744011 CAACGCTATAGACAAGAATGTAGTTAC 58.256 37.037 3.21 0.00 40.74 2.50
2782 2850 7.919091 CCAACGCTATAGACAAGAATGTAGTTA 59.081 37.037 3.21 0.00 40.74 2.24
2783 2851 6.757010 CCAACGCTATAGACAAGAATGTAGTT 59.243 38.462 3.21 0.00 40.74 2.24
2785 2853 6.273825 ACCAACGCTATAGACAAGAATGTAG 58.726 40.000 3.21 0.00 40.74 2.74
2797 2866 7.013529 GCGGAAAATAATAACCAACGCTATAG 58.986 38.462 0.00 0.00 41.10 1.31
2868 2937 7.307989 CGATGATCATAAGCCGGTTTTTATTCT 60.308 37.037 9.46 0.00 0.00 2.40
2895 2964 1.271102 GATGGATGCCGGTCTACTCTC 59.729 57.143 1.90 0.00 0.00 3.20
2918 2987 8.607441 AACATATATGTATGCACAGGTACAAG 57.393 34.615 18.56 0.00 41.15 3.16
3064 3133 2.669569 TTTGTGCTCAGCCGCCTC 60.670 61.111 0.00 0.00 0.00 4.70
3090 3160 1.679977 TCCTGCAAAGCTCATGGCC 60.680 57.895 0.00 0.00 43.05 5.36
3371 3445 2.272923 TCGAGCTCGATGGGTTTGA 58.727 52.632 33.84 9.60 44.22 2.69
3441 3517 2.815211 CAGTCATGGCCACCGTCG 60.815 66.667 8.16 0.00 0.00 5.12
3445 3521 1.673168 GAATCTCAGTCATGGCCACC 58.327 55.000 8.16 0.00 0.00 4.61
3455 3531 1.965754 GAGCTGGGCCGAATCTCAGT 61.966 60.000 10.53 0.00 0.00 3.41
3456 3532 1.227497 GAGCTGGGCCGAATCTCAG 60.227 63.158 10.53 6.05 0.00 3.35
3459 4402 1.977293 GAAGGAGCTGGGCCGAATCT 61.977 60.000 0.00 0.00 0.00 2.40
3488 4431 1.003116 CTCAGTGCAGCTGTGTTTGTC 60.003 52.381 16.64 0.00 45.23 3.18
3500 4443 0.114364 TCTCCCAGTACCTCAGTGCA 59.886 55.000 0.00 0.00 0.00 4.57
3509 4452 2.757894 TCTCTCCCATCTCCCAGTAC 57.242 55.000 0.00 0.00 0.00 2.73
3598 4541 5.461526 TCGAAGATGATGATATCAACCGAC 58.538 41.667 9.99 1.84 43.50 4.79
3632 4576 1.663695 CGAAACATTATCCCGTGGCT 58.336 50.000 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.