Multiple sequence alignment - TraesCS6B01G269200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G269200 chr6B 100.000 7991 0 0 1 7991 484979638 484987628 0.000000e+00 14757.0
1 TraesCS6B01G269200 chr6A 95.379 3852 110 22 1292 5134 475270256 475266464 0.000000e+00 6065.0
2 TraesCS6B01G269200 chr6A 95.014 2106 51 12 5233 7312 475266467 475264390 0.000000e+00 3258.0
3 TraesCS6B01G269200 chr6A 93.731 670 25 3 7339 7991 475263378 475262709 0.000000e+00 989.0
4 TraesCS6B01G269200 chr6A 89.067 375 30 10 38 402 475294039 475293666 9.450000e-124 455.0
5 TraesCS6B01G269200 chr6A 79.208 303 30 16 975 1258 475270537 475270249 6.370000e-41 180.0
6 TraesCS6B01G269200 chr6A 84.337 166 17 4 660 816 475292606 475292441 3.860000e-33 154.0
7 TraesCS6B01G269200 chr6D 87.172 2479 186 66 873 3292 335993577 335991172 0.000000e+00 2695.0
8 TraesCS6B01G269200 chr6D 91.451 1661 74 28 4705 6331 335989082 335987456 0.000000e+00 2218.0
9 TraesCS6B01G269200 chr6D 93.739 1134 58 7 3288 4411 335991014 335989884 0.000000e+00 1688.0
10 TraesCS6B01G269200 chr6D 94.272 838 25 9 6476 7312 335987458 335986643 0.000000e+00 1260.0
11 TraesCS6B01G269200 chr6D 94.307 685 22 8 7324 7991 335985476 335984792 0.000000e+00 1033.0
12 TraesCS6B01G269200 chr6D 90.566 371 28 7 38 402 335996234 335995865 1.210000e-132 484.0
13 TraesCS6B01G269200 chr6D 89.494 257 14 5 4415 4667 335989327 335989080 6.020000e-81 313.0
14 TraesCS6B01G269200 chr7A 91.803 244 15 4 397 636 159802424 159802182 1.280000e-87 335.0
15 TraesCS6B01G269200 chr7A 78.195 266 52 4 1750 2012 450569998 450569736 1.780000e-36 165.0
16 TraesCS6B01G269200 chr5A 90.323 248 18 5 394 636 85643232 85643478 3.600000e-83 320.0
17 TraesCS6B01G269200 chr5A 89.516 248 19 6 394 636 355051469 355051714 2.800000e-79 307.0
18 TraesCS6B01G269200 chr5A 82.540 189 18 7 3122 3297 260678754 260678568 1.390000e-32 152.0
19 TraesCS6B01G269200 chr1D 90.574 244 17 5 397 636 295958847 295959088 1.290000e-82 318.0
20 TraesCS6B01G269200 chr1A 90.574 244 18 4 397 636 111396639 111396397 1.290000e-82 318.0
21 TraesCS6B01G269200 chr1A 77.820 266 53 4 1750 2012 42882278 42882540 8.300000e-35 159.0
22 TraesCS6B01G269200 chr1A 84.211 114 13 4 3111 3222 208901920 208902030 1.100000e-18 106.0
23 TraesCS6B01G269200 chr1A 78.788 132 18 9 276 400 505074863 505074991 6.650000e-11 80.5
24 TraesCS6B01G269200 chr3A 89.960 249 17 6 394 636 279621240 279620994 1.670000e-81 315.0
25 TraesCS6B01G269200 chr4A 90.164 244 19 4 397 636 532347262 532347504 6.020000e-81 313.0
26 TraesCS6B01G269200 chr4A 89.516 248 20 5 394 636 614676324 614676570 7.790000e-80 309.0
27 TraesCS6B01G269200 chr4A 83.871 124 16 3 3173 3292 387080992 387080869 1.820000e-21 115.0
28 TraesCS6B01G269200 chr2A 90.164 244 19 4 397 636 613783353 613783111 6.020000e-81 313.0
29 TraesCS6B01G269200 chr2A 80.952 189 20 7 3121 3297 12357170 12357354 1.400000e-27 135.0
30 TraesCS6B01G269200 chr2A 78.261 207 20 15 3100 3289 208543300 208543498 8.480000e-20 110.0
31 TraesCS6B01G269200 chr2A 76.562 128 24 6 276 399 43540240 43540365 1.860000e-06 65.8
32 TraesCS6B01G269200 chr2A 90.244 41 3 1 707 746 51596969 51597009 1.400000e-02 52.8
33 TraesCS6B01G269200 chr3D 80.252 238 41 4 1778 2012 166288149 166288383 2.960000e-39 174.0
34 TraesCS6B01G269200 chr3D 84.211 57 8 1 713 768 120879935 120879879 4.000000e-03 54.7
35 TraesCS6B01G269200 chr4D 83.663 202 14 11 3109 3297 140903727 140903922 1.070000e-38 172.0
36 TraesCS6B01G269200 chrUn 78.571 266 51 4 1750 2012 75466035 75466297 3.830000e-38 171.0
37 TraesCS6B01G269200 chrUn 77.869 122 21 5 285 402 240178060 240178179 4.000000e-08 71.3
38 TraesCS6B01G269200 chrUn 77.869 122 21 5 285 402 256275753 256275872 4.000000e-08 71.3
39 TraesCS6B01G269200 chr7D 78.409 264 51 5 1752 2012 54567541 54567281 4.960000e-37 167.0
40 TraesCS6B01G269200 chr7D 82.036 167 16 4 3145 3297 312460000 312459834 6.510000e-26 130.0
41 TraesCS6B01G269200 chr2D 78.277 267 50 6 1750 2012 121215148 121214886 1.780000e-36 165.0
42 TraesCS6B01G269200 chr7B 78.992 238 44 4 1778 2012 515067847 515068081 2.990000e-34 158.0
43 TraesCS6B01G269200 chr7B 76.144 306 42 17 1349 1629 691500205 691500504 1.810000e-26 132.0
44 TraesCS6B01G269200 chr5D 80.952 189 19 8 3122 3297 162427174 162426990 5.030000e-27 134.0
45 TraesCS6B01G269200 chr5B 80.423 189 19 8 3122 3297 180039155 180039338 2.340000e-25 128.0
46 TraesCS6B01G269200 chr5B 81.818 99 15 3 305 400 41378640 41378738 6.650000e-11 80.5
47 TraesCS6B01G269200 chr5B 97.368 38 1 0 1349 1386 296252537 296252500 1.860000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G269200 chr6B 484979638 484987628 7990 False 14757.000000 14757 100.000000 1 7991 1 chr6B.!!$F1 7990
1 TraesCS6B01G269200 chr6A 475262709 475270537 7828 True 2623.000000 6065 90.833000 975 7991 4 chr6A.!!$R1 7016
2 TraesCS6B01G269200 chr6A 475292441 475294039 1598 True 304.500000 455 86.702000 38 816 2 chr6A.!!$R2 778
3 TraesCS6B01G269200 chr6D 335984792 335996234 11442 True 1384.428571 2695 91.571571 38 7991 7 chr6D.!!$R1 7953

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 1811 0.034477 AATCCGGTGAATGGGTGGAC 60.034 55.000 0.00 0.00 0.00 4.02 F
1393 3307 0.108207 CCCTAATCCTCTGCTGCTGG 59.892 60.000 6.69 3.88 0.00 4.85 F
1528 3443 0.651031 GCGACAAAGAATCTACCGCC 59.349 55.000 0.00 0.00 35.79 6.13 F
2776 4701 1.112113 TCGCTTCTATTTCTCCCGCT 58.888 50.000 0.00 0.00 0.00 5.52 F
3593 5721 0.247736 CCTCTCCGGTCAACAAGAGG 59.752 60.000 17.54 17.54 46.51 3.69 F
3600 5728 1.070786 GTCAACAAGAGGGTCCGCA 59.929 57.895 0.00 0.00 0.00 5.69 F
5369 8064 2.676463 GCTGTGTCTCACTCCTGGAATC 60.676 54.545 0.00 0.00 35.11 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1975 3891 0.684153 AAGTGCCACACAGCAACCTT 60.684 50.000 0.00 0.0 46.19 3.50 R
2715 4640 0.537371 CTTGTGGAGGGGTCACCAAC 60.537 60.000 0.00 0.0 43.89 3.77 R
3455 5579 0.535102 CAGTCGCACCTTCCCTGTTT 60.535 55.000 0.00 0.0 0.00 2.83 R
3610 5738 0.534877 TGGTGATGCGCAACAGAAGT 60.535 50.000 21.54 0.0 39.87 3.01 R
5183 7877 1.192428 AACTGTAGGCGTAGGGAAGG 58.808 55.000 0.00 0.0 0.00 3.46 R
5402 8097 3.816994 TGCATCATTTATCTGCTCTGCT 58.183 40.909 0.00 0.0 36.84 4.24 R
7181 10040 0.248134 GGTTAACAAACGCACGCACA 60.248 50.000 8.10 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.995466 CACAACCATGCACTAACCAG 57.005 50.000 0.00 0.00 0.00 4.00
20 21 2.229792 CACAACCATGCACTAACCAGT 58.770 47.619 0.00 0.00 34.42 4.00
21 22 2.622942 CACAACCATGCACTAACCAGTT 59.377 45.455 0.00 0.00 30.46 3.16
22 23 2.884639 ACAACCATGCACTAACCAGTTC 59.115 45.455 0.00 0.00 30.46 3.01
23 24 3.149196 CAACCATGCACTAACCAGTTCT 58.851 45.455 0.00 0.00 30.46 3.01
24 25 3.059352 ACCATGCACTAACCAGTTCTC 57.941 47.619 0.00 0.00 30.46 2.87
25 26 2.371841 ACCATGCACTAACCAGTTCTCA 59.628 45.455 0.00 0.00 30.46 3.27
26 27 3.181445 ACCATGCACTAACCAGTTCTCAA 60.181 43.478 0.00 0.00 30.46 3.02
27 28 3.820467 CCATGCACTAACCAGTTCTCAAA 59.180 43.478 0.00 0.00 30.46 2.69
28 29 4.278170 CCATGCACTAACCAGTTCTCAAAA 59.722 41.667 0.00 0.00 30.46 2.44
29 30 5.221224 CCATGCACTAACCAGTTCTCAAAAA 60.221 40.000 0.00 0.00 30.46 1.94
98 99 7.047891 ACACCGTCTTCAACATGATATACATT 58.952 34.615 0.00 0.00 37.07 2.71
127 128 1.388547 AGAAAGCACCGCAAGAACAA 58.611 45.000 0.00 0.00 43.02 2.83
194 196 4.648307 CCGACTACAATAACCTACTCCCTT 59.352 45.833 0.00 0.00 0.00 3.95
196 198 6.040878 CGACTACAATAACCTACTCCCTTTG 58.959 44.000 0.00 0.00 0.00 2.77
221 227 8.243426 TGCTTAATATCAGATGTTTTTGACACC 58.757 33.333 0.00 0.00 42.04 4.16
227 233 5.301555 TCAGATGTTTTTGACACCGTCATA 58.698 37.500 0.00 0.00 42.40 2.15
353 361 1.578703 ACCCCTTTTTCCAACCTTCCT 59.421 47.619 0.00 0.00 0.00 3.36
355 363 2.425683 CCCCTTTTTCCAACCTTCCTCA 60.426 50.000 0.00 0.00 0.00 3.86
430 1568 4.516698 TCTCTTTTGCCACTCTTAGCTTTG 59.483 41.667 0.00 0.00 0.00 2.77
431 1569 4.460263 TCTTTTGCCACTCTTAGCTTTGA 58.540 39.130 0.00 0.00 0.00 2.69
432 1570 4.275936 TCTTTTGCCACTCTTAGCTTTGAC 59.724 41.667 0.00 0.00 0.00 3.18
433 1571 2.928801 TGCCACTCTTAGCTTTGACA 57.071 45.000 0.00 0.00 0.00 3.58
434 1572 3.207265 TGCCACTCTTAGCTTTGACAA 57.793 42.857 0.00 0.00 0.00 3.18
435 1573 3.754965 TGCCACTCTTAGCTTTGACAAT 58.245 40.909 0.00 0.00 0.00 2.71
436 1574 4.144297 TGCCACTCTTAGCTTTGACAATT 58.856 39.130 0.00 0.00 0.00 2.32
437 1575 5.312895 TGCCACTCTTAGCTTTGACAATTA 58.687 37.500 0.00 0.00 0.00 1.40
438 1576 5.945784 TGCCACTCTTAGCTTTGACAATTAT 59.054 36.000 0.00 0.00 0.00 1.28
472 1610 8.819643 CCATTTCATGGCAAAATCAAAAATTT 57.180 26.923 0.00 0.00 44.70 1.82
473 1611 8.917655 CCATTTCATGGCAAAATCAAAAATTTC 58.082 29.630 0.00 0.00 44.70 2.17
477 1618 7.640852 TCATGGCAAAATCAAAAATTTCAGTG 58.359 30.769 0.00 0.00 0.00 3.66
484 1625 9.947669 CAAAATCAAAAATTTCAGTGGCAATTA 57.052 25.926 0.00 0.00 0.00 1.40
511 1671 9.330063 TGATATATTGTCAAAAGCTAAGAGTGG 57.670 33.333 0.00 0.00 0.00 4.00
514 1674 2.878406 TGTCAAAAGCTAAGAGTGGCAC 59.122 45.455 10.29 10.29 32.62 5.01
519 1679 2.175878 AGCTAAGAGTGGCACAAGTG 57.824 50.000 21.41 6.84 44.16 3.16
552 1712 3.815856 TTTGCTTTTGCCACAGAATGA 57.184 38.095 0.00 0.00 46.87 2.57
597 1757 7.284489 ACAACTAAGAGTGGCAAAAGTGAAATA 59.716 33.333 0.00 0.00 0.00 1.40
615 1775 8.184192 AGTGAAATATCAAAATCTAAAGTGGCG 58.816 33.333 0.00 0.00 37.30 5.69
620 1780 8.958119 ATATCAAAATCTAAAGTGGCGTAAGA 57.042 30.769 0.00 0.00 43.02 2.10
635 1795 7.169140 AGTGGCGTAAGAAAAATTGACAAAATC 59.831 33.333 0.00 0.00 43.02 2.17
636 1796 6.422400 TGGCGTAAGAAAAATTGACAAAATCC 59.578 34.615 0.00 0.00 43.02 3.01
637 1797 6.399564 GGCGTAAGAAAAATTGACAAAATCCG 60.400 38.462 0.00 0.00 43.02 4.18
639 1799 6.639279 CGTAAGAAAAATTGACAAAATCCGGT 59.361 34.615 0.00 0.00 43.02 5.28
641 1801 6.155475 AGAAAAATTGACAAAATCCGGTGA 57.845 33.333 0.00 0.00 0.00 4.02
642 1802 6.578023 AGAAAAATTGACAAAATCCGGTGAA 58.422 32.000 0.00 0.00 0.00 3.18
643 1803 7.216494 AGAAAAATTGACAAAATCCGGTGAAT 58.784 30.769 0.00 0.00 0.00 2.57
644 1804 6.783892 AAAATTGACAAAATCCGGTGAATG 57.216 33.333 0.00 0.00 0.00 2.67
645 1805 3.932545 TTGACAAAATCCGGTGAATGG 57.067 42.857 0.00 0.00 0.00 3.16
646 1806 2.166829 TGACAAAATCCGGTGAATGGG 58.833 47.619 0.00 0.00 0.00 4.00
647 1807 2.167662 GACAAAATCCGGTGAATGGGT 58.832 47.619 0.00 0.00 0.00 4.51
648 1808 1.892474 ACAAAATCCGGTGAATGGGTG 59.108 47.619 0.00 0.00 0.00 4.61
649 1809 1.204467 CAAAATCCGGTGAATGGGTGG 59.796 52.381 0.00 0.00 0.00 4.61
650 1810 0.701731 AAATCCGGTGAATGGGTGGA 59.298 50.000 0.00 0.00 0.00 4.02
651 1811 0.034477 AATCCGGTGAATGGGTGGAC 60.034 55.000 0.00 0.00 0.00 4.02
656 1816 1.000717 CGGTGAATGGGTGGACAAAAC 60.001 52.381 0.00 0.00 0.00 2.43
657 1817 1.343142 GGTGAATGGGTGGACAAAACC 59.657 52.381 0.00 0.00 36.94 3.27
658 1818 2.035632 GTGAATGGGTGGACAAAACCA 58.964 47.619 0.00 0.00 39.65 3.67
659 1819 2.432510 GTGAATGGGTGGACAAAACCAA 59.567 45.455 0.00 0.00 41.87 3.67
660 1820 3.107601 TGAATGGGTGGACAAAACCAAA 58.892 40.909 0.00 0.00 41.87 3.28
661 1821 3.519510 TGAATGGGTGGACAAAACCAAAA 59.480 39.130 0.00 0.00 41.87 2.44
662 1822 4.164988 TGAATGGGTGGACAAAACCAAAAT 59.835 37.500 0.00 0.00 41.87 1.82
663 1823 3.828875 TGGGTGGACAAAACCAAAATC 57.171 42.857 0.00 0.00 41.87 2.17
664 1824 2.436173 TGGGTGGACAAAACCAAAATCC 59.564 45.455 0.00 0.00 41.87 3.01
665 1825 2.547007 GGGTGGACAAAACCAAAATCCG 60.547 50.000 0.00 0.00 41.87 4.18
677 1861 4.066490 ACCAAAATCCGTCGTGTTTGATA 58.934 39.130 11.81 0.00 33.70 2.15
678 1862 4.698304 ACCAAAATCCGTCGTGTTTGATAT 59.302 37.500 11.81 0.00 33.70 1.63
679 1863 5.182380 ACCAAAATCCGTCGTGTTTGATATT 59.818 36.000 11.81 0.00 33.70 1.28
740 1932 4.889112 ATGGCCAGCTCCCGCATG 62.889 66.667 13.05 0.00 39.10 4.06
787 1980 3.414700 CAGACGGACAAGCGGTGC 61.415 66.667 0.00 0.00 33.95 5.01
810 2003 4.324022 CCCGGTTTAGGTTTTAGGAGATGT 60.324 45.833 0.00 0.00 0.00 3.06
836 2029 4.195225 ACCCACAAATGAAAAACAACGT 57.805 36.364 0.00 0.00 0.00 3.99
844 2037 3.577649 TGAAAAACAACGTGGCAAAGA 57.422 38.095 0.00 0.00 0.00 2.52
867 2060 4.036852 AGTGCTTTGGCTCTAGTTCAAAAC 59.963 41.667 0.00 0.00 40.01 2.43
868 2061 3.951037 TGCTTTGGCTCTAGTTCAAAACA 59.049 39.130 0.00 0.00 39.59 2.83
869 2062 4.400884 TGCTTTGGCTCTAGTTCAAAACAA 59.599 37.500 7.97 0.00 39.59 2.83
870 2063 5.068987 TGCTTTGGCTCTAGTTCAAAACAAT 59.931 36.000 7.97 0.00 39.59 2.71
871 2064 5.403466 GCTTTGGCTCTAGTTCAAAACAATG 59.597 40.000 0.00 0.00 35.22 2.82
884 2775 4.128643 CAAAACAATGTGGCTGTGGAATT 58.871 39.130 0.00 0.00 0.00 2.17
887 2778 2.559668 ACAATGTGGCTGTGGAATTCAG 59.440 45.455 7.93 0.00 36.18 3.02
889 2780 2.363306 TGTGGCTGTGGAATTCAGTT 57.637 45.000 7.93 0.00 35.60 3.16
895 2786 3.760684 GGCTGTGGAATTCAGTTCTGAAT 59.239 43.478 18.64 18.64 39.93 2.57
901 2792 5.237344 GTGGAATTCAGTTCTGAATATCGGG 59.763 44.000 22.79 0.00 37.52 5.14
914 2805 0.694783 TATCGGGGCCACCAATACCA 60.695 55.000 4.39 0.00 40.22 3.25
919 2810 0.614697 GGGCCACCAATACCAAAGCT 60.615 55.000 4.39 0.00 36.50 3.74
934 2825 4.020485 ACCAAAGCTGTATCGAAACTACCT 60.020 41.667 0.00 0.00 0.00 3.08
958 2856 2.921797 GCCCGCGGTTGCCTAAAAA 61.922 57.895 26.12 0.00 38.08 1.94
1062 2960 2.352960 CAGTCCTTCTATCCAAAAGCGC 59.647 50.000 0.00 0.00 0.00 5.92
1063 2961 1.327764 GTCCTTCTATCCAAAAGCGCG 59.672 52.381 0.00 0.00 0.00 6.86
1114 3028 2.272797 CCCTCCGTCTCTCTCCGT 59.727 66.667 0.00 0.00 0.00 4.69
1118 3032 1.764180 CTCCGTCTCTCTCCGTACGC 61.764 65.000 10.49 0.00 34.13 4.42
1119 3033 1.814586 CCGTCTCTCTCCGTACGCT 60.815 63.158 10.49 0.00 34.13 5.07
1174 3088 3.844090 GCTCTCTCCTGGACCCGC 61.844 72.222 0.00 0.00 0.00 6.13
1284 3198 0.401979 TCCCCATCCTCCTCCCATTC 60.402 60.000 0.00 0.00 0.00 2.67
1309 3223 1.237163 CCTCCTCCTGAGCCCCATA 59.763 63.158 0.00 0.00 39.98 2.74
1334 3248 4.029809 CTTTCCCCGTCGCCCCTT 62.030 66.667 0.00 0.00 0.00 3.95
1393 3307 0.108207 CCCTAATCCTCTGCTGCTGG 59.892 60.000 6.69 3.88 0.00 4.85
1477 3392 3.554934 TGATTGCAGTGGTGTTCTTCTT 58.445 40.909 0.00 0.00 0.00 2.52
1511 3426 5.095490 GGTAATTCTTCATCCAAACTTGCG 58.905 41.667 0.00 0.00 0.00 4.85
1521 3436 4.223320 TCCAAACTTGCGACAAAGAATC 57.777 40.909 0.00 0.00 0.00 2.52
1528 3443 0.651031 GCGACAAAGAATCTACCGCC 59.349 55.000 0.00 0.00 35.79 6.13
1605 3521 6.157904 CAGATAGTAGCAGAATCATGTCAGG 58.842 44.000 0.00 0.00 0.00 3.86
1616 3532 7.270779 CAGAATCATGTCAGGTCAATTAGAGA 58.729 38.462 0.00 0.00 0.00 3.10
1651 3567 7.689953 CATGGATGCTGAAAATAAAAGTAGC 57.310 36.000 0.00 0.00 0.00 3.58
1684 3600 9.301153 AGAAGAATTGTGTTGACAAAATTGTAC 57.699 29.630 15.13 7.42 45.23 2.90
2086 4005 1.941325 CCAAATGGTACGGCTCTCTC 58.059 55.000 0.00 0.00 0.00 3.20
2087 4006 1.482593 CCAAATGGTACGGCTCTCTCT 59.517 52.381 0.00 0.00 0.00 3.10
2293 4213 2.422519 CCAGCCTCCATATTTGCAGTCT 60.423 50.000 0.00 0.00 0.00 3.24
2353 4273 3.081061 TGTGTCCCGATGGAAATTTCAG 58.919 45.455 19.49 7.67 44.07 3.02
2373 4293 1.280421 GGCTGTGGTCTTCATCCTCTT 59.720 52.381 0.00 0.00 0.00 2.85
2595 4519 4.687215 GAGCACTCGCAGCCACCA 62.687 66.667 0.00 0.00 42.27 4.17
2596 4520 3.965539 GAGCACTCGCAGCCACCAT 62.966 63.158 0.00 0.00 42.27 3.55
2753 4678 3.435186 GAGCGCCAAACCCTCTGC 61.435 66.667 2.29 0.00 0.00 4.26
2776 4701 1.112113 TCGCTTCTATTTCTCCCGCT 58.888 50.000 0.00 0.00 0.00 5.52
2922 4847 2.672195 GCAACCCTAGCAAGATTTGTGC 60.672 50.000 0.00 0.00 42.55 4.57
3118 5062 2.045926 AGCGGCACAAGATGGGAC 60.046 61.111 1.45 0.00 0.00 4.46
3140 5084 3.244105 CACAAGTTGCTCGTCCGG 58.756 61.111 1.81 0.00 0.00 5.14
3239 5196 7.443879 CCAGTATATGTGTGGTACAATATGCAA 59.556 37.037 0.00 0.00 44.16 4.08
3593 5721 0.247736 CCTCTCCGGTCAACAAGAGG 59.752 60.000 17.54 17.54 46.51 3.69
3600 5728 1.070786 GTCAACAAGAGGGTCCGCA 59.929 57.895 0.00 0.00 0.00 5.69
3740 5868 7.986889 TCTAGTTGCATTTATGTAAGAGCATCA 59.013 33.333 0.00 0.00 37.82 3.07
4122 6251 7.259882 CAGAAAGGCTGCAACATATTAATTCA 58.740 34.615 0.50 0.00 37.90 2.57
4202 6331 5.480772 AGGTACTTCTTGCTAAGCTAGAACA 59.519 40.000 0.00 0.00 43.03 3.18
4450 7132 4.282195 AGTGACGTCTTTTCTCTCAGGATT 59.718 41.667 17.92 0.00 0.00 3.01
4475 7157 5.232463 TCTTGCAAGCTTTTGATGAATTCC 58.768 37.500 21.99 0.00 0.00 3.01
4550 7232 5.849140 ACATTTGGATTTATAAGTGGGGGT 58.151 37.500 0.00 0.00 0.00 4.95
4701 7387 4.693283 TGACAGTCTCAATAATAAGGGCG 58.307 43.478 1.31 0.00 0.00 6.13
4735 7421 3.496331 GGAATTTCCAGGTCAGGAACAA 58.504 45.455 10.67 0.00 46.85 2.83
4944 7637 5.646467 CTGTTTGGAGCATTTGAAAACAG 57.354 39.130 10.99 10.99 46.40 3.16
4970 7663 9.185192 GAGAAACTGTAAAATCTTTGACAATGG 57.815 33.333 1.60 0.00 31.35 3.16
5136 7830 8.392372 TCTTCTGTATGTAGCTGTCGTATATT 57.608 34.615 0.00 0.00 0.00 1.28
5183 7877 6.764560 TCTTAATAAAATTCTACTGTCGGGGC 59.235 38.462 0.00 0.00 0.00 5.80
5209 7903 3.319755 CCTACGCCTACAGTTTTTCGAA 58.680 45.455 0.00 0.00 0.00 3.71
5210 7904 3.367025 CCTACGCCTACAGTTTTTCGAAG 59.633 47.826 0.00 0.00 0.00 3.79
5265 7959 6.482973 ACAATTTTCTACCATGGTTTGCTTTG 59.517 34.615 25.38 20.19 0.00 2.77
5369 8064 2.676463 GCTGTGTCTCACTCCTGGAATC 60.676 54.545 0.00 0.00 35.11 2.52
5402 8097 3.944650 TGCAGACAAGACAAGCTTTTACA 59.055 39.130 0.00 0.00 33.60 2.41
5510 8205 0.911769 ATGATGGGAGGCGTTTCTCA 59.088 50.000 0.00 0.06 35.58 3.27
5566 8264 9.141400 CTTTTACGTAGCTTGAATCTTCTAAGT 57.859 33.333 0.00 0.00 0.00 2.24
5574 8272 7.390027 AGCTTGAATCTTCTAAGTGCTTCTTA 58.610 34.615 0.00 0.00 37.56 2.10
5707 8405 8.608844 AAGTTGAATTAGTTAAGAGGTGTCAG 57.391 34.615 0.00 0.00 0.00 3.51
6203 8927 9.017509 AGTTGTGTTGACATCATGAGAATATTT 57.982 29.630 0.09 0.00 30.13 1.40
6291 9015 4.138487 ACAAGAGGGCTCCGTAAATAAG 57.862 45.455 0.00 0.00 0.00 1.73
6307 9031 7.855904 CCGTAAATAAGAGTTGTTTCATATGGC 59.144 37.037 2.13 0.00 0.00 4.40
6331 9189 6.458888 GCTTTCTTTTGGTCTGGTAGCATATC 60.459 42.308 0.00 0.00 35.03 1.63
6332 9190 5.957771 TCTTTTGGTCTGGTAGCATATCT 57.042 39.130 0.00 0.00 35.03 1.98
6333 9191 7.432148 TTCTTTTGGTCTGGTAGCATATCTA 57.568 36.000 0.00 0.00 35.03 1.98
6334 9192 7.618019 TCTTTTGGTCTGGTAGCATATCTAT 57.382 36.000 0.00 0.00 35.03 1.98
6335 9193 8.034313 TCTTTTGGTCTGGTAGCATATCTATT 57.966 34.615 0.00 0.00 35.03 1.73
6336 9194 7.933577 TCTTTTGGTCTGGTAGCATATCTATTG 59.066 37.037 0.00 0.00 35.03 1.90
6337 9195 5.152623 TGGTCTGGTAGCATATCTATTGC 57.847 43.478 0.00 0.00 40.45 3.56
6338 9196 4.020218 TGGTCTGGTAGCATATCTATTGCC 60.020 45.833 0.00 0.00 41.06 4.52
6339 9197 4.223923 GGTCTGGTAGCATATCTATTGCCT 59.776 45.833 0.00 0.00 41.06 4.75
6340 9198 5.174395 GTCTGGTAGCATATCTATTGCCTG 58.826 45.833 0.00 0.00 41.06 4.85
6341 9199 4.840680 TCTGGTAGCATATCTATTGCCTGT 59.159 41.667 0.00 0.00 41.06 4.00
6342 9200 5.307976 TCTGGTAGCATATCTATTGCCTGTT 59.692 40.000 0.00 0.00 41.06 3.16
6343 9201 5.940617 TGGTAGCATATCTATTGCCTGTTT 58.059 37.500 0.00 0.00 41.06 2.83
6344 9202 6.364701 TGGTAGCATATCTATTGCCTGTTTT 58.635 36.000 0.00 0.00 41.06 2.43
6345 9203 6.262944 TGGTAGCATATCTATTGCCTGTTTTG 59.737 38.462 0.00 0.00 41.06 2.44
6346 9204 5.779529 AGCATATCTATTGCCTGTTTTGG 57.220 39.130 0.00 0.00 41.06 3.28
6347 9205 5.203528 AGCATATCTATTGCCTGTTTTGGT 58.796 37.500 0.00 0.00 41.06 3.67
6348 9206 5.658190 AGCATATCTATTGCCTGTTTTGGTT 59.342 36.000 0.00 0.00 41.06 3.67
6349 9207 6.155049 AGCATATCTATTGCCTGTTTTGGTTT 59.845 34.615 0.00 0.00 41.06 3.27
6350 9208 6.476706 GCATATCTATTGCCTGTTTTGGTTTC 59.523 38.462 0.00 0.00 33.95 2.78
6351 9209 7.546358 CATATCTATTGCCTGTTTTGGTTTCA 58.454 34.615 0.00 0.00 0.00 2.69
6352 9210 6.610075 ATCTATTGCCTGTTTTGGTTTCAT 57.390 33.333 0.00 0.00 0.00 2.57
6353 9211 7.716799 ATCTATTGCCTGTTTTGGTTTCATA 57.283 32.000 0.00 0.00 0.00 2.15
6354 9212 6.919721 TCTATTGCCTGTTTTGGTTTCATAC 58.080 36.000 0.00 0.00 0.00 2.39
6355 9213 3.634568 TGCCTGTTTTGGTTTCATACG 57.365 42.857 0.00 0.00 0.00 3.06
6356 9214 3.215151 TGCCTGTTTTGGTTTCATACGA 58.785 40.909 0.00 0.00 0.00 3.43
6357 9215 3.252215 TGCCTGTTTTGGTTTCATACGAG 59.748 43.478 0.00 0.00 0.00 4.18
6358 9216 3.252458 GCCTGTTTTGGTTTCATACGAGT 59.748 43.478 0.00 0.00 0.00 4.18
6359 9217 4.261447 GCCTGTTTTGGTTTCATACGAGTT 60.261 41.667 0.00 0.00 0.00 3.01
6360 9218 5.735070 GCCTGTTTTGGTTTCATACGAGTTT 60.735 40.000 0.00 0.00 0.00 2.66
6361 9219 6.513720 GCCTGTTTTGGTTTCATACGAGTTTA 60.514 38.462 0.00 0.00 0.00 2.01
6362 9220 7.419204 CCTGTTTTGGTTTCATACGAGTTTAA 58.581 34.615 0.00 0.00 0.00 1.52
6363 9221 8.079809 CCTGTTTTGGTTTCATACGAGTTTAAT 58.920 33.333 0.00 0.00 0.00 1.40
6364 9222 9.113876 CTGTTTTGGTTTCATACGAGTTTAATC 57.886 33.333 0.00 0.00 0.00 1.75
6366 9224 5.459110 TGGTTTCATACGAGTTTAATCGC 57.541 39.130 0.00 0.00 46.60 4.58
6367 9225 4.330620 TGGTTTCATACGAGTTTAATCGCC 59.669 41.667 0.00 0.00 46.60 5.54
6368 9226 4.260497 GGTTTCATACGAGTTTAATCGCCC 60.260 45.833 0.00 0.00 46.60 6.13
6369 9227 4.395959 TTCATACGAGTTTAATCGCCCT 57.604 40.909 0.00 0.00 46.60 5.19
6370 9228 4.395959 TCATACGAGTTTAATCGCCCTT 57.604 40.909 0.00 0.00 46.60 3.95
6371 9229 5.518848 TCATACGAGTTTAATCGCCCTTA 57.481 39.130 0.00 0.00 46.60 2.69
6372 9230 5.904941 TCATACGAGTTTAATCGCCCTTAA 58.095 37.500 0.00 0.00 46.60 1.85
6373 9231 6.339730 TCATACGAGTTTAATCGCCCTTAAA 58.660 36.000 0.00 0.00 46.60 1.52
6374 9232 6.987992 TCATACGAGTTTAATCGCCCTTAAAT 59.012 34.615 0.00 0.00 46.60 1.40
6375 9233 7.496591 TCATACGAGTTTAATCGCCCTTAAATT 59.503 33.333 0.00 0.00 46.60 1.82
6376 9234 6.505044 ACGAGTTTAATCGCCCTTAAATTT 57.495 33.333 0.00 0.00 46.60 1.82
6377 9235 6.916440 ACGAGTTTAATCGCCCTTAAATTTT 58.084 32.000 0.00 0.00 46.60 1.82
6378 9236 6.804783 ACGAGTTTAATCGCCCTTAAATTTTG 59.195 34.615 0.00 0.00 46.60 2.44
6379 9237 6.804783 CGAGTTTAATCGCCCTTAAATTTTGT 59.195 34.615 0.00 0.00 35.66 2.83
6380 9238 7.327518 CGAGTTTAATCGCCCTTAAATTTTGTT 59.672 33.333 0.00 0.00 35.66 2.83
6381 9239 9.628746 GAGTTTAATCGCCCTTAAATTTTGTTA 57.371 29.630 0.00 0.00 34.19 2.41
6382 9240 9.984190 AGTTTAATCGCCCTTAAATTTTGTTAA 57.016 25.926 0.00 0.00 34.19 2.01
6389 9247 9.360093 TCGCCCTTAAATTTTGTTAAATATGTG 57.640 29.630 0.00 0.00 32.85 3.21
6390 9248 8.599774 CGCCCTTAAATTTTGTTAAATATGTGG 58.400 33.333 0.00 0.00 32.85 4.17
6391 9249 9.443323 GCCCTTAAATTTTGTTAAATATGTGGT 57.557 29.630 0.00 0.00 32.85 4.16
6399 9257 8.994429 TTTTGTTAAATATGTGGTGCCTATTG 57.006 30.769 0.00 0.00 0.00 1.90
6400 9258 7.946381 TTGTTAAATATGTGGTGCCTATTGA 57.054 32.000 0.00 0.00 0.00 2.57
6401 9259 7.946381 TGTTAAATATGTGGTGCCTATTGAA 57.054 32.000 0.00 0.00 0.00 2.69
6402 9260 7.995289 TGTTAAATATGTGGTGCCTATTGAAG 58.005 34.615 0.00 0.00 0.00 3.02
6403 9261 7.613801 TGTTAAATATGTGGTGCCTATTGAAGT 59.386 33.333 0.00 0.00 0.00 3.01
6404 9262 9.116067 GTTAAATATGTGGTGCCTATTGAAGTA 57.884 33.333 0.00 0.00 0.00 2.24
6405 9263 9.860650 TTAAATATGTGGTGCCTATTGAAGTAT 57.139 29.630 0.00 0.00 0.00 2.12
6406 9264 8.766994 AAATATGTGGTGCCTATTGAAGTATT 57.233 30.769 0.00 0.00 0.00 1.89
6407 9265 9.860650 AAATATGTGGTGCCTATTGAAGTATTA 57.139 29.630 0.00 0.00 0.00 0.98
6408 9266 9.860650 AATATGTGGTGCCTATTGAAGTATTAA 57.139 29.630 0.00 0.00 0.00 1.40
6409 9267 9.860650 ATATGTGGTGCCTATTGAAGTATTAAA 57.139 29.630 0.00 0.00 0.00 1.52
6410 9268 7.624360 TGTGGTGCCTATTGAAGTATTAAAG 57.376 36.000 0.00 0.00 0.00 1.85
6411 9269 6.094881 TGTGGTGCCTATTGAAGTATTAAAGC 59.905 38.462 0.00 0.00 0.00 3.51
6412 9270 6.094881 GTGGTGCCTATTGAAGTATTAAAGCA 59.905 38.462 0.00 0.00 0.00 3.91
6413 9271 6.833416 TGGTGCCTATTGAAGTATTAAAGCAT 59.167 34.615 0.00 0.00 0.00 3.79
6414 9272 7.141363 GGTGCCTATTGAAGTATTAAAGCATG 58.859 38.462 0.00 0.00 0.00 4.06
6415 9273 7.013274 GGTGCCTATTGAAGTATTAAAGCATGA 59.987 37.037 0.00 0.00 0.00 3.07
6416 9274 8.072567 GTGCCTATTGAAGTATTAAAGCATGAG 58.927 37.037 0.00 0.00 0.00 2.90
6417 9275 7.775093 TGCCTATTGAAGTATTAAAGCATGAGT 59.225 33.333 0.00 0.00 0.00 3.41
6418 9276 8.072567 GCCTATTGAAGTATTAAAGCATGAGTG 58.927 37.037 0.00 0.00 0.00 3.51
6419 9277 9.113838 CCTATTGAAGTATTAAAGCATGAGTGT 57.886 33.333 0.00 0.00 0.00 3.55
6420 9278 9.926751 CTATTGAAGTATTAAAGCATGAGTGTG 57.073 33.333 0.00 0.00 0.00 3.82
6421 9279 7.977789 TTGAAGTATTAAAGCATGAGTGTGA 57.022 32.000 0.00 0.00 0.00 3.58
6422 9280 7.601073 TGAAGTATTAAAGCATGAGTGTGAG 57.399 36.000 0.00 0.00 0.00 3.51
6423 9281 6.092670 TGAAGTATTAAAGCATGAGTGTGAGC 59.907 38.462 0.00 0.00 0.00 4.26
6424 9282 5.491070 AGTATTAAAGCATGAGTGTGAGCA 58.509 37.500 0.00 0.00 0.00 4.26
6425 9283 5.939883 AGTATTAAAGCATGAGTGTGAGCAA 59.060 36.000 0.00 0.00 0.00 3.91
6426 9284 5.710513 ATTAAAGCATGAGTGTGAGCAAA 57.289 34.783 0.00 0.00 0.00 3.68
6427 9285 3.637998 AAAGCATGAGTGTGAGCAAAG 57.362 42.857 0.00 0.00 0.00 2.77
6428 9286 0.879765 AGCATGAGTGTGAGCAAAGC 59.120 50.000 0.00 0.00 0.00 3.51
6429 9287 0.879765 GCATGAGTGTGAGCAAAGCT 59.120 50.000 0.00 0.00 43.88 3.74
6430 9288 2.079158 GCATGAGTGTGAGCAAAGCTA 58.921 47.619 0.00 0.00 39.88 3.32
6431 9289 2.485426 GCATGAGTGTGAGCAAAGCTAA 59.515 45.455 0.00 0.00 39.88 3.09
6432 9290 3.058016 GCATGAGTGTGAGCAAAGCTAAA 60.058 43.478 0.00 0.00 39.88 1.85
6433 9291 4.380233 GCATGAGTGTGAGCAAAGCTAAAT 60.380 41.667 0.00 0.00 39.88 1.40
6434 9292 5.706916 CATGAGTGTGAGCAAAGCTAAATT 58.293 37.500 0.00 0.00 39.88 1.82
6435 9293 5.772825 TGAGTGTGAGCAAAGCTAAATTT 57.227 34.783 0.00 0.00 39.88 1.82
6436 9294 6.147864 TGAGTGTGAGCAAAGCTAAATTTT 57.852 33.333 0.00 0.00 39.88 1.82
6437 9295 7.270757 TGAGTGTGAGCAAAGCTAAATTTTA 57.729 32.000 0.00 0.00 39.88 1.52
6438 9296 7.711846 TGAGTGTGAGCAAAGCTAAATTTTAA 58.288 30.769 0.00 0.00 39.88 1.52
6439 9297 8.359642 TGAGTGTGAGCAAAGCTAAATTTTAAT 58.640 29.630 0.00 0.00 39.88 1.40
6440 9298 9.196552 GAGTGTGAGCAAAGCTAAATTTTAATT 57.803 29.630 0.00 0.00 39.88 1.40
6441 9299 9.546428 AGTGTGAGCAAAGCTAAATTTTAATTT 57.454 25.926 0.00 5.82 39.88 1.82
6460 9318 9.462174 TTTAATTTTAGAGTGCATGTGTTTCTG 57.538 29.630 0.00 0.00 0.00 3.02
6461 9319 6.639632 ATTTTAGAGTGCATGTGTTTCTGT 57.360 33.333 0.00 0.00 0.00 3.41
6462 9320 7.744087 ATTTTAGAGTGCATGTGTTTCTGTA 57.256 32.000 0.00 0.00 0.00 2.74
6463 9321 6.539649 TTTAGAGTGCATGTGTTTCTGTAC 57.460 37.500 0.00 0.00 0.00 2.90
6464 9322 4.071961 AGAGTGCATGTGTTTCTGTACA 57.928 40.909 0.00 0.00 31.34 2.90
6465 9323 4.645535 AGAGTGCATGTGTTTCTGTACAT 58.354 39.130 0.00 0.00 37.99 2.29
6466 9324 5.793817 AGAGTGCATGTGTTTCTGTACATA 58.206 37.500 0.00 0.00 35.86 2.29
6467 9325 6.409704 AGAGTGCATGTGTTTCTGTACATAT 58.590 36.000 0.00 0.00 35.86 1.78
6468 9326 6.314648 AGAGTGCATGTGTTTCTGTACATATG 59.685 38.462 0.00 0.00 45.18 1.78
6469 9327 5.939883 AGTGCATGTGTTTCTGTACATATGT 59.060 36.000 13.93 13.93 44.60 2.29
6470 9328 6.430925 AGTGCATGTGTTTCTGTACATATGTT 59.569 34.615 14.77 0.00 44.60 2.71
6471 9329 7.040478 AGTGCATGTGTTTCTGTACATATGTTT 60.040 33.333 14.77 0.00 44.60 2.83
6472 9330 7.271223 GTGCATGTGTTTCTGTACATATGTTTC 59.729 37.037 14.77 8.55 44.60 2.78
6473 9331 7.174772 TGCATGTGTTTCTGTACATATGTTTCT 59.825 33.333 14.77 0.00 44.60 2.52
6474 9332 8.023128 GCATGTGTTTCTGTACATATGTTTCTT 58.977 33.333 14.77 0.00 44.60 2.52
6475 9333 9.897744 CATGTGTTTCTGTACATATGTTTCTTT 57.102 29.630 14.77 0.00 40.59 2.52
6540 9398 9.406828 ACTACACATATGTTATACATTGCGTAG 57.593 33.333 5.37 12.22 39.88 3.51
6708 9566 1.646912 TCCGTGGGATTGAGTTACCA 58.353 50.000 0.00 0.00 0.00 3.25
6718 9576 5.357257 GGATTGAGTTACCACGTGATATGT 58.643 41.667 19.30 8.86 0.00 2.29
6804 9662 2.005266 AGCAGCCCAGATCCATGGT 61.005 57.895 12.58 0.00 38.81 3.55
6894 9752 0.252479 ATCTGCCTGAGCTGTTCCAG 59.748 55.000 0.00 0.00 40.80 3.86
6919 9777 5.295431 TCTTAAATCTTGATTGTGCCGTG 57.705 39.130 0.00 0.00 0.00 4.94
6992 9850 2.669434 GCAATTTTATGTGTGCCTGCAG 59.331 45.455 6.78 6.78 0.00 4.41
7046 9904 1.277273 TGATCTGAGAGCCCTGTTGTG 59.723 52.381 0.00 0.00 0.00 3.33
7111 9970 6.932356 TGATCATAATCCTCTCAAAACTGC 57.068 37.500 0.00 0.00 0.00 4.40
7142 10001 1.576368 ATGCCCCATGGAACGGGTTA 61.576 55.000 15.22 0.00 42.77 2.85
7181 10040 3.635510 GGCTGCTAGTGGTAGGCT 58.364 61.111 10.67 0.00 46.50 4.58
7189 10048 2.501223 TAGTGGTAGGCTGTGCGTGC 62.501 60.000 0.00 0.00 0.00 5.34
7222 10081 5.361571 ACCGGAATGAGTGTATGTATGTGTA 59.638 40.000 9.46 0.00 0.00 2.90
7223 10082 6.041637 ACCGGAATGAGTGTATGTATGTGTAT 59.958 38.462 9.46 0.00 0.00 2.29
7224 10083 6.366061 CCGGAATGAGTGTATGTATGTGTATG 59.634 42.308 0.00 0.00 0.00 2.39
7225 10084 6.923508 CGGAATGAGTGTATGTATGTGTATGT 59.076 38.462 0.00 0.00 0.00 2.29
7226 10085 7.096065 CGGAATGAGTGTATGTATGTGTATGTG 60.096 40.741 0.00 0.00 0.00 3.21
7312 10174 1.528129 CCAGGTGAGAAAGTGGAAGC 58.472 55.000 0.00 0.00 31.04 3.86
7313 10175 1.202806 CCAGGTGAGAAAGTGGAAGCA 60.203 52.381 0.00 0.00 31.04 3.91
7314 10176 2.575532 CAGGTGAGAAAGTGGAAGCAA 58.424 47.619 0.00 0.00 0.00 3.91
7315 10177 2.291741 CAGGTGAGAAAGTGGAAGCAAC 59.708 50.000 0.00 0.00 0.00 4.17
7317 10179 2.297701 GTGAGAAAGTGGAAGCAACCA 58.702 47.619 0.00 0.00 37.63 3.67
7319 10181 3.319122 GTGAGAAAGTGGAAGCAACCAAT 59.681 43.478 3.52 0.04 41.87 3.16
7320 10182 3.569701 TGAGAAAGTGGAAGCAACCAATC 59.430 43.478 3.52 3.89 41.87 2.67
7321 10183 2.554032 AGAAAGTGGAAGCAACCAATCG 59.446 45.455 3.52 0.00 41.87 3.34
7381 11429 8.442632 TGTATTCAACAAATTTGATGGCAAAA 57.557 26.923 24.64 12.77 40.23 2.44
7396 11444 1.846007 CAAAAATGTCCCCGATCCCA 58.154 50.000 0.00 0.00 0.00 4.37
7433 11481 1.931841 CTCCGAGCACATCAACATCAG 59.068 52.381 0.00 0.00 0.00 2.90
7439 11487 1.671979 CACATCAACATCAGCCCGAT 58.328 50.000 0.00 0.00 33.27 4.18
7467 11515 9.217278 GTATCATTCTCATACATTCAAGCTGAT 57.783 33.333 0.00 0.00 0.00 2.90
7490 11553 3.304592 GCATGAAAACAAACCCAAATGGC 60.305 43.478 0.00 0.00 37.83 4.40
7528 11591 2.554806 TATAATCATAGGGCGACGCG 57.445 50.000 14.61 3.53 0.00 6.01
7556 11621 1.651240 CCCAGCTCGCCAAACATCAG 61.651 60.000 0.00 0.00 0.00 2.90
7687 11752 4.267341 ACCTCCCTAGCTGTGTAACTAT 57.733 45.455 0.00 0.00 38.04 2.12
7833 11898 4.284860 TCGTGTCGCTGCAGCACT 62.285 61.111 36.03 0.00 42.21 4.40
7869 11934 5.503031 GCAAAATCTCATCACATGTAGACCG 60.503 44.000 0.00 0.00 0.00 4.79
7913 11978 3.323979 ACCCTTTCGGATATATCGCAACT 59.676 43.478 6.64 0.00 34.64 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.229792 ACTGGTTAGTGCATGGTTGTG 58.770 47.619 0.00 0.00 35.34 3.33
1 2 2.656947 ACTGGTTAGTGCATGGTTGT 57.343 45.000 0.00 0.00 35.34 3.32
2 3 3.149196 AGAACTGGTTAGTGCATGGTTG 58.851 45.455 0.00 0.00 37.19 3.77
3 4 3.181445 TGAGAACTGGTTAGTGCATGGTT 60.181 43.478 0.00 0.00 37.19 3.67
4 5 2.371841 TGAGAACTGGTTAGTGCATGGT 59.628 45.455 0.00 0.00 37.19 3.55
5 6 3.057969 TGAGAACTGGTTAGTGCATGG 57.942 47.619 0.00 0.00 37.19 3.66
6 7 5.437289 TTTTGAGAACTGGTTAGTGCATG 57.563 39.130 0.00 0.00 37.19 4.06
32 33 3.305335 GGAGTTGATCGGTGCATGTTTTT 60.305 43.478 0.00 0.00 0.00 1.94
33 34 2.228822 GGAGTTGATCGGTGCATGTTTT 59.771 45.455 0.00 0.00 0.00 2.43
34 35 1.812571 GGAGTTGATCGGTGCATGTTT 59.187 47.619 0.00 0.00 0.00 2.83
35 36 1.271325 TGGAGTTGATCGGTGCATGTT 60.271 47.619 0.00 0.00 0.00 2.71
36 37 0.324614 TGGAGTTGATCGGTGCATGT 59.675 50.000 0.00 0.00 0.00 3.21
98 99 2.286536 GCGGTGCTTTCTTCGTTTGTAA 60.287 45.455 0.00 0.00 0.00 2.41
113 114 5.061684 GGTTATAATTTTGTTCTTGCGGTGC 59.938 40.000 0.00 0.00 0.00 5.01
194 196 9.624697 GTGTCAAAAACATCTGATATTAAGCAA 57.375 29.630 0.00 0.00 40.80 3.91
196 198 7.429340 CGGTGTCAAAAACATCTGATATTAAGC 59.571 37.037 0.00 0.00 40.80 3.09
252 258 8.644374 AGATGGAGATGTACTTCCTCTATAAC 57.356 38.462 5.19 0.00 29.34 1.89
297 303 4.822350 TGAAACATGAAACCGTACATTCCA 59.178 37.500 0.00 0.00 0.00 3.53
298 304 5.365403 TGAAACATGAAACCGTACATTCC 57.635 39.130 0.00 0.00 0.00 3.01
340 348 8.893563 AATTATTATGTGAGGAAGGTTGGAAA 57.106 30.769 0.00 0.00 0.00 3.13
341 349 9.983024 TTAATTATTATGTGAGGAAGGTTGGAA 57.017 29.630 0.00 0.00 0.00 3.53
390 400 9.650371 GCAAAAGAGAAATGTTAAAATTGGTTC 57.350 29.630 0.00 0.00 0.00 3.62
393 403 8.069574 GTGGCAAAAGAGAAATGTTAAAATTGG 58.930 33.333 0.00 0.00 0.00 3.16
395 405 8.962884 AGTGGCAAAAGAGAAATGTTAAAATT 57.037 26.923 0.00 0.00 0.00 1.82
401 1539 5.859205 AAGAGTGGCAAAAGAGAAATGTT 57.141 34.783 0.00 0.00 0.00 2.71
430 1568 7.830940 TGAAATGGCAATTGTGATAATTGTC 57.169 32.000 11.59 11.59 41.29 3.18
431 1569 8.203937 CATGAAATGGCAATTGTGATAATTGT 57.796 30.769 14.64 0.00 41.79 2.71
472 1610 9.571816 TTGACAATATATCATAATTGCCACTGA 57.428 29.630 0.00 0.00 36.72 3.41
477 1618 9.918630 AGCTTTTGACAATATATCATAATTGCC 57.081 29.630 0.00 0.00 36.72 4.52
490 1631 5.181245 GTGCCACTCTTAGCTTTTGACAATA 59.819 40.000 0.00 0.00 0.00 1.90
597 1757 7.681939 TTCTTACGCCACTTTAGATTTTGAT 57.318 32.000 0.00 0.00 0.00 2.57
608 1768 5.508200 TGTCAATTTTTCTTACGCCACTT 57.492 34.783 0.00 0.00 0.00 3.16
615 1775 7.650104 TCACCGGATTTTGTCAATTTTTCTTAC 59.350 33.333 9.46 0.00 0.00 2.34
620 1780 6.204495 CCATTCACCGGATTTTGTCAATTTTT 59.796 34.615 9.46 0.00 0.00 1.94
635 1795 0.538516 TTTGTCCACCCATTCACCGG 60.539 55.000 0.00 0.00 0.00 5.28
636 1796 1.000717 GTTTTGTCCACCCATTCACCG 60.001 52.381 0.00 0.00 0.00 4.94
637 1797 1.343142 GGTTTTGTCCACCCATTCACC 59.657 52.381 0.00 0.00 0.00 4.02
639 1799 2.461300 TGGTTTTGTCCACCCATTCA 57.539 45.000 0.00 0.00 32.71 2.57
641 1801 4.445592 GGATTTTGGTTTTGTCCACCCATT 60.446 41.667 0.00 0.00 37.20 3.16
642 1802 3.072330 GGATTTTGGTTTTGTCCACCCAT 59.928 43.478 0.00 0.00 37.20 4.00
643 1803 2.436173 GGATTTTGGTTTTGTCCACCCA 59.564 45.455 0.00 0.00 37.20 4.51
644 1804 2.547007 CGGATTTTGGTTTTGTCCACCC 60.547 50.000 0.00 0.00 37.20 4.61
645 1805 2.101750 ACGGATTTTGGTTTTGTCCACC 59.898 45.455 0.00 0.00 37.20 4.61
646 1806 3.377439 GACGGATTTTGGTTTTGTCCAC 58.623 45.455 0.00 0.00 37.20 4.02
647 1807 2.033550 CGACGGATTTTGGTTTTGTCCA 59.966 45.455 0.00 0.00 35.49 4.02
648 1808 2.033675 ACGACGGATTTTGGTTTTGTCC 59.966 45.455 0.00 0.00 0.00 4.02
649 1809 3.040099 CACGACGGATTTTGGTTTTGTC 58.960 45.455 0.00 0.00 0.00 3.18
650 1810 2.424246 ACACGACGGATTTTGGTTTTGT 59.576 40.909 0.00 0.00 0.00 2.83
651 1811 3.073144 ACACGACGGATTTTGGTTTTG 57.927 42.857 0.00 0.00 0.00 2.44
656 1816 3.552604 ATCAAACACGACGGATTTTGG 57.447 42.857 14.33 0.09 31.20 3.28
657 1817 7.561237 AAAATATCAAACACGACGGATTTTG 57.439 32.000 0.00 5.83 0.00 2.44
703 1887 4.202223 CCATCCAACCGTAGCAGTATAACT 60.202 45.833 0.00 0.00 0.00 2.24
740 1932 4.321230 GGTGGAGACCAATTTGTTGACATC 60.321 45.833 0.00 0.00 42.59 3.06
771 1964 4.681978 GGCACCGCTTGTCCGTCT 62.682 66.667 0.00 0.00 0.00 4.18
787 1980 3.986996 TCTCCTAAAACCTAAACCGGG 57.013 47.619 6.32 0.00 0.00 5.73
810 2003 6.342111 GTTGTTTTTCATTTGTGGGTTAGGA 58.658 36.000 0.00 0.00 0.00 2.94
821 2014 4.932200 TCTTTGCCACGTTGTTTTTCATTT 59.068 33.333 0.00 0.00 0.00 2.32
844 2037 3.492102 TTGAACTAGAGCCAAAGCACT 57.508 42.857 0.00 0.00 42.95 4.40
849 2042 6.272318 CACATTGTTTTGAACTAGAGCCAAA 58.728 36.000 0.00 0.92 0.00 3.28
852 2045 4.798574 CCACATTGTTTTGAACTAGAGCC 58.201 43.478 0.00 0.00 0.00 4.70
867 2060 2.559668 ACTGAATTCCACAGCCACATTG 59.440 45.455 2.27 0.00 38.74 2.82
868 2061 2.880443 ACTGAATTCCACAGCCACATT 58.120 42.857 2.27 0.00 38.74 2.71
869 2062 2.592102 ACTGAATTCCACAGCCACAT 57.408 45.000 2.27 0.00 38.74 3.21
870 2063 2.158623 AGAACTGAATTCCACAGCCACA 60.159 45.455 2.27 0.00 38.16 4.17
871 2064 2.227388 CAGAACTGAATTCCACAGCCAC 59.773 50.000 2.27 0.00 38.16 5.01
884 2775 1.416401 GGCCCCGATATTCAGAACTGA 59.584 52.381 0.00 0.00 37.91 3.41
887 2778 1.594331 GTGGCCCCGATATTCAGAAC 58.406 55.000 0.00 0.00 0.00 3.01
889 2780 0.692756 TGGTGGCCCCGATATTCAGA 60.693 55.000 0.00 0.00 35.15 3.27
895 2786 0.694783 TGGTATTGGTGGCCCCGATA 60.695 55.000 13.54 13.54 38.40 2.92
901 2792 0.532115 CAGCTTTGGTATTGGTGGCC 59.468 55.000 0.00 0.00 0.00 5.36
914 2805 4.392138 GCAAGGTAGTTTCGATACAGCTTT 59.608 41.667 8.74 1.04 0.00 3.51
919 2810 2.264813 GCGCAAGGTAGTTTCGATACA 58.735 47.619 0.30 0.00 38.28 2.29
988 2886 1.782044 CCAATTGCACAAAACCGAGG 58.218 50.000 0.00 0.00 0.00 4.63
1114 3028 1.022451 GCGGGATGTTGGAAAGCGTA 61.022 55.000 0.00 0.00 0.00 4.42
1118 3032 2.485122 GCGCGGGATGTTGGAAAG 59.515 61.111 8.83 0.00 0.00 2.62
1119 3033 3.059386 GGCGCGGGATGTTGGAAA 61.059 61.111 8.83 0.00 0.00 3.13
1284 3198 1.612395 GCTCAGGAGGAGGTCACAGG 61.612 65.000 0.00 0.00 44.22 4.00
1309 3223 1.696097 CGACGGGGAAAGGGATGGAT 61.696 60.000 0.00 0.00 0.00 3.41
1334 3248 4.019321 CCAATGGAGAAGGTTGTAAGAGGA 60.019 45.833 0.00 0.00 0.00 3.71
1402 3317 4.819105 TCGGATAGAACAACAGGACAAT 57.181 40.909 0.00 0.00 0.00 2.71
1511 3426 1.925185 GACGGCGGTAGATTCTTTGTC 59.075 52.381 13.24 0.00 0.00 3.18
1521 3436 1.924524 CATACAACAAGACGGCGGTAG 59.075 52.381 13.24 0.00 0.00 3.18
1528 3443 1.468127 TGCATGGCATACAACAAGACG 59.532 47.619 0.00 0.00 31.71 4.18
1558 3473 3.961477 TGCAAGATGTTGTGTACACAC 57.039 42.857 27.91 21.30 46.59 3.82
1559 3474 3.243035 GCTTGCAAGATGTTGTGTACACA 60.243 43.478 30.39 24.62 40.19 3.72
1560 3475 3.243035 TGCTTGCAAGATGTTGTGTACAC 60.243 43.478 30.39 19.36 40.19 2.90
1561 3476 2.948315 TGCTTGCAAGATGTTGTGTACA 59.052 40.909 30.39 11.02 41.97 2.90
1562 3477 3.250762 TCTGCTTGCAAGATGTTGTGTAC 59.749 43.478 30.39 8.44 35.92 2.90
1563 3478 3.475575 TCTGCTTGCAAGATGTTGTGTA 58.524 40.909 30.39 0.00 35.92 2.90
1564 3479 2.300433 TCTGCTTGCAAGATGTTGTGT 58.700 42.857 30.39 0.00 35.92 3.72
1565 3480 3.570926 ATCTGCTTGCAAGATGTTGTG 57.429 42.857 30.39 10.31 35.92 3.33
1566 3481 4.330250 ACTATCTGCTTGCAAGATGTTGT 58.670 39.130 30.39 16.22 35.92 3.32
1576 3492 4.375272 TGATTCTGCTACTATCTGCTTGC 58.625 43.478 0.00 0.00 0.00 4.01
1605 3521 6.500684 TGCAAGAAACCATCTCTAATTGAC 57.499 37.500 0.00 0.00 37.42 3.18
1648 3564 3.008375 ACACAATTCTTCTCCTGCTGCTA 59.992 43.478 0.00 0.00 0.00 3.49
1651 3567 3.817084 TCAACACAATTCTTCTCCTGCTG 59.183 43.478 0.00 0.00 0.00 4.41
1684 3600 3.914364 GCGCAAGAACACCTAATTCAAAG 59.086 43.478 0.30 0.00 43.02 2.77
1694 3610 3.966215 TGCTAGCGCAAGAACACC 58.034 55.556 11.47 0.00 44.62 4.16
1720 3636 1.295020 TATCCCCTCCCCTTTGTGTG 58.705 55.000 0.00 0.00 0.00 3.82
1924 3840 6.547510 ACAAGAACATAGCAACCTTTTCTTCT 59.452 34.615 0.00 0.00 32.32 2.85
1975 3891 0.684153 AAGTGCCACACAGCAACCTT 60.684 50.000 0.00 0.00 46.19 3.50
2086 4005 9.820725 ATAATTCAAATGTCAAGAGAGAGAGAG 57.179 33.333 0.00 0.00 0.00 3.20
2293 4213 1.070445 CACTCCAAAAATGGGCTTGCA 59.930 47.619 0.00 0.00 0.00 4.08
2353 4273 0.908198 AGAGGATGAAGACCACAGCC 59.092 55.000 0.00 0.00 43.13 4.85
2373 4293 2.660064 GCTCTTTGCTCGGGAGGGA 61.660 63.158 0.00 0.00 38.95 4.20
2561 4485 4.208686 CACGGCGGGAGGAGCTAC 62.209 72.222 13.24 0.00 34.52 3.58
2586 4510 4.783621 TCGCTCCATGGTGGCTGC 62.784 66.667 22.60 14.75 37.47 5.25
2592 4516 1.779061 AAGGTTGGTCGCTCCATGGT 61.779 55.000 12.58 0.00 46.60 3.55
2595 4519 1.675641 GCAAGGTTGGTCGCTCCAT 60.676 57.895 0.37 0.00 46.60 3.41
2596 4520 2.281484 GCAAGGTTGGTCGCTCCA 60.281 61.111 0.00 0.00 45.60 3.86
2715 4640 0.537371 CTTGTGGAGGGGTCACCAAC 60.537 60.000 0.00 0.00 43.89 3.77
2753 4678 2.803492 CGGGAGAAATAGAAGCGAAGGG 60.803 54.545 0.00 0.00 0.00 3.95
2784 4709 4.156622 CATCGCTGCTGCCACACG 62.157 66.667 10.24 0.00 35.36 4.49
2803 4728 1.529244 GTGTGCTCCAGCCAAACCT 60.529 57.895 0.00 0.00 41.18 3.50
2843 4768 3.092403 CCATGCACGATCACACCG 58.908 61.111 0.00 0.00 0.00 4.94
2900 4825 2.557924 CACAAATCTTGCTAGGGTTGCA 59.442 45.455 10.13 0.00 38.80 4.08
2901 4826 2.672195 GCACAAATCTTGCTAGGGTTGC 60.672 50.000 10.13 3.29 37.00 4.17
2938 4863 3.313524 TCCGCTCCAGCTGCTTCA 61.314 61.111 8.66 0.00 39.32 3.02
2992 4934 4.514577 CATCCGCCGGCTCGACTT 62.515 66.667 26.68 2.63 0.00 3.01
3154 5099 5.780793 CCTAACATGGTATTAGAGCCCTAGT 59.219 44.000 0.00 0.00 32.31 2.57
3455 5579 0.535102 CAGTCGCACCTTCCCTGTTT 60.535 55.000 0.00 0.00 0.00 2.83
3521 5645 2.556840 TAGCATTGACCCAGCCAGGC 62.557 60.000 1.84 1.84 35.39 4.85
3600 5728 1.299541 CAACAGAAGTCACGCCAGTT 58.700 50.000 0.00 0.00 0.00 3.16
3610 5738 0.534877 TGGTGATGCGCAACAGAAGT 60.535 50.000 21.54 0.00 39.87 3.01
3740 5868 4.532834 TGAGTTGGTAAAGGCAAACTCTT 58.467 39.130 13.69 0.00 45.23 2.85
4202 6331 9.762381 TTTACATTAGAGTGGGGAACAAATAAT 57.238 29.630 0.00 0.00 0.00 1.28
4218 6347 8.303876 GGAAGAAATTTGCCAGTTTACATTAGA 58.696 33.333 0.00 0.00 0.00 2.10
4450 7132 5.717078 ATTCATCAAAAGCTTGCAAGAGA 57.283 34.783 30.39 17.33 32.14 3.10
4475 7157 7.222161 TGGAGAATCATCTACCTGAATTCATG 58.778 38.462 8.96 8.96 35.43 3.07
4550 7232 4.074970 GTTTTGGAGGCAGAGAAAGATGA 58.925 43.478 0.00 0.00 0.00 2.92
4701 7387 2.095718 GGAAATTCCGTCTCTGCAACAC 60.096 50.000 0.00 0.00 0.00 3.32
4735 7421 4.503910 TCGCAGAGCACATAGTTAACAAT 58.496 39.130 8.61 0.00 0.00 2.71
4944 7637 9.185192 CCATTGTCAAAGATTTTACAGTTTCTC 57.815 33.333 0.00 0.00 0.00 2.87
4970 7663 1.392510 CAAAGCGCCTAAACTACGGTC 59.607 52.381 2.29 0.00 36.37 4.79
5104 7798 5.129634 CAGCTACATACAGAAGAGAGAGGA 58.870 45.833 0.00 0.00 0.00 3.71
5183 7877 1.192428 AACTGTAGGCGTAGGGAAGG 58.808 55.000 0.00 0.00 0.00 3.46
5265 7959 4.610945 AGCCAAAGAATATTAATGCGCAC 58.389 39.130 14.90 0.00 0.00 5.34
5369 8064 6.647212 TGTCTTGTCTGCAGTAAAATATCG 57.353 37.500 14.67 0.00 0.00 2.92
5402 8097 3.816994 TGCATCATTTATCTGCTCTGCT 58.183 40.909 0.00 0.00 36.84 4.24
5696 8394 5.048846 ACCAAATAACACTGACACCTCTT 57.951 39.130 0.00 0.00 0.00 2.85
5698 8396 4.578928 ACAACCAAATAACACTGACACCTC 59.421 41.667 0.00 0.00 0.00 3.85
5707 8405 6.035542 CACAAGTTCCAACAACCAAATAACAC 59.964 38.462 0.00 0.00 0.00 3.32
6124 8837 2.629137 ACAGCATTTCAACAAGGCATGA 59.371 40.909 0.00 0.00 0.00 3.07
6128 8841 2.035066 ACTGACAGCATTTCAACAAGGC 59.965 45.455 1.25 0.00 0.00 4.35
6291 9015 7.116805 CCAAAAGAAAGCCATATGAAACAACTC 59.883 37.037 3.65 0.00 0.00 3.01
6307 9031 6.825721 AGATATGCTACCAGACCAAAAGAAAG 59.174 38.462 0.00 0.00 0.00 2.62
6331 9189 5.799936 CGTATGAAACCAAAACAGGCAATAG 59.200 40.000 0.00 0.00 0.00 1.73
6332 9190 5.473846 TCGTATGAAACCAAAACAGGCAATA 59.526 36.000 0.00 0.00 0.00 1.90
6333 9191 4.279671 TCGTATGAAACCAAAACAGGCAAT 59.720 37.500 0.00 0.00 0.00 3.56
6334 9192 3.632604 TCGTATGAAACCAAAACAGGCAA 59.367 39.130 0.00 0.00 0.00 4.52
6335 9193 3.215151 TCGTATGAAACCAAAACAGGCA 58.785 40.909 0.00 0.00 0.00 4.75
6336 9194 3.252458 ACTCGTATGAAACCAAAACAGGC 59.748 43.478 0.00 0.00 0.00 4.85
6337 9195 5.432885 AACTCGTATGAAACCAAAACAGG 57.567 39.130 0.00 0.00 0.00 4.00
6338 9196 9.113876 GATTAAACTCGTATGAAACCAAAACAG 57.886 33.333 0.00 0.00 0.00 3.16
6339 9197 7.799447 CGATTAAACTCGTATGAAACCAAAACA 59.201 33.333 0.00 0.00 34.00 2.83
6340 9198 7.201207 GCGATTAAACTCGTATGAAACCAAAAC 60.201 37.037 0.86 0.00 40.73 2.43
6341 9199 6.797995 GCGATTAAACTCGTATGAAACCAAAA 59.202 34.615 0.86 0.00 40.73 2.44
6342 9200 6.308675 GCGATTAAACTCGTATGAAACCAAA 58.691 36.000 0.86 0.00 40.73 3.28
6343 9201 5.163834 GGCGATTAAACTCGTATGAAACCAA 60.164 40.000 0.86 0.00 40.73 3.67
6344 9202 4.330620 GGCGATTAAACTCGTATGAAACCA 59.669 41.667 0.86 0.00 40.73 3.67
6345 9203 4.260497 GGGCGATTAAACTCGTATGAAACC 60.260 45.833 0.86 0.00 40.73 3.27
6346 9204 4.569564 AGGGCGATTAAACTCGTATGAAAC 59.430 41.667 0.86 0.00 40.73 2.78
6347 9205 4.761975 AGGGCGATTAAACTCGTATGAAA 58.238 39.130 0.86 0.00 40.73 2.69
6348 9206 4.395959 AGGGCGATTAAACTCGTATGAA 57.604 40.909 0.86 0.00 40.73 2.57
6349 9207 4.395959 AAGGGCGATTAAACTCGTATGA 57.604 40.909 0.86 0.00 40.73 2.15
6350 9208 6.592798 TTTAAGGGCGATTAAACTCGTATG 57.407 37.500 0.86 0.00 40.73 2.39
6351 9209 7.797038 AATTTAAGGGCGATTAAACTCGTAT 57.203 32.000 8.01 0.00 40.73 3.06
6352 9210 7.614124 AAATTTAAGGGCGATTAAACTCGTA 57.386 32.000 8.01 0.00 40.73 3.43
6353 9211 6.505044 AAATTTAAGGGCGATTAAACTCGT 57.495 33.333 8.01 0.00 40.73 4.18
6354 9212 6.804783 ACAAAATTTAAGGGCGATTAAACTCG 59.195 34.615 8.01 0.00 37.43 4.18
6355 9213 8.528917 AACAAAATTTAAGGGCGATTAAACTC 57.471 30.769 8.01 0.00 37.43 3.01
6356 9214 9.984190 TTAACAAAATTTAAGGGCGATTAAACT 57.016 25.926 8.01 0.00 37.43 2.66
6363 9221 9.360093 CACATATTTAACAAAATTTAAGGGCGA 57.640 29.630 0.00 0.00 0.00 5.54
6364 9222 8.599774 CCACATATTTAACAAAATTTAAGGGCG 58.400 33.333 0.00 0.00 0.00 6.13
6365 9223 9.443323 ACCACATATTTAACAAAATTTAAGGGC 57.557 29.630 0.00 0.00 0.00 5.19
6373 9231 9.598517 CAATAGGCACCACATATTTAACAAAAT 57.401 29.630 0.00 0.00 0.00 1.82
6374 9232 8.807118 TCAATAGGCACCACATATTTAACAAAA 58.193 29.630 0.00 0.00 0.00 2.44
6375 9233 8.354711 TCAATAGGCACCACATATTTAACAAA 57.645 30.769 0.00 0.00 0.00 2.83
6376 9234 7.946381 TCAATAGGCACCACATATTTAACAA 57.054 32.000 0.00 0.00 0.00 2.83
6377 9235 7.613801 ACTTCAATAGGCACCACATATTTAACA 59.386 33.333 0.00 0.00 0.00 2.41
6378 9236 7.996385 ACTTCAATAGGCACCACATATTTAAC 58.004 34.615 0.00 0.00 0.00 2.01
6379 9237 9.860650 ATACTTCAATAGGCACCACATATTTAA 57.139 29.630 0.00 0.00 0.00 1.52
6380 9238 9.860650 AATACTTCAATAGGCACCACATATTTA 57.139 29.630 0.00 0.00 0.00 1.40
6381 9239 8.766994 AATACTTCAATAGGCACCACATATTT 57.233 30.769 0.00 0.00 0.00 1.40
6382 9240 9.860650 TTAATACTTCAATAGGCACCACATATT 57.139 29.630 0.00 0.00 0.00 1.28
6383 9241 9.860650 TTTAATACTTCAATAGGCACCACATAT 57.139 29.630 0.00 0.00 0.00 1.78
6384 9242 9.337396 CTTTAATACTTCAATAGGCACCACATA 57.663 33.333 0.00 0.00 0.00 2.29
6385 9243 7.201821 GCTTTAATACTTCAATAGGCACCACAT 60.202 37.037 0.00 0.00 0.00 3.21
6386 9244 6.094881 GCTTTAATACTTCAATAGGCACCACA 59.905 38.462 0.00 0.00 0.00 4.17
6387 9245 6.094881 TGCTTTAATACTTCAATAGGCACCAC 59.905 38.462 0.00 0.00 0.00 4.16
6388 9246 6.184068 TGCTTTAATACTTCAATAGGCACCA 58.816 36.000 0.00 0.00 0.00 4.17
6389 9247 6.693315 TGCTTTAATACTTCAATAGGCACC 57.307 37.500 0.00 0.00 0.00 5.01
6390 9248 7.930217 TCATGCTTTAATACTTCAATAGGCAC 58.070 34.615 0.00 0.00 0.00 5.01
6391 9249 7.775093 ACTCATGCTTTAATACTTCAATAGGCA 59.225 33.333 0.00 0.00 0.00 4.75
6392 9250 8.072567 CACTCATGCTTTAATACTTCAATAGGC 58.927 37.037 0.00 0.00 0.00 3.93
6393 9251 9.113838 ACACTCATGCTTTAATACTTCAATAGG 57.886 33.333 0.00 0.00 0.00 2.57
6394 9252 9.926751 CACACTCATGCTTTAATACTTCAATAG 57.073 33.333 0.00 0.00 0.00 1.73
6395 9253 9.665719 TCACACTCATGCTTTAATACTTCAATA 57.334 29.630 0.00 0.00 0.00 1.90
6396 9254 8.565896 TCACACTCATGCTTTAATACTTCAAT 57.434 30.769 0.00 0.00 0.00 2.57
6397 9255 7.361201 GCTCACACTCATGCTTTAATACTTCAA 60.361 37.037 0.00 0.00 0.00 2.69
6398 9256 6.092670 GCTCACACTCATGCTTTAATACTTCA 59.907 38.462 0.00 0.00 0.00 3.02
6399 9257 6.092670 TGCTCACACTCATGCTTTAATACTTC 59.907 38.462 0.00 0.00 0.00 3.01
6400 9258 5.939883 TGCTCACACTCATGCTTTAATACTT 59.060 36.000 0.00 0.00 0.00 2.24
6401 9259 5.491070 TGCTCACACTCATGCTTTAATACT 58.509 37.500 0.00 0.00 0.00 2.12
6402 9260 5.801350 TGCTCACACTCATGCTTTAATAC 57.199 39.130 0.00 0.00 0.00 1.89
6403 9261 6.623549 GCTTTGCTCACACTCATGCTTTAATA 60.624 38.462 0.00 0.00 0.00 0.98
6404 9262 5.706916 CTTTGCTCACACTCATGCTTTAAT 58.293 37.500 0.00 0.00 0.00 1.40
6405 9263 4.557296 GCTTTGCTCACACTCATGCTTTAA 60.557 41.667 0.00 0.00 0.00 1.52
6406 9264 3.058016 GCTTTGCTCACACTCATGCTTTA 60.058 43.478 0.00 0.00 0.00 1.85
6407 9265 2.288030 GCTTTGCTCACACTCATGCTTT 60.288 45.455 0.00 0.00 0.00 3.51
6408 9266 1.268899 GCTTTGCTCACACTCATGCTT 59.731 47.619 0.00 0.00 0.00 3.91
6409 9267 0.879765 GCTTTGCTCACACTCATGCT 59.120 50.000 0.00 0.00 0.00 3.79
6410 9268 0.879765 AGCTTTGCTCACACTCATGC 59.120 50.000 0.00 0.00 30.62 4.06
6411 9269 4.754372 TTTAGCTTTGCTCACACTCATG 57.246 40.909 0.00 0.00 40.44 3.07
6412 9270 5.972107 AATTTAGCTTTGCTCACACTCAT 57.028 34.783 0.00 0.00 40.44 2.90
6413 9271 5.772825 AAATTTAGCTTTGCTCACACTCA 57.227 34.783 0.00 0.00 40.44 3.41
6414 9272 8.748380 ATTAAAATTTAGCTTTGCTCACACTC 57.252 30.769 0.00 0.00 40.44 3.51
6415 9273 9.546428 AAATTAAAATTTAGCTTTGCTCACACT 57.454 25.926 0.00 0.00 40.44 3.55
6434 9292 9.462174 CAGAAACACATGCACTCTAAAATTAAA 57.538 29.630 0.00 0.00 0.00 1.52
6435 9293 8.629158 ACAGAAACACATGCACTCTAAAATTAA 58.371 29.630 0.00 0.00 0.00 1.40
6436 9294 8.165239 ACAGAAACACATGCACTCTAAAATTA 57.835 30.769 0.00 0.00 0.00 1.40
6437 9295 7.042797 ACAGAAACACATGCACTCTAAAATT 57.957 32.000 0.00 0.00 0.00 1.82
6438 9296 6.639632 ACAGAAACACATGCACTCTAAAAT 57.360 33.333 0.00 0.00 0.00 1.82
6439 9297 6.540551 TGTACAGAAACACATGCACTCTAAAA 59.459 34.615 0.00 0.00 0.00 1.52
6440 9298 6.052360 TGTACAGAAACACATGCACTCTAAA 58.948 36.000 0.00 0.00 0.00 1.85
6441 9299 5.606505 TGTACAGAAACACATGCACTCTAA 58.393 37.500 0.00 0.00 0.00 2.10
6442 9300 5.208463 TGTACAGAAACACATGCACTCTA 57.792 39.130 0.00 0.00 0.00 2.43
6443 9301 4.071961 TGTACAGAAACACATGCACTCT 57.928 40.909 0.00 0.00 0.00 3.24
6444 9302 6.092670 ACATATGTACAGAAACACATGCACTC 59.907 38.462 6.56 0.00 37.71 3.51
6445 9303 5.939883 ACATATGTACAGAAACACATGCACT 59.060 36.000 6.56 0.00 37.71 4.40
6446 9304 6.182039 ACATATGTACAGAAACACATGCAC 57.818 37.500 6.56 0.00 37.71 4.57
6447 9305 6.816134 AACATATGTACAGAAACACATGCA 57.184 33.333 9.21 0.00 37.71 3.96
6448 9306 7.530010 AGAAACATATGTACAGAAACACATGC 58.470 34.615 9.21 0.00 37.71 4.06
6449 9307 9.897744 AAAGAAACATATGTACAGAAACACATG 57.102 29.630 9.21 0.00 39.61 3.21
6457 9315 9.559732 CCCATCATAAAGAAACATATGTACAGA 57.440 33.333 9.21 0.00 32.55 3.41
6458 9316 9.342308 ACCCATCATAAAGAAACATATGTACAG 57.658 33.333 9.21 0.00 32.55 2.74
6466 9324 9.699410 TCAAGATTACCCATCATAAAGAAACAT 57.301 29.630 0.00 0.00 33.75 2.71
6467 9325 9.177608 CTCAAGATTACCCATCATAAAGAAACA 57.822 33.333 0.00 0.00 33.75 2.83
6468 9326 9.178758 ACTCAAGATTACCCATCATAAAGAAAC 57.821 33.333 0.00 0.00 33.75 2.78
6469 9327 9.177608 CACTCAAGATTACCCATCATAAAGAAA 57.822 33.333 0.00 0.00 33.75 2.52
6470 9328 7.283127 GCACTCAAGATTACCCATCATAAAGAA 59.717 37.037 0.00 0.00 33.75 2.52
6471 9329 6.767902 GCACTCAAGATTACCCATCATAAAGA 59.232 38.462 0.00 0.00 33.75 2.52
6472 9330 6.016777 GGCACTCAAGATTACCCATCATAAAG 60.017 42.308 0.00 0.00 33.75 1.85
6473 9331 5.827797 GGCACTCAAGATTACCCATCATAAA 59.172 40.000 0.00 0.00 33.75 1.40
6474 9332 5.104151 TGGCACTCAAGATTACCCATCATAA 60.104 40.000 0.00 0.00 33.75 1.90
6475 9333 4.411869 TGGCACTCAAGATTACCCATCATA 59.588 41.667 0.00 0.00 33.75 2.15
6476 9334 3.202818 TGGCACTCAAGATTACCCATCAT 59.797 43.478 0.00 0.00 33.75 2.45
6477 9335 2.575735 TGGCACTCAAGATTACCCATCA 59.424 45.455 0.00 0.00 33.75 3.07
6708 9566 7.709182 TCCTTTTCGATATCAAACATATCACGT 59.291 33.333 3.12 0.00 32.09 4.49
6718 9576 5.097742 TGGAGCTCCTTTTCGATATCAAA 57.902 39.130 32.28 4.87 36.82 2.69
6804 9662 1.616159 GCTTAGCCTTGGGTTTCACA 58.384 50.000 0.00 0.00 0.00 3.58
6894 9752 4.736793 CGGCACAATCAAGATTTAAGATGC 59.263 41.667 0.00 0.00 0.00 3.91
6919 9777 4.084849 CGAAATACATCGGAGTTGCTGATC 60.085 45.833 0.00 0.00 40.68 2.92
6992 9850 3.681593 TCACATAACCACAAACTAGGGC 58.318 45.455 0.00 0.00 0.00 5.19
7046 9904 7.038659 ACTCTTCAAGTCAGATTATGCTACAC 58.961 38.462 0.00 0.00 30.02 2.90
7111 9970 1.829533 GGGGCATGCTACACCATGG 60.830 63.158 18.92 11.19 42.18 3.66
7180 10039 1.109296 GTTAACAAACGCACGCACAG 58.891 50.000 0.00 0.00 0.00 3.66
7181 10040 0.248134 GGTTAACAAACGCACGCACA 60.248 50.000 8.10 0.00 0.00 4.57
7189 10048 3.249080 ACACTCATTCCGGTTAACAAACG 59.751 43.478 8.10 1.81 42.36 3.60
7222 10081 8.621532 AACACAGAACAAACATATACTCACAT 57.378 30.769 0.00 0.00 0.00 3.21
7223 10082 8.445275 AAACACAGAACAAACATATACTCACA 57.555 30.769 0.00 0.00 0.00 3.58
7225 10084 9.772973 ACTAAACACAGAACAAACATATACTCA 57.227 29.630 0.00 0.00 0.00 3.41
7368 11416 3.619487 CGGGGACATTTTTGCCATCAAAT 60.619 43.478 0.00 0.00 41.37 2.32
7381 11429 0.919289 ACCTTGGGATCGGGGACATT 60.919 55.000 0.00 0.00 0.00 2.71
7433 11481 6.208988 TGTATGAGAATGATACTATCGGGC 57.791 41.667 0.00 0.00 36.09 6.13
7439 11487 9.702494 CAGCTTGAATGTATGAGAATGATACTA 57.298 33.333 0.00 0.00 36.09 1.82
7467 11515 3.881688 CCATTTGGGTTTGTTTTCATGCA 59.118 39.130 0.00 0.00 0.00 3.96
7528 11591 2.266055 CGAGCTGGGTGTTCCTCC 59.734 66.667 0.00 0.00 36.20 4.30
7556 11621 7.776933 TCATCTGTAACTTTCATCAGCATAC 57.223 36.000 0.00 0.00 0.00 2.39
7570 11635 7.484035 GGTCAATACCATCTTCATCTGTAAC 57.516 40.000 0.00 0.00 45.98 2.50
7837 11902 2.751259 TGATGAGATTTTGCAGAGTGGC 59.249 45.455 0.00 0.00 0.00 5.01
7869 11934 1.132640 GGCGCGAGAACATGAACAC 59.867 57.895 12.10 0.00 0.00 3.32
7901 11966 4.749598 TGCGTTGATTCAGTTGCGATATAT 59.250 37.500 0.00 0.00 0.00 0.86
7913 11978 1.066303 GGTGGTTTGTGCGTTGATTCA 59.934 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.