Multiple sequence alignment - TraesCS6B01G270200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G270200 chr6B 100.000 6830 0 0 1 6830 486519794 486512965 0.000000e+00 12613
1 TraesCS6B01G270200 chr6D 95.196 4829 171 20 1875 6675 333800233 333805028 0.000000e+00 7576
2 TraesCS6B01G270200 chr6D 93.670 1169 46 16 4 1167 333798526 333799671 0.000000e+00 1724
3 TraesCS6B01G270200 chr6D 89.317 571 40 7 1305 1854 333799678 333800248 0.000000e+00 697
4 TraesCS6B01G270200 chr6D 98.438 64 1 0 6463 6526 458960020 458959957 5.600000e-21 113
5 TraesCS6B01G270200 chr6A 92.791 5174 222 41 1305 6431 473361217 473366286 0.000000e+00 7348
6 TraesCS6B01G270200 chr6A 86.686 1044 59 36 1 1017 473357099 473358089 0.000000e+00 1085
7 TraesCS6B01G270200 chr6A 89.815 216 22 0 6524 6739 473366288 473366503 1.880000e-70 278
8 TraesCS6B01G270200 chr6A 91.566 166 9 2 1011 1171 473361054 473361219 2.480000e-54 224
9 TraesCS6B01G270200 chr3D 100.000 64 0 0 6463 6526 308584362 308584425 1.200000e-22 119
10 TraesCS6B01G270200 chrUn 98.438 64 1 0 6463 6526 86474626 86474563 5.600000e-21 113
11 TraesCS6B01G270200 chr7A 98.438 64 1 0 6463 6526 60246464 60246527 5.600000e-21 113
12 TraesCS6B01G270200 chr4B 98.438 64 1 0 6463 6526 209275575 209275638 5.600000e-21 113
13 TraesCS6B01G270200 chr3A 98.438 64 1 0 6463 6526 624952678 624952741 5.600000e-21 113
14 TraesCS6B01G270200 chr1A 98.438 64 1 0 6463 6526 112008316 112008379 5.600000e-21 113
15 TraesCS6B01G270200 chr4D 96.875 64 2 0 6463 6526 285090392 285090329 2.600000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G270200 chr6B 486512965 486519794 6829 True 12613.000000 12613 100.000000 1 6830 1 chr6B.!!$R1 6829
1 TraesCS6B01G270200 chr6D 333798526 333805028 6502 False 3332.333333 7576 92.727667 4 6675 3 chr6D.!!$F1 6671
2 TraesCS6B01G270200 chr6A 473357099 473366503 9404 False 2233.750000 7348 90.214500 1 6739 4 chr6A.!!$F1 6738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 634 0.172578 CCGCCTGATCGTGAACACTA 59.827 55.0 3.51 0.0 0.00 2.74 F
1213 4242 0.099082 CCTCTCGTTCCGTGCTACTC 59.901 60.0 0.00 0.0 0.00 2.59 F
1214 4243 0.099082 CTCTCGTTCCGTGCTACTCC 59.901 60.0 0.00 0.0 0.00 3.85 F
2061 5125 0.036952 CGATTGGAGAGTGCCACTGT 60.037 55.0 0.00 0.0 37.75 3.55 F
3104 6181 0.385473 CGGTGCAAAAGGTTAGTGCG 60.385 55.0 0.00 0.0 41.27 5.34 F
4330 7437 0.179000 GGTGGGATAGCAGTGTCCTG 59.821 60.0 0.00 0.0 41.91 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 4566 0.107831 TTGTCAGAACGGTTGGGAGG 59.892 55.000 0.00 0.0 0.00 4.30 R
2040 5104 0.247736 AGTGGCACTCTCCAATCGTC 59.752 55.000 15.88 0.0 37.96 4.20 R
2228 5297 0.950836 CACAAGTCGGCACAAATCCA 59.049 50.000 0.00 0.0 0.00 3.41 R
3222 6299 2.287915 GCAGCTTCAAACGAACTCTTGA 59.712 45.455 0.00 0.0 0.00 3.02 R
4648 7755 1.030457 CCTTTGATGCTCCATCTGGC 58.970 55.000 6.74 0.0 41.06 4.85 R
5905 9016 0.322816 ACGCCTGCCAATCAACATCT 60.323 50.000 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 201 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
195 202 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
197 204 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
198 205 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
199 206 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
200 207 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
201 208 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
202 209 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
203 210 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
204 211 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
205 212 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
206 213 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
207 214 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
208 215 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
209 216 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
211 218 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
213 220 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
215 222 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
218 225 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
219 226 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
220 227 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
222 229 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
223 230 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
224 231 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
225 232 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
226 233 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
227 234 5.539574 AGAGAGAGAGAGAGAGAGAGAGATG 59.460 48.000 0.00 0.00 0.00 2.90
228 235 4.592351 AGAGAGAGAGAGAGAGAGAGATGG 59.408 50.000 0.00 0.00 0.00 3.51
229 236 3.072184 AGAGAGAGAGAGAGAGAGATGGC 59.928 52.174 0.00 0.00 0.00 4.40
230 237 3.051581 AGAGAGAGAGAGAGAGATGGCT 58.948 50.000 0.00 0.00 0.00 4.75
231 238 3.072184 AGAGAGAGAGAGAGAGATGGCTC 59.928 52.174 0.00 0.00 41.62 4.70
251 258 4.116961 CTCTTAATGACGCCGGTGATTAA 58.883 43.478 24.59 19.50 39.06 1.40
448 459 5.219343 AGTGGGGTGTAGTAAACAAGTAC 57.781 43.478 0.00 0.00 40.63 2.73
449 460 4.903649 AGTGGGGTGTAGTAAACAAGTACT 59.096 41.667 0.00 0.00 40.63 2.73
450 461 4.992951 GTGGGGTGTAGTAAACAAGTACTG 59.007 45.833 0.00 0.00 40.63 2.74
451 462 4.655186 TGGGGTGTAGTAAACAAGTACTGT 59.345 41.667 0.00 0.00 40.63 3.55
452 463 5.837979 TGGGGTGTAGTAAACAAGTACTGTA 59.162 40.000 0.00 0.00 40.63 2.74
453 464 6.159293 GGGGTGTAGTAAACAAGTACTGTAC 58.841 44.000 9.93 9.93 40.63 2.90
454 465 6.015095 GGGGTGTAGTAAACAAGTACTGTACT 60.015 42.308 14.53 14.53 40.63 2.73
458 469 9.950680 GTGTAGTAAACAAGTACTGTACTGTAA 57.049 33.333 20.34 9.99 40.63 2.41
515 526 5.975344 TGTGTCGATTAATTTAGCTCCTACG 59.025 40.000 0.00 0.00 0.00 3.51
553 564 7.436080 TGTTGATTTCACAAGCAAGATTCTTTC 59.564 33.333 0.00 0.00 38.95 2.62
569 595 3.089874 TCCAGCCAGGAATCCCCG 61.090 66.667 0.00 0.00 45.65 5.73
570 596 3.089874 CCAGCCAGGAATCCCCGA 61.090 66.667 0.00 0.00 41.22 5.14
571 597 2.190578 CAGCCAGGAATCCCCGAC 59.809 66.667 0.00 0.00 40.87 4.79
572 598 3.090532 AGCCAGGAATCCCCGACC 61.091 66.667 0.00 0.00 40.87 4.79
573 599 3.407967 GCCAGGAATCCCCGACCA 61.408 66.667 0.00 0.00 40.87 4.02
574 600 2.978946 GCCAGGAATCCCCGACCAA 61.979 63.158 0.00 0.00 40.87 3.67
575 601 1.224592 CCAGGAATCCCCGACCAAG 59.775 63.158 0.00 0.00 40.87 3.61
576 602 1.224592 CAGGAATCCCCGACCAAGG 59.775 63.158 0.00 0.00 40.87 3.61
577 603 1.082206 AGGAATCCCCGACCAAGGA 59.918 57.895 0.00 0.00 40.87 3.36
584 610 0.808755 CCCCGACCAAGGAAAAATCG 59.191 55.000 0.00 0.00 0.00 3.34
608 634 0.172578 CCGCCTGATCGTGAACACTA 59.827 55.000 3.51 0.00 0.00 2.74
619 645 4.689071 TCGTGAACACTATCAAGTTGTGT 58.311 39.130 2.11 0.00 46.40 3.72
657 683 2.969300 AAAAAGAGTTGCCCGGCCGA 62.969 55.000 30.73 2.89 0.00 5.54
741 767 1.572941 GACACGAGAAAAACGGCCC 59.427 57.895 0.00 0.00 34.93 5.80
749 775 1.834896 AGAAAAACGGCCCCAAAAACT 59.165 42.857 0.00 0.00 0.00 2.66
901 942 3.319441 TTAAACCCCTCGCGCTCCC 62.319 63.158 5.56 0.00 0.00 4.30
930 971 3.680196 ACACCGCCCTCCTCCCTA 61.680 66.667 0.00 0.00 0.00 3.53
987 1034 4.577246 GTGCTCTAGCCTCGGCCG 62.577 72.222 22.12 22.12 43.17 6.13
1069 4088 3.842923 CCATCTGGCGCTCCGACT 61.843 66.667 7.64 0.00 35.04 4.18
1142 4162 1.371512 CGCTGCTCCTAGATCTGCG 60.372 63.158 5.18 6.21 38.98 5.18
1158 4182 2.266055 CGTCACCTGGGCCTCTTC 59.734 66.667 4.53 0.00 0.00 2.87
1180 4209 3.460144 GTGTCTAGGAACACGCGC 58.540 61.111 5.73 0.00 40.09 6.86
1181 4210 2.126618 TGTCTAGGAACACGCGCG 60.127 61.111 30.96 30.96 0.00 6.86
1182 4211 2.879462 GTCTAGGAACACGCGCGG 60.879 66.667 35.22 24.36 0.00 6.46
1183 4212 3.367743 TCTAGGAACACGCGCGGT 61.368 61.111 35.22 25.06 0.00 5.68
1184 4213 2.431942 CTAGGAACACGCGCGGTT 60.432 61.111 35.22 31.19 0.00 4.44
1185 4214 2.726691 CTAGGAACACGCGCGGTTG 61.727 63.158 35.22 25.87 0.00 3.77
1203 4232 3.967715 GGTTGTGCCCTCTCGTTC 58.032 61.111 0.00 0.00 0.00 3.95
1204 4233 1.671379 GGTTGTGCCCTCTCGTTCC 60.671 63.158 0.00 0.00 0.00 3.62
1205 4234 2.027625 GTTGTGCCCTCTCGTTCCG 61.028 63.158 0.00 0.00 0.00 4.30
1206 4235 2.504274 TTGTGCCCTCTCGTTCCGT 61.504 57.895 0.00 0.00 0.00 4.69
1207 4236 2.432628 GTGCCCTCTCGTTCCGTG 60.433 66.667 0.00 0.00 0.00 4.94
1208 4237 4.373116 TGCCCTCTCGTTCCGTGC 62.373 66.667 0.00 0.00 0.00 5.34
1209 4238 4.070552 GCCCTCTCGTTCCGTGCT 62.071 66.667 0.00 0.00 0.00 4.40
1210 4239 2.707849 GCCCTCTCGTTCCGTGCTA 61.708 63.158 0.00 0.00 0.00 3.49
1211 4240 1.139095 CCCTCTCGTTCCGTGCTAC 59.861 63.158 0.00 0.00 0.00 3.58
1212 4241 1.313812 CCCTCTCGTTCCGTGCTACT 61.314 60.000 0.00 0.00 0.00 2.57
1213 4242 0.099082 CCTCTCGTTCCGTGCTACTC 59.901 60.000 0.00 0.00 0.00 2.59
1214 4243 0.099082 CTCTCGTTCCGTGCTACTCC 59.901 60.000 0.00 0.00 0.00 3.85
1215 4244 0.607217 TCTCGTTCCGTGCTACTCCA 60.607 55.000 0.00 0.00 0.00 3.86
1216 4245 0.456312 CTCGTTCCGTGCTACTCCAC 60.456 60.000 0.00 0.00 0.00 4.02
1217 4246 1.445582 CGTTCCGTGCTACTCCACC 60.446 63.158 0.00 0.00 32.10 4.61
1218 4247 1.445582 GTTCCGTGCTACTCCACCG 60.446 63.158 0.00 0.00 32.10 4.94
1219 4248 1.604308 TTCCGTGCTACTCCACCGA 60.604 57.895 0.00 0.00 32.10 4.69
1220 4249 0.968901 TTCCGTGCTACTCCACCGAT 60.969 55.000 0.00 0.00 32.10 4.18
1221 4250 1.065928 CCGTGCTACTCCACCGATC 59.934 63.158 0.00 0.00 32.10 3.69
1222 4251 1.384989 CCGTGCTACTCCACCGATCT 61.385 60.000 0.00 0.00 32.10 2.75
1223 4252 0.248661 CGTGCTACTCCACCGATCTG 60.249 60.000 0.00 0.00 32.10 2.90
1224 4253 1.103803 GTGCTACTCCACCGATCTGA 58.896 55.000 0.00 0.00 0.00 3.27
1225 4254 1.476891 GTGCTACTCCACCGATCTGAA 59.523 52.381 0.00 0.00 0.00 3.02
1226 4255 2.101582 GTGCTACTCCACCGATCTGAAT 59.898 50.000 0.00 0.00 0.00 2.57
1227 4256 2.766263 TGCTACTCCACCGATCTGAATT 59.234 45.455 0.00 0.00 0.00 2.17
1228 4257 3.958147 TGCTACTCCACCGATCTGAATTA 59.042 43.478 0.00 0.00 0.00 1.40
1229 4258 4.202121 TGCTACTCCACCGATCTGAATTAC 60.202 45.833 0.00 0.00 0.00 1.89
1230 4259 4.038162 GCTACTCCACCGATCTGAATTACT 59.962 45.833 0.00 0.00 0.00 2.24
1231 4260 5.241064 GCTACTCCACCGATCTGAATTACTA 59.759 44.000 0.00 0.00 0.00 1.82
1232 4261 5.517322 ACTCCACCGATCTGAATTACTAC 57.483 43.478 0.00 0.00 0.00 2.73
1233 4262 5.202004 ACTCCACCGATCTGAATTACTACT 58.798 41.667 0.00 0.00 0.00 2.57
1234 4263 5.067936 ACTCCACCGATCTGAATTACTACTG 59.932 44.000 0.00 0.00 0.00 2.74
1235 4264 4.051922 CCACCGATCTGAATTACTACTGC 58.948 47.826 0.00 0.00 0.00 4.40
1236 4265 3.731216 CACCGATCTGAATTACTACTGCG 59.269 47.826 0.00 0.00 0.00 5.18
1237 4266 3.630769 ACCGATCTGAATTACTACTGCGA 59.369 43.478 0.00 0.00 0.00 5.10
1238 4267 3.975670 CCGATCTGAATTACTACTGCGAC 59.024 47.826 0.00 0.00 0.00 5.19
1239 4268 4.261238 CCGATCTGAATTACTACTGCGACT 60.261 45.833 0.00 0.00 0.00 4.18
1240 4269 4.672862 CGATCTGAATTACTACTGCGACTG 59.327 45.833 0.00 0.00 0.00 3.51
1241 4270 3.770666 TCTGAATTACTACTGCGACTGC 58.229 45.455 0.00 0.00 43.20 4.40
1261 4290 3.701532 CACTAGCAGTGTAGGTAGCTC 57.298 52.381 0.00 0.00 41.19 4.09
1262 4291 3.017442 CACTAGCAGTGTAGGTAGCTCA 58.983 50.000 0.00 0.00 41.19 4.26
1263 4292 3.018149 ACTAGCAGTGTAGGTAGCTCAC 58.982 50.000 0.00 7.04 41.95 3.51
1264 4293 2.223803 AGCAGTGTAGGTAGCTCACT 57.776 50.000 16.37 16.37 42.14 3.41
1265 4294 2.530701 AGCAGTGTAGGTAGCTCACTT 58.469 47.619 18.36 7.95 39.89 3.16
1266 4295 2.232452 AGCAGTGTAGGTAGCTCACTTG 59.768 50.000 18.36 15.41 39.89 3.16
1267 4296 2.675317 GCAGTGTAGGTAGCTCACTTGG 60.675 54.545 18.36 12.40 39.89 3.61
1268 4297 1.550976 AGTGTAGGTAGCTCACTTGGC 59.449 52.381 16.37 0.00 39.00 4.52
1269 4298 1.275291 GTGTAGGTAGCTCACTTGGCA 59.725 52.381 0.00 0.00 0.00 4.92
1270 4299 1.275291 TGTAGGTAGCTCACTTGGCAC 59.725 52.381 0.00 0.00 0.00 5.01
1271 4300 1.550976 GTAGGTAGCTCACTTGGCACT 59.449 52.381 0.00 0.00 0.00 4.40
1272 4301 1.938585 AGGTAGCTCACTTGGCACTA 58.061 50.000 0.00 0.00 0.00 2.74
1273 4302 2.257207 AGGTAGCTCACTTGGCACTAA 58.743 47.619 0.00 0.00 0.00 2.24
1274 4303 2.840651 AGGTAGCTCACTTGGCACTAAT 59.159 45.455 0.00 0.00 0.00 1.73
1275 4304 3.264450 AGGTAGCTCACTTGGCACTAATT 59.736 43.478 0.00 0.00 0.00 1.40
1276 4305 3.375299 GGTAGCTCACTTGGCACTAATTG 59.625 47.826 0.00 0.00 0.00 2.32
1289 4318 5.577860 GCACTAATTGCGTAGTTATCTCC 57.422 43.478 0.00 0.00 42.79 3.71
1290 4319 5.047847 GCACTAATTGCGTAGTTATCTCCA 58.952 41.667 0.00 0.00 42.79 3.86
1291 4320 5.050972 GCACTAATTGCGTAGTTATCTCCAC 60.051 44.000 0.00 0.00 42.79 4.02
1292 4321 6.040247 CACTAATTGCGTAGTTATCTCCACA 58.960 40.000 0.00 0.00 31.78 4.17
1293 4322 6.019801 CACTAATTGCGTAGTTATCTCCACAC 60.020 42.308 0.00 0.00 31.78 3.82
1294 4323 3.945981 TTGCGTAGTTATCTCCACACA 57.054 42.857 0.00 0.00 0.00 3.72
1295 4324 4.465632 TTGCGTAGTTATCTCCACACAT 57.534 40.909 0.00 0.00 0.00 3.21
1296 4325 4.465632 TGCGTAGTTATCTCCACACATT 57.534 40.909 0.00 0.00 0.00 2.71
1297 4326 4.430007 TGCGTAGTTATCTCCACACATTC 58.570 43.478 0.00 0.00 0.00 2.67
1298 4327 4.081917 TGCGTAGTTATCTCCACACATTCA 60.082 41.667 0.00 0.00 0.00 2.57
1299 4328 4.267928 GCGTAGTTATCTCCACACATTCAC 59.732 45.833 0.00 0.00 0.00 3.18
1300 4329 5.407502 CGTAGTTATCTCCACACATTCACA 58.592 41.667 0.00 0.00 0.00 3.58
1301 4330 5.516696 CGTAGTTATCTCCACACATTCACAG 59.483 44.000 0.00 0.00 0.00 3.66
1302 4331 5.745312 AGTTATCTCCACACATTCACAGA 57.255 39.130 0.00 0.00 0.00 3.41
1303 4332 5.728471 AGTTATCTCCACACATTCACAGAG 58.272 41.667 0.00 0.00 0.00 3.35
1304 4333 5.247110 AGTTATCTCCACACATTCACAGAGT 59.753 40.000 0.00 0.00 0.00 3.24
1305 4334 6.437477 AGTTATCTCCACACATTCACAGAGTA 59.563 38.462 0.00 0.00 0.00 2.59
1306 4335 4.790765 TCTCCACACATTCACAGAGTAG 57.209 45.455 0.00 0.00 0.00 2.57
1307 4336 3.056536 TCTCCACACATTCACAGAGTAGC 60.057 47.826 0.00 0.00 0.00 3.58
1308 4337 2.899900 TCCACACATTCACAGAGTAGCT 59.100 45.455 0.00 0.00 0.00 3.32
1309 4338 4.086457 TCCACACATTCACAGAGTAGCTA 58.914 43.478 0.00 0.00 0.00 3.32
1318 4347 0.101399 CAGAGTAGCTACTGCCGGTG 59.899 60.000 30.70 14.91 40.80 4.94
1349 4378 6.476706 GGAAAATTCTGGTTCTGTGTTTCTTG 59.523 38.462 0.00 0.00 0.00 3.02
1387 4416 1.628447 TTTACACCGCGGCGTTCATC 61.628 55.000 25.67 0.00 0.00 2.92
1436 4465 2.852449 TCCCAACATCAAACTTGCGTA 58.148 42.857 0.00 0.00 0.00 4.42
1440 4469 3.974401 CCAACATCAAACTTGCGTAACAG 59.026 43.478 0.00 0.00 0.00 3.16
1443 4472 3.625764 ACATCAAACTTGCGTAACAGTGT 59.374 39.130 0.00 0.00 0.00 3.55
1444 4473 4.812091 ACATCAAACTTGCGTAACAGTGTA 59.188 37.500 0.00 0.00 0.00 2.90
1448 4477 5.404366 TCAAACTTGCGTAACAGTGTATCTC 59.596 40.000 0.00 0.00 0.00 2.75
1451 4480 3.127081 TGCGTAACAGTGTATCTCGTC 57.873 47.619 0.00 0.00 0.00 4.20
1507 4543 6.370718 GGATCTCAAGCTGAATTTGCATTTTT 59.629 34.615 7.05 0.00 0.00 1.94
1524 4572 0.551879 TTTTGTCCCGTTTCCTCCCA 59.448 50.000 0.00 0.00 0.00 4.37
1525 4573 0.551879 TTTGTCCCGTTTCCTCCCAA 59.448 50.000 0.00 0.00 0.00 4.12
1529 4577 2.428622 CCGTTTCCTCCCAACCGT 59.571 61.111 0.00 0.00 0.00 4.83
1539 4587 2.294074 CTCCCAACCGTTCTGACAAAA 58.706 47.619 0.00 0.00 0.00 2.44
1626 4686 2.224314 GGGATAGTACACGTACGTAGCC 59.776 54.545 22.34 16.89 40.80 3.93
1638 4698 1.349067 ACGTAGCCCTCAAGGACTTT 58.651 50.000 0.00 0.00 38.24 2.66
1649 4709 4.006319 CTCAAGGACTTTCTTTAGGCAGG 58.994 47.826 0.00 0.00 0.00 4.85
1833 4893 7.452630 TTTTAATTGTACGTGTTTCTTTGCC 57.547 32.000 0.00 0.00 0.00 4.52
1843 4903 6.608610 ACGTGTTTCTTTGCCTATTAATGTC 58.391 36.000 0.00 0.00 0.00 3.06
1909 4973 6.769512 TCTTAGACCTGTGCAAAGTTTAGAT 58.230 36.000 2.51 0.00 0.00 1.98
1940 5004 3.191371 CCCTGGAACTTGTACATTTCAGC 59.809 47.826 10.81 1.35 0.00 4.26
1957 5021 2.040278 TCAGCCTACCTGCTCATTTGTT 59.960 45.455 0.00 0.00 40.32 2.83
1980 5044 7.706179 TGTTTTTATTTTTCAGAACTCTGCTGG 59.294 33.333 1.61 0.00 43.46 4.85
2040 5104 4.023792 TGCTTCTCATGTACAAGTTTGCTG 60.024 41.667 0.00 0.00 0.00 4.41
2061 5125 0.036952 CGATTGGAGAGTGCCACTGT 60.037 55.000 0.00 0.00 37.75 3.55
2176 5245 6.866480 TGATTCAGTTTTCTTTTGCAAGTCT 58.134 32.000 0.00 0.00 0.00 3.24
2177 5246 7.995289 TGATTCAGTTTTCTTTTGCAAGTCTA 58.005 30.769 0.00 0.00 0.00 2.59
2178 5247 7.915397 TGATTCAGTTTTCTTTTGCAAGTCTAC 59.085 33.333 0.00 0.00 0.00 2.59
2179 5248 6.751514 TCAGTTTTCTTTTGCAAGTCTACA 57.248 33.333 0.00 0.00 0.00 2.74
2180 5249 7.333528 TCAGTTTTCTTTTGCAAGTCTACAT 57.666 32.000 0.00 0.00 0.00 2.29
2181 5250 7.417612 TCAGTTTTCTTTTGCAAGTCTACATC 58.582 34.615 0.00 0.00 0.00 3.06
2192 5261 4.541779 CAAGTCTACATCGGTATCTCTGC 58.458 47.826 0.00 0.00 0.00 4.26
2214 5283 7.768120 TCTGCTTTAAATGGTTTTGTGTCATTT 59.232 29.630 0.00 0.00 41.89 2.32
2222 5291 8.558973 AATGGTTTTGTGTCATTTCTCAAAAA 57.441 26.923 0.00 0.00 40.15 1.94
2270 5345 7.170658 TGTGGCTAAATACTGCAACAATTTTTC 59.829 33.333 6.04 0.92 39.82 2.29
2282 5357 5.363939 CAACAATTTTTCCCTGTTAAGGCA 58.636 37.500 0.00 0.00 42.96 4.75
2359 5434 6.633500 TGGTGTTAACTCTCTCAAAAATGG 57.367 37.500 7.22 0.00 0.00 3.16
2360 5435 6.126409 TGGTGTTAACTCTCTCAAAAATGGT 58.874 36.000 7.22 0.00 0.00 3.55
2361 5436 6.039270 TGGTGTTAACTCTCTCAAAAATGGTG 59.961 38.462 7.22 0.00 0.00 4.17
2362 5437 6.039382 GGTGTTAACTCTCTCAAAAATGGTGT 59.961 38.462 7.22 0.00 0.00 4.16
2363 5438 7.416326 GGTGTTAACTCTCTCAAAAATGGTGTT 60.416 37.037 7.22 0.00 0.00 3.32
2364 5439 8.617809 GTGTTAACTCTCTCAAAAATGGTGTTA 58.382 33.333 7.22 0.00 0.00 2.41
2365 5440 9.179909 TGTTAACTCTCTCAAAAATGGTGTTAA 57.820 29.630 7.22 0.00 0.00 2.01
2366 5441 9.447040 GTTAACTCTCTCAAAAATGGTGTTAAC 57.553 33.333 0.00 0.00 38.44 2.01
2367 5442 7.881775 AACTCTCTCAAAAATGGTGTTAACT 57.118 32.000 7.22 0.00 0.00 2.24
2368 5443 7.497925 ACTCTCTCAAAAATGGTGTTAACTC 57.502 36.000 7.22 2.89 0.00 3.01
2369 5444 7.283329 ACTCTCTCAAAAATGGTGTTAACTCT 58.717 34.615 7.22 0.00 0.00 3.24
2370 5445 7.442666 ACTCTCTCAAAAATGGTGTTAACTCTC 59.557 37.037 7.22 0.00 0.00 3.20
2371 5446 7.509546 TCTCTCAAAAATGGTGTTAACTCTCT 58.490 34.615 7.22 0.00 0.00 3.10
2579 5654 1.234821 CAACGCAGAAAACCTAGGCA 58.765 50.000 9.30 0.00 0.00 4.75
2787 5862 6.356977 CGCATGGACATATAATTCACGTTTTC 59.643 38.462 0.00 0.00 0.00 2.29
2932 6009 6.350194 GGTTATTCGCCTTTTCTTCTTTCCAT 60.350 38.462 0.00 0.00 0.00 3.41
2933 6010 4.766404 TTCGCCTTTTCTTCTTTCCATC 57.234 40.909 0.00 0.00 0.00 3.51
2940 6017 5.924825 CCTTTTCTTCTTTCCATCAAGCTTG 59.075 40.000 20.81 20.81 0.00 4.01
2972 6049 2.291540 CCATTCTTAAGGCAGTTGGGGA 60.292 50.000 1.85 0.00 0.00 4.81
3024 6101 4.002982 TGATTAGTCACTGAAAAGCGCAT 58.997 39.130 11.47 0.00 0.00 4.73
3104 6181 0.385473 CGGTGCAAAAGGTTAGTGCG 60.385 55.000 0.00 0.00 41.27 5.34
3136 6213 8.578308 TTTCTCAAATGCAACTCTTACAATTG 57.422 30.769 3.24 3.24 0.00 2.32
3157 6234 9.605955 CAATTGTTCGTTATAGAAACACAATCA 57.394 29.630 0.00 0.00 29.73 2.57
3213 6290 8.616076 CCTGATATCATTGGTTCAGTCTAAAAC 58.384 37.037 5.72 0.00 35.01 2.43
3222 6299 6.177610 TGGTTCAGTCTAAAACAACTGTTCT 58.822 36.000 0.00 0.00 42.76 3.01
3429 6514 8.202745 TGCATCACGACATAACAATTGTATAA 57.797 30.769 12.39 0.90 0.00 0.98
3474 6560 3.070734 CCCATTCACCAGGTATCTGAGAG 59.929 52.174 3.99 0.00 43.49 3.20
3478 6564 2.762887 TCACCAGGTATCTGAGAGCTTG 59.237 50.000 3.99 1.14 43.49 4.01
3605 6691 4.997905 TTTCAACTCAATTCTCTGAGCG 57.002 40.909 0.00 0.00 45.72 5.03
3606 6692 3.667497 TCAACTCAATTCTCTGAGCGT 57.333 42.857 0.00 0.00 45.72 5.07
3690 6776 5.083821 AGGCATAGAATCTCTAGGGAGTTC 58.916 45.833 0.00 2.84 40.29 3.01
3721 6807 1.066358 TCGAGCAGTTACTCTCCGAGA 60.066 52.381 0.00 0.00 34.35 4.04
3877 6963 7.543172 CACAATAGTGGTTCAGAAAATCCATTG 59.457 37.037 0.00 1.77 42.13 2.82
4013 7102 5.934402 TCTAGGATACCACCTTCAAAGTC 57.066 43.478 0.00 0.00 41.00 3.01
4094 7201 6.471233 TCAAACCCATGTTATTTGACAACA 57.529 33.333 10.56 0.00 37.41 3.33
4095 7202 6.878317 TCAAACCCATGTTATTTGACAACAA 58.122 32.000 10.56 0.00 39.22 2.83
4096 7203 6.758886 TCAAACCCATGTTATTTGACAACAAC 59.241 34.615 10.56 5.32 39.22 3.32
4097 7204 5.860941 ACCCATGTTATTTGACAACAACA 57.139 34.783 13.96 13.96 39.22 3.33
4098 7205 6.227298 ACCCATGTTATTTGACAACAACAA 57.773 33.333 15.06 3.84 39.22 2.83
4099 7206 6.045955 ACCCATGTTATTTGACAACAACAAC 58.954 36.000 15.06 6.19 39.22 3.32
4100 7207 6.045318 CCCATGTTATTTGACAACAACAACA 58.955 36.000 15.06 10.41 41.26 3.33
4101 7208 6.536582 CCCATGTTATTTGACAACAACAACAA 59.463 34.615 15.06 0.00 40.84 2.83
4102 7209 7.397970 CCATGTTATTTGACAACAACAACAAC 58.602 34.615 15.06 0.00 40.84 3.32
4103 7210 7.063898 CCATGTTATTTGACAACAACAACAACA 59.936 33.333 15.06 0.00 40.84 3.33
4104 7211 7.946655 TGTTATTTGACAACAACAACAACAA 57.053 28.000 10.63 0.00 37.80 2.83
4105 7212 7.788055 TGTTATTTGACAACAACAACAACAAC 58.212 30.769 10.63 0.00 37.80 3.32
4106 7213 7.438160 TGTTATTTGACAACAACAACAACAACA 59.562 29.630 10.63 0.00 37.80 3.33
4107 7214 6.851222 ATTTGACAACAACAACAACAACAA 57.149 29.167 0.00 0.00 35.63 2.83
4108 7215 5.643339 TTGACAACAACAACAACAACAAC 57.357 34.783 0.00 0.00 0.00 3.32
4171 7278 6.263842 TCGATACTACCGGATTTACTTCACAT 59.736 38.462 9.46 0.00 0.00 3.21
4196 7303 5.352569 GCTAATTGTGCAGTCTATGAGTTGT 59.647 40.000 0.00 0.00 0.00 3.32
4224 7331 5.938322 TGAAATATTGGAAGAAACGACTGC 58.062 37.500 0.00 0.00 0.00 4.40
4231 7338 2.029964 GAAACGACTGCGGGGACA 59.970 61.111 0.00 0.00 43.17 4.02
4238 7345 2.982130 CTGCGGGGACAGTAAGCT 59.018 61.111 0.00 0.00 32.78 3.74
4247 7354 0.248296 GACAGTAAGCTCTCGCGGAG 60.248 60.000 17.10 17.10 44.49 4.63
4253 7360 1.662438 AAGCTCTCGCGGAGAAGGAG 61.662 60.000 23.26 14.19 44.45 3.69
4265 7372 2.692041 GGAGAAGGAGGCAATGGAAATG 59.308 50.000 0.00 0.00 0.00 2.32
4303 7410 3.657634 CACTGTATTCGATCCCCTCATG 58.342 50.000 0.00 0.00 0.00 3.07
4320 7427 3.756963 CTCATGCATGATTGGTGGGATAG 59.243 47.826 28.81 9.56 36.02 2.08
4330 7437 0.179000 GGTGGGATAGCAGTGTCCTG 59.821 60.000 0.00 0.00 41.91 3.86
4403 7510 4.885907 CAGAACAGGCAAATAGTGATCCAT 59.114 41.667 0.00 0.00 0.00 3.41
4423 7530 1.893315 TATCAGTTGAAGGGAGGGGG 58.107 55.000 0.00 0.00 0.00 5.40
4426 7533 1.132332 TCAGTTGAAGGGAGGGGGTTA 60.132 52.381 0.00 0.00 0.00 2.85
4466 7573 3.323691 TGAAGAACTGCTTGGTGCTAGTA 59.676 43.478 0.00 0.00 43.37 1.82
4472 7579 5.422214 ACTGCTTGGTGCTAGTAGTAATT 57.578 39.130 0.00 0.00 43.37 1.40
4573 7680 0.912486 GGTACACCCTCCAGCAAGAT 59.088 55.000 0.00 0.00 0.00 2.40
4630 7737 1.140312 TGAACTTCCCTTCCAGCAGT 58.860 50.000 0.00 0.00 0.00 4.40
4648 7755 7.066163 TCCAGCAGTTATACATCTGAAAATGTG 59.934 37.037 0.00 0.00 40.08 3.21
4652 7759 7.191551 CAGTTATACATCTGAAAATGTGCCAG 58.808 38.462 0.00 0.00 40.08 4.85
4653 7760 7.066163 CAGTTATACATCTGAAAATGTGCCAGA 59.934 37.037 0.00 0.00 40.08 3.86
4714 7821 6.484364 TTATCTATGGATGACAGTTGCAGA 57.516 37.500 1.10 0.00 33.71 4.26
5153 8260 5.525378 CCCTGTACTGACTTTCTATTCATGC 59.475 44.000 0.60 0.00 0.00 4.06
5166 8273 9.970243 CTTTCTATTCATGCGATTATGAAGATC 57.030 33.333 13.17 0.00 46.70 2.75
5400 8507 2.892852 CCCCAGTGCAGAAATTTGAGAA 59.107 45.455 0.00 0.00 0.00 2.87
5472 8579 1.683917 GAGATAGCAGACACCATCCGT 59.316 52.381 0.00 0.00 0.00 4.69
5568 8679 4.704965 AGGTAGAGAATATTTGTTCGGCC 58.295 43.478 0.00 0.00 33.36 6.13
5594 8705 4.988744 TTTTTGGCGGGAGTGACA 57.011 50.000 0.00 0.00 0.00 3.58
5595 8706 3.430473 TTTTTGGCGGGAGTGACAT 57.570 47.368 0.00 0.00 0.00 3.06
5596 8707 2.570415 TTTTTGGCGGGAGTGACATA 57.430 45.000 0.00 0.00 0.00 2.29
5843 8954 4.811024 TGAGAGATGACAGTGAACACAAAC 59.189 41.667 7.68 0.00 0.00 2.93
5847 8958 5.824429 AGATGACAGTGAACACAAACATTG 58.176 37.500 7.68 0.00 0.00 2.82
5867 8978 3.680169 TGGGAGAAGATCATATTGGGGT 58.320 45.455 0.00 0.00 0.00 4.95
5897 9008 4.101585 ACTGGAGACATTCAGAGTGTTGAA 59.898 41.667 0.00 0.00 41.51 2.69
5905 9016 1.684450 TCAGAGTGTTGAACGGTGCTA 59.316 47.619 0.00 0.00 0.00 3.49
5937 9048 2.101917 GGCAGGCGTTAATAGGAGTACA 59.898 50.000 0.00 0.00 0.00 2.90
5969 9080 1.137404 GCGGATGTGCATTGTGTCC 59.863 57.895 0.00 0.00 34.15 4.02
5985 9096 6.773976 TTGTGTCCTGAAGAAAAGTTTCAT 57.226 33.333 6.56 0.00 39.61 2.57
6104 9215 9.482627 AGTTGTTTCTTGTTTGTAATTGAAACA 57.517 25.926 12.94 12.94 46.04 2.83
6119 9230 9.677567 GTAATTGAAACACTTGTGTGAATGTAT 57.322 29.630 7.20 0.00 46.55 2.29
6139 9250 7.646446 TGTATGTTATCTGTTGTGTGTGTAC 57.354 36.000 0.00 0.00 0.00 2.90
6204 9316 9.688592 AGAATTGAGTTATCTTTGCTCTTTTTG 57.311 29.630 0.00 0.00 0.00 2.44
6216 9328 7.500892 TCTTTGCTCTTTTTGTATGTCAGGTAA 59.499 33.333 0.00 0.00 0.00 2.85
6242 9354 1.202580 AGTGTGCCACTCACTCTGTTC 60.203 52.381 0.00 0.00 44.94 3.18
6243 9355 1.123077 TGTGCCACTCACTCTGTTCT 58.877 50.000 0.00 0.00 45.81 3.01
6365 9478 4.743151 CCGTTTAGGTTTTTCTTTCAAGCC 59.257 41.667 0.00 0.00 34.51 4.35
6445 9558 1.077930 CCGTCGACTCAGAGGGGTA 60.078 63.158 14.70 0.00 41.17 3.69
6455 9568 5.302059 CGACTCAGAGGGGTATTCATAAAGA 59.698 44.000 1.53 0.00 0.00 2.52
6468 9581 8.108782 GGTATTCATAAAGAGAAGTTTTCGACG 58.891 37.037 0.00 0.00 34.02 5.12
6546 9659 2.359169 GGACGGTCCATGCTCAGGA 61.359 63.158 22.10 0.00 36.28 3.86
6565 9678 4.216257 CAGGAAGGACATGGTGTGTTTTAG 59.784 45.833 0.00 0.00 42.36 1.85
6670 9784 4.020485 CCAGTAAACAACAGTAGGTAGGCT 60.020 45.833 0.00 0.00 0.00 4.58
6690 9804 4.566907 GGCTGAGGTAAACCCTATTTGACA 60.567 45.833 0.00 0.00 46.51 3.58
6693 9807 4.947388 TGAGGTAAACCCTATTTGACATGC 59.053 41.667 0.00 0.00 46.51 4.06
6733 9847 2.897326 CACATAGGGATACACCGATGGA 59.103 50.000 9.55 0.00 44.80 3.41
6739 9853 1.120530 GATACACCGATGGACTGGGT 58.879 55.000 0.00 0.00 36.17 4.51
6741 9855 3.068881 CACCGATGGACTGGGTGT 58.931 61.111 1.37 0.00 45.86 4.16
6742 9856 2.282827 CACCGATGGACTGGGTGTA 58.717 57.895 1.37 0.00 45.86 2.90
6743 9857 0.611200 CACCGATGGACTGGGTGTAA 59.389 55.000 1.37 0.00 45.86 2.41
6744 9858 0.611714 ACCGATGGACTGGGTGTAAC 59.388 55.000 0.00 0.00 34.16 2.50
6745 9859 0.611200 CCGATGGACTGGGTGTAACA 59.389 55.000 0.00 0.00 39.98 2.41
6746 9860 1.674817 CCGATGGACTGGGTGTAACAC 60.675 57.143 0.00 0.00 44.11 3.32
6758 9872 2.816689 GTGTAACACCCTGGTTTTTGC 58.183 47.619 0.00 0.00 36.32 3.68
6759 9873 2.429250 GTGTAACACCCTGGTTTTTGCT 59.571 45.455 0.00 0.00 36.32 3.91
6760 9874 2.428890 TGTAACACCCTGGTTTTTGCTG 59.571 45.455 0.00 0.00 32.29 4.41
6761 9875 0.829990 AACACCCTGGTTTTTGCTGG 59.170 50.000 0.00 0.00 0.00 4.85
6762 9876 0.325203 ACACCCTGGTTTTTGCTGGT 60.325 50.000 0.00 0.00 0.00 4.00
6763 9877 0.829990 CACCCTGGTTTTTGCTGGTT 59.170 50.000 0.00 0.00 0.00 3.67
6764 9878 1.209261 CACCCTGGTTTTTGCTGGTTT 59.791 47.619 0.00 0.00 0.00 3.27
6765 9879 1.912731 ACCCTGGTTTTTGCTGGTTTT 59.087 42.857 0.00 0.00 0.00 2.43
6766 9880 2.307392 ACCCTGGTTTTTGCTGGTTTTT 59.693 40.909 0.00 0.00 0.00 1.94
6767 9881 2.682352 CCCTGGTTTTTGCTGGTTTTTG 59.318 45.455 0.00 0.00 0.00 2.44
6768 9882 3.342719 CCTGGTTTTTGCTGGTTTTTGT 58.657 40.909 0.00 0.00 0.00 2.83
6769 9883 3.373748 CCTGGTTTTTGCTGGTTTTTGTC 59.626 43.478 0.00 0.00 0.00 3.18
6770 9884 3.999663 CTGGTTTTTGCTGGTTTTTGTCA 59.000 39.130 0.00 0.00 0.00 3.58
6771 9885 4.583871 TGGTTTTTGCTGGTTTTTGTCAT 58.416 34.783 0.00 0.00 0.00 3.06
6772 9886 4.633565 TGGTTTTTGCTGGTTTTTGTCATC 59.366 37.500 0.00 0.00 0.00 2.92
6773 9887 4.633565 GGTTTTTGCTGGTTTTTGTCATCA 59.366 37.500 0.00 0.00 0.00 3.07
6774 9888 5.296531 GGTTTTTGCTGGTTTTTGTCATCAT 59.703 36.000 0.00 0.00 0.00 2.45
6775 9889 6.481644 GGTTTTTGCTGGTTTTTGTCATCATA 59.518 34.615 0.00 0.00 0.00 2.15
6776 9890 7.344441 GTTTTTGCTGGTTTTTGTCATCATAC 58.656 34.615 0.00 0.00 0.00 2.39
6777 9891 6.403866 TTTGCTGGTTTTTGTCATCATACT 57.596 33.333 0.00 0.00 0.00 2.12
6778 9892 6.403866 TTGCTGGTTTTTGTCATCATACTT 57.596 33.333 0.00 0.00 0.00 2.24
6779 9893 6.403866 TGCTGGTTTTTGTCATCATACTTT 57.596 33.333 0.00 0.00 0.00 2.66
6780 9894 6.815089 TGCTGGTTTTTGTCATCATACTTTT 58.185 32.000 0.00 0.00 0.00 2.27
6781 9895 6.922957 TGCTGGTTTTTGTCATCATACTTTTC 59.077 34.615 0.00 0.00 0.00 2.29
6782 9896 6.922957 GCTGGTTTTTGTCATCATACTTTTCA 59.077 34.615 0.00 0.00 0.00 2.69
6783 9897 7.599998 GCTGGTTTTTGTCATCATACTTTTCAT 59.400 33.333 0.00 0.00 0.00 2.57
6784 9898 9.132521 CTGGTTTTTGTCATCATACTTTTCATC 57.867 33.333 0.00 0.00 0.00 2.92
6785 9899 8.859090 TGGTTTTTGTCATCATACTTTTCATCT 58.141 29.630 0.00 0.00 0.00 2.90
6786 9900 9.132521 GGTTTTTGTCATCATACTTTTCATCTG 57.867 33.333 0.00 0.00 0.00 2.90
6787 9901 8.642020 GTTTTTGTCATCATACTTTTCATCTGC 58.358 33.333 0.00 0.00 0.00 4.26
6788 9902 6.441093 TTGTCATCATACTTTTCATCTGCC 57.559 37.500 0.00 0.00 0.00 4.85
6789 9903 5.748402 TGTCATCATACTTTTCATCTGCCT 58.252 37.500 0.00 0.00 0.00 4.75
6790 9904 6.182627 TGTCATCATACTTTTCATCTGCCTT 58.817 36.000 0.00 0.00 0.00 4.35
6791 9905 6.660521 TGTCATCATACTTTTCATCTGCCTTT 59.339 34.615 0.00 0.00 0.00 3.11
6792 9906 7.177216 TGTCATCATACTTTTCATCTGCCTTTT 59.823 33.333 0.00 0.00 0.00 2.27
6793 9907 7.699812 GTCATCATACTTTTCATCTGCCTTTTC 59.300 37.037 0.00 0.00 0.00 2.29
6794 9908 7.613022 TCATCATACTTTTCATCTGCCTTTTCT 59.387 33.333 0.00 0.00 0.00 2.52
6795 9909 7.765695 TCATACTTTTCATCTGCCTTTTCTT 57.234 32.000 0.00 0.00 0.00 2.52
6796 9910 8.181904 TCATACTTTTCATCTGCCTTTTCTTT 57.818 30.769 0.00 0.00 0.00 2.52
6797 9911 8.084073 TCATACTTTTCATCTGCCTTTTCTTTG 58.916 33.333 0.00 0.00 0.00 2.77
6798 9912 6.469782 ACTTTTCATCTGCCTTTTCTTTGA 57.530 33.333 0.00 0.00 0.00 2.69
6799 9913 6.877236 ACTTTTCATCTGCCTTTTCTTTGAA 58.123 32.000 0.00 0.00 0.00 2.69
6800 9914 7.330262 ACTTTTCATCTGCCTTTTCTTTGAAA 58.670 30.769 0.00 0.00 31.77 2.69
6801 9915 7.989170 ACTTTTCATCTGCCTTTTCTTTGAAAT 59.011 29.630 0.00 0.00 33.23 2.17
6802 9916 7.718272 TTTCATCTGCCTTTTCTTTGAAATG 57.282 32.000 0.00 0.00 29.45 2.32
6803 9917 5.786311 TCATCTGCCTTTTCTTTGAAATGG 58.214 37.500 16.01 16.01 0.00 3.16
6804 9918 5.305128 TCATCTGCCTTTTCTTTGAAATGGT 59.695 36.000 19.25 4.44 0.00 3.55
6805 9919 5.612725 TCTGCCTTTTCTTTGAAATGGTT 57.387 34.783 19.25 0.00 0.00 3.67
6806 9920 5.988287 TCTGCCTTTTCTTTGAAATGGTTT 58.012 33.333 19.25 0.00 0.00 3.27
6807 9921 6.413892 TCTGCCTTTTCTTTGAAATGGTTTT 58.586 32.000 19.25 0.00 0.00 2.43
6808 9922 6.883756 TCTGCCTTTTCTTTGAAATGGTTTTT 59.116 30.769 19.25 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 201 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
195 202 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
197 204 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
198 205 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
199 206 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
200 207 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
201 208 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
202 209 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
203 210 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
204 211 5.279406 CCATCTCTCTCTCTCTCTCTCTCTC 60.279 52.000 0.00 0.00 0.00 3.20
205 212 4.592351 CCATCTCTCTCTCTCTCTCTCTCT 59.408 50.000 0.00 0.00 0.00 3.10
206 213 4.802248 GCCATCTCTCTCTCTCTCTCTCTC 60.802 54.167 0.00 0.00 0.00 3.20
207 214 3.072184 GCCATCTCTCTCTCTCTCTCTCT 59.928 52.174 0.00 0.00 0.00 3.10
208 215 3.072184 AGCCATCTCTCTCTCTCTCTCTC 59.928 52.174 0.00 0.00 0.00 3.20
209 216 3.051581 AGCCATCTCTCTCTCTCTCTCT 58.948 50.000 0.00 0.00 0.00 3.10
211 218 3.051581 AGAGCCATCTCTCTCTCTCTCT 58.948 50.000 0.00 0.00 46.32 3.10
227 234 1.153429 ACCGGCGTCATTAAGAGCC 60.153 57.895 6.01 0.00 45.67 4.70
228 235 0.459585 TCACCGGCGTCATTAAGAGC 60.460 55.000 6.01 0.00 0.00 4.09
229 236 2.225068 ATCACCGGCGTCATTAAGAG 57.775 50.000 6.01 0.00 0.00 2.85
230 237 2.684001 AATCACCGGCGTCATTAAGA 57.316 45.000 6.01 0.00 0.00 2.10
231 238 4.025979 GTCTTAATCACCGGCGTCATTAAG 60.026 45.833 23.21 23.21 39.00 1.85
232 239 3.866910 GTCTTAATCACCGGCGTCATTAA 59.133 43.478 6.01 10.02 0.00 1.40
233 240 3.450578 GTCTTAATCACCGGCGTCATTA 58.549 45.455 6.01 2.27 0.00 1.90
251 258 2.229792 ACATGTGGTTGCAAATCGTCT 58.770 42.857 0.00 0.00 0.00 4.18
452 463 9.884636 TTGTCTAAATACATGCACTATTACAGT 57.115 29.630 0.00 0.00 38.32 3.55
458 469 9.060347 CATCCTTTGTCTAAATACATGCACTAT 57.940 33.333 0.00 0.00 0.00 2.12
515 526 0.038343 AATCAACACGCAACATGCCC 60.038 50.000 0.00 0.00 41.12 5.36
553 564 3.089874 TCGGGGATTCCTGGCTGG 61.090 66.667 3.65 3.65 39.90 4.85
563 589 2.735151 GATTTTTCCTTGGTCGGGGAT 58.265 47.619 0.00 0.00 0.00 3.85
564 590 1.612199 CGATTTTTCCTTGGTCGGGGA 60.612 52.381 0.00 0.00 0.00 4.81
565 591 0.808755 CGATTTTTCCTTGGTCGGGG 59.191 55.000 0.00 0.00 0.00 5.73
566 592 0.170339 GCGATTTTTCCTTGGTCGGG 59.830 55.000 0.00 0.00 33.26 5.14
567 593 0.170339 GGCGATTTTTCCTTGGTCGG 59.830 55.000 0.00 0.00 33.26 4.79
568 594 0.878416 TGGCGATTTTTCCTTGGTCG 59.122 50.000 0.00 0.00 35.56 4.79
569 595 1.402852 GCTGGCGATTTTTCCTTGGTC 60.403 52.381 0.00 0.00 0.00 4.02
570 596 0.603065 GCTGGCGATTTTTCCTTGGT 59.397 50.000 0.00 0.00 0.00 3.67
571 597 0.108662 GGCTGGCGATTTTTCCTTGG 60.109 55.000 0.00 0.00 0.00 3.61
572 598 0.456653 CGGCTGGCGATTTTTCCTTG 60.457 55.000 19.64 0.00 0.00 3.61
573 599 1.883021 CGGCTGGCGATTTTTCCTT 59.117 52.632 19.64 0.00 0.00 3.36
574 600 2.700773 GCGGCTGGCGATTTTTCCT 61.701 57.895 28.34 0.00 0.00 3.36
575 601 2.202610 GCGGCTGGCGATTTTTCC 60.203 61.111 28.34 3.45 0.00 3.13
576 602 2.202610 GGCGGCTGGCGATTTTTC 60.203 61.111 28.34 7.96 44.92 2.29
608 634 5.063944 CGCTGCTATTCTAACACAACTTGAT 59.936 40.000 0.00 0.00 0.00 2.57
619 645 1.119684 TCCTGCCGCTGCTATTCTAA 58.880 50.000 0.70 0.00 38.71 2.10
741 767 0.039527 GCTGCGTGGGTAGTTTTTGG 60.040 55.000 0.00 0.00 0.00 3.28
878 919 3.861263 GCGAGGGGTTTAAGCGCG 61.861 66.667 0.00 0.00 38.24 6.86
901 942 4.329545 CGGTGTGGTGGAGTGGGG 62.330 72.222 0.00 0.00 0.00 4.96
987 1034 4.554036 GCCATGGACCGAGGGAGC 62.554 72.222 18.40 0.00 0.00 4.70
1124 4144 1.371512 CGCAGATCTAGGAGCAGCG 60.372 63.158 7.98 7.98 45.63 5.18
1142 4162 0.617820 TAGGAAGAGGCCCAGGTGAC 60.618 60.000 0.00 0.00 0.00 3.67
1186 4215 1.671379 GGAACGAGAGGGCACAACC 60.671 63.158 0.00 0.00 37.93 3.77
1187 4216 3.967715 GGAACGAGAGGGCACAAC 58.032 61.111 0.00 0.00 0.00 3.32
1200 4229 1.445582 CGGTGGAGTAGCACGGAAC 60.446 63.158 0.00 0.00 0.00 3.62
1201 4230 0.968901 ATCGGTGGAGTAGCACGGAA 60.969 55.000 0.00 0.00 35.02 4.30
1202 4231 1.379443 ATCGGTGGAGTAGCACGGA 60.379 57.895 0.00 0.00 35.64 4.69
1203 4232 1.065928 GATCGGTGGAGTAGCACGG 59.934 63.158 0.00 0.00 0.00 4.94
1204 4233 0.248661 CAGATCGGTGGAGTAGCACG 60.249 60.000 0.00 0.00 0.00 5.34
1205 4234 1.103803 TCAGATCGGTGGAGTAGCAC 58.896 55.000 0.00 0.00 0.00 4.40
1206 4235 1.847328 TTCAGATCGGTGGAGTAGCA 58.153 50.000 0.00 0.00 0.00 3.49
1207 4236 3.460857 AATTCAGATCGGTGGAGTAGC 57.539 47.619 0.00 0.00 0.00 3.58
1208 4237 5.776173 AGTAATTCAGATCGGTGGAGTAG 57.224 43.478 0.00 0.00 0.00 2.57
1209 4238 6.262496 CAGTAGTAATTCAGATCGGTGGAGTA 59.738 42.308 0.00 0.00 0.00 2.59
1210 4239 5.067936 CAGTAGTAATTCAGATCGGTGGAGT 59.932 44.000 0.00 0.00 0.00 3.85
1211 4240 5.524284 CAGTAGTAATTCAGATCGGTGGAG 58.476 45.833 0.00 0.00 0.00 3.86
1212 4241 4.202121 GCAGTAGTAATTCAGATCGGTGGA 60.202 45.833 0.00 0.00 0.00 4.02
1213 4242 4.051922 GCAGTAGTAATTCAGATCGGTGG 58.948 47.826 0.00 0.00 0.00 4.61
1214 4243 3.731216 CGCAGTAGTAATTCAGATCGGTG 59.269 47.826 0.00 0.00 0.00 4.94
1215 4244 3.630769 TCGCAGTAGTAATTCAGATCGGT 59.369 43.478 0.00 0.00 0.00 4.69
1216 4245 3.975670 GTCGCAGTAGTAATTCAGATCGG 59.024 47.826 0.00 0.00 0.00 4.18
1217 4246 4.672862 CAGTCGCAGTAGTAATTCAGATCG 59.327 45.833 0.00 0.00 0.00 3.69
1218 4247 4.442733 GCAGTCGCAGTAGTAATTCAGATC 59.557 45.833 0.00 0.00 38.36 2.75
1219 4248 4.142160 TGCAGTCGCAGTAGTAATTCAGAT 60.142 41.667 0.00 0.00 45.36 2.90
1220 4249 3.192633 TGCAGTCGCAGTAGTAATTCAGA 59.807 43.478 0.00 0.00 45.36 3.27
1221 4250 3.511699 TGCAGTCGCAGTAGTAATTCAG 58.488 45.455 0.00 0.00 45.36 3.02
1222 4251 3.586100 TGCAGTCGCAGTAGTAATTCA 57.414 42.857 0.00 0.00 45.36 2.57
1242 4271 3.018149 GTGAGCTACCTACACTGCTAGT 58.982 50.000 0.00 0.00 35.76 2.57
1243 4272 3.283751 AGTGAGCTACCTACACTGCTAG 58.716 50.000 4.33 0.00 42.18 3.42
1244 4273 3.367646 AGTGAGCTACCTACACTGCTA 57.632 47.619 4.33 0.00 42.18 3.49
1245 4274 2.223803 AGTGAGCTACCTACACTGCT 57.776 50.000 4.33 0.00 42.18 4.24
1246 4275 2.611518 CAAGTGAGCTACCTACACTGC 58.388 52.381 5.83 0.00 42.81 4.40
1247 4276 2.675317 GCCAAGTGAGCTACCTACACTG 60.675 54.545 5.83 1.75 42.81 3.66
1248 4277 1.550976 GCCAAGTGAGCTACCTACACT 59.449 52.381 0.00 0.00 45.02 3.55
1249 4278 1.275291 TGCCAAGTGAGCTACCTACAC 59.725 52.381 0.00 0.00 35.15 2.90
1250 4279 1.275291 GTGCCAAGTGAGCTACCTACA 59.725 52.381 0.00 0.00 0.00 2.74
1251 4280 1.550976 AGTGCCAAGTGAGCTACCTAC 59.449 52.381 0.00 0.00 0.00 3.18
1252 4281 1.938585 AGTGCCAAGTGAGCTACCTA 58.061 50.000 0.00 0.00 0.00 3.08
1253 4282 1.938585 TAGTGCCAAGTGAGCTACCT 58.061 50.000 0.00 0.00 0.00 3.08
1254 4283 2.762535 TTAGTGCCAAGTGAGCTACC 57.237 50.000 0.00 0.00 0.00 3.18
1255 4284 4.606457 CAATTAGTGCCAAGTGAGCTAC 57.394 45.455 0.00 0.00 0.00 3.58
1268 4297 6.040247 TGTGGAGATAACTACGCAATTAGTG 58.960 40.000 0.00 0.00 43.44 2.74
1269 4298 6.216801 TGTGGAGATAACTACGCAATTAGT 57.783 37.500 0.00 0.00 43.44 2.24
1275 4304 4.081917 TGAATGTGTGGAGATAACTACGCA 60.082 41.667 0.00 0.00 44.08 5.24
1276 4305 4.267928 GTGAATGTGTGGAGATAACTACGC 59.732 45.833 0.00 0.00 37.92 4.42
1277 4306 5.407502 TGTGAATGTGTGGAGATAACTACG 58.592 41.667 0.00 0.00 0.00 3.51
1278 4307 6.631016 TCTGTGAATGTGTGGAGATAACTAC 58.369 40.000 0.00 0.00 0.00 2.73
1279 4308 6.437477 ACTCTGTGAATGTGTGGAGATAACTA 59.563 38.462 0.00 0.00 0.00 2.24
1280 4309 5.247110 ACTCTGTGAATGTGTGGAGATAACT 59.753 40.000 0.00 0.00 0.00 2.24
1281 4310 5.482908 ACTCTGTGAATGTGTGGAGATAAC 58.517 41.667 0.00 0.00 0.00 1.89
1282 4311 5.745312 ACTCTGTGAATGTGTGGAGATAA 57.255 39.130 0.00 0.00 0.00 1.75
1283 4312 5.163509 GCTACTCTGTGAATGTGTGGAGATA 60.164 44.000 0.00 0.00 0.00 1.98
1284 4313 4.382470 GCTACTCTGTGAATGTGTGGAGAT 60.382 45.833 0.00 0.00 0.00 2.75
1285 4314 3.056536 GCTACTCTGTGAATGTGTGGAGA 60.057 47.826 0.00 0.00 0.00 3.71
1286 4315 3.056250 AGCTACTCTGTGAATGTGTGGAG 60.056 47.826 0.00 0.00 0.00 3.86
1287 4316 2.899900 AGCTACTCTGTGAATGTGTGGA 59.100 45.455 0.00 0.00 0.00 4.02
1288 4317 3.325293 AGCTACTCTGTGAATGTGTGG 57.675 47.619 0.00 0.00 0.00 4.17
1289 4318 4.861462 CAGTAGCTACTCTGTGAATGTGTG 59.139 45.833 23.68 5.05 33.46 3.82
1290 4319 4.619394 GCAGTAGCTACTCTGTGAATGTGT 60.619 45.833 23.68 0.00 37.91 3.72
1291 4320 3.862267 GCAGTAGCTACTCTGTGAATGTG 59.138 47.826 23.68 10.35 37.91 3.21
1292 4321 3.118956 GGCAGTAGCTACTCTGTGAATGT 60.119 47.826 23.68 0.00 41.70 2.71
1293 4322 3.452474 GGCAGTAGCTACTCTGTGAATG 58.548 50.000 23.68 11.75 41.70 2.67
1294 4323 2.099921 CGGCAGTAGCTACTCTGTGAAT 59.900 50.000 23.68 0.00 41.70 2.57
1295 4324 1.472878 CGGCAGTAGCTACTCTGTGAA 59.527 52.381 23.68 0.00 41.70 3.18
1296 4325 1.095600 CGGCAGTAGCTACTCTGTGA 58.904 55.000 23.68 0.00 41.70 3.58
1297 4326 0.101399 CCGGCAGTAGCTACTCTGTG 59.899 60.000 23.68 14.25 41.70 3.66
1298 4327 0.323542 ACCGGCAGTAGCTACTCTGT 60.324 55.000 23.68 12.78 41.70 3.41
1299 4328 0.101399 CACCGGCAGTAGCTACTCTG 59.899 60.000 23.68 20.23 41.70 3.35
1300 4329 1.038130 CCACCGGCAGTAGCTACTCT 61.038 60.000 23.68 1.07 41.70 3.24
1301 4330 1.321074 ACCACCGGCAGTAGCTACTC 61.321 60.000 23.68 16.97 41.70 2.59
1302 4331 1.305046 ACCACCGGCAGTAGCTACT 60.305 57.895 20.95 20.95 41.70 2.57
1303 4332 1.141234 GACCACCGGCAGTAGCTAC 59.859 63.158 16.43 16.43 41.70 3.58
1304 4333 2.056223 GGACCACCGGCAGTAGCTA 61.056 63.158 0.00 0.00 41.70 3.32
1305 4334 3.391382 GGACCACCGGCAGTAGCT 61.391 66.667 0.00 0.00 41.70 3.32
1306 4335 3.665675 CTGGACCACCGGCAGTAGC 62.666 68.421 0.00 0.00 39.42 3.58
1307 4336 2.579201 CTGGACCACCGGCAGTAG 59.421 66.667 0.00 0.00 39.42 2.57
1308 4337 3.000819 CCTGGACCACCGGCAGTA 61.001 66.667 0.00 0.00 40.99 2.74
1309 4338 4.954118 TCCTGGACCACCGGCAGT 62.954 66.667 0.00 0.00 40.99 4.40
1349 4378 3.626028 AAGTTGCACGGACAATTTCTC 57.374 42.857 0.00 0.00 0.00 2.87
1436 4465 7.383687 TCATTTTTAGGACGAGATACACTGTT 58.616 34.615 0.00 0.00 0.00 3.16
1468 4503 2.208431 GAGATCCCAATGTGCTCTTCG 58.792 52.381 0.00 0.00 0.00 3.79
1473 4508 1.284198 AGCTTGAGATCCCAATGTGCT 59.716 47.619 0.00 0.00 0.00 4.40
1507 4543 0.179012 GTTGGGAGGAAACGGGACAA 60.179 55.000 0.00 0.00 0.00 3.18
1508 4544 1.452801 GTTGGGAGGAAACGGGACA 59.547 57.895 0.00 0.00 0.00 4.02
1509 4545 1.303074 GGTTGGGAGGAAACGGGAC 60.303 63.158 0.00 0.00 0.00 4.46
1510 4546 2.886134 CGGTTGGGAGGAAACGGGA 61.886 63.158 0.00 0.00 32.21 5.14
1518 4566 0.107831 TTGTCAGAACGGTTGGGAGG 59.892 55.000 0.00 0.00 0.00 4.30
1626 4686 4.006319 CTGCCTAAAGAAAGTCCTTGAGG 58.994 47.826 0.00 0.00 44.40 3.86
1638 4698 3.326588 TGCACTACTTTCCTGCCTAAAGA 59.673 43.478 8.90 0.00 37.38 2.52
1649 4709 4.991687 GCTAGTGGGATATGCACTACTTTC 59.008 45.833 0.00 0.00 0.00 2.62
1833 4893 9.868277 GGTGGATAAGAGATCTGACATTAATAG 57.132 37.037 0.00 0.00 0.00 1.73
1843 4903 5.508825 CGAGAAAGGGTGGATAAGAGATCTG 60.509 48.000 0.00 0.00 0.00 2.90
1873 4933 6.638610 CACAGGTCTAAGAGATCTCACATTT 58.361 40.000 24.39 12.17 32.23 2.32
1909 4973 2.783510 ACAAGTTCCAGGGAGAAAAGGA 59.216 45.455 0.00 0.00 0.00 3.36
1940 5004 8.831715 AAAATAAAAACAAATGAGCAGGTAGG 57.168 30.769 0.00 0.00 0.00 3.18
1957 5021 7.346751 ACCAGCAGAGTTCTGAAAAATAAAA 57.653 32.000 13.13 0.00 46.59 1.52
2040 5104 0.247736 AGTGGCACTCTCCAATCGTC 59.752 55.000 15.88 0.00 37.96 4.20
2061 5125 3.140325 ACTTTTCGGGCTTCATCTTCA 57.860 42.857 0.00 0.00 0.00 3.02
2176 5245 6.929049 CCATTTAAAGCAGAGATACCGATGTA 59.071 38.462 0.00 0.00 0.00 2.29
2177 5246 5.760253 CCATTTAAAGCAGAGATACCGATGT 59.240 40.000 0.00 0.00 0.00 3.06
2178 5247 5.760253 ACCATTTAAAGCAGAGATACCGATG 59.240 40.000 0.00 0.00 0.00 3.84
2179 5248 5.930135 ACCATTTAAAGCAGAGATACCGAT 58.070 37.500 0.00 0.00 0.00 4.18
2180 5249 5.353394 ACCATTTAAAGCAGAGATACCGA 57.647 39.130 0.00 0.00 0.00 4.69
2181 5250 6.436843 AAACCATTTAAAGCAGAGATACCG 57.563 37.500 0.00 0.00 0.00 4.02
2192 5261 9.311916 TGAGAAATGACACAAAACCATTTAAAG 57.688 29.630 0.00 0.00 39.67 1.85
2222 5291 3.157087 AGTCGGCACAAATCCATTTCTT 58.843 40.909 0.00 0.00 0.00 2.52
2224 5293 3.244976 CAAGTCGGCACAAATCCATTTC 58.755 45.455 0.00 0.00 0.00 2.17
2228 5297 0.950836 CACAAGTCGGCACAAATCCA 59.049 50.000 0.00 0.00 0.00 3.41
2270 5345 7.823745 ACTATTTGATAATGCCTTAACAGGG 57.176 36.000 0.00 0.00 41.21 4.45
2351 5426 7.134815 CACTGAGAGAGTTAACACCATTTTTG 58.865 38.462 8.61 0.00 29.75 2.44
2352 5427 6.828785 ACACTGAGAGAGTTAACACCATTTTT 59.171 34.615 8.61 0.00 29.75 1.94
2353 5428 6.357367 ACACTGAGAGAGTTAACACCATTTT 58.643 36.000 8.61 0.00 29.75 1.82
2354 5429 5.930135 ACACTGAGAGAGTTAACACCATTT 58.070 37.500 8.61 0.00 29.75 2.32
2355 5430 5.070446 TGACACTGAGAGAGTTAACACCATT 59.930 40.000 8.61 0.00 29.75 3.16
2356 5431 4.588951 TGACACTGAGAGAGTTAACACCAT 59.411 41.667 8.61 0.00 29.75 3.55
2357 5432 3.958147 TGACACTGAGAGAGTTAACACCA 59.042 43.478 8.61 0.00 29.75 4.17
2358 5433 4.551388 CTGACACTGAGAGAGTTAACACC 58.449 47.826 8.61 0.00 29.75 4.16
2359 5434 3.984633 GCTGACACTGAGAGAGTTAACAC 59.015 47.826 8.61 0.95 29.75 3.32
2360 5435 3.636764 TGCTGACACTGAGAGAGTTAACA 59.363 43.478 8.61 0.00 29.75 2.41
2361 5436 3.984633 GTGCTGACACTGAGAGAGTTAAC 59.015 47.826 0.00 0.00 43.85 2.01
2362 5437 4.244425 GTGCTGACACTGAGAGAGTTAA 57.756 45.455 0.00 0.00 43.85 2.01
2363 5438 3.924918 GTGCTGACACTGAGAGAGTTA 57.075 47.619 0.00 0.00 43.85 2.24
2364 5439 2.810439 GTGCTGACACTGAGAGAGTT 57.190 50.000 0.00 0.00 43.85 3.01
2787 5862 6.796705 AAACTAAAAGGAAGTATGGACACG 57.203 37.500 0.00 0.00 0.00 4.49
2831 5907 6.827251 GGTACCTTCCTCTGTTAAAATAAGGG 59.173 42.308 4.06 0.00 37.03 3.95
2932 6009 8.579850 AGAATGGATGTTTATAACAAGCTTGA 57.420 30.769 32.50 12.08 45.86 3.02
2940 6017 8.903820 ACTGCCTTAAGAATGGATGTTTATAAC 58.096 33.333 3.36 0.00 0.00 1.89
2972 6049 8.940952 GTTCTGCTAATCATTAAGACAGTTCTT 58.059 33.333 0.00 0.00 44.70 2.52
3020 6097 6.152379 TGCAATAGTCTGTAGAAGATATGCG 58.848 40.000 0.00 0.00 37.23 4.73
3024 6101 8.982091 ACTACTGCAATAGTCTGTAGAAGATA 57.018 34.615 1.08 0.00 40.89 1.98
3104 6181 8.976986 AAGAGTTGCATTTGAGAAATTCATAC 57.023 30.769 0.00 0.00 35.27 2.39
3213 6290 5.063438 TCAAACGAACTCTTGAGAACAGTTG 59.937 40.000 4.49 3.92 0.00 3.16
3222 6299 2.287915 GCAGCTTCAAACGAACTCTTGA 59.712 45.455 0.00 0.00 0.00 3.02
3292 6369 8.032952 TGACATAGCAATAAACATATAGCAGC 57.967 34.615 0.00 0.00 0.00 5.25
3453 6539 3.494048 GCTCTCAGATACCTGGTGAATGG 60.494 52.174 10.23 0.00 40.76 3.16
3474 6560 2.887152 ACATGTTCCAGAAACTCCAAGC 59.113 45.455 0.00 0.00 38.76 4.01
3478 6564 5.564848 GCCTTTAACATGTTCCAGAAACTCC 60.565 44.000 15.85 0.00 38.76 3.85
3605 6691 5.630896 TTGATACGCATAAGACGCTTTAC 57.369 39.130 0.00 0.00 0.00 2.01
3606 6692 6.037726 TCTTTGATACGCATAAGACGCTTTA 58.962 36.000 0.00 0.00 0.00 1.85
3690 6776 5.940595 AGTAACTGCTCGAAGTACTTACTG 58.059 41.667 8.42 1.87 36.50 2.74
3721 6807 6.149474 CGTAGGAAGTGAAACCATTTGAAGAT 59.851 38.462 0.00 0.00 37.80 2.40
4094 7201 5.596845 AGAGTTGTTGTTGTTGTTGTTGTT 58.403 33.333 0.00 0.00 0.00 2.83
4095 7202 5.195001 AGAGTTGTTGTTGTTGTTGTTGT 57.805 34.783 0.00 0.00 0.00 3.32
4096 7203 4.621034 GGAGAGTTGTTGTTGTTGTTGTTG 59.379 41.667 0.00 0.00 0.00 3.33
4097 7204 4.522789 AGGAGAGTTGTTGTTGTTGTTGTT 59.477 37.500 0.00 0.00 0.00 2.83
4098 7205 4.079253 AGGAGAGTTGTTGTTGTTGTTGT 58.921 39.130 0.00 0.00 0.00 3.32
4099 7206 4.082787 ACAGGAGAGTTGTTGTTGTTGTTG 60.083 41.667 0.00 0.00 0.00 3.33
4100 7207 4.079253 ACAGGAGAGTTGTTGTTGTTGTT 58.921 39.130 0.00 0.00 0.00 2.83
4101 7208 3.686016 ACAGGAGAGTTGTTGTTGTTGT 58.314 40.909 0.00 0.00 0.00 3.32
4102 7209 4.155826 TGAACAGGAGAGTTGTTGTTGTTG 59.844 41.667 0.00 0.00 38.78 3.33
4103 7210 4.331968 TGAACAGGAGAGTTGTTGTTGTT 58.668 39.130 0.00 0.00 38.78 2.83
4104 7211 3.950397 TGAACAGGAGAGTTGTTGTTGT 58.050 40.909 0.00 0.00 38.78 3.32
4105 7212 4.963276 TTGAACAGGAGAGTTGTTGTTG 57.037 40.909 0.00 0.00 38.78 3.33
4106 7213 5.010282 ACTTTGAACAGGAGAGTTGTTGTT 58.990 37.500 0.00 0.00 38.78 2.83
4107 7214 4.589908 ACTTTGAACAGGAGAGTTGTTGT 58.410 39.130 0.00 0.00 38.78 3.32
4108 7215 6.458342 GGTTACTTTGAACAGGAGAGTTGTTG 60.458 42.308 0.00 0.00 38.78 3.33
4171 7278 5.089970 ACTCATAGACTGCACAATTAGCA 57.910 39.130 4.86 4.86 40.19 3.49
4196 7303 8.792633 AGTCGTTTCTTCCAATATTTCATTTGA 58.207 29.630 0.00 0.00 0.00 2.69
4212 7319 1.301479 GTCCCCGCAGTCGTTTCTT 60.301 57.895 0.00 0.00 0.00 2.52
4217 7324 1.874345 CTTACTGTCCCCGCAGTCGT 61.874 60.000 1.75 0.00 45.63 4.34
4224 7331 1.433879 CGAGAGCTTACTGTCCCCG 59.566 63.158 0.00 0.00 32.57 5.73
4238 7345 3.141488 GCCTCCTTCTCCGCGAGA 61.141 66.667 8.23 5.85 36.86 4.04
4247 7354 2.591571 GCATTTCCATTGCCTCCTTC 57.408 50.000 0.00 0.00 33.95 3.46
4277 7384 2.614057 GGGGATCGAATACAGTGCTTTG 59.386 50.000 0.00 0.00 0.00 2.77
4285 7392 2.046292 TGCATGAGGGGATCGAATACA 58.954 47.619 0.00 0.00 0.00 2.29
4303 7410 1.884579 CTGCTATCCCACCAATCATGC 59.115 52.381 0.00 0.00 0.00 4.06
4338 7445 4.338118 TGGCACCGAAATCTGGAATATTTC 59.662 41.667 0.00 0.00 39.10 2.17
4342 7449 2.238646 AGTGGCACCGAAATCTGGAATA 59.761 45.455 15.27 0.00 0.00 1.75
4403 7510 2.205342 CCCCCTCCCTTCAACTGATAA 58.795 52.381 0.00 0.00 0.00 1.75
4423 7530 9.003658 TCTTCAAGGACAGATTCTGAAAATAAC 57.996 33.333 20.33 2.61 35.18 1.89
4426 7533 7.723172 AGTTCTTCAAGGACAGATTCTGAAAAT 59.277 33.333 20.33 0.00 35.18 1.82
4466 7573 9.618890 ACATGCTGTATCTGTATTCAAATTACT 57.381 29.630 0.00 0.00 0.00 2.24
4472 7579 4.576053 GCCACATGCTGTATCTGTATTCAA 59.424 41.667 0.00 0.00 36.87 2.69
4567 7674 3.262420 TGCCGAGTAAGAAGAATCTTGC 58.738 45.455 0.00 0.00 45.47 4.01
4573 7680 2.760634 TGCATGCCGAGTAAGAAGAA 57.239 45.000 16.68 0.00 0.00 2.52
4648 7755 1.030457 CCTTTGATGCTCCATCTGGC 58.970 55.000 6.74 0.00 41.06 4.85
4652 7759 3.005155 GGTATTGCCTTTGATGCTCCATC 59.995 47.826 0.00 0.00 40.88 3.51
4653 7760 2.961062 GGTATTGCCTTTGATGCTCCAT 59.039 45.455 0.00 0.00 0.00 3.41
5166 8273 3.002656 CGGCACCACTATCTTTGCTTATG 59.997 47.826 0.00 0.00 35.24 1.90
5369 8476 1.378646 GCACTGGGGCTAAGGGAAC 60.379 63.158 0.00 0.00 0.00 3.62
5400 8507 6.865205 GCATCTGTTAAACAGCAAAGAGAATT 59.135 34.615 0.00 0.00 45.54 2.17
5472 8579 4.478203 TCAAGATTGTCAATCCAAACCCA 58.522 39.130 19.80 0.00 38.71 4.51
5482 8589 2.108075 TCAGCCCCTTCAAGATTGTCAA 59.892 45.455 0.00 0.00 0.00 3.18
5588 8699 5.121380 AGCCAGGAAAATGATATGTCACT 57.879 39.130 0.00 0.00 37.14 3.41
5589 8700 5.504665 CGAAGCCAGGAAAATGATATGTCAC 60.505 44.000 0.00 0.00 37.14 3.67
5590 8701 4.576053 CGAAGCCAGGAAAATGATATGTCA 59.424 41.667 0.00 0.00 39.04 3.58
5591 8702 4.576463 ACGAAGCCAGGAAAATGATATGTC 59.424 41.667 0.00 0.00 0.00 3.06
5592 8703 4.526970 ACGAAGCCAGGAAAATGATATGT 58.473 39.130 0.00 0.00 0.00 2.29
5593 8704 5.505173 AACGAAGCCAGGAAAATGATATG 57.495 39.130 0.00 0.00 0.00 1.78
5594 8705 7.823745 AATAACGAAGCCAGGAAAATGATAT 57.176 32.000 0.00 0.00 0.00 1.63
5595 8706 7.639113 AAATAACGAAGCCAGGAAAATGATA 57.361 32.000 0.00 0.00 0.00 2.15
5596 8707 6.530019 AAATAACGAAGCCAGGAAAATGAT 57.470 33.333 0.00 0.00 0.00 2.45
5648 8759 0.929824 CACGTTCTTGTTTGCCTGCG 60.930 55.000 0.00 0.00 0.00 5.18
5843 8954 5.014858 CCCCAATATGATCTTCTCCCAATG 58.985 45.833 0.00 0.00 0.00 2.82
5847 8958 3.395941 ACACCCCAATATGATCTTCTCCC 59.604 47.826 0.00 0.00 0.00 4.30
5867 8978 3.901222 TCTGAATGTCTCCAGTTGGTACA 59.099 43.478 10.13 10.13 36.89 2.90
5897 9008 2.632377 CCAATCAACATCTAGCACCGT 58.368 47.619 0.00 0.00 0.00 4.83
5905 9016 0.322816 ACGCCTGCCAATCAACATCT 60.323 50.000 0.00 0.00 0.00 2.90
5937 9048 4.433615 CACATCCGCTACATCTTACACTT 58.566 43.478 0.00 0.00 0.00 3.16
5995 9106 9.959721 AAAAGAACTTGTATAGCTCCTGATAAA 57.040 29.630 0.00 0.00 0.00 1.40
6104 9215 8.506437 CAACAGATAACATACATTCACACAAGT 58.494 33.333 0.00 0.00 0.00 3.16
6119 9230 5.751509 GTCAGTACACACACAACAGATAACA 59.248 40.000 0.00 0.00 0.00 2.41
6139 9250 2.090658 CGGTCGAAAATTCAGTCGTCAG 59.909 50.000 0.00 0.00 38.41 3.51
6199 9311 7.971168 CACTTTGTGTTACCTGACATACAAAAA 59.029 33.333 0.00 0.00 30.24 1.94
6204 9316 5.985781 CACACTTTGTGTTACCTGACATAC 58.014 41.667 0.12 0.00 45.08 2.39
6336 9448 7.422399 TGAAAGAAAAACCTAAACGGATCAAG 58.578 34.615 0.00 0.00 36.31 3.02
6339 9451 6.362551 GCTTGAAAGAAAAACCTAAACGGATC 59.637 38.462 0.00 0.00 36.31 3.36
6341 9453 5.450826 GGCTTGAAAGAAAAACCTAAACGGA 60.451 40.000 0.00 0.00 36.31 4.69
6445 9558 7.599245 ACTCGTCGAAAACTTCTCTTTATGAAT 59.401 33.333 0.00 0.00 0.00 2.57
6455 9568 4.303086 TCAGAACTCGTCGAAAACTTCT 57.697 40.909 0.00 0.00 0.00 2.85
6546 9659 6.039382 GTCTTTCTAAAACACACCATGTCCTT 59.961 38.462 0.00 0.00 42.31 3.36
6634 9748 4.161876 TGTTTACTGGTCTTAGGCTACCA 58.838 43.478 7.39 7.39 43.47 3.25
6690 9804 3.574284 TTTGCTTGCTATTTGACGCAT 57.426 38.095 0.00 0.00 35.85 4.73
6693 9807 4.475028 TGTGATTTGCTTGCTATTTGACG 58.525 39.130 0.00 0.00 0.00 4.35
6704 9818 5.133221 GGTGTATCCCTATGTGATTTGCTT 58.867 41.667 0.00 0.00 0.00 3.91
6739 9853 2.428890 CAGCAAAAACCAGGGTGTTACA 59.571 45.455 0.00 0.00 0.00 2.41
6740 9854 2.223947 CCAGCAAAAACCAGGGTGTTAC 60.224 50.000 0.00 0.00 0.00 2.50
6741 9855 2.035632 CCAGCAAAAACCAGGGTGTTA 58.964 47.619 0.00 0.00 0.00 2.41
6742 9856 0.829990 CCAGCAAAAACCAGGGTGTT 59.170 50.000 0.00 0.00 0.00 3.32
6743 9857 0.325203 ACCAGCAAAAACCAGGGTGT 60.325 50.000 0.00 0.00 0.00 4.16
6744 9858 0.829990 AACCAGCAAAAACCAGGGTG 59.170 50.000 0.00 0.00 0.00 4.61
6745 9859 1.578897 AAACCAGCAAAAACCAGGGT 58.421 45.000 0.00 0.00 0.00 4.34
6746 9860 2.682352 CAAAAACCAGCAAAAACCAGGG 59.318 45.455 0.00 0.00 0.00 4.45
6747 9861 3.342719 ACAAAAACCAGCAAAAACCAGG 58.657 40.909 0.00 0.00 0.00 4.45
6748 9862 3.999663 TGACAAAAACCAGCAAAAACCAG 59.000 39.130 0.00 0.00 0.00 4.00
6749 9863 4.008074 TGACAAAAACCAGCAAAAACCA 57.992 36.364 0.00 0.00 0.00 3.67
6750 9864 4.633565 TGATGACAAAAACCAGCAAAAACC 59.366 37.500 0.00 0.00 0.00 3.27
6751 9865 5.793026 TGATGACAAAAACCAGCAAAAAC 57.207 34.783 0.00 0.00 0.00 2.43
6752 9866 7.271511 AGTATGATGACAAAAACCAGCAAAAA 58.728 30.769 0.00 0.00 32.19 1.94
6753 9867 6.815089 AGTATGATGACAAAAACCAGCAAAA 58.185 32.000 0.00 0.00 32.19 2.44
6754 9868 6.403866 AGTATGATGACAAAAACCAGCAAA 57.596 33.333 0.00 0.00 32.19 3.68
6755 9869 6.403866 AAGTATGATGACAAAAACCAGCAA 57.596 33.333 0.00 0.00 32.19 3.91
6756 9870 6.403866 AAAGTATGATGACAAAAACCAGCA 57.596 33.333 0.00 0.00 33.01 4.41
6757 9871 6.922957 TGAAAAGTATGATGACAAAAACCAGC 59.077 34.615 0.00 0.00 0.00 4.85
6758 9872 9.132521 GATGAAAAGTATGATGACAAAAACCAG 57.867 33.333 0.00 0.00 0.00 4.00
6759 9873 8.859090 AGATGAAAAGTATGATGACAAAAACCA 58.141 29.630 0.00 0.00 0.00 3.67
6760 9874 9.132521 CAGATGAAAAGTATGATGACAAAAACC 57.867 33.333 0.00 0.00 0.00 3.27
6761 9875 8.642020 GCAGATGAAAAGTATGATGACAAAAAC 58.358 33.333 0.00 0.00 0.00 2.43
6762 9876 7.814107 GGCAGATGAAAAGTATGATGACAAAAA 59.186 33.333 0.00 0.00 0.00 1.94
6763 9877 7.177216 AGGCAGATGAAAAGTATGATGACAAAA 59.823 33.333 0.00 0.00 0.00 2.44
6764 9878 6.660521 AGGCAGATGAAAAGTATGATGACAAA 59.339 34.615 0.00 0.00 0.00 2.83
6765 9879 6.182627 AGGCAGATGAAAAGTATGATGACAA 58.817 36.000 0.00 0.00 0.00 3.18
6766 9880 5.748402 AGGCAGATGAAAAGTATGATGACA 58.252 37.500 0.00 0.00 0.00 3.58
6767 9881 6.690194 AAGGCAGATGAAAAGTATGATGAC 57.310 37.500 0.00 0.00 0.00 3.06
6768 9882 7.613022 AGAAAAGGCAGATGAAAAGTATGATGA 59.387 33.333 0.00 0.00 0.00 2.92
6769 9883 7.769220 AGAAAAGGCAGATGAAAAGTATGATG 58.231 34.615 0.00 0.00 0.00 3.07
6770 9884 7.951347 AGAAAAGGCAGATGAAAAGTATGAT 57.049 32.000 0.00 0.00 0.00 2.45
6771 9885 7.765695 AAGAAAAGGCAGATGAAAAGTATGA 57.234 32.000 0.00 0.00 0.00 2.15
6772 9886 8.084073 TCAAAGAAAAGGCAGATGAAAAGTATG 58.916 33.333 0.00 0.00 0.00 2.39
6773 9887 8.181904 TCAAAGAAAAGGCAGATGAAAAGTAT 57.818 30.769 0.00 0.00 0.00 2.12
6774 9888 7.581213 TCAAAGAAAAGGCAGATGAAAAGTA 57.419 32.000 0.00 0.00 0.00 2.24
6775 9889 6.469782 TCAAAGAAAAGGCAGATGAAAAGT 57.530 33.333 0.00 0.00 0.00 2.66
6776 9890 7.775397 TTTCAAAGAAAAGGCAGATGAAAAG 57.225 32.000 0.00 0.00 33.74 2.27
6777 9891 7.227116 CCATTTCAAAGAAAAGGCAGATGAAAA 59.773 33.333 1.41 0.00 38.38 2.29
6778 9892 6.707161 CCATTTCAAAGAAAAGGCAGATGAAA 59.293 34.615 1.41 0.00 38.98 2.69
6779 9893 6.183360 ACCATTTCAAAGAAAAGGCAGATGAA 60.183 34.615 12.21 0.00 0.00 2.57
6780 9894 5.305128 ACCATTTCAAAGAAAAGGCAGATGA 59.695 36.000 12.21 0.00 0.00 2.92
6781 9895 5.544650 ACCATTTCAAAGAAAAGGCAGATG 58.455 37.500 12.21 0.00 0.00 2.90
6782 9896 5.813513 ACCATTTCAAAGAAAAGGCAGAT 57.186 34.783 12.21 0.00 0.00 2.90
6783 9897 5.612725 AACCATTTCAAAGAAAAGGCAGA 57.387 34.783 12.21 0.00 0.00 4.26
6784 9898 6.682423 AAAACCATTTCAAAGAAAAGGCAG 57.318 33.333 12.21 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.