Multiple sequence alignment - TraesCS6B01G270100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G270100 chr6B 100.000 4089 0 0 1 4089 486222536 486226624 0.000000e+00 7552.0
1 TraesCS6B01G270100 chr6B 85.354 198 27 2 2123 2318 539727743 539727546 1.930000e-48 204.0
2 TraesCS6B01G270100 chr6D 94.264 3818 134 33 310 4066 334229519 334225726 0.000000e+00 5758.0
3 TraesCS6B01G270100 chr6D 87.584 298 36 1 1 298 435710873 435711169 1.090000e-90 344.0
4 TraesCS6B01G270100 chr6D 89.441 161 17 0 2158 2318 358326162 358326002 1.930000e-48 204.0
5 TraesCS6B01G270100 chr6A 92.928 3846 129 50 310 4089 473577394 473573626 0.000000e+00 5463.0
6 TraesCS6B01G270100 chr6A 85.859 198 26 2 2123 2318 500083818 500083621 4.140000e-50 209.0
7 TraesCS6B01G270100 chr5D 88.776 490 30 13 685 1163 344617647 344618122 9.860000e-161 577.0
8 TraesCS6B01G270100 chr5D 84.566 311 25 9 858 1163 344616580 344616872 1.860000e-73 287.0
9 TraesCS6B01G270100 chr2A 79.264 598 86 23 2129 2708 656240947 656241524 2.310000e-102 383.0
10 TraesCS6B01G270100 chr2A 84.043 94 10 3 3957 4046 656242730 656242822 7.280000e-13 86.1
11 TraesCS6B01G270100 chr2D 91.273 275 24 0 7 281 372702810 372702536 3.860000e-100 375.0
12 TraesCS6B01G270100 chr2D 78.763 598 89 22 2129 2708 512686870 512687447 2.320000e-97 366.0
13 TraesCS6B01G270100 chr2D 88.612 281 31 1 1 281 190600018 190600297 1.410000e-89 340.0
14 TraesCS6B01G270100 chr2D 90.000 260 26 0 1 260 490819972 490820231 1.820000e-88 337.0
15 TraesCS6B01G270100 chr2D 81.915 94 12 3 3957 4046 512688661 512688753 1.580000e-09 75.0
16 TraesCS6B01G270100 chr4D 89.855 276 28 0 7 282 459064845 459064570 5.030000e-94 355.0
17 TraesCS6B01G270100 chr2B 78.523 596 88 26 2129 2708 602763481 602764052 5.030000e-94 355.0
18 TraesCS6B01G270100 chr2B 83.333 102 12 3 3957 4054 602765264 602765364 5.630000e-14 89.8
19 TraesCS6B01G270100 chr7D 88.968 281 31 0 1 281 566127376 566127656 8.410000e-92 348.0
20 TraesCS6B01G270100 chr4A 89.455 275 29 0 7 281 648472970 648472696 8.410000e-92 348.0
21 TraesCS6B01G270100 chr1D 87.797 295 30 5 7 298 27902913 27902622 1.410000e-89 340.0
22 TraesCS6B01G270100 chr7A 85.714 315 38 5 7 315 641817128 641816815 3.940000e-85 326.0
23 TraesCS6B01G270100 chr5A 91.391 151 11 2 2163 2312 594771013 594771162 5.360000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G270100 chr6B 486222536 486226624 4088 False 7552.00 7552 100.0000 1 4089 1 chr6B.!!$F1 4088
1 TraesCS6B01G270100 chr6D 334225726 334229519 3793 True 5758.00 5758 94.2640 310 4066 1 chr6D.!!$R1 3756
2 TraesCS6B01G270100 chr6A 473573626 473577394 3768 True 5463.00 5463 92.9280 310 4089 1 chr6A.!!$R1 3779
3 TraesCS6B01G270100 chr5D 344616580 344618122 1542 False 432.00 577 86.6710 685 1163 2 chr5D.!!$F1 478
4 TraesCS6B01G270100 chr2A 656240947 656242822 1875 False 234.55 383 81.6535 2129 4046 2 chr2A.!!$F1 1917
5 TraesCS6B01G270100 chr2D 512686870 512688753 1883 False 220.50 366 80.3390 2129 4046 2 chr2D.!!$F3 1917
6 TraesCS6B01G270100 chr2B 602763481 602765364 1883 False 222.40 355 80.9280 2129 4054 2 chr2B.!!$F1 1925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 304 0.036306 AAGACGCCAGATTTCCGGTT 59.964 50.0 0.00 0.0 0.00 4.44 F
906 1301 0.184933 TCTAGCTGCTCCTCCTCCTC 59.815 60.0 4.91 0.0 0.00 3.71 F
907 1302 0.185901 CTAGCTGCTCCTCCTCCTCT 59.814 60.0 4.91 0.0 0.00 3.69 F
2737 3209 0.251474 AGCATCAGCAACACCACCAT 60.251 50.0 0.00 0.0 45.49 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1306 1706 0.589708 CACAGATGGCCATACATGCG 59.410 55.0 20.84 8.40 0.00 4.73 R
2737 3209 0.101040 GTTGTTGTTGCTGCTGCTGA 59.899 50.0 17.00 2.73 40.48 4.26 R
2885 3372 0.754472 AAGTCCTCGAACGGGAACAA 59.246 50.0 0.00 0.00 34.35 2.83 R
3910 4803 0.250234 GTGCTGACAGGTATGCAGGA 59.750 55.0 4.26 0.00 36.03 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.866061 CCAACTCGATCCGTACTGCG 60.866 60.000 0.00 0.00 40.95 5.18
22 23 0.179171 CAACTCGATCCGTACTGCGT 60.179 55.000 0.00 0.00 39.32 5.24
23 24 0.098376 AACTCGATCCGTACTGCGTC 59.902 55.000 0.00 0.00 39.32 5.19
24 25 0.743701 ACTCGATCCGTACTGCGTCT 60.744 55.000 0.00 0.00 39.32 4.18
26 27 0.376152 TCGATCCGTACTGCGTCTTC 59.624 55.000 0.00 0.00 39.32 2.87
27 28 0.924363 CGATCCGTACTGCGTCTTCG 60.924 60.000 0.00 0.00 39.32 3.79
28 29 0.376152 GATCCGTACTGCGTCTTCGA 59.624 55.000 0.00 0.00 39.71 3.71
29 30 0.098376 ATCCGTACTGCGTCTTCGAC 59.902 55.000 0.00 0.00 39.71 4.20
30 31 1.513586 CCGTACTGCGTCTTCGACC 60.514 63.158 0.00 0.00 39.71 4.79
31 32 1.862147 CGTACTGCGTCTTCGACCG 60.862 63.158 0.00 0.00 39.71 4.79
32 33 1.513586 GTACTGCGTCTTCGACCGG 60.514 63.158 0.00 0.00 39.71 5.28
33 34 1.968017 TACTGCGTCTTCGACCGGT 60.968 57.895 6.92 6.92 39.71 5.28
34 35 0.673333 TACTGCGTCTTCGACCGGTA 60.673 55.000 7.34 0.00 39.71 4.02
37 38 1.211190 GCGTCTTCGACCGGTACTT 59.789 57.895 7.34 0.00 39.71 2.24
39 40 0.179179 CGTCTTCGACCGGTACTTCC 60.179 60.000 7.34 0.00 39.71 3.46
57 58 1.738099 CGTGAGAAGGACGGCAAGG 60.738 63.158 0.00 0.00 33.08 3.61
58 59 1.376037 GTGAGAAGGACGGCAAGGG 60.376 63.158 0.00 0.00 0.00 3.95
88 89 3.136123 CAAGGGCAGCCGTGGATG 61.136 66.667 7.59 0.00 34.24 3.51
89 90 3.329889 AAGGGCAGCCGTGGATGA 61.330 61.111 7.59 0.00 32.62 2.92
90 91 2.905996 AAGGGCAGCCGTGGATGAA 61.906 57.895 7.59 0.00 32.62 2.57
91 92 3.134127 GGGCAGCCGTGGATGAAC 61.134 66.667 8.61 0.00 32.62 3.18
93 94 2.109126 GGCAGCCGTGGATGAACTC 61.109 63.158 8.61 0.00 32.62 3.01
94 95 2.109126 GCAGCCGTGGATGAACTCC 61.109 63.158 8.61 0.00 45.19 3.85
111 112 6.009589 TGAACTCCATCATAACCAAACATGT 58.990 36.000 0.00 0.00 0.00 3.21
112 113 6.150976 TGAACTCCATCATAACCAAACATGTC 59.849 38.462 0.00 0.00 0.00 3.06
114 115 6.009589 ACTCCATCATAACCAAACATGTCAA 58.990 36.000 0.00 0.00 0.00 3.18
115 116 6.493115 ACTCCATCATAACCAAACATGTCAAA 59.507 34.615 0.00 0.00 0.00 2.69
116 117 7.178983 ACTCCATCATAACCAAACATGTCAAAT 59.821 33.333 0.00 0.00 0.00 2.32
117 118 7.905265 TCCATCATAACCAAACATGTCAAATT 58.095 30.769 0.00 0.00 0.00 1.82
119 120 9.001542 CCATCATAACCAAACATGTCAAATTTT 57.998 29.630 0.00 0.00 0.00 1.82
120 121 9.814507 CATCATAACCAAACATGTCAAATTTTG 57.185 29.630 0.00 2.59 0.00 2.44
121 122 9.775854 ATCATAACCAAACATGTCAAATTTTGA 57.224 25.926 7.74 7.74 37.33 2.69
126 127 8.816640 ACCAAACATGTCAAATTTTGATAGTC 57.183 30.769 14.54 3.27 42.47 2.59
127 128 7.872483 ACCAAACATGTCAAATTTTGATAGTCC 59.128 33.333 14.54 2.93 42.47 3.85
132 133 6.435430 TGTCAAATTTTGATAGTCCGATGG 57.565 37.500 14.54 0.00 42.47 3.51
133 134 5.163663 TGTCAAATTTTGATAGTCCGATGGC 60.164 40.000 14.54 0.00 42.47 4.40
134 135 4.946772 TCAAATTTTGATAGTCCGATGGCA 59.053 37.500 7.74 0.00 34.08 4.92
135 136 5.593909 TCAAATTTTGATAGTCCGATGGCAT 59.406 36.000 7.74 0.00 34.08 4.40
136 137 5.443185 AATTTTGATAGTCCGATGGCATG 57.557 39.130 3.81 0.00 0.00 4.06
137 138 3.558931 TTTGATAGTCCGATGGCATGT 57.441 42.857 3.81 0.00 0.00 3.21
138 139 3.558931 TTGATAGTCCGATGGCATGTT 57.441 42.857 3.81 0.00 0.00 2.71
139 140 3.558931 TGATAGTCCGATGGCATGTTT 57.441 42.857 3.81 0.00 0.00 2.83
140 141 4.681074 TGATAGTCCGATGGCATGTTTA 57.319 40.909 3.81 0.00 0.00 2.01
142 143 4.100963 TGATAGTCCGATGGCATGTTTAGT 59.899 41.667 3.81 0.00 0.00 2.24
143 144 2.632377 AGTCCGATGGCATGTTTAGTG 58.368 47.619 3.81 0.00 0.00 2.74
144 145 2.027192 AGTCCGATGGCATGTTTAGTGT 60.027 45.455 3.81 0.00 0.00 3.55
145 146 3.196901 AGTCCGATGGCATGTTTAGTGTA 59.803 43.478 3.81 0.00 0.00 2.90
146 147 3.555956 GTCCGATGGCATGTTTAGTGTAG 59.444 47.826 3.81 0.00 0.00 2.74
147 148 3.196901 TCCGATGGCATGTTTAGTGTAGT 59.803 43.478 3.81 0.00 0.00 2.73
149 150 3.932710 CGATGGCATGTTTAGTGTAGTGT 59.067 43.478 3.81 0.00 0.00 3.55
150 151 4.201714 CGATGGCATGTTTAGTGTAGTGTG 60.202 45.833 3.81 0.00 0.00 3.82
152 153 4.905429 TGGCATGTTTAGTGTAGTGTGAT 58.095 39.130 0.00 0.00 0.00 3.06
154 155 4.094887 GGCATGTTTAGTGTAGTGTGATGG 59.905 45.833 0.00 0.00 0.00 3.51
155 156 4.935205 GCATGTTTAGTGTAGTGTGATGGA 59.065 41.667 0.00 0.00 0.00 3.41
157 158 5.801531 TGTTTAGTGTAGTGTGATGGAGT 57.198 39.130 0.00 0.00 0.00 3.85
158 159 6.904463 TGTTTAGTGTAGTGTGATGGAGTA 57.096 37.500 0.00 0.00 0.00 2.59
159 160 6.920817 TGTTTAGTGTAGTGTGATGGAGTAG 58.079 40.000 0.00 0.00 0.00 2.57
160 161 5.578005 TTAGTGTAGTGTGATGGAGTAGC 57.422 43.478 0.00 0.00 0.00 3.58
162 163 1.749063 TGTAGTGTGATGGAGTAGCCG 59.251 52.381 0.00 0.00 40.66 5.52
163 164 1.067212 GTAGTGTGATGGAGTAGCCGG 59.933 57.143 0.00 0.00 40.66 6.13
164 165 0.324368 AGTGTGATGGAGTAGCCGGA 60.324 55.000 5.05 0.00 40.66 5.14
165 166 0.179108 GTGTGATGGAGTAGCCGGAC 60.179 60.000 5.05 0.00 40.66 4.79
166 167 1.065928 GTGATGGAGTAGCCGGACG 59.934 63.158 5.05 0.00 40.66 4.79
168 169 0.467474 TGATGGAGTAGCCGGACGAT 60.467 55.000 5.05 0.00 40.66 3.73
169 170 0.039074 GATGGAGTAGCCGGACGATG 60.039 60.000 5.05 0.00 40.66 3.84
170 171 2.027751 GGAGTAGCCGGACGATGC 59.972 66.667 5.05 0.00 0.00 3.91
171 172 2.353607 GAGTAGCCGGACGATGCG 60.354 66.667 5.05 0.00 0.00 4.73
174 175 3.445687 TAGCCGGACGATGCGTGT 61.446 61.111 5.05 0.00 41.37 4.49
183 184 4.178255 GATGCGTGTGCGTCGACG 62.178 66.667 32.57 32.57 46.39 5.12
186 187 2.872925 GCGTGTGCGTCGACGTAT 60.873 61.111 35.48 0.00 42.22 3.06
187 188 2.430942 GCGTGTGCGTCGACGTATT 61.431 57.895 35.48 0.00 42.22 1.89
188 189 1.937196 GCGTGTGCGTCGACGTATTT 61.937 55.000 35.48 0.00 42.22 1.40
190 191 0.780002 GTGTGCGTCGACGTATTTGT 59.220 50.000 35.48 0.00 42.22 2.83
191 192 1.978097 GTGTGCGTCGACGTATTTGTA 59.022 47.619 35.48 15.71 42.22 2.41
193 194 2.595095 TGTGCGTCGACGTATTTGTATG 59.405 45.455 35.48 7.57 42.22 2.39
194 195 2.595536 GTGCGTCGACGTATTTGTATGT 59.404 45.455 35.48 0.00 42.22 2.29
195 196 2.595095 TGCGTCGACGTATTTGTATGTG 59.405 45.455 35.48 6.84 42.22 3.21
196 197 2.595536 GCGTCGACGTATTTGTATGTGT 59.404 45.455 35.48 0.00 42.22 3.72
197 198 3.059834 GCGTCGACGTATTTGTATGTGTT 59.940 43.478 35.48 0.00 42.22 3.32
198 199 4.433283 GCGTCGACGTATTTGTATGTGTTT 60.433 41.667 35.48 0.00 42.22 2.83
199 200 5.004578 CGTCGACGTATTTGTATGTGTTTG 58.995 41.667 29.08 0.00 34.11 2.93
200 201 5.387649 CGTCGACGTATTTGTATGTGTTTGT 60.388 40.000 29.08 0.00 34.11 2.83
203 204 7.629465 GTCGACGTATTTGTATGTGTTTGTATG 59.371 37.037 0.00 0.00 0.00 2.39
204 205 7.328982 TCGACGTATTTGTATGTGTTTGTATGT 59.671 33.333 0.00 0.00 0.00 2.29
205 206 8.585436 CGACGTATTTGTATGTGTTTGTATGTA 58.415 33.333 0.00 0.00 0.00 2.29
233 234 9.498176 TTGAGATATGATAATTGATGTGTGAGG 57.502 33.333 0.00 0.00 0.00 3.86
235 236 9.887629 GAGATATGATAATTGATGTGTGAGGAT 57.112 33.333 0.00 0.00 0.00 3.24
244 245 8.529424 AATTGATGTGTGAGGATATGAATTGT 57.471 30.769 0.00 0.00 0.00 2.71
245 246 9.631257 AATTGATGTGTGAGGATATGAATTGTA 57.369 29.630 0.00 0.00 0.00 2.41
246 247 9.803507 ATTGATGTGTGAGGATATGAATTGTAT 57.196 29.630 0.00 0.00 0.00 2.29
247 248 9.631257 TTGATGTGTGAGGATATGAATTGTATT 57.369 29.630 0.00 0.00 0.00 1.89
248 249 9.631257 TGATGTGTGAGGATATGAATTGTATTT 57.369 29.630 0.00 0.00 0.00 1.40
269 270 3.678056 TTTGAGGCGTGTCTAATGAGT 57.322 42.857 0.00 0.00 0.00 3.41
270 271 2.654749 TGAGGCGTGTCTAATGAGTG 57.345 50.000 0.00 0.00 0.00 3.51
271 272 1.281899 GAGGCGTGTCTAATGAGTGC 58.718 55.000 0.00 0.00 0.00 4.40
273 274 1.090052 GGCGTGTCTAATGAGTGCCC 61.090 60.000 0.00 0.00 35.01 5.36
274 275 1.421410 GCGTGTCTAATGAGTGCCCG 61.421 60.000 0.00 0.00 0.00 6.13
275 276 1.421410 CGTGTCTAATGAGTGCCCGC 61.421 60.000 0.00 0.00 0.00 6.13
276 277 1.153647 TGTCTAATGAGTGCCCGCG 60.154 57.895 0.00 0.00 0.00 6.46
278 279 2.055633 TCTAATGAGTGCCCGCGGA 61.056 57.895 30.73 3.89 0.00 5.54
279 280 1.883084 CTAATGAGTGCCCGCGGAC 60.883 63.158 30.73 18.13 0.00 4.79
280 281 3.709880 TAATGAGTGCCCGCGGACG 62.710 63.158 30.73 12.70 39.67 4.79
284 285 3.919973 GAGTGCCCGCGGACGTTTA 62.920 63.158 30.73 0.00 37.70 2.01
285 286 3.043121 GTGCCCGCGGACGTTTAA 61.043 61.111 30.73 0.00 37.70 1.52
286 287 2.739287 TGCCCGCGGACGTTTAAG 60.739 61.111 30.73 8.26 37.70 1.85
287 288 2.432972 GCCCGCGGACGTTTAAGA 60.433 61.111 30.73 0.00 37.70 2.10
299 300 3.385079 CGTTTAAGACGCCAGATTTCC 57.615 47.619 0.00 0.00 45.86 3.13
302 303 0.899720 TAAGACGCCAGATTTCCGGT 59.100 50.000 0.00 0.00 0.00 5.28
303 304 0.036306 AAGACGCCAGATTTCCGGTT 59.964 50.000 0.00 0.00 0.00 4.44
304 305 0.673644 AGACGCCAGATTTCCGGTTG 60.674 55.000 0.00 0.00 0.00 3.77
305 306 0.953960 GACGCCAGATTTCCGGTTGT 60.954 55.000 0.00 0.00 0.00 3.32
307 308 1.006832 CGCCAGATTTCCGGTTGTAG 58.993 55.000 0.00 0.00 0.00 2.74
308 309 1.404986 CGCCAGATTTCCGGTTGTAGA 60.405 52.381 0.00 0.00 0.00 2.59
309 310 2.741878 CGCCAGATTTCCGGTTGTAGAT 60.742 50.000 0.00 0.00 0.00 1.98
310 311 2.614057 GCCAGATTTCCGGTTGTAGATG 59.386 50.000 0.00 0.00 0.00 2.90
311 312 2.614057 CCAGATTTCCGGTTGTAGATGC 59.386 50.000 0.00 0.00 0.00 3.91
312 313 3.535561 CAGATTTCCGGTTGTAGATGCT 58.464 45.455 0.00 0.00 0.00 3.79
313 314 3.557595 CAGATTTCCGGTTGTAGATGCTC 59.442 47.826 0.00 0.00 0.00 4.26
315 316 3.695830 TTTCCGGTTGTAGATGCTCTT 57.304 42.857 0.00 0.00 0.00 2.85
316 317 4.811969 TTTCCGGTTGTAGATGCTCTTA 57.188 40.909 0.00 0.00 0.00 2.10
318 319 4.811969 TCCGGTTGTAGATGCTCTTAAA 57.188 40.909 0.00 0.00 0.00 1.52
319 320 5.353394 TCCGGTTGTAGATGCTCTTAAAT 57.647 39.130 0.00 0.00 0.00 1.40
320 321 5.741011 TCCGGTTGTAGATGCTCTTAAATT 58.259 37.500 0.00 0.00 0.00 1.82
321 322 6.177610 TCCGGTTGTAGATGCTCTTAAATTT 58.822 36.000 0.00 0.00 0.00 1.82
323 324 7.279313 TCCGGTTGTAGATGCTCTTAAATTTAC 59.721 37.037 0.00 0.00 0.00 2.01
376 377 2.432628 GTCCAAGCCGGTCAGTCG 60.433 66.667 1.90 0.00 35.57 4.18
408 416 1.160137 GCTCACACCCACTGCTAAAG 58.840 55.000 0.00 0.00 0.00 1.85
434 442 4.215109 AGAAACACAATGGTTAGTTGCCT 58.785 39.130 0.00 0.00 0.00 4.75
867 1262 5.725551 AGACATTCCTTCCTCTCTCTCTA 57.274 43.478 0.00 0.00 0.00 2.43
878 1273 0.375454 CTCTCTCTACCGTGTGCTCG 59.625 60.000 0.00 0.00 0.00 5.03
905 1300 0.859760 ATCTAGCTGCTCCTCCTCCT 59.140 55.000 4.91 0.00 0.00 3.69
906 1301 0.184933 TCTAGCTGCTCCTCCTCCTC 59.815 60.000 4.91 0.00 0.00 3.71
907 1302 0.185901 CTAGCTGCTCCTCCTCCTCT 59.814 60.000 4.91 0.00 0.00 3.69
930 1325 3.839432 CCCCGCTCCTCGTTCTCC 61.839 72.222 0.00 0.00 36.19 3.71
1036 1431 1.098050 GCACCAGGTAAGCTGATTGG 58.902 55.000 0.00 3.57 35.07 3.16
1180 1580 1.609072 GTGTTCTTGCCTTCTTGGTCC 59.391 52.381 0.00 0.00 38.35 4.46
1188 1588 4.112634 TGCCTTCTTGGTCCACTATTTT 57.887 40.909 0.00 0.00 38.35 1.82
1215 1615 1.377202 TGCCCTTGATCTTCACGCC 60.377 57.895 0.00 0.00 0.00 5.68
1224 1624 2.185310 ATCTTCACGCCCGCTTTCCT 62.185 55.000 0.00 0.00 0.00 3.36
1252 1652 2.377628 TATGACGATCTTGGGCGCCC 62.378 60.000 39.40 39.40 0.00 6.13
1306 1706 2.010145 TGTTTCTGGCGCAGATCTAC 57.990 50.000 10.83 9.35 40.39 2.59
1323 1723 2.071540 CTACGCATGTATGGCCATCTG 58.928 52.381 24.80 18.80 0.00 2.90
1337 1737 2.760092 GCCATCTGTGTCTCTCTTCTCT 59.240 50.000 0.00 0.00 0.00 3.10
1670 2080 0.744281 GAGTTTTGTGTGGTGGTGGG 59.256 55.000 0.00 0.00 0.00 4.61
1705 2115 6.525629 TCTCTCATCTTTTCGTCTCCTTTTT 58.474 36.000 0.00 0.00 0.00 1.94
1737 2147 4.864704 TTTTTCATTCTCCTTTTCCCCG 57.135 40.909 0.00 0.00 0.00 5.73
1833 2243 4.026052 TCAGGCTCTCATAGTCATGTCAA 58.974 43.478 0.00 0.00 33.57 3.18
1862 2273 6.211986 CCATCCATTTTCCCATATACAGCATT 59.788 38.462 0.00 0.00 0.00 3.56
2338 2771 1.930908 GATCGTCGTCCTCGGTGGTT 61.931 60.000 0.00 0.00 37.69 3.67
2349 2782 4.974989 GGTGGTTTCGTCCGCGGT 62.975 66.667 27.15 0.00 38.71 5.68
2464 2918 2.359975 CTCAACCTGGCGTTCCCC 60.360 66.667 0.00 0.00 29.93 4.81
2734 3203 1.080974 GCAGCATCAGCAACACCAC 60.081 57.895 0.00 0.00 45.49 4.16
2737 3209 0.251474 AGCATCAGCAACACCACCAT 60.251 50.000 0.00 0.00 45.49 3.55
2749 3221 1.974875 CCACCATCAGCAGCAGCAA 60.975 57.895 3.17 0.00 45.49 3.91
2752 3224 0.824595 ACCATCAGCAGCAGCAACAA 60.825 50.000 3.17 0.00 45.49 2.83
2767 3239 0.817013 AACAACAACACCACCAGCAG 59.183 50.000 0.00 0.00 0.00 4.24
2776 3248 3.062466 CACCAGCAGCAGCAGCAT 61.062 61.111 12.92 0.00 45.49 3.79
2785 3257 0.959372 AGCAGCAGCATCAGGTTCAC 60.959 55.000 3.17 0.00 45.49 3.18
2803 3275 0.321653 ACAACATGCTCGGGTTCTCC 60.322 55.000 0.00 0.00 0.00 3.71
2885 3372 2.746277 GCGCAACGGGAAGGATGT 60.746 61.111 0.30 0.00 0.00 3.06
3095 3630 0.806102 CAGTTCGTGGTAGGATGGCG 60.806 60.000 0.00 0.00 0.00 5.69
3396 3981 5.819379 CCAATTGAATCTCTCATTTCCGAGA 59.181 40.000 7.12 0.00 39.74 4.04
3445 4030 6.148315 TGAAGTTGTTCATGTAGAATCTGCAG 59.852 38.462 7.63 7.63 37.79 4.41
3471 4057 4.130857 TGCACCTTCTTTTTGTACATCGA 58.869 39.130 0.00 0.00 0.00 3.59
3483 4069 3.453424 TGTACATCGATCGGGTTGAATG 58.547 45.455 16.41 12.54 0.00 2.67
3573 4460 4.439153 GCAGTATGTTGGTGAATGGATGTG 60.439 45.833 0.00 0.00 39.31 3.21
3592 4483 3.640498 TGTGGCAAAGGTTCATTCAATGA 59.360 39.130 0.00 0.00 37.55 2.57
3610 4501 5.243060 TCAATGAAGGATTGGCATCATCATC 59.757 40.000 1.32 0.00 41.76 2.92
3726 4619 0.250252 TCGGTTTGCTGTGCTGATCA 60.250 50.000 0.00 0.00 0.00 2.92
3742 4635 0.400670 ATCAAGAGGGGAGGCCTACC 60.401 60.000 28.02 28.02 0.00 3.18
3894 4787 8.680903 AGACATATTTTCCTCATCATTCACAAC 58.319 33.333 0.00 0.00 0.00 3.32
3926 4819 2.382882 TCTCTCCTGCATACCTGTCAG 58.617 52.381 0.00 0.00 0.00 3.51
3934 4827 4.132336 CTGCATACCTGTCAGCACATATT 58.868 43.478 0.00 0.00 32.87 1.28
3937 4830 5.527214 TGCATACCTGTCAGCACATATTTAC 59.473 40.000 0.00 0.00 31.05 2.01
4063 4959 1.134371 GCGGTAGGAGGAGAAAAGCAT 60.134 52.381 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067212 GCAGTACGGATCGAGTTGGAT 59.933 52.381 0.00 0.00 0.00 3.41
3 4 2.566997 CGCAGTACGGATCGAGTTG 58.433 57.895 0.00 0.00 38.44 3.16
39 40 1.738099 CCTTGCCGTCCTTCTCACG 60.738 63.158 0.00 0.00 36.99 4.35
40 41 1.376037 CCCTTGCCGTCCTTCTCAC 60.376 63.158 0.00 0.00 0.00 3.51
41 42 3.068881 CCCTTGCCGTCCTTCTCA 58.931 61.111 0.00 0.00 0.00 3.27
42 43 2.436824 GCCCTTGCCGTCCTTCTC 60.437 66.667 0.00 0.00 0.00 2.87
43 44 4.394712 CGCCCTTGCCGTCCTTCT 62.395 66.667 0.00 0.00 0.00 2.85
72 73 2.905996 TTCATCCACGGCTGCCCTT 61.906 57.895 14.12 0.00 0.00 3.95
73 74 3.329889 TTCATCCACGGCTGCCCT 61.330 61.111 14.12 0.00 0.00 5.19
74 75 3.134127 GTTCATCCACGGCTGCCC 61.134 66.667 14.12 0.00 0.00 5.36
75 76 2.045926 AGTTCATCCACGGCTGCC 60.046 61.111 9.11 9.11 0.00 4.85
86 87 6.664816 ACATGTTTGGTTATGATGGAGTTCAT 59.335 34.615 0.00 0.00 39.60 2.57
87 88 6.009589 ACATGTTTGGTTATGATGGAGTTCA 58.990 36.000 0.00 0.00 0.00 3.18
88 89 6.150976 TGACATGTTTGGTTATGATGGAGTTC 59.849 38.462 0.00 0.00 0.00 3.01
89 90 6.009589 TGACATGTTTGGTTATGATGGAGTT 58.990 36.000 0.00 0.00 0.00 3.01
90 91 5.569355 TGACATGTTTGGTTATGATGGAGT 58.431 37.500 0.00 0.00 0.00 3.85
91 92 6.513806 TTGACATGTTTGGTTATGATGGAG 57.486 37.500 0.00 0.00 0.00 3.86
93 94 8.550710 AAATTTGACATGTTTGGTTATGATGG 57.449 30.769 0.00 0.00 0.00 3.51
94 95 9.814507 CAAAATTTGACATGTTTGGTTATGATG 57.185 29.630 0.00 0.00 0.00 3.07
95 96 9.775854 TCAAAATTTGACATGTTTGGTTATGAT 57.224 25.926 4.03 0.00 34.08 2.45
101 102 7.872483 GGACTATCAAAATTTGACATGTTTGGT 59.128 33.333 10.91 2.20 43.48 3.67
102 103 7.062138 CGGACTATCAAAATTTGACATGTTTGG 59.938 37.037 10.91 0.00 43.48 3.28
103 104 7.807433 TCGGACTATCAAAATTTGACATGTTTG 59.193 33.333 10.91 0.00 43.48 2.93
104 105 7.881142 TCGGACTATCAAAATTTGACATGTTT 58.119 30.769 10.91 0.00 43.48 2.83
105 106 7.447374 TCGGACTATCAAAATTTGACATGTT 57.553 32.000 10.91 0.00 43.48 2.71
107 108 6.914215 CCATCGGACTATCAAAATTTGACATG 59.086 38.462 10.91 6.71 43.48 3.21
108 109 6.460123 GCCATCGGACTATCAAAATTTGACAT 60.460 38.462 10.91 0.00 43.48 3.06
111 112 4.946772 TGCCATCGGACTATCAAAATTTGA 59.053 37.500 11.10 11.10 45.01 2.69
112 113 5.247507 TGCCATCGGACTATCAAAATTTG 57.752 39.130 0.00 0.00 0.00 2.32
114 115 4.889409 ACATGCCATCGGACTATCAAAATT 59.111 37.500 0.00 0.00 0.00 1.82
115 116 4.464008 ACATGCCATCGGACTATCAAAAT 58.536 39.130 0.00 0.00 0.00 1.82
116 117 3.884895 ACATGCCATCGGACTATCAAAA 58.115 40.909 0.00 0.00 0.00 2.44
117 118 3.558931 ACATGCCATCGGACTATCAAA 57.441 42.857 0.00 0.00 0.00 2.69
119 120 3.558931 AAACATGCCATCGGACTATCA 57.441 42.857 0.00 0.00 0.00 2.15
120 121 4.449068 CACTAAACATGCCATCGGACTATC 59.551 45.833 0.00 0.00 0.00 2.08
121 122 4.141711 ACACTAAACATGCCATCGGACTAT 60.142 41.667 0.00 0.00 0.00 2.12
123 124 2.027192 ACACTAAACATGCCATCGGACT 60.027 45.455 0.00 0.00 0.00 3.85
125 126 2.779755 ACACTAAACATGCCATCGGA 57.220 45.000 0.00 0.00 0.00 4.55
126 127 3.309682 CACTACACTAAACATGCCATCGG 59.690 47.826 0.00 0.00 0.00 4.18
127 128 3.932710 ACACTACACTAAACATGCCATCG 59.067 43.478 0.00 0.00 0.00 3.84
132 133 4.935205 TCCATCACACTACACTAAACATGC 59.065 41.667 0.00 0.00 0.00 4.06
133 134 6.166279 ACTCCATCACACTACACTAAACATG 58.834 40.000 0.00 0.00 0.00 3.21
134 135 6.360370 ACTCCATCACACTACACTAAACAT 57.640 37.500 0.00 0.00 0.00 2.71
135 136 5.801531 ACTCCATCACACTACACTAAACA 57.198 39.130 0.00 0.00 0.00 2.83
136 137 5.805994 GCTACTCCATCACACTACACTAAAC 59.194 44.000 0.00 0.00 0.00 2.01
137 138 5.105473 GGCTACTCCATCACACTACACTAAA 60.105 44.000 0.00 0.00 34.01 1.85
138 139 4.401519 GGCTACTCCATCACACTACACTAA 59.598 45.833 0.00 0.00 34.01 2.24
139 140 3.952323 GGCTACTCCATCACACTACACTA 59.048 47.826 0.00 0.00 34.01 2.74
140 141 2.761208 GGCTACTCCATCACACTACACT 59.239 50.000 0.00 0.00 34.01 3.55
142 143 1.749063 CGGCTACTCCATCACACTACA 59.251 52.381 0.00 0.00 34.01 2.74
143 144 1.067212 CCGGCTACTCCATCACACTAC 59.933 57.143 0.00 0.00 34.01 2.73
144 145 1.064240 TCCGGCTACTCCATCACACTA 60.064 52.381 0.00 0.00 34.01 2.74
145 146 0.324368 TCCGGCTACTCCATCACACT 60.324 55.000 0.00 0.00 34.01 3.55
146 147 0.179108 GTCCGGCTACTCCATCACAC 60.179 60.000 0.00 0.00 34.01 3.82
147 148 1.663379 CGTCCGGCTACTCCATCACA 61.663 60.000 0.00 0.00 34.01 3.58
149 150 0.467474 ATCGTCCGGCTACTCCATCA 60.467 55.000 0.00 0.00 34.01 3.07
150 151 0.039074 CATCGTCCGGCTACTCCATC 60.039 60.000 0.00 0.00 34.01 3.51
152 153 2.782222 GCATCGTCCGGCTACTCCA 61.782 63.158 0.00 0.00 34.01 3.86
154 155 2.353607 CGCATCGTCCGGCTACTC 60.354 66.667 0.00 0.00 0.00 2.59
155 156 3.138798 ACGCATCGTCCGGCTACT 61.139 61.111 0.00 0.00 33.69 2.57
157 158 3.445687 ACACGCATCGTCCGGCTA 61.446 61.111 0.00 0.00 38.32 3.93
162 163 3.838795 GACGCACACGCATCGTCC 61.839 66.667 8.32 0.00 44.62 4.79
163 164 4.178255 CGACGCACACGCATCGTC 62.178 66.667 9.17 9.17 46.23 4.20
164 165 4.693525 TCGACGCACACGCATCGT 62.694 61.111 2.77 0.00 45.53 3.73
165 166 4.178255 GTCGACGCACACGCATCG 62.178 66.667 0.00 0.00 45.53 3.84
166 167 4.178255 CGTCGACGCACACGCATC 62.178 66.667 26.59 0.00 45.53 3.91
168 169 3.598228 ATACGTCGACGCACACGCA 62.598 57.895 35.92 13.72 45.53 5.24
169 170 1.937196 AAATACGTCGACGCACACGC 61.937 55.000 35.92 0.00 45.53 5.34
170 171 0.246222 CAAATACGTCGACGCACACG 60.246 55.000 35.92 18.92 44.43 4.49
171 172 0.780002 ACAAATACGTCGACGCACAC 59.220 50.000 35.92 0.00 44.43 3.82
174 175 2.595095 CACATACAAATACGTCGACGCA 59.405 45.455 35.92 25.96 44.43 5.24
177 178 5.908106 ACAAACACATACAAATACGTCGAC 58.092 37.500 5.18 5.18 0.00 4.20
178 179 7.328982 ACATACAAACACATACAAATACGTCGA 59.671 33.333 0.00 0.00 0.00 4.20
207 208 9.498176 CCTCACACATCAATTATCATATCTCAA 57.502 33.333 0.00 0.00 0.00 3.02
208 209 8.873144 TCCTCACACATCAATTATCATATCTCA 58.127 33.333 0.00 0.00 0.00 3.27
209 210 9.887629 ATCCTCACACATCAATTATCATATCTC 57.112 33.333 0.00 0.00 0.00 2.75
218 219 9.631257 ACAATTCATATCCTCACACATCAATTA 57.369 29.630 0.00 0.00 0.00 1.40
219 220 8.529424 ACAATTCATATCCTCACACATCAATT 57.471 30.769 0.00 0.00 0.00 2.32
220 221 9.803507 ATACAATTCATATCCTCACACATCAAT 57.196 29.630 0.00 0.00 0.00 2.57
221 222 9.631257 AATACAATTCATATCCTCACACATCAA 57.369 29.630 0.00 0.00 0.00 2.57
247 248 4.213270 CACTCATTAGACACGCCTCAAAAA 59.787 41.667 0.00 0.00 0.00 1.94
248 249 3.745975 CACTCATTAGACACGCCTCAAAA 59.254 43.478 0.00 0.00 0.00 2.44
249 250 3.325870 CACTCATTAGACACGCCTCAAA 58.674 45.455 0.00 0.00 0.00 2.69
250 251 2.930887 GCACTCATTAGACACGCCTCAA 60.931 50.000 0.00 0.00 0.00 3.02
251 252 1.404181 GCACTCATTAGACACGCCTCA 60.404 52.381 0.00 0.00 0.00 3.86
252 253 1.281899 GCACTCATTAGACACGCCTC 58.718 55.000 0.00 0.00 0.00 4.70
253 254 0.108138 GGCACTCATTAGACACGCCT 60.108 55.000 0.00 0.00 35.17 5.52
257 258 1.421410 CGCGGGCACTCATTAGACAC 61.421 60.000 0.00 0.00 0.00 3.67
258 259 1.153647 CGCGGGCACTCATTAGACA 60.154 57.895 0.00 0.00 0.00 3.41
260 261 2.055633 TCCGCGGGCACTCATTAGA 61.056 57.895 27.83 0.00 0.00 2.10
261 262 1.883084 GTCCGCGGGCACTCATTAG 60.883 63.158 27.96 0.00 0.00 1.73
262 263 2.185867 GTCCGCGGGCACTCATTA 59.814 61.111 27.96 0.00 0.00 1.90
266 267 3.919973 TAAACGTCCGCGGGCACTC 62.920 63.158 31.65 12.22 43.45 3.51
267 268 3.518419 TTAAACGTCCGCGGGCACT 62.518 57.895 31.65 13.32 43.45 4.40
268 269 3.018840 CTTAAACGTCCGCGGGCAC 62.019 63.158 31.65 18.90 43.45 5.01
269 270 2.739287 CTTAAACGTCCGCGGGCA 60.739 61.111 31.65 7.06 43.45 5.36
270 271 2.432972 TCTTAAACGTCCGCGGGC 60.433 61.111 27.83 25.32 43.45 6.13
271 272 2.438954 CGTCTTAAACGTCCGCGGG 61.439 63.158 27.83 13.23 46.42 6.13
280 281 2.095372 CCGGAAATCTGGCGTCTTAAAC 59.905 50.000 0.00 0.00 35.28 2.01
281 282 2.289819 ACCGGAAATCTGGCGTCTTAAA 60.290 45.455 9.46 0.00 46.43 1.52
284 285 0.036306 AACCGGAAATCTGGCGTCTT 59.964 50.000 9.46 0.00 46.43 3.01
285 286 0.673644 CAACCGGAAATCTGGCGTCT 60.674 55.000 9.46 0.00 46.43 4.18
286 287 0.953960 ACAACCGGAAATCTGGCGTC 60.954 55.000 9.46 0.00 46.43 5.19
287 288 0.322322 TACAACCGGAAATCTGGCGT 59.678 50.000 9.46 8.39 46.43 5.68
289 290 2.396590 TCTACAACCGGAAATCTGGC 57.603 50.000 9.46 0.00 46.43 4.85
291 292 3.535561 AGCATCTACAACCGGAAATCTG 58.464 45.455 9.46 0.00 0.00 2.90
292 293 3.798202 GAGCATCTACAACCGGAAATCT 58.202 45.455 9.46 0.00 0.00 2.40
307 308 9.535878 AGCAGTACTAGTAAATTTAAGAGCATC 57.464 33.333 3.61 0.00 0.00 3.91
316 317 8.765219 CGATTGCATAGCAGTACTAGTAAATTT 58.235 33.333 3.61 0.00 40.61 1.82
318 319 7.658261 TCGATTGCATAGCAGTACTAGTAAAT 58.342 34.615 3.61 0.00 40.61 1.40
319 320 7.034685 TCGATTGCATAGCAGTACTAGTAAA 57.965 36.000 3.61 0.00 40.61 2.01
320 321 6.628919 TCGATTGCATAGCAGTACTAGTAA 57.371 37.500 3.61 0.00 40.61 2.24
321 322 6.628919 TTCGATTGCATAGCAGTACTAGTA 57.371 37.500 0.00 0.00 40.61 1.82
323 324 5.108217 CGTTTCGATTGCATAGCAGTACTAG 60.108 44.000 0.00 0.00 40.61 2.57
326 327 3.550275 TCGTTTCGATTGCATAGCAGTAC 59.450 43.478 0.00 0.00 40.61 2.73
329 330 3.544834 CCTTCGTTTCGATTGCATAGCAG 60.545 47.826 0.00 0.00 40.61 4.24
339 340 1.204941 CTCCACCTCCTTCGTTTCGAT 59.795 52.381 0.00 0.00 35.23 3.59
408 416 6.371389 GCAACTAACCATTGTGTTTCTAGTC 58.629 40.000 0.00 0.00 0.00 2.59
473 481 0.104120 CTGATCGGCGTTATGGTCCA 59.896 55.000 6.85 0.00 0.00 4.02
629 638 1.595929 TTGTCCTTCGTTGGTCGCC 60.596 57.895 0.00 0.00 39.67 5.54
867 1262 2.976350 TCGTCTCGAGCACACGGT 60.976 61.111 20.74 0.00 34.24 4.83
878 1273 1.001815 GGAGCAGCTAGATGTCGTCTC 60.002 57.143 10.15 7.27 38.42 3.36
930 1325 2.202756 GCGCTACGAACAGGAGGG 60.203 66.667 0.00 0.00 45.79 4.30
1137 1537 2.351157 GCAGCAAGATCCACAAGAACAC 60.351 50.000 0.00 0.00 0.00 3.32
1188 1588 1.906574 AGATCAAGGGCACGGTAGAAA 59.093 47.619 0.00 0.00 0.00 2.52
1215 1615 2.638480 TATCCCATCAAGGAAAGCGG 57.362 50.000 0.00 0.00 40.04 5.52
1224 1624 4.263025 CCCAAGATCGTCATATCCCATCAA 60.263 45.833 0.00 0.00 0.00 2.57
1252 1652 1.807142 GCGGTTCCCAAGAAGAGAAAG 59.193 52.381 0.00 0.00 30.91 2.62
1306 1706 0.589708 CACAGATGGCCATACATGCG 59.410 55.000 20.84 8.40 0.00 4.73
1323 1723 2.525105 AGGGGAGAGAAGAGAGACAC 57.475 55.000 0.00 0.00 0.00 3.67
1337 1737 1.258445 GCGGACAGAAGAGAAGGGGA 61.258 60.000 0.00 0.00 0.00 4.81
1670 2080 3.971245 AGATGAGAGAGAAACACACCC 57.029 47.619 0.00 0.00 0.00 4.61
1737 2147 6.378710 GGATACAAAGTGAGATTAAAGGGC 57.621 41.667 0.00 0.00 0.00 5.19
1833 2243 2.967898 ATGGGAAAATGGATGGGGTT 57.032 45.000 0.00 0.00 0.00 4.11
1880 2307 4.764823 ACAAAGCCAAATCCTCGATGTTAA 59.235 37.500 0.00 0.00 0.00 2.01
2034 2467 3.382832 CTTCGGTCCCAGACGGCT 61.383 66.667 0.00 0.00 33.78 5.52
2314 2747 1.134580 ACCGAGGACGACGATCTCTTA 60.135 52.381 0.00 0.00 42.66 2.10
2734 3203 0.388134 GTTGTTGCTGCTGCTGATGG 60.388 55.000 17.00 0.00 40.48 3.51
2737 3209 0.101040 GTTGTTGTTGCTGCTGCTGA 59.899 50.000 17.00 2.73 40.48 4.26
2749 3221 1.666209 GCTGCTGGTGGTGTTGTTGT 61.666 55.000 0.00 0.00 0.00 3.32
2752 3224 1.825191 CTGCTGCTGGTGGTGTTGT 60.825 57.895 0.00 0.00 0.00 3.32
2767 3239 1.239296 TGTGAACCTGATGCTGCTGC 61.239 55.000 8.89 8.89 40.20 5.25
2776 3248 1.511850 CGAGCATGTTGTGAACCTGA 58.488 50.000 0.00 0.00 0.00 3.86
2785 3257 2.471255 GGAGAACCCGAGCATGTTG 58.529 57.895 0.00 0.00 0.00 3.33
2803 3275 3.077556 CCTCCTCCCGTGTCCAGG 61.078 72.222 0.00 0.00 0.00 4.45
2885 3372 0.754472 AAGTCCTCGAACGGGAACAA 59.246 50.000 0.00 0.00 34.35 2.83
2925 3412 1.687612 CCACTTGCACCTCCTCCAT 59.312 57.895 0.00 0.00 0.00 3.41
3077 3612 0.968901 TCGCCATCCTACCACGAACT 60.969 55.000 0.00 0.00 0.00 3.01
3396 3981 7.448161 TCATATGAAATTCACACAAGGAACACT 59.552 33.333 1.98 0.00 0.00 3.55
3445 4030 3.572255 TGTACAAAAAGAAGGTGCATCCC 59.428 43.478 0.00 0.00 36.75 3.85
3471 4057 3.627395 TCTACTTGCATTCAACCCGAT 57.373 42.857 0.00 0.00 0.00 4.18
3483 4069 2.754552 TGACCAATGCCAATCTACTTGC 59.245 45.455 0.00 0.00 33.20 4.01
3545 4240 0.322456 TCACCAACATACTGCCTGGC 60.322 55.000 12.87 12.87 29.34 4.85
3573 4460 4.021192 TCCTTCATTGAATGAACCTTTGCC 60.021 41.667 16.04 0.00 43.84 4.52
3592 4483 2.158564 ACGGATGATGATGCCAATCCTT 60.159 45.455 0.00 0.00 31.15 3.36
3594 4485 1.808945 GACGGATGATGATGCCAATCC 59.191 52.381 0.00 0.00 31.15 3.01
3610 4501 1.067060 TGAGTGTTGACTGACTGACGG 59.933 52.381 0.00 0.00 30.16 4.79
3726 4619 0.563672 CTAGGTAGGCCTCCCCTCTT 59.436 60.000 23.68 3.21 45.64 2.85
3742 4635 2.960819 AGAAAACACGCCTGCTACTAG 58.039 47.619 0.00 0.00 0.00 2.57
3743 4636 3.064207 CAAGAAAACACGCCTGCTACTA 58.936 45.455 0.00 0.00 0.00 1.82
3878 4771 7.943079 AAATACATGTTGTGAATGATGAGGA 57.057 32.000 2.30 0.00 0.00 3.71
3908 4801 0.826715 GCTGACAGGTATGCAGGAGA 59.173 55.000 4.26 0.00 33.69 3.71
3909 4802 0.538584 TGCTGACAGGTATGCAGGAG 59.461 55.000 4.26 0.00 33.69 3.69
3910 4803 0.250234 GTGCTGACAGGTATGCAGGA 59.750 55.000 4.26 0.00 36.03 3.86
4063 4959 6.325028 ACATATTCTCTCTTTCTCCATTCCGA 59.675 38.462 0.00 0.00 0.00 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.