Multiple sequence alignment - TraesCS6B01G269900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G269900 chr6B 100.000 6403 0 0 1 6403 485868372 485874774 0.000000e+00 11825.0
1 TraesCS6B01G269900 chr6B 88.750 160 14 4 134 291 199762268 199762425 6.550000e-45 193.0
2 TraesCS6B01G269900 chr6B 78.652 89 13 6 4075 4162 478760086 478760003 3.000000e-03 54.7
3 TraesCS6B01G269900 chr6A 94.505 3840 143 19 1871 5679 473746658 473742856 0.000000e+00 5860.0
4 TraesCS6B01G269900 chr6A 96.241 931 15 3 872 1797 473747580 473746665 0.000000e+00 1507.0
5 TraesCS6B01G269900 chr6A 86.408 721 47 12 5723 6401 473742856 473742145 0.000000e+00 741.0
6 TraesCS6B01G269900 chr6A 86.851 289 35 3 571 858 90742999 90742713 2.880000e-83 320.0
7 TraesCS6B01G269900 chr6A 85.284 299 36 4 568 859 65135719 65136016 1.040000e-77 302.0
8 TraesCS6B01G269900 chr6A 86.475 244 24 2 284 527 473747838 473747604 6.370000e-65 259.0
9 TraesCS6B01G269900 chr6A 90.566 106 9 1 28 132 473747927 473747822 8.660000e-29 139.0
10 TraesCS6B01G269900 chr6A 100.000 31 0 0 5886 5916 483540437 483540467 2.490000e-04 58.4
11 TraesCS6B01G269900 chr6D 95.209 2484 82 16 1871 4329 334346383 334343912 0.000000e+00 3893.0
12 TraesCS6B01G269900 chr6D 91.104 1821 84 25 4346 6109 334343857 334342058 0.000000e+00 2394.0
13 TraesCS6B01G269900 chr6D 96.771 929 16 4 883 1797 334347318 334346390 0.000000e+00 1537.0
14 TraesCS6B01G269900 chr6D 88.930 271 17 4 6144 6401 334342065 334341795 8.010000e-84 322.0
15 TraesCS6B01G269900 chr6D 93.919 148 8 1 284 430 334362751 334362604 8.360000e-54 222.0
16 TraesCS6B01G269900 chr6D 91.946 149 11 1 328 476 431404760 431404907 2.340000e-49 207.0
17 TraesCS6B01G269900 chr6D 94.697 132 6 1 1 132 334362865 334362735 3.030000e-48 204.0
18 TraesCS6B01G269900 chr6D 91.275 149 12 1 328 476 431401879 431402026 1.090000e-47 202.0
19 TraesCS6B01G269900 chr6D 88.272 162 13 5 134 291 110880836 110880995 8.470000e-44 189.0
20 TraesCS6B01G269900 chr6D 100.000 31 0 0 5886 5916 343029259 343029289 2.490000e-04 58.4
21 TraesCS6B01G269900 chr7B 88.925 307 21 3 567 861 721591349 721591044 3.650000e-97 366.0
22 TraesCS6B01G269900 chr7B 88.925 307 18 6 567 859 413595118 413594814 1.310000e-96 364.0
23 TraesCS6B01G269900 chr1A 85.274 292 39 4 569 858 293707448 293707737 1.350000e-76 298.0
24 TraesCS6B01G269900 chr1A 89.542 153 16 0 133 285 104918855 104919007 1.820000e-45 195.0
25 TraesCS6B01G269900 chr1A 73.016 189 40 10 3973 4155 343611174 343610991 8.970000e-04 56.5
26 TraesCS6B01G269900 chr4D 88.000 250 17 3 625 861 21685637 21685388 3.780000e-72 283.0
27 TraesCS6B01G269900 chr4D 85.714 175 22 3 116 289 489780508 489780680 1.420000e-41 182.0
28 TraesCS6B01G269900 chr4D 75.694 144 24 9 5775 5916 93712213 93712347 1.930000e-05 62.1
29 TraesCS6B01G269900 chr5B 84.483 290 40 5 567 854 622553033 622552747 1.360000e-71 281.0
30 TraesCS6B01G269900 chr5B 89.241 158 13 3 131 286 529277220 529277065 1.820000e-45 195.0
31 TraesCS6B01G269900 chr5B 87.273 165 15 3 134 298 585262823 585262665 3.940000e-42 183.0
32 TraesCS6B01G269900 chr5B 100.000 28 0 0 3996 4023 587865558 587865585 1.200000e-02 52.8
33 TraesCS6B01G269900 chr3D 83.117 308 43 9 558 862 96443658 96443357 8.180000e-69 272.0
34 TraesCS6B01G269900 chr3D 82.727 110 17 2 5756 5863 43244786 43244895 5.280000e-16 97.1
35 TraesCS6B01G269900 chr3D 87.931 58 5 2 4102 4158 104014578 104014522 4.140000e-07 67.6
36 TraesCS6B01G269900 chr4A 83.219 292 45 4 569 859 84531241 84531529 1.370000e-66 265.0
37 TraesCS6B01G269900 chr4A 88.679 53 4 2 4085 4136 478341102 478341153 5.360000e-06 63.9
38 TraesCS6B01G269900 chr4A 97.059 34 1 0 4509 4542 725990054 725990087 2.490000e-04 58.4
39 TraesCS6B01G269900 chr7A 86.752 234 25 5 568 798 126033397 126033167 8.240000e-64 255.0
40 TraesCS6B01G269900 chrUn 92.466 146 10 1 331 476 412877138 412877282 2.340000e-49 207.0
41 TraesCS6B01G269900 chrUn 91.275 149 12 1 328 476 444994085 444994232 1.090000e-47 202.0
42 TraesCS6B01G269900 chr5D 92.466 146 10 1 331 476 240133008 240133152 2.340000e-49 207.0
43 TraesCS6B01G269900 chr5D 92.466 146 10 1 331 476 449153848 449153704 2.340000e-49 207.0
44 TraesCS6B01G269900 chr5D 89.172 157 16 1 134 290 76972625 76972470 1.820000e-45 195.0
45 TraesCS6B01G269900 chr5D 87.931 58 5 2 4102 4158 513567414 513567470 4.140000e-07 67.6
46 TraesCS6B01G269900 chr2D 86.010 193 26 1 5213 5405 511919847 511920038 8.410000e-49 206.0
47 TraesCS6B01G269900 chr2D 87.500 176 18 3 3607 3780 511918123 511918296 3.920000e-47 200.0
48 TraesCS6B01G269900 chr2D 80.952 105 20 0 5758 5862 636189449 636189345 4.110000e-12 84.2
49 TraesCS6B01G269900 chr2A 87.571 177 18 3 3607 3781 655032198 655032372 1.090000e-47 202.0
50 TraesCS6B01G269900 chr2A 84.974 193 28 1 5213 5405 655032954 655033145 1.820000e-45 195.0
51 TraesCS6B01G269900 chr2A 90.411 146 13 1 566 711 95901041 95900897 2.360000e-44 191.0
52 TraesCS6B01G269900 chr1D 91.275 149 12 1 328 476 394180770 394180917 1.090000e-47 202.0
53 TraesCS6B01G269900 chr1D 91.275 149 12 1 328 476 483919340 483919487 1.090000e-47 202.0
54 TraesCS6B01G269900 chr2B 87.500 176 18 3 3607 3780 601176975 601177148 3.920000e-47 200.0
55 TraesCS6B01G269900 chr2B 83.420 193 31 1 5213 5405 601178885 601179076 1.830000e-40 178.0
56 TraesCS6B01G269900 chr1B 90.000 150 15 0 132 281 657167799 657167650 1.820000e-45 195.0
57 TraesCS6B01G269900 chr1B 85.119 168 20 4 568 732 330789642 330789807 3.970000e-37 167.0
58 TraesCS6B01G269900 chr7D 89.103 156 15 2 133 286 464086606 464086451 6.550000e-45 193.0
59 TraesCS6B01G269900 chr3A 79.755 163 25 8 3933 4090 650184896 650184737 1.890000e-20 111.0
60 TraesCS6B01G269900 chr3A 92.000 50 2 2 4088 4136 424904750 424904702 1.150000e-07 69.4
61 TraesCS6B01G269900 chr3A 88.000 50 4 2 4088 4136 384902031 384901983 2.490000e-04 58.4
62 TraesCS6B01G269900 chr3A 86.792 53 5 2 4085 4136 593543675 593543726 2.490000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G269900 chr6B 485868372 485874774 6402 False 11825.0 11825 100.0000 1 6403 1 chr6B.!!$F2 6402
1 TraesCS6B01G269900 chr6A 473742145 473747927 5782 True 1701.2 5860 90.8390 28 6401 5 chr6A.!!$R2 6373
2 TraesCS6B01G269900 chr6D 334341795 334347318 5523 True 2036.5 3893 93.0035 883 6401 4 chr6D.!!$R1 5518
3 TraesCS6B01G269900 chr6D 431401879 431404907 3028 False 204.5 207 91.6105 328 476 2 chr6D.!!$F3 148
4 TraesCS6B01G269900 chr2D 511918123 511920038 1915 False 203.0 206 86.7550 3607 5405 2 chr2D.!!$F1 1798


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 675 0.102481 TATGAGCGCCTCCGAAAGAC 59.898 55.0 2.29 0.00 36.29 3.01 F
681 683 0.247736 CCTCCGAAAGACTGAGGTGG 59.752 60.0 0.00 0.00 42.50 4.61 F
1834 2007 0.407139 AGGCTGAGCACCTTCCAAAT 59.593 50.0 6.82 0.00 31.87 2.32 F
1874 2047 0.255890 ATGGGCATGGTAACGAGCTT 59.744 50.0 0.00 0.00 38.81 3.74 F
2152 2340 1.454572 ATGTGGCTTGCGCAGACAAA 61.455 50.0 11.31 9.22 44.81 2.83 F
3667 3860 1.474330 ACAAATTTCGGAGGATGGGC 58.526 50.0 0.00 0.00 0.00 5.36 F
4859 6211 0.038343 GTGGTCCAATTGCAACGCAT 60.038 50.0 0.00 0.00 38.76 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 2027 0.255890 AGCTCGTTACCATGCCCATT 59.744 50.000 0.0 0.0 0.00 3.16 R
1856 2029 0.906066 TAAGCTCGTTACCATGCCCA 59.094 50.000 0.0 0.0 0.00 5.36 R
3666 3859 0.807496 AGATTGCTTTTCAGGCTCGC 59.193 50.000 0.0 0.0 0.00 5.03 R
3667 3860 1.808945 ACAGATTGCTTTTCAGGCTCG 59.191 47.619 0.0 0.0 0.00 5.03 R
3780 3973 2.151502 TTCAAGGACAAAAGGTGGCA 57.848 45.000 0.0 0.0 36.72 4.92 R
5211 7323 0.036952 CACTCCTGCATCGACCAAGT 60.037 55.000 0.0 0.0 0.00 3.16 R
6312 8886 0.178068 GCAGGAGGAATAAGGCGTCA 59.822 55.000 0.0 0.0 0.00 4.35 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.809905 GTGATCCCCTAAAACTAGCCTG 58.190 50.000 0.00 0.00 0.00 4.85
22 23 2.777692 TGATCCCCTAAAACTAGCCTGG 59.222 50.000 0.00 0.00 0.00 4.45
23 24 2.354261 TCCCCTAAAACTAGCCTGGT 57.646 50.000 0.00 0.00 0.00 4.00
24 25 2.639487 TCCCCTAAAACTAGCCTGGTT 58.361 47.619 0.00 0.00 0.00 3.67
25 26 2.990998 TCCCCTAAAACTAGCCTGGTTT 59.009 45.455 0.00 0.00 38.35 3.27
26 27 3.399983 TCCCCTAAAACTAGCCTGGTTTT 59.600 43.478 20.50 20.50 45.18 2.43
30 31 5.183331 CCCTAAAACTAGCCTGGTTTTTCTC 59.817 44.000 21.61 0.00 42.04 2.87
67 68 5.772825 TTTCAAAGTCCACCTGAAATCAG 57.227 39.130 3.37 3.37 43.40 2.90
114 116 3.547054 AAGTCCACCTGAAACGTGTTA 57.453 42.857 0.00 0.00 0.00 2.41
125 127 5.009210 CCTGAAACGTGTTATTGAAAAGGGA 59.991 40.000 0.00 0.00 0.00 4.20
132 134 6.266786 ACGTGTTATTGAAAAGGGAAAATCCT 59.733 34.615 0.00 0.00 36.57 3.24
133 135 6.586082 CGTGTTATTGAAAAGGGAAAATCCTG 59.414 38.462 0.00 0.00 37.20 3.86
134 136 7.523052 CGTGTTATTGAAAAGGGAAAATCCTGA 60.523 37.037 0.00 0.00 37.20 3.86
135 137 7.814587 GTGTTATTGAAAAGGGAAAATCCTGAG 59.185 37.037 0.00 0.00 37.20 3.35
137 139 8.585018 GTTATTGAAAAGGGAAAATCCTGAGAA 58.415 33.333 0.00 0.00 37.20 2.87
138 140 6.405278 TTGAAAAGGGAAAATCCTGAGAAC 57.595 37.500 0.00 0.00 37.20 3.01
139 141 4.518970 TGAAAAGGGAAAATCCTGAGAACG 59.481 41.667 0.00 0.00 37.20 3.95
140 142 2.789409 AGGGAAAATCCTGAGAACGG 57.211 50.000 0.00 0.00 36.57 4.44
141 143 1.282157 AGGGAAAATCCTGAGAACGGG 59.718 52.381 0.00 0.00 43.52 5.28
142 144 1.682087 GGGAAAATCCTGAGAACGGGG 60.682 57.143 0.00 0.00 42.48 5.73
143 145 1.095600 GAAAATCCTGAGAACGGGGC 58.904 55.000 0.00 0.00 42.48 5.80
144 146 0.676782 AAAATCCTGAGAACGGGGCG 60.677 55.000 0.00 0.00 42.48 6.13
145 147 1.838073 AAATCCTGAGAACGGGGCGT 61.838 55.000 0.00 0.00 43.97 5.68
146 148 2.240162 AATCCTGAGAACGGGGCGTC 62.240 60.000 0.00 0.00 39.99 5.19
147 149 4.796231 CCTGAGAACGGGGCGTCG 62.796 72.222 0.00 0.00 39.99 5.12
148 150 3.744719 CTGAGAACGGGGCGTCGA 61.745 66.667 0.00 0.00 39.99 4.20
149 151 3.966026 CTGAGAACGGGGCGTCGAC 62.966 68.421 5.18 5.18 39.99 4.20
150 152 4.790861 GAGAACGGGGCGTCGACC 62.791 72.222 9.26 9.26 39.99 4.79
174 176 3.688159 CTGGGCAGCTGGGTTTGC 61.688 66.667 17.12 0.00 39.56 3.68
175 177 4.223125 TGGGCAGCTGGGTTTGCT 62.223 61.111 17.12 0.00 42.06 3.91
180 182 2.599578 AGCTGGGTTTGCTGCCAG 60.600 61.111 0.00 0.00 39.56 4.85
181 183 4.368543 GCTGGGTTTGCTGCCAGC 62.369 66.667 10.45 10.45 46.47 4.85
182 184 3.688159 CTGGGTTTGCTGCCAGCC 61.688 66.667 15.29 9.57 41.51 4.85
183 185 4.223125 TGGGTTTGCTGCCAGCCT 62.223 61.111 15.29 0.00 41.51 4.58
184 186 2.035626 GGGTTTGCTGCCAGCCTA 59.964 61.111 15.29 0.00 41.51 3.93
185 187 2.343426 GGGTTTGCTGCCAGCCTAC 61.343 63.158 15.29 11.70 41.51 3.18
186 188 2.343426 GGTTTGCTGCCAGCCTACC 61.343 63.158 15.29 16.90 41.51 3.18
187 189 2.035626 TTTGCTGCCAGCCTACCC 59.964 61.111 15.29 0.00 41.51 3.69
188 190 2.839609 TTTGCTGCCAGCCTACCCA 61.840 57.895 15.29 0.00 41.51 4.51
189 191 2.769652 TTTGCTGCCAGCCTACCCAG 62.770 60.000 15.29 0.00 41.51 4.45
190 192 4.496336 GCTGCCAGCCTACCCAGG 62.496 72.222 5.06 0.00 45.77 4.45
191 193 3.011517 CTGCCAGCCTACCCAGGT 61.012 66.667 0.00 0.00 44.68 4.00
192 194 2.531685 TGCCAGCCTACCCAGGTT 60.532 61.111 0.00 0.00 44.68 3.50
193 195 2.272471 GCCAGCCTACCCAGGTTC 59.728 66.667 0.00 0.00 44.68 3.62
194 196 2.584608 CCAGCCTACCCAGGTTCG 59.415 66.667 0.00 0.00 44.68 3.95
195 197 1.987855 CCAGCCTACCCAGGTTCGA 60.988 63.158 0.00 0.00 44.68 3.71
196 198 1.517832 CAGCCTACCCAGGTTCGAG 59.482 63.158 0.00 0.00 44.68 4.04
197 199 1.078710 AGCCTACCCAGGTTCGAGT 59.921 57.895 0.00 0.00 44.68 4.18
198 200 0.971447 AGCCTACCCAGGTTCGAGTC 60.971 60.000 0.00 0.00 44.68 3.36
199 201 0.971447 GCCTACCCAGGTTCGAGTCT 60.971 60.000 0.00 0.00 44.68 3.24
200 202 1.684248 GCCTACCCAGGTTCGAGTCTA 60.684 57.143 0.00 0.00 44.68 2.59
201 203 2.299521 CCTACCCAGGTTCGAGTCTAG 58.700 57.143 0.00 0.00 37.15 2.43
202 204 2.299521 CTACCCAGGTTCGAGTCTAGG 58.700 57.143 0.00 1.32 0.00 3.02
203 205 0.971447 ACCCAGGTTCGAGTCTAGGC 60.971 60.000 0.00 0.00 0.00 3.93
204 206 0.684805 CCCAGGTTCGAGTCTAGGCT 60.685 60.000 0.00 0.00 0.00 4.58
205 207 0.741915 CCAGGTTCGAGTCTAGGCTC 59.258 60.000 14.65 14.65 0.00 4.70
206 208 1.683629 CCAGGTTCGAGTCTAGGCTCT 60.684 57.143 21.58 0.00 33.55 4.09
207 209 2.096248 CAGGTTCGAGTCTAGGCTCTT 58.904 52.381 21.58 0.21 33.55 2.85
208 210 3.280295 CAGGTTCGAGTCTAGGCTCTTA 58.720 50.000 21.58 7.43 33.55 2.10
209 211 3.886505 CAGGTTCGAGTCTAGGCTCTTAT 59.113 47.826 21.58 1.15 33.55 1.73
210 212 5.064558 CAGGTTCGAGTCTAGGCTCTTATA 58.935 45.833 21.58 2.46 33.55 0.98
211 213 5.049267 CAGGTTCGAGTCTAGGCTCTTATAC 60.049 48.000 21.58 12.95 33.55 1.47
212 214 4.083908 GGTTCGAGTCTAGGCTCTTATACG 60.084 50.000 21.58 8.55 33.55 3.06
213 215 4.333913 TCGAGTCTAGGCTCTTATACGT 57.666 45.455 21.58 0.00 33.55 3.57
214 216 4.056740 TCGAGTCTAGGCTCTTATACGTG 58.943 47.826 21.58 4.20 33.55 4.49
215 217 3.186817 CGAGTCTAGGCTCTTATACGTGG 59.813 52.174 21.58 0.00 33.55 4.94
216 218 4.136051 GAGTCTAGGCTCTTATACGTGGT 58.864 47.826 17.32 0.00 32.99 4.16
217 219 3.884091 AGTCTAGGCTCTTATACGTGGTG 59.116 47.826 0.00 0.00 0.00 4.17
218 220 2.621998 TCTAGGCTCTTATACGTGGTGC 59.378 50.000 0.00 0.00 0.00 5.01
219 221 1.486211 AGGCTCTTATACGTGGTGCT 58.514 50.000 0.00 0.00 0.00 4.40
220 222 1.409427 AGGCTCTTATACGTGGTGCTC 59.591 52.381 0.00 0.00 0.00 4.26
221 223 1.478137 GCTCTTATACGTGGTGCTCG 58.522 55.000 0.00 0.00 0.00 5.03
222 224 1.478137 CTCTTATACGTGGTGCTCGC 58.522 55.000 0.00 0.00 0.00 5.03
229 231 2.665185 GTGGTGCTCGCGGAGTTT 60.665 61.111 6.13 0.00 31.39 2.66
230 232 2.357034 TGGTGCTCGCGGAGTTTC 60.357 61.111 6.13 0.00 31.39 2.78
231 233 2.048127 GGTGCTCGCGGAGTTTCT 60.048 61.111 6.13 0.00 31.39 2.52
232 234 2.095252 GGTGCTCGCGGAGTTTCTC 61.095 63.158 6.13 0.00 31.39 2.87
233 235 2.095252 GTGCTCGCGGAGTTTCTCC 61.095 63.158 6.13 5.79 46.44 3.71
248 250 8.747538 GGAGTTTCTCCTATAAATAAAAGCCA 57.252 34.615 8.38 0.00 46.41 4.75
249 251 9.185680 GGAGTTTCTCCTATAAATAAAAGCCAA 57.814 33.333 8.38 0.00 46.41 4.52
251 253 8.674607 AGTTTCTCCTATAAATAAAAGCCAACG 58.325 33.333 0.00 0.00 0.00 4.10
252 254 8.671028 GTTTCTCCTATAAATAAAAGCCAACGA 58.329 33.333 0.00 0.00 0.00 3.85
253 255 8.433421 TTCTCCTATAAATAAAAGCCAACGAG 57.567 34.615 0.00 0.00 0.00 4.18
254 256 6.990349 TCTCCTATAAATAAAAGCCAACGAGG 59.010 38.462 0.00 0.00 41.84 4.63
255 257 6.059484 TCCTATAAATAAAAGCCAACGAGGG 58.941 40.000 0.00 0.00 38.09 4.30
271 273 4.434483 GGTTAGCCCTTGGGTTGG 57.566 61.111 7.61 0.00 34.28 3.77
272 274 1.463375 GGTTAGCCCTTGGGTTGGT 59.537 57.895 7.61 0.00 34.28 3.67
273 275 0.611062 GGTTAGCCCTTGGGTTGGTC 60.611 60.000 7.61 0.00 34.28 4.02
274 276 0.404426 GTTAGCCCTTGGGTTGGTCT 59.596 55.000 7.61 0.00 34.28 3.85
275 277 0.696501 TTAGCCCTTGGGTTGGTCTC 59.303 55.000 7.61 0.00 34.28 3.36
276 278 0.474854 TAGCCCTTGGGTTGGTCTCA 60.475 55.000 7.61 0.00 34.28 3.27
277 279 1.142688 AGCCCTTGGGTTGGTCTCAT 61.143 55.000 7.61 0.00 0.00 2.90
278 280 0.251787 GCCCTTGGGTTGGTCTCATT 60.252 55.000 7.61 0.00 0.00 2.57
279 281 1.827245 GCCCTTGGGTTGGTCTCATTT 60.827 52.381 7.61 0.00 0.00 2.32
280 282 2.608623 CCCTTGGGTTGGTCTCATTTT 58.391 47.619 0.00 0.00 0.00 1.82
281 283 2.972021 CCCTTGGGTTGGTCTCATTTTT 59.028 45.455 0.00 0.00 0.00 1.94
304 306 4.846779 TTGAAAAGGGAAAATCCACTCG 57.153 40.909 0.00 0.00 38.64 4.18
305 307 2.556622 TGAAAAGGGAAAATCCACTCGC 59.443 45.455 0.00 0.00 38.64 5.03
343 345 7.329588 ACTATCAATGATAAACCCCGTTTTC 57.670 36.000 4.37 0.00 37.01 2.29
407 409 3.137533 GGCCTCAGAAATCAGAGCATAC 58.862 50.000 0.00 0.00 0.00 2.39
414 416 7.120285 CCTCAGAAATCAGAGCATACAAAAAGA 59.880 37.037 0.00 0.00 0.00 2.52
469 471 9.558396 TCAAACCAAAATCTTTGCTAATTTGAT 57.442 25.926 6.92 0.00 33.86 2.57
520 522 9.344772 TGTGAGGAATAAAGTTTTAGTGCTTTA 57.655 29.630 7.37 0.00 39.02 1.85
593 595 6.993786 TTTTGAACATCAGTACAGACACAA 57.006 33.333 0.00 0.00 0.00 3.33
594 596 6.603237 TTTGAACATCAGTACAGACACAAG 57.397 37.500 0.00 0.00 0.00 3.16
595 597 4.058124 TGAACATCAGTACAGACACAAGC 58.942 43.478 0.00 0.00 0.00 4.01
596 598 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
597 599 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
598 600 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
599 601 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
601 603 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
603 605 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
604 606 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
605 607 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
607 609 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
608 610 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
615 617 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
616 618 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
618 620 3.367932 GCTCATATACACGCGCATACATT 59.632 43.478 5.73 0.00 0.00 2.71
619 621 4.490959 GCTCATATACACGCGCATACATTC 60.491 45.833 5.73 0.00 0.00 2.67
620 622 4.551388 TCATATACACGCGCATACATTCA 58.449 39.130 5.73 0.00 0.00 2.57
621 623 4.384547 TCATATACACGCGCATACATTCAC 59.615 41.667 5.73 0.00 0.00 3.18
622 624 1.282817 TACACGCGCATACATTCACC 58.717 50.000 5.73 0.00 0.00 4.02
623 625 0.391130 ACACGCGCATACATTCACCT 60.391 50.000 5.73 0.00 0.00 4.00
624 626 0.301687 CACGCGCATACATTCACCTC 59.698 55.000 5.73 0.00 0.00 3.85
625 627 0.175760 ACGCGCATACATTCACCTCT 59.824 50.000 5.73 0.00 0.00 3.69
626 628 1.407618 ACGCGCATACATTCACCTCTA 59.592 47.619 5.73 0.00 0.00 2.43
627 629 2.035961 ACGCGCATACATTCACCTCTAT 59.964 45.455 5.73 0.00 0.00 1.98
628 630 2.409715 CGCGCATACATTCACCTCTATG 59.590 50.000 8.75 0.00 0.00 2.23
629 631 3.653344 GCGCATACATTCACCTCTATGA 58.347 45.455 0.30 0.00 0.00 2.15
630 632 4.058124 GCGCATACATTCACCTCTATGAA 58.942 43.478 0.30 0.00 42.62 2.57
631 633 4.084328 GCGCATACATTCACCTCTATGAAC 60.084 45.833 0.30 0.00 41.29 3.18
632 634 4.148871 CGCATACATTCACCTCTATGAACG 59.851 45.833 0.00 0.00 41.29 3.95
633 635 4.084328 GCATACATTCACCTCTATGAACGC 60.084 45.833 0.00 0.00 41.29 4.84
634 636 3.610040 ACATTCACCTCTATGAACGCA 57.390 42.857 0.00 0.00 41.29 5.24
635 637 3.262420 ACATTCACCTCTATGAACGCAC 58.738 45.455 0.00 0.00 41.29 5.34
636 638 3.261580 CATTCACCTCTATGAACGCACA 58.738 45.455 0.00 0.00 41.29 4.57
637 639 2.363788 TCACCTCTATGAACGCACAC 57.636 50.000 0.00 0.00 0.00 3.82
638 640 1.616374 TCACCTCTATGAACGCACACA 59.384 47.619 0.00 0.00 0.00 3.72
639 641 1.726791 CACCTCTATGAACGCACACAC 59.273 52.381 0.00 0.00 0.00 3.82
640 642 0.992072 CCTCTATGAACGCACACACG 59.008 55.000 0.00 0.00 39.50 4.49
641 643 0.366871 CTCTATGAACGCACACACGC 59.633 55.000 0.00 0.00 36.19 5.34
642 644 0.319125 TCTATGAACGCACACACGCA 60.319 50.000 0.00 0.00 36.19 5.24
643 645 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
644 646 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
645 647 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
646 648 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
649 651 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
650 652 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
651 653 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
652 654 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
653 655 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
654 656 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
655 657 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
656 658 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
657 659 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
658 660 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
659 661 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
660 662 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
661 663 0.759436 ACACCCTACCCCTATGAGCG 60.759 60.000 0.00 0.00 0.00 5.03
662 664 1.837499 ACCCTACCCCTATGAGCGC 60.837 63.158 0.00 0.00 0.00 5.92
663 665 2.584391 CCCTACCCCTATGAGCGCC 61.584 68.421 2.29 0.00 0.00 6.53
664 666 1.534235 CCTACCCCTATGAGCGCCT 60.534 63.158 2.29 0.00 0.00 5.52
665 667 1.536943 CCTACCCCTATGAGCGCCTC 61.537 65.000 2.29 1.22 0.00 4.70
666 668 1.533273 TACCCCTATGAGCGCCTCC 60.533 63.158 2.29 0.00 0.00 4.30
667 669 3.996124 CCCCTATGAGCGCCTCCG 61.996 72.222 2.29 0.00 37.57 4.63
668 670 2.912542 CCCTATGAGCGCCTCCGA 60.913 66.667 2.29 0.00 36.29 4.55
669 671 2.498941 CCCTATGAGCGCCTCCGAA 61.499 63.158 2.29 0.00 36.29 4.30
670 672 1.441729 CCTATGAGCGCCTCCGAAA 59.558 57.895 2.29 0.00 36.29 3.46
671 673 0.598680 CCTATGAGCGCCTCCGAAAG 60.599 60.000 2.29 0.00 36.29 2.62
672 674 0.385751 CTATGAGCGCCTCCGAAAGA 59.614 55.000 2.29 0.00 36.29 2.52
673 675 0.102481 TATGAGCGCCTCCGAAAGAC 59.898 55.000 2.29 0.00 36.29 3.01
674 676 1.608717 ATGAGCGCCTCCGAAAGACT 61.609 55.000 2.29 0.00 36.29 3.24
675 677 1.807573 GAGCGCCTCCGAAAGACTG 60.808 63.158 2.29 0.00 36.29 3.51
676 678 2.214181 GAGCGCCTCCGAAAGACTGA 62.214 60.000 2.29 0.00 36.29 3.41
677 679 1.807573 GCGCCTCCGAAAGACTGAG 60.808 63.158 0.00 0.00 36.29 3.35
679 681 1.878656 CGCCTCCGAAAGACTGAGGT 61.879 60.000 8.05 0.00 46.91 3.85
680 682 0.390472 GCCTCCGAAAGACTGAGGTG 60.390 60.000 8.05 0.00 46.91 4.00
681 683 0.247736 CCTCCGAAAGACTGAGGTGG 59.752 60.000 0.00 0.00 42.50 4.61
682 684 1.257743 CTCCGAAAGACTGAGGTGGA 58.742 55.000 0.00 0.00 0.00 4.02
683 685 1.203523 CTCCGAAAGACTGAGGTGGAG 59.796 57.143 0.00 0.00 35.97 3.86
684 686 1.203013 TCCGAAAGACTGAGGTGGAGA 60.203 52.381 0.00 0.00 0.00 3.71
685 687 1.827969 CCGAAAGACTGAGGTGGAGAT 59.172 52.381 0.00 0.00 0.00 2.75
686 688 2.234908 CCGAAAGACTGAGGTGGAGATT 59.765 50.000 0.00 0.00 0.00 2.40
687 689 3.307059 CCGAAAGACTGAGGTGGAGATTT 60.307 47.826 0.00 0.00 0.00 2.17
688 690 4.081642 CCGAAAGACTGAGGTGGAGATTTA 60.082 45.833 0.00 0.00 0.00 1.40
689 691 4.865365 CGAAAGACTGAGGTGGAGATTTAC 59.135 45.833 0.00 0.00 0.00 2.01
690 692 4.457834 AAGACTGAGGTGGAGATTTACG 57.542 45.455 0.00 0.00 0.00 3.18
691 693 3.698289 AGACTGAGGTGGAGATTTACGA 58.302 45.455 0.00 0.00 0.00 3.43
692 694 4.087182 AGACTGAGGTGGAGATTTACGAA 58.913 43.478 0.00 0.00 0.00 3.85
693 695 4.158764 AGACTGAGGTGGAGATTTACGAAG 59.841 45.833 0.00 0.00 0.00 3.79
695 697 4.082136 ACTGAGGTGGAGATTTACGAAGTC 60.082 45.833 0.00 0.00 43.93 3.01
696 698 3.830178 TGAGGTGGAGATTTACGAAGTCA 59.170 43.478 0.00 0.00 43.93 3.41
697 699 4.174762 GAGGTGGAGATTTACGAAGTCAC 58.825 47.826 0.00 0.00 43.93 3.67
698 700 3.056035 AGGTGGAGATTTACGAAGTCACC 60.056 47.826 0.00 0.00 43.93 4.02
699 701 2.921754 GTGGAGATTTACGAAGTCACCG 59.078 50.000 0.00 0.00 43.93 4.94
700 702 2.559668 TGGAGATTTACGAAGTCACCGT 59.440 45.455 0.00 0.00 43.93 4.83
701 703 3.758023 TGGAGATTTACGAAGTCACCGTA 59.242 43.478 0.00 0.00 43.93 4.02
702 704 4.142534 TGGAGATTTACGAAGTCACCGTAG 60.143 45.833 0.00 0.00 43.93 3.51
715 717 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
716 718 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
721 723 4.813526 CGCCTCGTCGTCGACAGG 62.814 72.222 26.42 26.42 41.35 4.00
722 724 3.429141 GCCTCGTCGTCGACAGGA 61.429 66.667 31.08 19.58 41.35 3.86
723 725 2.974489 GCCTCGTCGTCGACAGGAA 61.974 63.158 31.08 14.07 41.35 3.36
724 726 1.154263 CCTCGTCGTCGACAGGAAC 60.154 63.158 26.56 6.82 41.35 3.62
725 727 1.509370 CTCGTCGTCGACAGGAACG 60.509 63.158 24.13 17.77 41.35 3.95
726 728 2.167808 CTCGTCGTCGACAGGAACGT 62.168 60.000 24.13 0.00 41.35 3.99
727 729 1.791283 CGTCGTCGACAGGAACGTC 60.791 63.158 24.13 0.00 39.71 4.34
728 730 1.573436 GTCGTCGACAGGAACGTCT 59.427 57.895 20.28 0.00 33.54 4.18
729 731 0.452452 GTCGTCGACAGGAACGTCTC 60.452 60.000 20.28 0.00 33.54 3.36
730 732 1.154263 CGTCGACAGGAACGTCTCC 60.154 63.158 17.16 8.26 45.81 3.71
737 739 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
738 740 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
739 741 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
740 742 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
741 743 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
742 744 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
743 745 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
744 746 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
745 747 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
746 748 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
747 749 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
748 750 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
749 751 0.745486 CTCCCACTGAATGCGCATCA 60.745 55.000 25.53 20.60 0.00 3.07
750 752 1.026182 TCCCACTGAATGCGCATCAC 61.026 55.000 25.53 20.34 0.00 3.06
751 753 1.430632 CCACTGAATGCGCATCACC 59.569 57.895 25.53 16.03 0.00 4.02
752 754 1.061411 CACTGAATGCGCATCACCG 59.939 57.895 25.53 18.28 0.00 4.94
753 755 1.079197 ACTGAATGCGCATCACCGA 60.079 52.632 25.53 5.02 0.00 4.69
754 756 0.673333 ACTGAATGCGCATCACCGAA 60.673 50.000 25.53 4.98 0.00 4.30
755 757 0.447406 CTGAATGCGCATCACCGAAA 59.553 50.000 25.53 4.46 0.00 3.46
756 758 0.877743 TGAATGCGCATCACCGAAAA 59.122 45.000 25.53 2.10 0.00 2.29
757 759 1.472082 TGAATGCGCATCACCGAAAAT 59.528 42.857 25.53 3.87 0.00 1.82
758 760 2.111756 GAATGCGCATCACCGAAAATC 58.888 47.619 25.53 10.33 0.00 2.17
759 761 1.093972 ATGCGCATCACCGAAAATCA 58.906 45.000 19.28 0.00 0.00 2.57
761 763 1.202166 TGCGCATCACCGAAAATCATG 60.202 47.619 5.66 0.00 0.00 3.07
764 766 3.757184 CGCATCACCGAAAATCATGAAA 58.243 40.909 0.00 0.00 0.00 2.69
766 768 5.509771 CGCATCACCGAAAATCATGAAATA 58.490 37.500 0.00 0.00 0.00 1.40
773 775 8.190122 TCACCGAAAATCATGAAATAAATCCAG 58.810 33.333 0.00 0.00 0.00 3.86
788 790 9.669887 AAATAAATCCAGAAATAAATGCAAGCA 57.330 25.926 0.00 0.00 0.00 3.91
790 792 5.927281 ATCCAGAAATAAATGCAAGCACT 57.073 34.783 0.00 0.00 0.00 4.40
791 793 7.408756 AATCCAGAAATAAATGCAAGCACTA 57.591 32.000 0.00 0.00 0.00 2.74
794 796 5.357878 CCAGAAATAAATGCAAGCACTAGGA 59.642 40.000 0.00 0.00 0.00 2.94
795 797 6.040166 CCAGAAATAAATGCAAGCACTAGGAT 59.960 38.462 0.00 0.00 0.00 3.24
796 798 7.417116 CCAGAAATAAATGCAAGCACTAGGATT 60.417 37.037 0.00 0.00 0.00 3.01
797 799 7.977853 CAGAAATAAATGCAAGCACTAGGATTT 59.022 33.333 0.00 0.00 38.88 2.17
798 800 9.189156 AGAAATAAATGCAAGCACTAGGATTTA 57.811 29.630 0.00 0.00 40.58 1.40
799 801 9.801873 GAAATAAATGCAAGCACTAGGATTTAA 57.198 29.630 0.00 0.00 40.02 1.52
801 803 9.586435 AATAAATGCAAGCACTAGGATTTAAAC 57.414 29.630 0.00 0.00 40.02 2.01
802 804 6.840780 AATGCAAGCACTAGGATTTAAACT 57.159 33.333 0.00 0.00 0.00 2.66
803 805 5.880054 TGCAAGCACTAGGATTTAAACTC 57.120 39.130 0.00 0.00 0.00 3.01
804 806 5.560724 TGCAAGCACTAGGATTTAAACTCT 58.439 37.500 0.00 0.00 0.00 3.24
805 807 6.707290 TGCAAGCACTAGGATTTAAACTCTA 58.293 36.000 0.00 0.00 0.00 2.43
809 811 8.616076 CAAGCACTAGGATTTAAACTCTAATGG 58.384 37.037 0.00 0.00 0.00 3.16
810 812 7.283329 AGCACTAGGATTTAAACTCTAATGGG 58.717 38.462 0.00 0.20 0.00 4.00
811 813 7.054751 GCACTAGGATTTAAACTCTAATGGGT 58.945 38.462 0.00 0.15 0.00 4.51
812 814 7.556635 GCACTAGGATTTAAACTCTAATGGGTT 59.443 37.037 0.00 0.00 0.00 4.11
813 815 8.893727 CACTAGGATTTAAACTCTAATGGGTTG 58.106 37.037 0.00 0.00 0.00 3.77
814 816 8.053355 ACTAGGATTTAAACTCTAATGGGTTGG 58.947 37.037 0.00 0.00 0.00 3.77
816 818 7.935405 AGGATTTAAACTCTAATGGGTTGGTA 58.065 34.615 0.00 0.00 0.00 3.25
817 819 8.566109 AGGATTTAAACTCTAATGGGTTGGTAT 58.434 33.333 0.00 0.00 0.00 2.73
818 820 9.856162 GGATTTAAACTCTAATGGGTTGGTATA 57.144 33.333 0.00 0.00 0.00 1.47
822 824 9.841295 TTAAACTCTAATGGGTTGGTATATCAC 57.159 33.333 0.00 0.00 0.00 3.06
824 826 7.446106 ACTCTAATGGGTTGGTATATCACAA 57.554 36.000 0.00 0.00 0.00 3.33
826 828 8.157476 ACTCTAATGGGTTGGTATATCACAATC 58.843 37.037 0.00 0.00 0.00 2.67
827 829 7.458397 TCTAATGGGTTGGTATATCACAATCC 58.542 38.462 12.46 12.46 45.86 3.01
828 830 4.447138 TGGGTTGGTATATCACAATCCC 57.553 45.455 15.33 15.37 45.24 3.85
829 831 4.051478 TGGGTTGGTATATCACAATCCCT 58.949 43.478 15.33 0.00 45.24 4.20
830 832 4.104102 TGGGTTGGTATATCACAATCCCTC 59.896 45.833 15.33 0.00 45.24 4.30
831 833 4.351111 GGGTTGGTATATCACAATCCCTCT 59.649 45.833 9.43 0.00 41.06 3.69
832 834 5.546499 GGGTTGGTATATCACAATCCCTCTA 59.454 44.000 9.43 0.00 41.06 2.43
833 835 6.043938 GGGTTGGTATATCACAATCCCTCTAA 59.956 42.308 9.43 0.00 41.06 2.10
835 837 6.681729 TGGTATATCACAATCCCTCTAACC 57.318 41.667 0.00 0.00 0.00 2.85
836 838 6.147473 TGGTATATCACAATCCCTCTAACCA 58.853 40.000 0.00 0.00 0.00 3.67
837 839 6.792473 TGGTATATCACAATCCCTCTAACCAT 59.208 38.462 0.00 0.00 0.00 3.55
838 840 7.038302 TGGTATATCACAATCCCTCTAACCATC 60.038 40.741 0.00 0.00 0.00 3.51
839 841 4.713792 ATCACAATCCCTCTAACCATCC 57.286 45.455 0.00 0.00 0.00 3.51
840 842 3.459828 TCACAATCCCTCTAACCATCCA 58.540 45.455 0.00 0.00 0.00 3.41
841 843 3.849574 TCACAATCCCTCTAACCATCCAA 59.150 43.478 0.00 0.00 0.00 3.53
842 844 3.947834 CACAATCCCTCTAACCATCCAAC 59.052 47.826 0.00 0.00 0.00 3.77
843 845 3.053619 ACAATCCCTCTAACCATCCAACC 60.054 47.826 0.00 0.00 0.00 3.77
844 846 2.352561 TCCCTCTAACCATCCAACCA 57.647 50.000 0.00 0.00 0.00 3.67
845 847 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
846 848 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
847 849 2.242196 CCCTCTAACCATCCAACCACAT 59.758 50.000 0.00 0.00 0.00 3.21
849 851 3.308402 CCTCTAACCATCCAACCACATGT 60.308 47.826 0.00 0.00 0.00 3.21
850 852 4.335416 CTCTAACCATCCAACCACATGTT 58.665 43.478 0.00 0.00 37.80 2.71
862 864 3.135414 CCACATGTTGGTTCGCATTAG 57.865 47.619 0.00 0.00 41.10 1.73
863 865 2.487762 CCACATGTTGGTTCGCATTAGT 59.512 45.455 0.00 0.00 41.10 2.24
870 1029 6.897259 TGTTGGTTCGCATTAGTATTACTC 57.103 37.500 0.00 0.00 0.00 2.59
1514 1676 3.409384 TCCCCATGGACGCATTGA 58.591 55.556 15.22 0.00 35.03 2.57
1546 1708 7.065324 TCGTCAGGTAATTTTGTGAATACCATC 59.935 37.037 3.88 0.00 0.00 3.51
1692 1863 0.824109 TGAGCGGAACATAGGGAGTG 59.176 55.000 0.00 0.00 0.00 3.51
1797 1970 6.591935 TCCTGACAAACTGAGTATTTGAAGT 58.408 36.000 4.18 0.00 39.01 3.01
1798 1971 6.483307 TCCTGACAAACTGAGTATTTGAAGTG 59.517 38.462 4.18 0.00 39.01 3.16
1799 1972 6.483307 CCTGACAAACTGAGTATTTGAAGTGA 59.517 38.462 4.18 0.00 39.01 3.41
1801 1974 8.087982 TGACAAACTGAGTATTTGAAGTGATC 57.912 34.615 4.18 0.00 39.01 2.92
1802 1975 7.933577 TGACAAACTGAGTATTTGAAGTGATCT 59.066 33.333 4.18 0.00 39.01 2.75
1803 1976 8.316640 ACAAACTGAGTATTTGAAGTGATCTC 57.683 34.615 4.18 0.00 39.01 2.75
1804 1977 8.153550 ACAAACTGAGTATTTGAAGTGATCTCT 58.846 33.333 4.18 0.00 39.01 3.10
1805 1978 8.655092 CAAACTGAGTATTTGAAGTGATCTCTC 58.345 37.037 0.00 0.00 39.01 3.20
1806 1979 7.473735 ACTGAGTATTTGAAGTGATCTCTCA 57.526 36.000 0.00 0.00 0.00 3.27
1807 1980 7.546358 ACTGAGTATTTGAAGTGATCTCTCAG 58.454 38.462 14.14 14.14 46.37 3.35
1808 1981 7.473735 TGAGTATTTGAAGTGATCTCTCAGT 57.526 36.000 0.00 0.00 36.58 3.41
1809 1982 8.581253 TGAGTATTTGAAGTGATCTCTCAGTA 57.419 34.615 0.00 0.00 33.81 2.74
1810 1983 9.025041 TGAGTATTTGAAGTGATCTCTCAGTAA 57.975 33.333 0.00 0.00 33.81 2.24
1811 1984 9.296400 GAGTATTTGAAGTGATCTCTCAGTAAC 57.704 37.037 0.00 0.00 33.81 2.50
1812 1985 7.971168 AGTATTTGAAGTGATCTCTCAGTAACG 59.029 37.037 0.00 0.00 33.81 3.18
1813 1986 4.703645 TGAAGTGATCTCTCAGTAACGG 57.296 45.455 0.00 0.00 33.81 4.44
1814 1987 3.119459 TGAAGTGATCTCTCAGTAACGGC 60.119 47.826 0.00 0.00 33.81 5.68
1815 1988 2.447443 AGTGATCTCTCAGTAACGGCA 58.553 47.619 0.00 0.00 33.14 5.69
1816 1989 2.425312 AGTGATCTCTCAGTAACGGCAG 59.575 50.000 0.00 0.00 33.14 4.85
1817 1990 1.751351 TGATCTCTCAGTAACGGCAGG 59.249 52.381 0.00 0.00 0.00 4.85
1818 1991 0.461961 ATCTCTCAGTAACGGCAGGC 59.538 55.000 0.00 0.00 0.00 4.85
1819 1992 0.612174 TCTCTCAGTAACGGCAGGCT 60.612 55.000 0.00 0.00 0.00 4.58
1820 1993 0.459237 CTCTCAGTAACGGCAGGCTG 60.459 60.000 10.94 10.94 0.00 4.85
1821 1994 0.898326 TCTCAGTAACGGCAGGCTGA 60.898 55.000 20.86 0.00 36.65 4.26
1822 1995 0.459237 CTCAGTAACGGCAGGCTGAG 60.459 60.000 20.86 13.73 45.64 3.35
1823 1996 2.103042 CAGTAACGGCAGGCTGAGC 61.103 63.158 20.86 2.88 0.00 4.26
1824 1997 2.047274 GTAACGGCAGGCTGAGCA 60.047 61.111 20.86 0.02 0.00 4.26
1825 1998 2.047274 TAACGGCAGGCTGAGCAC 60.047 61.111 20.86 3.74 0.00 4.40
1826 1999 3.605749 TAACGGCAGGCTGAGCACC 62.606 63.158 20.86 8.85 0.00 5.01
1828 2001 4.711949 CGGCAGGCTGAGCACCTT 62.712 66.667 20.86 0.00 34.42 3.50
1829 2002 2.749441 GGCAGGCTGAGCACCTTC 60.749 66.667 20.86 0.00 34.42 3.46
1830 2003 2.749441 GCAGGCTGAGCACCTTCC 60.749 66.667 20.86 0.00 34.42 3.46
1831 2004 2.752358 CAGGCTGAGCACCTTCCA 59.248 61.111 9.42 0.00 34.42 3.53
1832 2005 1.073722 CAGGCTGAGCACCTTCCAA 59.926 57.895 9.42 0.00 34.42 3.53
1833 2006 0.538057 CAGGCTGAGCACCTTCCAAA 60.538 55.000 9.42 0.00 34.42 3.28
1834 2007 0.407139 AGGCTGAGCACCTTCCAAAT 59.593 50.000 6.82 0.00 31.87 2.32
1835 2008 1.203100 AGGCTGAGCACCTTCCAAATT 60.203 47.619 6.82 0.00 31.87 1.82
1836 2009 2.041620 AGGCTGAGCACCTTCCAAATTA 59.958 45.455 6.82 0.00 31.87 1.40
1837 2010 3.026694 GGCTGAGCACCTTCCAAATTAT 58.973 45.455 6.82 0.00 0.00 1.28
1838 2011 3.067320 GGCTGAGCACCTTCCAAATTATC 59.933 47.826 6.82 0.00 0.00 1.75
1839 2012 3.067320 GCTGAGCACCTTCCAAATTATCC 59.933 47.826 0.00 0.00 0.00 2.59
1840 2013 4.272489 CTGAGCACCTTCCAAATTATCCA 58.728 43.478 0.00 0.00 0.00 3.41
1841 2014 4.272489 TGAGCACCTTCCAAATTATCCAG 58.728 43.478 0.00 0.00 0.00 3.86
1842 2015 4.018506 TGAGCACCTTCCAAATTATCCAGA 60.019 41.667 0.00 0.00 0.00 3.86
1843 2016 4.934356 AGCACCTTCCAAATTATCCAGAA 58.066 39.130 0.00 0.00 0.00 3.02
1844 2017 5.522641 AGCACCTTCCAAATTATCCAGAAT 58.477 37.500 0.00 0.00 0.00 2.40
1845 2018 5.361857 AGCACCTTCCAAATTATCCAGAATG 59.638 40.000 0.00 0.00 0.00 2.67
1863 2036 7.096884 CAGAATGGATATTAGAATGGGCATG 57.903 40.000 0.00 0.00 0.00 4.06
1864 2037 6.096423 CAGAATGGATATTAGAATGGGCATGG 59.904 42.308 0.00 0.00 0.00 3.66
1865 2038 5.541258 ATGGATATTAGAATGGGCATGGT 57.459 39.130 0.00 0.00 0.00 3.55
1866 2039 6.656965 ATGGATATTAGAATGGGCATGGTA 57.343 37.500 0.00 0.00 0.00 3.25
1867 2040 6.461577 TGGATATTAGAATGGGCATGGTAA 57.538 37.500 0.00 0.00 0.00 2.85
1868 2041 6.245408 TGGATATTAGAATGGGCATGGTAAC 58.755 40.000 0.00 0.00 0.00 2.50
1869 2042 5.354234 GGATATTAGAATGGGCATGGTAACG 59.646 44.000 0.00 0.00 42.51 3.18
1874 2047 0.255890 ATGGGCATGGTAACGAGCTT 59.744 50.000 0.00 0.00 38.81 3.74
1879 2052 2.287009 GGCATGGTAACGAGCTTATTGC 60.287 50.000 0.00 0.00 38.81 3.56
1967 2140 4.692155 CCCTTCATTTTTGGCAATCTTCAC 59.308 41.667 0.00 0.00 0.00 3.18
2017 2205 3.712733 AGTTATGCCGGTTTATCTGGGTA 59.287 43.478 1.90 0.00 42.62 3.69
2063 2251 8.785468 AAATTTAAACACATGCATTTTCTTGC 57.215 26.923 0.00 0.00 43.07 4.01
2083 2271 7.076362 TCTTGCGAATATCGAATACTAGTGTC 58.924 38.462 5.39 1.89 43.74 3.67
2143 2331 8.090214 ACAATTTTATCCATATATGTGGCTTGC 58.910 33.333 13.45 0.00 39.19 4.01
2144 2332 5.878332 TTTATCCATATATGTGGCTTGCG 57.122 39.130 13.45 0.00 39.19 4.85
2152 2340 1.454572 ATGTGGCTTGCGCAGACAAA 61.455 50.000 11.31 9.22 44.81 2.83
2167 2355 6.074642 CGCAGACAAATAACACGTTGATTTA 58.925 36.000 0.00 0.00 0.00 1.40
2238 2426 8.260114 TGTAATTGTTCTATTCTGCATCTCTGA 58.740 33.333 0.00 0.00 0.00 3.27
2279 2467 4.043561 TGGTGGTTAGGCCTTTCTATTTCA 59.956 41.667 12.58 0.00 38.35 2.69
2373 2563 6.694411 CCAGTGTTCACTTTCTTCATTTCAAG 59.306 38.462 2.47 0.00 0.00 3.02
2497 2688 6.720309 TCCACATGTCTTATTTCCTGATTGA 58.280 36.000 0.00 0.00 0.00 2.57
2498 2689 6.825213 TCCACATGTCTTATTTCCTGATTGAG 59.175 38.462 0.00 0.00 0.00 3.02
2685 2878 6.019779 TGGACCTTTTTGTATGGATTTTCG 57.980 37.500 0.00 0.00 0.00 3.46
3188 3381 3.244249 ACCAAGTCTTACTCAGCCACTTC 60.244 47.826 0.00 0.00 0.00 3.01
3545 3738 7.609760 TGTATAGTCTGCCTACACAAAAATG 57.390 36.000 0.00 0.00 30.19 2.32
3566 3759 9.558396 AAAATGAAGCATAAACCTTTTTCATCA 57.442 25.926 0.00 0.00 35.03 3.07
3574 3767 8.296713 GCATAAACCTTTTTCATCAAGTAGACA 58.703 33.333 0.00 0.00 0.00 3.41
3577 3770 7.497925 AACCTTTTTCATCAAGTAGACAGAC 57.502 36.000 0.00 0.00 0.00 3.51
3666 3859 5.831997 GAAATACAAATTTCGGAGGATGGG 58.168 41.667 0.00 0.00 41.09 4.00
3667 3860 1.474330 ACAAATTTCGGAGGATGGGC 58.526 50.000 0.00 0.00 0.00 5.36
3693 3886 3.508793 CCTGAAAAGCAATCTGTCACCAT 59.491 43.478 0.00 0.00 0.00 3.55
3854 4055 5.982516 TGCTTATGTGAACAATTTGTGGAAC 59.017 36.000 2.13 3.11 37.35 3.62
3882 4083 7.420800 ACTTTATTATACCGACTTACTCCGTG 58.579 38.462 0.00 0.00 0.00 4.94
3987 4284 6.472686 ACTTAGTCTTGTCTCAAGTCAACT 57.527 37.500 8.93 7.98 0.00 3.16
4067 4364 6.534634 TCAGTATCACGAGATCTATCAGGAA 58.465 40.000 0.00 0.00 35.67 3.36
4194 5103 6.715344 GTGTATATCACAGTTTTTCACGGA 57.285 37.500 0.00 0.00 45.51 4.69
4231 5143 8.456471 GCTACAAAACTACGAAATATTTCCCTT 58.544 33.333 20.01 9.09 33.68 3.95
4266 5179 5.559148 ATTGGGAAATGCAAAAGGTGTTA 57.441 34.783 0.00 0.00 0.00 2.41
4368 5319 8.061304 ACTGTGGAACTCATTTATCCCATTAAT 58.939 33.333 0.00 0.00 38.04 1.40
4443 5394 7.944729 ATATGCAAGGTCTTGTCTTACATTT 57.055 32.000 11.71 0.81 42.31 2.32
4460 5411 5.751243 ACATTTGTTTCTTTCGTACTGCT 57.249 34.783 0.00 0.00 0.00 4.24
4464 5415 3.799366 TGTTTCTTTCGTACTGCTTCCA 58.201 40.909 0.00 0.00 0.00 3.53
4623 5574 2.153817 GGTTCCGTCTTACGTCGTTTTC 59.846 50.000 1.78 0.00 40.58 2.29
4693 6039 6.767524 TTTCTTGAAAACTGCCTCAACTTA 57.232 33.333 0.00 0.00 0.00 2.24
4694 6040 6.767524 TTCTTGAAAACTGCCTCAACTTAA 57.232 33.333 0.00 0.00 0.00 1.85
4695 6041 6.767524 TCTTGAAAACTGCCTCAACTTAAA 57.232 33.333 0.00 0.00 0.00 1.52
4746 6092 7.621428 ATCATGTTATCTTTGGTGAGTCAAG 57.379 36.000 0.00 0.00 0.00 3.02
4821 6173 7.712204 ATAAAATGGAAGGTAAATCACGGTT 57.288 32.000 0.00 0.00 0.00 4.44
4859 6211 0.038343 GTGGTCCAATTGCAACGCAT 60.038 50.000 0.00 0.00 38.76 4.73
4993 6358 4.519540 AACAAATCCTTGCACATACACC 57.480 40.909 0.00 0.00 35.84 4.16
5168 7280 2.729882 GTGCATTGCTTCTGCTTTTCTG 59.270 45.455 10.49 0.00 40.34 3.02
5264 7573 0.509929 CAGTGTATGATGATGGCGCG 59.490 55.000 0.00 0.00 0.00 6.86
5673 8203 4.576463 AGTGAAACCATGTCAAGAAGTCAC 59.424 41.667 0.00 0.00 37.80 3.67
5718 8248 4.522789 AGTGTTGTGTTTGAGAGTTTTGGT 59.477 37.500 0.00 0.00 0.00 3.67
5719 8249 4.621034 GTGTTGTGTTTGAGAGTTTTGGTG 59.379 41.667 0.00 0.00 0.00 4.17
5740 8270 7.957002 TGGTGTAGATCTCCTTGATTTATCTC 58.043 38.462 0.00 0.00 35.14 2.75
5754 8284 1.191535 TATCTCACCCGGTCACTTGG 58.808 55.000 0.00 0.00 0.00 3.61
5776 8307 3.024547 TGAACGTTTGGGATTTGACCAA 58.975 40.909 0.46 0.00 45.73 3.67
5833 8365 5.224888 ACGCGAGAATGACAAGTTTAGTTA 58.775 37.500 15.93 0.00 0.00 2.24
5847 8379 5.367302 AGTTTAGTTAACACGTAGGGCAAA 58.633 37.500 8.61 0.00 39.30 3.68
5853 8385 6.232692 AGTTAACACGTAGGGCAAATTTCTA 58.767 36.000 8.61 0.00 0.00 2.10
5915 8470 5.229423 TGCTTGCCAACTAAAATTGTCATC 58.771 37.500 0.00 0.00 0.00 2.92
5965 8525 2.658064 TTCGGGCGTTATCGGGGTT 61.658 57.895 0.00 0.00 37.56 4.11
6018 8578 7.831691 TCTCATGTATTTGGGAAGTTTCAAA 57.168 32.000 7.47 7.47 37.29 2.69
6202 8765 3.853355 AATTTGGTCAAAATGTGGGCA 57.147 38.095 0.00 0.00 38.52 5.36
6206 8769 3.634397 TGGTCAAAATGTGGGCAAAAA 57.366 38.095 0.00 0.00 0.00 1.94
6264 8827 9.014297 GTTCAAAGGCCATATATTAAGTAGCAT 57.986 33.333 5.01 0.00 0.00 3.79
6312 8886 8.663209 AATGCATCCTAGTCTCTATGAATACT 57.337 34.615 0.00 0.00 0.00 2.12
6317 8891 5.701750 TCCTAGTCTCTATGAATACTGACGC 59.298 44.000 0.00 0.00 0.00 5.19
6379 8953 5.186215 TGCAGCATATGGATAATTTGGATGG 59.814 40.000 4.56 0.00 0.00 3.51
6401 8975 4.202111 GGGGTGACAATTATTAGCGCAAAT 60.202 41.667 11.47 0.31 0.00 2.32
6402 8976 5.009210 GGGGTGACAATTATTAGCGCAAATA 59.991 40.000 11.47 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.433740 CCAGGCTAGTTTTAGGGGATCAC 60.434 52.174 0.00 0.00 0.00 3.06
1 2 2.777692 CCAGGCTAGTTTTAGGGGATCA 59.222 50.000 0.00 0.00 0.00 2.92
3 4 2.859951 ACCAGGCTAGTTTTAGGGGAT 58.140 47.619 0.00 0.00 0.00 3.85
4 5 2.354261 ACCAGGCTAGTTTTAGGGGA 57.646 50.000 0.00 0.00 0.00 4.81
5 6 3.451402 AAACCAGGCTAGTTTTAGGGG 57.549 47.619 5.18 0.00 33.73 4.79
6 7 5.077564 AGAAAAACCAGGCTAGTTTTAGGG 58.922 41.667 21.14 3.10 44.49 3.53
7 8 6.004574 AGAGAAAAACCAGGCTAGTTTTAGG 58.995 40.000 21.14 3.84 44.49 2.69
8 9 6.149640 GGAGAGAAAAACCAGGCTAGTTTTAG 59.850 42.308 21.14 0.00 44.49 1.85
9 10 6.002082 GGAGAGAAAAACCAGGCTAGTTTTA 58.998 40.000 21.14 0.00 44.49 1.52
10 11 4.827835 GGAGAGAAAAACCAGGCTAGTTTT 59.172 41.667 16.41 16.41 46.58 2.43
11 12 4.141251 TGGAGAGAAAAACCAGGCTAGTTT 60.141 41.667 5.18 5.18 39.07 2.66
12 13 3.394606 TGGAGAGAAAAACCAGGCTAGTT 59.605 43.478 0.00 0.00 0.00 2.24
13 14 2.979678 TGGAGAGAAAAACCAGGCTAGT 59.020 45.455 0.00 0.00 0.00 2.57
14 15 3.703001 TGGAGAGAAAAACCAGGCTAG 57.297 47.619 0.00 0.00 0.00 3.42
15 16 4.104102 TCTTTGGAGAGAAAAACCAGGCTA 59.896 41.667 0.00 0.00 35.08 3.93
16 17 3.117512 TCTTTGGAGAGAAAAACCAGGCT 60.118 43.478 0.00 0.00 35.08 4.58
17 18 3.222603 TCTTTGGAGAGAAAAACCAGGC 58.777 45.455 0.00 0.00 35.08 4.85
30 31 4.039609 ACTTTGAAATTGGGCTCTTTGGAG 59.960 41.667 0.00 0.00 42.18 3.86
99 101 5.685511 CCTTTTCAATAACACGTTTCAGGTG 59.314 40.000 0.00 0.00 39.65 4.00
114 116 6.294731 CGTTCTCAGGATTTTCCCTTTTCAAT 60.295 38.462 0.00 0.00 37.19 2.57
125 127 0.676782 CGCCCCGTTCTCAGGATTTT 60.677 55.000 0.00 0.00 0.00 1.82
132 134 4.047059 GTCGACGCCCCGTTCTCA 62.047 66.667 0.00 0.00 41.37 3.27
133 135 4.790861 GGTCGACGCCCCGTTCTC 62.791 72.222 9.92 0.00 41.37 2.87
157 159 3.688159 GCAAACCCAGCTGCCCAG 61.688 66.667 8.66 0.00 32.18 4.45
158 160 4.223125 AGCAAACCCAGCTGCCCA 62.223 61.111 8.66 0.00 41.61 5.36
163 165 2.599578 CTGGCAGCAAACCCAGCT 60.600 61.111 0.00 0.00 41.86 4.24
166 168 2.839609 TAGGCTGGCAGCAAACCCA 61.840 57.895 37.49 14.65 44.75 4.51
167 169 2.035626 TAGGCTGGCAGCAAACCC 59.964 61.111 37.49 21.50 44.75 4.11
168 170 2.343426 GGTAGGCTGGCAGCAAACC 61.343 63.158 37.49 34.97 44.75 3.27
169 171 2.343426 GGGTAGGCTGGCAGCAAAC 61.343 63.158 37.49 31.27 44.75 2.93
170 172 2.035626 GGGTAGGCTGGCAGCAAA 59.964 61.111 37.49 23.44 44.75 3.68
171 173 3.256178 TGGGTAGGCTGGCAGCAA 61.256 61.111 37.49 23.81 44.75 3.91
172 174 3.720601 CTGGGTAGGCTGGCAGCA 61.721 66.667 37.49 18.52 44.75 4.41
173 175 4.496336 CCTGGGTAGGCTGGCAGC 62.496 72.222 30.93 30.93 41.46 5.25
182 184 2.299521 CCTAGACTCGAACCTGGGTAG 58.700 57.143 0.00 0.00 0.00 3.18
183 185 1.684248 GCCTAGACTCGAACCTGGGTA 60.684 57.143 14.62 0.00 34.04 3.69
184 186 0.971447 GCCTAGACTCGAACCTGGGT 60.971 60.000 14.62 0.00 34.04 4.51
185 187 0.684805 AGCCTAGACTCGAACCTGGG 60.685 60.000 10.54 10.54 34.57 4.45
186 188 0.741915 GAGCCTAGACTCGAACCTGG 59.258 60.000 0.00 0.00 0.00 4.45
187 189 1.757682 AGAGCCTAGACTCGAACCTG 58.242 55.000 0.00 0.00 41.77 4.00
188 190 2.517998 AAGAGCCTAGACTCGAACCT 57.482 50.000 0.00 0.00 41.77 3.50
189 191 4.083908 CGTATAAGAGCCTAGACTCGAACC 60.084 50.000 0.00 0.00 41.77 3.62
190 192 4.511082 ACGTATAAGAGCCTAGACTCGAAC 59.489 45.833 0.00 0.00 41.77 3.95
191 193 4.510711 CACGTATAAGAGCCTAGACTCGAA 59.489 45.833 0.00 0.00 41.77 3.71
192 194 4.056740 CACGTATAAGAGCCTAGACTCGA 58.943 47.826 0.00 0.00 41.77 4.04
193 195 3.186817 CCACGTATAAGAGCCTAGACTCG 59.813 52.174 0.00 0.00 41.77 4.18
194 196 4.023878 CACCACGTATAAGAGCCTAGACTC 60.024 50.000 0.00 0.00 36.91 3.36
195 197 3.884091 CACCACGTATAAGAGCCTAGACT 59.116 47.826 0.00 0.00 0.00 3.24
196 198 3.550436 GCACCACGTATAAGAGCCTAGAC 60.550 52.174 0.00 0.00 0.00 2.59
197 199 2.621998 GCACCACGTATAAGAGCCTAGA 59.378 50.000 0.00 0.00 0.00 2.43
198 200 2.623889 AGCACCACGTATAAGAGCCTAG 59.376 50.000 0.00 0.00 0.00 3.02
199 201 2.621998 GAGCACCACGTATAAGAGCCTA 59.378 50.000 0.00 0.00 0.00 3.93
200 202 1.409427 GAGCACCACGTATAAGAGCCT 59.591 52.381 0.00 0.00 0.00 4.58
201 203 1.854227 GAGCACCACGTATAAGAGCC 58.146 55.000 0.00 0.00 0.00 4.70
202 204 1.478137 CGAGCACCACGTATAAGAGC 58.522 55.000 0.00 0.00 0.00 4.09
203 205 1.478137 GCGAGCACCACGTATAAGAG 58.522 55.000 0.00 0.00 0.00 2.85
204 206 0.248336 CGCGAGCACCACGTATAAGA 60.248 55.000 0.00 0.00 0.00 2.10
205 207 1.206745 CCGCGAGCACCACGTATAAG 61.207 60.000 8.23 0.00 0.00 1.73
206 208 1.226745 CCGCGAGCACCACGTATAA 60.227 57.895 8.23 0.00 0.00 0.98
207 209 2.055310 CTCCGCGAGCACCACGTATA 62.055 60.000 8.23 0.00 0.00 1.47
208 210 3.411418 CTCCGCGAGCACCACGTAT 62.411 63.158 8.23 0.00 0.00 3.06
209 211 4.111016 CTCCGCGAGCACCACGTA 62.111 66.667 8.23 0.00 0.00 3.57
212 214 2.665185 AAACTCCGCGAGCACCAC 60.665 61.111 8.23 0.00 32.04 4.16
213 215 2.357034 GAAACTCCGCGAGCACCA 60.357 61.111 8.23 0.00 32.04 4.17
214 216 2.048127 AGAAACTCCGCGAGCACC 60.048 61.111 8.23 0.00 32.04 5.01
215 217 2.095252 GGAGAAACTCCGCGAGCAC 61.095 63.158 8.23 0.00 41.08 4.40
216 218 2.261671 GGAGAAACTCCGCGAGCA 59.738 61.111 8.23 0.00 41.08 4.26
225 227 8.674607 CGTTGGCTTTTATTTATAGGAGAAACT 58.325 33.333 0.00 0.00 0.00 2.66
226 228 8.671028 TCGTTGGCTTTTATTTATAGGAGAAAC 58.329 33.333 0.00 0.00 0.00 2.78
227 229 8.795842 TCGTTGGCTTTTATTTATAGGAGAAA 57.204 30.769 0.00 0.00 0.00 2.52
228 230 7.497909 CCTCGTTGGCTTTTATTTATAGGAGAA 59.502 37.037 0.00 0.00 0.00 2.87
229 231 6.990349 CCTCGTTGGCTTTTATTTATAGGAGA 59.010 38.462 0.00 0.00 0.00 3.71
230 232 6.204882 CCCTCGTTGGCTTTTATTTATAGGAG 59.795 42.308 0.00 0.00 0.00 3.69
231 233 6.059484 CCCTCGTTGGCTTTTATTTATAGGA 58.941 40.000 0.00 0.00 0.00 2.94
232 234 5.826208 ACCCTCGTTGGCTTTTATTTATAGG 59.174 40.000 0.00 0.00 0.00 2.57
233 235 6.937436 ACCCTCGTTGGCTTTTATTTATAG 57.063 37.500 0.00 0.00 0.00 1.31
234 236 8.441312 CTAACCCTCGTTGGCTTTTATTTATA 57.559 34.615 0.00 0.00 33.17 0.98
235 237 7.329588 CTAACCCTCGTTGGCTTTTATTTAT 57.670 36.000 0.00 0.00 33.17 1.40
236 238 6.746745 CTAACCCTCGTTGGCTTTTATTTA 57.253 37.500 0.00 0.00 33.17 1.40
237 239 5.638596 CTAACCCTCGTTGGCTTTTATTT 57.361 39.130 0.00 0.00 33.17 1.40
254 256 0.611062 GACCAACCCAAGGGCTAACC 60.611 60.000 4.70 0.00 39.32 2.85
255 257 0.404426 AGACCAACCCAAGGGCTAAC 59.596 55.000 4.70 0.00 44.68 2.34
256 258 2.877150 AGACCAACCCAAGGGCTAA 58.123 52.632 4.70 0.00 44.68 3.09
257 259 4.681624 AGACCAACCCAAGGGCTA 57.318 55.556 4.70 0.00 44.68 3.93
259 261 0.251787 AATGAGACCAACCCAAGGGC 60.252 55.000 4.70 0.00 39.32 5.19
260 262 2.309136 AAATGAGACCAACCCAAGGG 57.691 50.000 2.91 2.91 42.03 3.95
280 282 6.045955 CGAGTGGATTTTCCCTTTTCAAAAA 58.954 36.000 0.00 0.00 35.03 1.94
281 283 5.596845 CGAGTGGATTTTCCCTTTTCAAAA 58.403 37.500 0.00 0.00 35.03 2.44
282 284 4.500716 GCGAGTGGATTTTCCCTTTTCAAA 60.501 41.667 0.00 0.00 35.03 2.69
283 285 3.005367 GCGAGTGGATTTTCCCTTTTCAA 59.995 43.478 0.00 0.00 35.03 2.69
284 286 2.556622 GCGAGTGGATTTTCCCTTTTCA 59.443 45.455 0.00 0.00 35.03 2.69
285 287 2.414161 CGCGAGTGGATTTTCCCTTTTC 60.414 50.000 0.00 0.00 35.03 2.29
286 288 1.539827 CGCGAGTGGATTTTCCCTTTT 59.460 47.619 0.00 0.00 35.03 2.27
287 289 1.165270 CGCGAGTGGATTTTCCCTTT 58.835 50.000 0.00 0.00 35.03 3.11
288 290 0.676782 CCGCGAGTGGATTTTCCCTT 60.677 55.000 8.23 0.00 35.03 3.95
289 291 1.078426 CCGCGAGTGGATTTTCCCT 60.078 57.895 8.23 0.00 35.03 4.20
290 292 0.958876 AACCGCGAGTGGATTTTCCC 60.959 55.000 8.23 0.00 35.03 3.97
291 293 0.879090 AAACCGCGAGTGGATTTTCC 59.121 50.000 8.23 0.00 36.96 3.13
292 294 1.401018 CCAAACCGCGAGTGGATTTTC 60.401 52.381 8.23 0.00 34.05 2.29
293 295 0.596082 CCAAACCGCGAGTGGATTTT 59.404 50.000 8.23 0.00 34.05 1.82
294 296 0.536460 ACCAAACCGCGAGTGGATTT 60.536 50.000 23.74 6.24 36.23 2.17
295 297 0.322322 TACCAAACCGCGAGTGGATT 59.678 50.000 23.74 9.43 36.23 3.01
296 298 0.539986 ATACCAAACCGCGAGTGGAT 59.460 50.000 23.74 12.82 36.23 3.41
297 299 0.108520 GATACCAAACCGCGAGTGGA 60.109 55.000 23.74 11.47 36.23 4.02
298 300 0.390603 TGATACCAAACCGCGAGTGG 60.391 55.000 8.23 14.51 38.46 4.00
299 301 1.434555 TTGATACCAAACCGCGAGTG 58.565 50.000 8.23 1.57 0.00 3.51
300 302 2.172851 TTTGATACCAAACCGCGAGT 57.827 45.000 8.23 0.00 37.36 4.18
321 323 6.114089 TCGAAAACGGGGTTTATCATTGATA 58.886 36.000 2.14 2.14 34.43 2.15
329 331 7.451501 TTCTATTTTCGAAAACGGGGTTTAT 57.548 32.000 24.68 8.89 34.43 1.40
370 372 2.887152 GAGGCCTTATTTAGCATGGGTG 59.113 50.000 6.77 0.00 0.00 4.61
376 378 5.754782 TGATTTCTGAGGCCTTATTTAGCA 58.245 37.500 6.77 0.00 0.00 3.49
407 409 1.851304 TAGCCAGCCCCATCTTTTTG 58.149 50.000 0.00 0.00 0.00 2.44
414 416 4.197559 TCATTTAATTAGCCAGCCCCAT 57.802 40.909 0.00 0.00 0.00 4.00
466 468 8.190326 ACCGTCATAAACTCATATCCTTATCA 57.810 34.615 0.00 0.00 0.00 2.15
469 471 9.923143 CATAACCGTCATAAACTCATATCCTTA 57.077 33.333 0.00 0.00 0.00 2.69
475 477 7.068962 TCCTCACATAACCGTCATAAACTCATA 59.931 37.037 0.00 0.00 0.00 2.15
476 478 6.049149 CCTCACATAACCGTCATAAACTCAT 58.951 40.000 0.00 0.00 0.00 2.90
477 479 5.186215 TCCTCACATAACCGTCATAAACTCA 59.814 40.000 0.00 0.00 0.00 3.41
478 480 5.657474 TCCTCACATAACCGTCATAAACTC 58.343 41.667 0.00 0.00 0.00 3.01
479 481 5.670792 TCCTCACATAACCGTCATAAACT 57.329 39.130 0.00 0.00 0.00 2.66
480 482 6.920569 ATTCCTCACATAACCGTCATAAAC 57.079 37.500 0.00 0.00 0.00 2.01
481 483 9.104965 CTTTATTCCTCACATAACCGTCATAAA 57.895 33.333 0.00 0.00 0.00 1.40
482 484 8.262227 ACTTTATTCCTCACATAACCGTCATAA 58.738 33.333 0.00 0.00 0.00 1.90
571 573 5.007626 GCTTGTGTCTGTACTGATGTTCAAA 59.992 40.000 5.69 0.00 0.00 2.69
574 576 3.121944 CGCTTGTGTCTGTACTGATGTTC 59.878 47.826 5.69 0.00 0.00 3.18
575 577 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
576 578 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
578 580 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
579 581 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
580 582 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
581 583 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
582 584 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
583 585 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
585 587 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
587 589 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
588 590 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
589 591 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
590 592 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
591 593 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
593 595 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
596 598 2.324860 TGTATGCGCGTGTATATGAGC 58.675 47.619 13.61 0.41 38.85 4.26
597 599 4.621034 TGAATGTATGCGCGTGTATATGAG 59.379 41.667 13.61 0.00 0.00 2.90
598 600 4.384547 GTGAATGTATGCGCGTGTATATGA 59.615 41.667 13.61 1.21 0.00 2.15
599 601 4.434198 GGTGAATGTATGCGCGTGTATATG 60.434 45.833 13.61 0.00 0.00 1.78
601 603 3.054166 GGTGAATGTATGCGCGTGTATA 58.946 45.455 13.61 2.40 0.00 1.47
603 605 1.134936 AGGTGAATGTATGCGCGTGTA 60.135 47.619 13.61 0.62 0.00 2.90
604 606 0.391130 AGGTGAATGTATGCGCGTGT 60.391 50.000 13.61 0.00 0.00 4.49
605 607 0.301687 GAGGTGAATGTATGCGCGTG 59.698 55.000 13.61 0.00 0.00 5.34
607 609 2.134201 TAGAGGTGAATGTATGCGCG 57.866 50.000 0.00 0.00 0.00 6.86
608 610 3.653344 TCATAGAGGTGAATGTATGCGC 58.347 45.455 0.00 0.00 0.00 6.09
609 611 4.148871 CGTTCATAGAGGTGAATGTATGCG 59.851 45.833 0.00 0.00 39.99 4.73
611 613 5.049828 TGCGTTCATAGAGGTGAATGTATG 58.950 41.667 9.71 0.00 43.66 2.39
615 617 3.062639 GTGTGCGTTCATAGAGGTGAATG 59.937 47.826 4.85 4.85 44.27 2.67
616 618 3.262420 GTGTGCGTTCATAGAGGTGAAT 58.738 45.455 0.00 0.00 39.99 2.57
618 620 1.616374 TGTGTGCGTTCATAGAGGTGA 59.384 47.619 0.00 0.00 0.00 4.02
619 621 1.726791 GTGTGTGCGTTCATAGAGGTG 59.273 52.381 0.00 0.00 0.00 4.00
620 622 1.668919 CGTGTGTGCGTTCATAGAGGT 60.669 52.381 0.00 0.00 0.00 3.85
621 623 0.992072 CGTGTGTGCGTTCATAGAGG 59.008 55.000 0.00 0.00 0.00 3.69
622 624 0.366871 GCGTGTGTGCGTTCATAGAG 59.633 55.000 0.00 0.00 0.00 2.43
623 625 0.319125 TGCGTGTGTGCGTTCATAGA 60.319 50.000 0.00 0.00 37.81 1.98
624 626 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
625 627 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
626 628 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
627 629 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
628 630 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
629 631 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
632 634 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
633 635 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
634 636 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
635 637 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
636 638 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
637 639 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
638 640 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
639 641 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
640 642 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
641 643 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
642 644 0.759436 CGCTCATAGGGGTAGGGTGT 60.759 60.000 0.00 0.00 0.00 4.16
643 645 2.050269 CGCTCATAGGGGTAGGGTG 58.950 63.158 0.00 0.00 0.00 4.61
644 646 1.837499 GCGCTCATAGGGGTAGGGT 60.837 63.158 0.00 0.00 0.00 4.34
645 647 2.584391 GGCGCTCATAGGGGTAGGG 61.584 68.421 7.64 0.00 0.00 3.53
646 648 1.534235 AGGCGCTCATAGGGGTAGG 60.534 63.158 7.64 0.00 0.00 3.18
647 649 1.536943 GGAGGCGCTCATAGGGGTAG 61.537 65.000 7.64 0.00 31.08 3.18
648 650 1.533273 GGAGGCGCTCATAGGGGTA 60.533 63.158 7.64 0.00 31.08 3.69
649 651 2.844839 GGAGGCGCTCATAGGGGT 60.845 66.667 7.64 0.00 31.08 4.95
650 652 3.996124 CGGAGGCGCTCATAGGGG 61.996 72.222 7.64 0.00 31.08 4.79
651 653 2.028125 TTTCGGAGGCGCTCATAGGG 62.028 60.000 7.64 0.00 31.08 3.53
652 654 0.598680 CTTTCGGAGGCGCTCATAGG 60.599 60.000 7.64 0.00 31.08 2.57
653 655 0.385751 TCTTTCGGAGGCGCTCATAG 59.614 55.000 7.64 0.00 31.08 2.23
654 656 0.102481 GTCTTTCGGAGGCGCTCATA 59.898 55.000 7.64 0.00 31.08 2.15
655 657 1.153549 GTCTTTCGGAGGCGCTCAT 60.154 57.895 7.64 0.00 31.08 2.90
656 658 2.261671 GTCTTTCGGAGGCGCTCA 59.738 61.111 7.64 0.00 31.08 4.26
657 659 1.807573 CAGTCTTTCGGAGGCGCTC 60.808 63.158 7.64 2.45 34.31 5.03
658 660 2.219325 CTCAGTCTTTCGGAGGCGCT 62.219 60.000 7.64 0.00 35.32 5.92
659 661 1.807573 CTCAGTCTTTCGGAGGCGC 60.808 63.158 0.00 0.00 35.32 6.53
660 662 4.485554 CTCAGTCTTTCGGAGGCG 57.514 61.111 0.00 0.00 35.32 5.52
663 665 1.203523 CTCCACCTCAGTCTTTCGGAG 59.796 57.143 0.00 0.00 37.94 4.63
664 666 1.203013 TCTCCACCTCAGTCTTTCGGA 60.203 52.381 0.00 0.00 0.00 4.55
665 667 1.257743 TCTCCACCTCAGTCTTTCGG 58.742 55.000 0.00 0.00 0.00 4.30
666 668 3.601443 AATCTCCACCTCAGTCTTTCG 57.399 47.619 0.00 0.00 0.00 3.46
667 669 4.865365 CGTAAATCTCCACCTCAGTCTTTC 59.135 45.833 0.00 0.00 0.00 2.62
668 670 4.527038 TCGTAAATCTCCACCTCAGTCTTT 59.473 41.667 0.00 0.00 0.00 2.52
669 671 4.087182 TCGTAAATCTCCACCTCAGTCTT 58.913 43.478 0.00 0.00 0.00 3.01
670 672 3.698289 TCGTAAATCTCCACCTCAGTCT 58.302 45.455 0.00 0.00 0.00 3.24
671 673 4.082136 ACTTCGTAAATCTCCACCTCAGTC 60.082 45.833 0.00 0.00 0.00 3.51
672 674 3.833070 ACTTCGTAAATCTCCACCTCAGT 59.167 43.478 0.00 0.00 0.00 3.41
673 675 4.082190 TGACTTCGTAAATCTCCACCTCAG 60.082 45.833 0.00 0.00 0.00 3.35
674 676 3.830178 TGACTTCGTAAATCTCCACCTCA 59.170 43.478 0.00 0.00 0.00 3.86
675 677 4.174762 GTGACTTCGTAAATCTCCACCTC 58.825 47.826 0.00 0.00 0.00 3.85
676 678 3.056035 GGTGACTTCGTAAATCTCCACCT 60.056 47.826 0.00 0.00 39.58 4.00
677 679 3.259902 GGTGACTTCGTAAATCTCCACC 58.740 50.000 0.00 0.00 36.47 4.61
678 680 2.921754 CGGTGACTTCGTAAATCTCCAC 59.078 50.000 0.00 0.00 0.00 4.02
679 681 2.559668 ACGGTGACTTCGTAAATCTCCA 59.440 45.455 0.00 0.00 39.22 3.86
680 682 3.227810 ACGGTGACTTCGTAAATCTCC 57.772 47.619 0.00 0.00 39.22 3.71
681 683 4.349501 CCTACGGTGACTTCGTAAATCTC 58.650 47.826 0.00 0.00 41.62 2.75
682 684 3.428589 GCCTACGGTGACTTCGTAAATCT 60.429 47.826 0.00 0.00 41.62 2.40
683 685 2.856557 GCCTACGGTGACTTCGTAAATC 59.143 50.000 0.00 0.00 41.62 2.17
684 686 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
685 687 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
686 688 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
687 689 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
688 690 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
689 691 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
690 692 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
693 695 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
695 697 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
698 700 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
708 710 2.162921 GACGTTCCTGTCGACGACGA 62.163 60.000 27.94 11.96 46.56 4.20
709 711 1.791283 GACGTTCCTGTCGACGACG 60.791 63.158 22.06 22.91 41.53 5.12
710 712 0.452452 GAGACGTTCCTGTCGACGAC 60.452 60.000 20.97 20.97 43.70 4.34
711 713 1.572085 GGAGACGTTCCTGTCGACGA 61.572 60.000 11.62 0.00 43.70 4.20
712 714 1.154263 GGAGACGTTCCTGTCGACG 60.154 63.158 11.62 5.76 43.70 5.12
713 715 4.863984 GGAGACGTTCCTGTCGAC 57.136 61.111 9.11 9.11 43.70 4.20
721 723 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
722 724 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
723 725 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
724 726 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
725 727 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
726 728 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
727 729 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
728 730 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
729 731 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
730 732 0.745486 TGATGCGCATTCAGTGGGAG 60.745 55.000 26.12 0.00 43.02 4.30
731 733 1.026182 GTGATGCGCATTCAGTGGGA 61.026 55.000 26.12 0.00 43.02 4.37
732 734 1.430632 GTGATGCGCATTCAGTGGG 59.569 57.895 26.12 0.00 43.21 4.61
733 735 1.430632 GGTGATGCGCATTCAGTGG 59.569 57.895 26.12 0.00 0.00 4.00
734 736 1.061411 CGGTGATGCGCATTCAGTG 59.939 57.895 26.12 13.82 0.00 3.66
735 737 0.673333 TTCGGTGATGCGCATTCAGT 60.673 50.000 26.12 0.98 0.00 3.41
736 738 0.447406 TTTCGGTGATGCGCATTCAG 59.553 50.000 26.12 19.79 0.00 3.02
737 739 0.877743 TTTTCGGTGATGCGCATTCA 59.122 45.000 26.12 19.83 0.00 2.57
738 740 2.111756 GATTTTCGGTGATGCGCATTC 58.888 47.619 26.12 19.54 0.00 2.67
739 741 1.472082 TGATTTTCGGTGATGCGCATT 59.528 42.857 26.12 8.31 0.00 3.56
740 742 1.093972 TGATTTTCGGTGATGCGCAT 58.906 45.000 25.66 25.66 0.00 4.73
741 743 1.093972 ATGATTTTCGGTGATGCGCA 58.906 45.000 14.96 14.96 0.00 6.09
742 744 1.063912 TCATGATTTTCGGTGATGCGC 59.936 47.619 0.00 0.00 0.00 6.09
743 745 3.403613 TTCATGATTTTCGGTGATGCG 57.596 42.857 0.00 0.00 0.00 4.73
744 746 7.754069 TTTATTTCATGATTTTCGGTGATGC 57.246 32.000 0.00 0.00 0.00 3.91
745 747 8.971321 GGATTTATTTCATGATTTTCGGTGATG 58.029 33.333 0.00 0.00 0.00 3.07
746 748 8.694540 TGGATTTATTTCATGATTTTCGGTGAT 58.305 29.630 0.00 0.00 0.00 3.06
747 749 8.060931 TGGATTTATTTCATGATTTTCGGTGA 57.939 30.769 0.00 0.00 0.00 4.02
748 750 8.190122 TCTGGATTTATTTCATGATTTTCGGTG 58.810 33.333 0.00 0.00 0.00 4.94
749 751 8.292444 TCTGGATTTATTTCATGATTTTCGGT 57.708 30.769 0.00 0.00 0.00 4.69
750 752 9.585099 TTTCTGGATTTATTTCATGATTTTCGG 57.415 29.630 0.00 0.00 0.00 4.30
764 766 8.480501 AGTGCTTGCATTTATTTCTGGATTTAT 58.519 29.630 0.00 0.00 0.00 1.40
766 768 6.704310 AGTGCTTGCATTTATTTCTGGATTT 58.296 32.000 0.00 0.00 0.00 2.17
773 775 9.801873 TTAAATCCTAGTGCTTGCATTTATTTC 57.198 29.630 0.00 0.00 0.00 2.17
777 779 8.348285 AGTTTAAATCCTAGTGCTTGCATTTA 57.652 30.769 0.00 0.00 0.00 1.40
781 783 5.560724 AGAGTTTAAATCCTAGTGCTTGCA 58.439 37.500 0.00 0.00 0.00 4.08
783 785 8.616076 CCATTAGAGTTTAAATCCTAGTGCTTG 58.384 37.037 12.60 2.55 0.00 4.01
785 787 7.092399 ACCCATTAGAGTTTAAATCCTAGTGCT 60.092 37.037 12.60 0.00 0.00 4.40
787 789 8.893727 CAACCCATTAGAGTTTAAATCCTAGTG 58.106 37.037 11.75 11.75 0.00 2.74
788 790 8.053355 CCAACCCATTAGAGTTTAAATCCTAGT 58.947 37.037 0.00 0.00 0.00 2.57
790 792 7.935405 ACCAACCCATTAGAGTTTAAATCCTA 58.065 34.615 0.00 0.00 0.00 2.94
791 793 6.800890 ACCAACCCATTAGAGTTTAAATCCT 58.199 36.000 0.00 0.00 0.00 3.24
796 798 9.841295 GTGATATACCAACCCATTAGAGTTTAA 57.159 33.333 0.00 0.00 0.00 1.52
797 799 8.994500 TGTGATATACCAACCCATTAGAGTTTA 58.006 33.333 0.00 0.00 0.00 2.01
798 800 7.867921 TGTGATATACCAACCCATTAGAGTTT 58.132 34.615 0.00 0.00 0.00 2.66
799 801 7.446106 TGTGATATACCAACCCATTAGAGTT 57.554 36.000 0.00 0.00 0.00 3.01
800 802 7.446106 TTGTGATATACCAACCCATTAGAGT 57.554 36.000 0.00 0.00 0.00 3.24
801 803 7.607991 GGATTGTGATATACCAACCCATTAGAG 59.392 40.741 0.00 0.00 0.00 2.43
802 804 7.458397 GGATTGTGATATACCAACCCATTAGA 58.542 38.462 0.00 0.00 0.00 2.10
803 805 6.659242 GGGATTGTGATATACCAACCCATTAG 59.341 42.308 0.00 0.00 35.31 1.73
804 806 6.334237 AGGGATTGTGATATACCAACCCATTA 59.666 38.462 17.32 0.00 36.65 1.90
805 807 5.136048 AGGGATTGTGATATACCAACCCATT 59.864 40.000 17.32 0.73 36.65 3.16
809 811 5.568620 AGAGGGATTGTGATATACCAACC 57.431 43.478 0.00 0.00 0.00 3.77
810 812 6.935208 GGTTAGAGGGATTGTGATATACCAAC 59.065 42.308 0.00 0.00 0.00 3.77
811 813 6.617784 TGGTTAGAGGGATTGTGATATACCAA 59.382 38.462 0.00 0.00 0.00 3.67
812 814 6.147473 TGGTTAGAGGGATTGTGATATACCA 58.853 40.000 0.00 0.00 0.00 3.25
813 815 6.681729 TGGTTAGAGGGATTGTGATATACC 57.318 41.667 0.00 0.00 0.00 2.73
814 816 7.038302 TGGATGGTTAGAGGGATTGTGATATAC 60.038 40.741 0.00 0.00 0.00 1.47
816 818 5.851693 TGGATGGTTAGAGGGATTGTGATAT 59.148 40.000 0.00 0.00 0.00 1.63
817 819 5.223655 TGGATGGTTAGAGGGATTGTGATA 58.776 41.667 0.00 0.00 0.00 2.15
818 820 4.047166 TGGATGGTTAGAGGGATTGTGAT 58.953 43.478 0.00 0.00 0.00 3.06
819 821 3.459828 TGGATGGTTAGAGGGATTGTGA 58.540 45.455 0.00 0.00 0.00 3.58
820 822 3.931907 TGGATGGTTAGAGGGATTGTG 57.068 47.619 0.00 0.00 0.00 3.33
821 823 3.053619 GGTTGGATGGTTAGAGGGATTGT 60.054 47.826 0.00 0.00 0.00 2.71
822 824 3.053693 TGGTTGGATGGTTAGAGGGATTG 60.054 47.826 0.00 0.00 0.00 2.67
824 826 2.509964 GTGGTTGGATGGTTAGAGGGAT 59.490 50.000 0.00 0.00 0.00 3.85
826 828 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
827 829 3.282021 CATGTGGTTGGATGGTTAGAGG 58.718 50.000 0.00 0.00 0.00 3.69
828 830 3.955471 ACATGTGGTTGGATGGTTAGAG 58.045 45.455 0.00 0.00 0.00 2.43
829 831 4.380843 AACATGTGGTTGGATGGTTAGA 57.619 40.909 0.00 0.00 38.60 2.10
843 845 3.829886 ACTAATGCGAACCAACATGTG 57.170 42.857 0.00 0.00 0.00 3.21
844 846 6.821665 AGTAATACTAATGCGAACCAACATGT 59.178 34.615 0.00 0.00 0.00 3.21
845 847 7.011016 TGAGTAATACTAATGCGAACCAACATG 59.989 37.037 0.00 0.00 0.00 3.21
846 848 7.045416 TGAGTAATACTAATGCGAACCAACAT 58.955 34.615 0.00 0.00 0.00 2.71
847 849 6.399743 TGAGTAATACTAATGCGAACCAACA 58.600 36.000 0.00 0.00 0.00 3.33
849 851 7.324935 TCTTGAGTAATACTAATGCGAACCAA 58.675 34.615 0.00 0.00 0.00 3.67
850 852 6.869695 TCTTGAGTAATACTAATGCGAACCA 58.130 36.000 0.00 0.00 0.00 3.67
851 853 7.766219 TTCTTGAGTAATACTAATGCGAACC 57.234 36.000 0.00 0.00 0.00 3.62
852 854 9.084164 TCTTTCTTGAGTAATACTAATGCGAAC 57.916 33.333 0.00 0.00 0.00 3.95
853 855 9.817809 ATCTTTCTTGAGTAATACTAATGCGAA 57.182 29.630 0.00 0.00 0.00 4.70
870 1029 6.626488 CGCGTGATTCATTTCTATCTTTCTTG 59.374 38.462 0.00 0.00 0.00 3.02
1035 1197 1.889454 CGCTGAGTCAAGGAGCTCT 59.111 57.895 14.64 0.00 33.22 4.09
1546 1708 6.417191 TTGTGCTTAAGTTAAAGGATAGCG 57.583 37.500 4.02 0.00 0.00 4.26
1692 1863 9.381038 TCTACCTCCATAATATTCCTATATGGC 57.619 37.037 8.71 0.00 38.00 4.40
1797 1970 1.751351 CCTGCCGTTACTGAGAGATCA 59.249 52.381 0.00 0.00 0.00 2.92
1798 1971 1.537135 GCCTGCCGTTACTGAGAGATC 60.537 57.143 0.00 0.00 0.00 2.75
1799 1972 0.461961 GCCTGCCGTTACTGAGAGAT 59.538 55.000 0.00 0.00 0.00 2.75
1801 1974 0.459237 CAGCCTGCCGTTACTGAGAG 60.459 60.000 0.00 0.00 31.67 3.20
1802 1975 0.898326 TCAGCCTGCCGTTACTGAGA 60.898 55.000 0.00 0.00 34.35 3.27
1803 1976 1.591703 TCAGCCTGCCGTTACTGAG 59.408 57.895 0.00 0.00 34.35 3.35
1804 1977 1.591703 CTCAGCCTGCCGTTACTGA 59.408 57.895 0.00 0.00 37.57 3.41
1805 1978 2.103042 GCTCAGCCTGCCGTTACTG 61.103 63.158 0.00 0.00 0.00 2.74
1806 1979 2.266055 GCTCAGCCTGCCGTTACT 59.734 61.111 0.00 0.00 0.00 2.24
1807 1980 2.047274 TGCTCAGCCTGCCGTTAC 60.047 61.111 0.00 0.00 0.00 2.50
1808 1981 2.047274 GTGCTCAGCCTGCCGTTA 60.047 61.111 0.00 0.00 0.00 3.18
1811 1984 4.711949 AAGGTGCTCAGCCTGCCG 62.712 66.667 0.00 0.00 36.30 5.69
1812 1985 2.749441 GAAGGTGCTCAGCCTGCC 60.749 66.667 0.00 0.00 36.30 4.85
1813 1986 2.749441 GGAAGGTGCTCAGCCTGC 60.749 66.667 0.00 0.00 36.30 4.85
1814 1987 0.538057 TTTGGAAGGTGCTCAGCCTG 60.538 55.000 0.00 0.00 36.30 4.85
1815 1988 0.407139 ATTTGGAAGGTGCTCAGCCT 59.593 50.000 0.00 0.00 38.11 4.58
1816 1989 1.260544 AATTTGGAAGGTGCTCAGCC 58.739 50.000 0.00 0.00 0.00 4.85
1817 1990 3.067320 GGATAATTTGGAAGGTGCTCAGC 59.933 47.826 0.00 0.00 0.00 4.26
1818 1991 4.272489 TGGATAATTTGGAAGGTGCTCAG 58.728 43.478 0.00 0.00 0.00 3.35
1819 1992 4.018506 TCTGGATAATTTGGAAGGTGCTCA 60.019 41.667 0.00 0.00 0.00 4.26
1820 1993 4.526970 TCTGGATAATTTGGAAGGTGCTC 58.473 43.478 0.00 0.00 0.00 4.26
1821 1994 4.591321 TCTGGATAATTTGGAAGGTGCT 57.409 40.909 0.00 0.00 0.00 4.40
1822 1995 5.452356 CCATTCTGGATAATTTGGAAGGTGC 60.452 44.000 0.00 0.00 40.96 5.01
1823 1996 5.893255 TCCATTCTGGATAATTTGGAAGGTG 59.107 40.000 0.00 0.00 42.67 4.00
1824 1997 6.091076 TCCATTCTGGATAATTTGGAAGGT 57.909 37.500 0.00 0.00 42.67 3.50
1838 2011 5.573219 TGCCCATTCTAATATCCATTCTGG 58.427 41.667 0.00 0.00 39.43 3.86
1839 2012 6.096423 CCATGCCCATTCTAATATCCATTCTG 59.904 42.308 0.00 0.00 0.00 3.02
1840 2013 6.192773 CCATGCCCATTCTAATATCCATTCT 58.807 40.000 0.00 0.00 0.00 2.40
1841 2014 5.954150 ACCATGCCCATTCTAATATCCATTC 59.046 40.000 0.00 0.00 0.00 2.67
1842 2015 5.907421 ACCATGCCCATTCTAATATCCATT 58.093 37.500 0.00 0.00 0.00 3.16
1843 2016 5.541258 ACCATGCCCATTCTAATATCCAT 57.459 39.130 0.00 0.00 0.00 3.41
1844 2017 6.245408 GTTACCATGCCCATTCTAATATCCA 58.755 40.000 0.00 0.00 0.00 3.41
1845 2018 5.354234 CGTTACCATGCCCATTCTAATATCC 59.646 44.000 0.00 0.00 0.00 2.59
1846 2019 6.170506 TCGTTACCATGCCCATTCTAATATC 58.829 40.000 0.00 0.00 0.00 1.63
1847 2020 6.121776 TCGTTACCATGCCCATTCTAATAT 57.878 37.500 0.00 0.00 0.00 1.28
1848 2021 5.547465 CTCGTTACCATGCCCATTCTAATA 58.453 41.667 0.00 0.00 0.00 0.98
1849 2022 4.389374 CTCGTTACCATGCCCATTCTAAT 58.611 43.478 0.00 0.00 0.00 1.73
1850 2023 3.804036 CTCGTTACCATGCCCATTCTAA 58.196 45.455 0.00 0.00 0.00 2.10
1851 2024 2.484770 GCTCGTTACCATGCCCATTCTA 60.485 50.000 0.00 0.00 0.00 2.10
1852 2025 1.747206 GCTCGTTACCATGCCCATTCT 60.747 52.381 0.00 0.00 0.00 2.40
1853 2026 0.663153 GCTCGTTACCATGCCCATTC 59.337 55.000 0.00 0.00 0.00 2.67
1854 2027 0.255890 AGCTCGTTACCATGCCCATT 59.744 50.000 0.00 0.00 0.00 3.16
1855 2028 0.255890 AAGCTCGTTACCATGCCCAT 59.744 50.000 0.00 0.00 0.00 4.00
1856 2029 0.906066 TAAGCTCGTTACCATGCCCA 59.094 50.000 0.00 0.00 0.00 5.36
1857 2030 2.256117 ATAAGCTCGTTACCATGCCC 57.744 50.000 0.00 0.00 0.00 5.36
1858 2031 2.287009 GCAATAAGCTCGTTACCATGCC 60.287 50.000 0.00 0.00 41.15 4.40
1859 2032 2.987046 GCAATAAGCTCGTTACCATGC 58.013 47.619 0.00 0.00 41.15 4.06
1874 2047 7.764443 AGCTAAAGTAACTCGATTTCAGCAATA 59.236 33.333 0.00 0.00 0.00 1.90
1879 2052 6.586463 TCACAGCTAAAGTAACTCGATTTCAG 59.414 38.462 0.00 0.00 0.00 3.02
1938 2111 2.223923 TGCCAAAAATGAAGGGAACACG 60.224 45.455 0.00 0.00 0.00 4.49
1967 2140 2.932187 GCATTAGCAAAAGCAAGGTGGG 60.932 50.000 0.00 0.00 41.58 4.61
1992 2180 3.560068 CCAGATAAACCGGCATAACTCAC 59.440 47.826 0.00 0.00 0.00 3.51
2017 2205 6.811253 TTTTGTGTTTCGTAATAGGCTCAT 57.189 33.333 0.00 0.00 0.00 2.90
2083 2271 5.073691 AGGATGGTATGGGGAACTTCTAATG 59.926 44.000 0.00 0.00 0.00 1.90
2143 2331 3.513462 TCAACGTGTTATTTGTCTGCG 57.487 42.857 0.00 0.00 0.00 5.18
2144 2332 9.716507 ATATAAATCAACGTGTTATTTGTCTGC 57.283 29.630 11.29 0.00 0.00 4.26
2373 2563 7.775397 TCAACACCAAACTACAGTTACTTAC 57.225 36.000 0.00 0.00 37.25 2.34
2497 2688 6.183360 TGCCACACTGCAATAGTACATATACT 60.183 38.462 0.00 0.00 40.62 2.12
2498 2689 5.989168 TGCCACACTGCAATAGTACATATAC 59.011 40.000 0.00 0.00 38.56 1.47
3188 3381 7.814107 ACAATTTGCCAACATCTATAACTTGTG 59.186 33.333 0.00 0.00 0.00 3.33
3469 3662 8.596781 AAGAGAAGCTAGGAAACAGAACTATA 57.403 34.615 0.00 0.00 0.00 1.31
3545 3738 9.346725 CTACTTGATGAAAAAGGTTTATGCTTC 57.653 33.333 0.00 0.00 0.00 3.86
3666 3859 0.807496 AGATTGCTTTTCAGGCTCGC 59.193 50.000 0.00 0.00 0.00 5.03
3667 3860 1.808945 ACAGATTGCTTTTCAGGCTCG 59.191 47.619 0.00 0.00 0.00 5.03
3693 3886 4.916041 ATTCCACCAGAAGATTCAGTCA 57.084 40.909 0.00 0.00 38.07 3.41
3780 3973 2.151502 TTCAAGGACAAAAGGTGGCA 57.848 45.000 0.00 0.00 36.72 4.92
3828 4029 5.534278 TCCACAAATTGTTCACATAAGCAGA 59.466 36.000 0.00 0.00 0.00 4.26
3854 4055 8.233190 CGGAGTAAGTCGGTATAATAAAGTAGG 58.767 40.741 0.00 0.00 0.00 3.18
3978 4275 8.432359 GGTCAAACTTAAAACAAAGTTGACTTG 58.568 33.333 19.40 10.02 46.40 3.16
3987 4284 8.664211 ACAAACTTGGTCAAACTTAAAACAAA 57.336 26.923 0.00 0.00 0.00 2.83
4140 5049 7.696992 TTTGGTCTTGTCTTAAGTCAAACTT 57.303 32.000 14.62 0.00 41.97 2.66
4191 5100 1.068250 GTAGCTAAGCTGGCCTCCG 59.932 63.158 3.32 0.00 40.10 4.63
4194 5103 2.040412 AGTTTTGTAGCTAAGCTGGCCT 59.960 45.455 3.32 0.00 40.10 5.19
4235 5147 9.883142 CCTTTTGCATTTCCCAATATTTAGTTA 57.117 29.630 0.00 0.00 0.00 2.24
4236 5148 8.382405 ACCTTTTGCATTTCCCAATATTTAGTT 58.618 29.630 0.00 0.00 0.00 2.24
4237 5149 7.823799 CACCTTTTGCATTTCCCAATATTTAGT 59.176 33.333 0.00 0.00 0.00 2.24
4238 5150 7.823799 ACACCTTTTGCATTTCCCAATATTTAG 59.176 33.333 0.00 0.00 0.00 1.85
4266 5179 1.094073 GCAGCGAGGATTCACAGCAT 61.094 55.000 0.00 0.00 0.00 3.79
4336 5249 7.331791 GGATAAATGAGTTCCACAGTTCTAGT 58.668 38.462 0.00 0.00 0.00 2.57
4337 5250 6.763610 GGGATAAATGAGTTCCACAGTTCTAG 59.236 42.308 0.00 0.00 0.00 2.43
4339 5252 5.014123 TGGGATAAATGAGTTCCACAGTTCT 59.986 40.000 0.00 0.00 0.00 3.01
4415 5366 7.816640 TGTAAGACAAGACCTTGCATATTTTC 58.183 34.615 9.48 0.00 44.03 2.29
4422 5373 4.887071 ACAAATGTAAGACAAGACCTTGCA 59.113 37.500 9.48 0.00 44.03 4.08
4443 5394 3.558418 GTGGAAGCAGTACGAAAGAAACA 59.442 43.478 0.00 0.00 0.00 2.83
4460 5411 1.909228 ACGGAAGTGTGGTGTGGAA 59.091 52.632 0.00 0.00 46.97 3.53
4590 5541 4.701956 AGACGGAACCTTGCATATTTTG 57.298 40.909 0.00 0.00 0.00 2.44
4623 5574 4.162690 CGGGAAGGGAGGGCGAAG 62.163 72.222 0.00 0.00 0.00 3.79
4682 6028 3.188159 AGACGTGTTTAAGTTGAGGCA 57.812 42.857 0.00 0.00 0.00 4.75
4693 6039 2.812011 GGTGAGCCAATAAGACGTGTTT 59.188 45.455 2.22 0.00 34.09 2.83
4694 6040 2.224426 TGGTGAGCCAATAAGACGTGTT 60.224 45.455 2.58 2.58 42.83 3.32
4695 6041 1.346395 TGGTGAGCCAATAAGACGTGT 59.654 47.619 0.00 0.00 42.83 4.49
4746 6092 8.779354 AGTATTTCCAACTGAATCAGTACTTC 57.221 34.615 17.04 2.95 44.62 3.01
4859 6211 8.815565 TTTGTTTATGACTAGATAATTGCCCA 57.184 30.769 0.00 0.00 0.00 5.36
5211 7323 0.036952 CACTCCTGCATCGACCAAGT 60.037 55.000 0.00 0.00 0.00 3.16
5264 7573 2.435059 GGGAGTTCACGCAGCTCC 60.435 66.667 8.84 8.84 45.92 4.70
5673 8203 6.468956 CACTATACAAAGCAAATAGGCAAACG 59.531 38.462 0.00 0.00 35.83 3.60
5718 8248 7.015682 GGGTGAGATAAATCAAGGAGATCTACA 59.984 40.741 7.93 0.00 35.39 2.74
5719 8249 7.382898 GGGTGAGATAAATCAAGGAGATCTAC 58.617 42.308 0.00 0.00 35.39 2.59
5754 8284 2.359531 TGGTCAAATCCCAAACGTTCAC 59.640 45.455 0.00 0.00 0.00 3.18
5776 8307 4.581868 CCATCCAAACATTTGATTTGCCT 58.418 39.130 5.91 0.00 40.55 4.75
5833 8365 3.439129 GCTAGAAATTTGCCCTACGTGTT 59.561 43.478 0.00 0.00 0.00 3.32
6000 8560 8.669946 TGGAAAATTTGAAACTTCCCAAATAC 57.330 30.769 14.60 0.00 40.78 1.89
6072 8634 3.695830 AAGTTTCGGCTCAACTGGATA 57.304 42.857 0.00 0.00 34.59 2.59
6274 8837 9.162764 GACTAGGATGCATTTTTAGTTTCTGTA 57.837 33.333 15.47 0.00 0.00 2.74
6276 8839 8.273780 AGACTAGGATGCATTTTTAGTTTCTG 57.726 34.615 15.47 0.00 0.00 3.02
6312 8886 0.178068 GCAGGAGGAATAAGGCGTCA 59.822 55.000 0.00 0.00 0.00 4.35
6317 8891 2.808202 CGTGGATGCAGGAGGAATAAGG 60.808 54.545 0.00 0.00 0.00 2.69
6379 8953 4.364415 TTTGCGCTAATAATTGTCACCC 57.636 40.909 9.73 0.00 0.00 4.61



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.