Multiple sequence alignment - TraesCS6B01G268900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G268900 chr6B 100.000 3436 0 0 3270 6705 483606116 483602681 0.000000e+00 6346.0
1 TraesCS6B01G268900 chr6B 100.000 2849 0 0 1 2849 483609385 483606537 0.000000e+00 5262.0
2 TraesCS6B01G268900 chr6B 98.335 901 13 2 1949 2849 171199479 171200377 0.000000e+00 1580.0
3 TraesCS6B01G268900 chr6B 97.770 897 18 2 1949 2845 567855627 567854733 0.000000e+00 1544.0
4 TraesCS6B01G268900 chr6B 86.577 298 34 3 161 454 479834283 479833988 2.330000e-84 324.0
5 TraesCS6B01G268900 chr6B 85.135 148 18 4 14 158 479834340 479834194 1.510000e-31 148.0
6 TraesCS6B01G268900 chr6A 95.939 2930 92 12 3270 6192 477131982 477134891 0.000000e+00 4726.0
7 TraesCS6B01G268900 chr6A 93.798 1048 23 10 508 1529 477130346 477131377 0.000000e+00 1537.0
8 TraesCS6B01G268900 chr6A 95.508 423 10 5 1534 1950 477131548 477131967 0.000000e+00 667.0
9 TraesCS6B01G268900 chr6A 83.442 459 36 19 6193 6643 477136085 477136511 2.270000e-104 390.0
10 TraesCS6B01G268900 chr6A 95.455 66 3 0 5977 6042 477135992 477136057 9.200000e-19 106.0
11 TraesCS6B01G268900 chr6D 96.534 1789 47 7 3271 5057 336826489 336828264 0.000000e+00 2946.0
12 TraesCS6B01G268900 chr6D 96.961 1053 27 4 5097 6146 336828262 336829312 0.000000e+00 1762.0
13 TraesCS6B01G268900 chr6D 93.928 1054 20 12 508 1529 336824863 336825904 0.000000e+00 1552.0
14 TraesCS6B01G268900 chr6D 96.479 426 7 4 1530 1950 336826051 336826473 0.000000e+00 697.0
15 TraesCS6B01G268900 chr6D 86.731 520 34 19 6161 6661 336829376 336829879 4.570000e-151 545.0
16 TraesCS6B01G268900 chr2B 98.719 859 10 1 1949 2807 214714577 214713720 0.000000e+00 1524.0
17 TraesCS6B01G268900 chr7B 96.899 903 23 4 1950 2849 748448115 748449015 0.000000e+00 1507.0
18 TraesCS6B01G268900 chr7B 98.889 810 7 2 1949 2757 680660176 680660984 0.000000e+00 1445.0
19 TraesCS6B01G268900 chr7B 97.778 45 1 0 1665 1709 340651305 340651261 2.000000e-10 78.7
20 TraesCS6B01G268900 chr7B 89.655 58 4 2 1654 1709 584758680 584758737 9.330000e-09 73.1
21 TraesCS6B01G268900 chr1A 97.791 860 17 2 1948 2806 10814170 10813312 0.000000e+00 1482.0
22 TraesCS6B01G268900 chr1A 95.833 48 2 0 1662 1709 516356549 516356502 2.000000e-10 78.7
23 TraesCS6B01G268900 chr1A 84.507 71 8 3 1640 1709 574832622 574832690 4.340000e-07 67.6
24 TraesCS6B01G268900 chr5D 94.469 904 45 5 1949 2849 443062023 443061122 0.000000e+00 1387.0
25 TraesCS6B01G268900 chr1D 94.475 905 42 7 1949 2849 445319495 445320395 0.000000e+00 1387.0
26 TraesCS6B01G268900 chr1D 94.248 904 47 5 1949 2849 782947 783848 0.000000e+00 1376.0
27 TraesCS6B01G268900 chr1D 95.556 45 2 0 1665 1709 218903691 218903647 9.330000e-09 73.1
28 TraesCS6B01G268900 chr3B 83.778 900 126 18 1947 2837 814835616 814834728 0.000000e+00 835.0
29 TraesCS6B01G268900 chr4A 94.000 50 3 0 1660 1709 183141094 183141143 7.210000e-10 76.8
30 TraesCS6B01G268900 chr4A 92.308 52 3 1 1658 1709 439011711 439011661 9.330000e-09 73.1
31 TraesCS6B01G268900 chr4A 87.931 58 5 2 24 81 497616146 497616091 4.340000e-07 67.6
32 TraesCS6B01G268900 chr3A 91.304 46 2 2 36 81 492376723 492376680 2.020000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G268900 chr6B 483602681 483609385 6704 True 5804.0 6346 100.0000 1 6705 2 chr6B.!!$R3 6704
1 TraesCS6B01G268900 chr6B 171199479 171200377 898 False 1580.0 1580 98.3350 1949 2849 1 chr6B.!!$F1 900
2 TraesCS6B01G268900 chr6B 567854733 567855627 894 True 1544.0 1544 97.7700 1949 2845 1 chr6B.!!$R1 896
3 TraesCS6B01G268900 chr6A 477130346 477136511 6165 False 1485.2 4726 92.8284 508 6643 5 chr6A.!!$F1 6135
4 TraesCS6B01G268900 chr6D 336824863 336829879 5016 False 1500.4 2946 94.1266 508 6661 5 chr6D.!!$F1 6153
5 TraesCS6B01G268900 chr2B 214713720 214714577 857 True 1524.0 1524 98.7190 1949 2807 1 chr2B.!!$R1 858
6 TraesCS6B01G268900 chr7B 748448115 748449015 900 False 1507.0 1507 96.8990 1950 2849 1 chr7B.!!$F3 899
7 TraesCS6B01G268900 chr7B 680660176 680660984 808 False 1445.0 1445 98.8890 1949 2757 1 chr7B.!!$F2 808
8 TraesCS6B01G268900 chr1A 10813312 10814170 858 True 1482.0 1482 97.7910 1948 2806 1 chr1A.!!$R1 858
9 TraesCS6B01G268900 chr5D 443061122 443062023 901 True 1387.0 1387 94.4690 1949 2849 1 chr5D.!!$R1 900
10 TraesCS6B01G268900 chr1D 445319495 445320395 900 False 1387.0 1387 94.4750 1949 2849 1 chr1D.!!$F2 900
11 TraesCS6B01G268900 chr1D 782947 783848 901 False 1376.0 1376 94.2480 1949 2849 1 chr1D.!!$F1 900
12 TraesCS6B01G268900 chr3B 814834728 814835616 888 True 835.0 835 83.7780 1947 2837 1 chr3B.!!$R1 890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 453 0.035598 TGGATCGAAAGCGGACCAAA 59.964 50.000 0.00 0.0 38.98 3.28 F
472 473 0.249741 ACGCGTGGCTAAAACAGAGT 60.250 50.000 12.93 0.0 0.00 3.24 F
1652 1851 0.944386 AACACGCAACAACTAGGCTG 59.056 50.000 0.00 0.0 0.00 4.85 F
2736 2949 3.710722 CCTCCCAGAAGCCACGCT 61.711 66.667 0.00 0.0 42.56 5.07 F
3786 4002 1.952296 GAATCGGATTCTTGCCAGCAT 59.048 47.619 20.70 0.0 36.37 3.79 F
3907 4123 0.522626 TTGATGGCTGATGCACAACG 59.477 50.000 0.00 0.0 41.91 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 1901 6.300354 TCTTTCTTTCTTTTTGAGCCTACG 57.700 37.500 0.0 0.0 0.00 3.51 R
1896 2101 6.619801 AGGAAACATAAACAGTGTGAGAAC 57.380 37.500 0.0 0.0 0.00 3.01 R
3330 3546 9.445878 CTATTGGACTGATAATGACTGCATAAT 57.554 33.333 0.0 0.0 33.44 1.28 R
3899 4115 2.548904 AGGCGTATAAAAACGTTGTGCA 59.451 40.909 0.0 0.0 44.64 4.57 R
5647 5864 1.273438 GGTCTGTTACCTCTACCCCCA 60.273 57.143 0.0 0.0 45.75 4.96 R
5905 6123 0.609131 AGTGGCGAAATGGGGAACTG 60.609 55.000 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.263941 CCGAAAAGCCGGGTTGAG 58.736 61.111 21.54 13.74 45.43 3.02
26 27 2.561373 CGAAAAGCCGGGTTGAGC 59.439 61.111 21.54 11.20 0.00 4.26
27 28 1.966451 CGAAAAGCCGGGTTGAGCT 60.966 57.895 21.54 0.00 42.40 4.09
28 29 1.876664 GAAAAGCCGGGTTGAGCTC 59.123 57.895 21.54 6.82 38.74 4.09
29 30 0.889186 GAAAAGCCGGGTTGAGCTCA 60.889 55.000 21.54 13.74 38.74 4.26
30 31 0.467290 AAAAGCCGGGTTGAGCTCAA 60.467 50.000 25.16 25.16 38.74 3.02
31 32 0.467290 AAAGCCGGGTTGAGCTCAAA 60.467 50.000 29.99 12.23 38.74 2.69
32 33 0.251341 AAGCCGGGTTGAGCTCAAAT 60.251 50.000 29.99 9.77 38.74 2.32
33 34 0.678048 AGCCGGGTTGAGCTCAAATC 60.678 55.000 29.99 22.95 37.63 2.17
34 35 1.657751 GCCGGGTTGAGCTCAAATCC 61.658 60.000 29.99 28.46 37.63 3.01
35 36 1.369091 CCGGGTTGAGCTCAAATCCG 61.369 60.000 38.57 38.57 45.70 4.18
36 37 3.551259 GGGTTGAGCTCAAATCCGA 57.449 52.632 29.99 4.92 37.63 4.55
37 38 1.087501 GGGTTGAGCTCAAATCCGAC 58.912 55.000 29.99 17.21 37.63 4.79
38 39 1.087501 GGTTGAGCTCAAATCCGACC 58.912 55.000 29.99 22.10 37.63 4.79
39 40 0.721718 GTTGAGCTCAAATCCGACCG 59.278 55.000 29.99 0.00 37.63 4.79
40 41 0.391130 TTGAGCTCAAATCCGACCGG 60.391 55.000 26.61 0.00 32.11 5.28
49 50 2.441532 TCCGACCGGATCCACTCC 60.442 66.667 9.46 0.00 39.76 3.85
50 51 2.758327 CCGACCGGATCCACTCCA 60.758 66.667 9.46 0.00 45.24 3.86
51 52 2.355986 CCGACCGGATCCACTCCAA 61.356 63.158 9.46 0.00 45.24 3.53
52 53 1.594833 CGACCGGATCCACTCCAAA 59.405 57.895 9.46 0.00 45.24 3.28
53 54 0.178068 CGACCGGATCCACTCCAAAT 59.822 55.000 9.46 0.00 45.24 2.32
54 55 1.806623 CGACCGGATCCACTCCAAATC 60.807 57.143 9.46 0.00 45.24 2.17
55 56 0.546598 ACCGGATCCACTCCAAATCC 59.453 55.000 9.46 0.00 45.24 3.01
57 58 3.403936 GGATCCACTCCAAATCCGG 57.596 57.895 6.95 0.00 44.26 5.14
58 59 0.546598 GGATCCACTCCAAATCCGGT 59.453 55.000 6.95 0.00 44.26 5.28
59 60 1.475213 GGATCCACTCCAAATCCGGTC 60.475 57.143 6.95 0.00 44.26 4.79
60 61 0.178068 ATCCACTCCAAATCCGGTCG 59.822 55.000 0.00 0.00 0.00 4.79
61 62 2.106683 CCACTCCAAATCCGGTCGC 61.107 63.158 0.00 0.00 0.00 5.19
62 63 2.106683 CACTCCAAATCCGGTCGCC 61.107 63.158 0.00 0.00 0.00 5.54
63 64 2.267642 CTCCAAATCCGGTCGCCA 59.732 61.111 0.00 0.00 0.00 5.69
64 65 1.815421 CTCCAAATCCGGTCGCCAG 60.815 63.158 0.00 0.00 0.00 4.85
65 66 2.824041 CCAAATCCGGTCGCCAGG 60.824 66.667 0.00 0.00 0.00 4.45
66 67 2.046314 CAAATCCGGTCGCCAGGT 60.046 61.111 0.00 0.00 0.00 4.00
67 68 2.046314 AAATCCGGTCGCCAGGTG 60.046 61.111 0.00 0.00 0.00 4.00
68 69 4.778143 AATCCGGTCGCCAGGTGC 62.778 66.667 0.00 0.00 0.00 5.01
77 78 2.486966 GCCAGGTGCGCTGAAATC 59.513 61.111 9.73 0.00 0.00 2.17
78 79 2.334946 GCCAGGTGCGCTGAAATCA 61.335 57.895 9.73 0.00 0.00 2.57
79 80 1.503542 CCAGGTGCGCTGAAATCAC 59.496 57.895 9.73 0.00 0.00 3.06
80 81 1.133253 CAGGTGCGCTGAAATCACG 59.867 57.895 9.73 0.00 0.00 4.35
84 85 2.276058 GCGCTGAAATCACGCGAC 60.276 61.111 15.93 13.86 43.50 5.19
85 86 2.730672 GCGCTGAAATCACGCGACT 61.731 57.895 15.93 0.00 43.50 4.18
86 87 1.057822 CGCTGAAATCACGCGACTG 59.942 57.895 15.93 0.27 42.05 3.51
87 88 1.421485 GCTGAAATCACGCGACTGG 59.579 57.895 15.93 0.00 0.00 4.00
88 89 1.014044 GCTGAAATCACGCGACTGGA 61.014 55.000 15.93 4.91 0.00 3.86
89 90 0.994995 CTGAAATCACGCGACTGGAG 59.005 55.000 15.93 0.00 0.00 3.86
90 91 0.317160 TGAAATCACGCGACTGGAGT 59.683 50.000 15.93 0.45 0.00 3.85
91 92 1.270094 TGAAATCACGCGACTGGAGTT 60.270 47.619 15.93 10.15 0.00 3.01
92 93 1.126846 GAAATCACGCGACTGGAGTTG 59.873 52.381 15.93 0.00 0.00 3.16
93 94 0.670546 AATCACGCGACTGGAGTTGG 60.671 55.000 15.93 0.00 0.00 3.77
94 95 1.532604 ATCACGCGACTGGAGTTGGA 61.533 55.000 15.93 0.00 0.00 3.53
95 96 2.022129 CACGCGACTGGAGTTGGAC 61.022 63.158 15.93 0.00 0.00 4.02
96 97 2.338620 CGCGACTGGAGTTGGACA 59.661 61.111 0.00 0.00 0.00 4.02
97 98 1.734477 CGCGACTGGAGTTGGACAG 60.734 63.158 0.00 0.00 40.48 3.51
98 99 2.029844 GCGACTGGAGTTGGACAGC 61.030 63.158 0.00 0.00 38.25 4.40
99 100 1.374758 CGACTGGAGTTGGACAGCC 60.375 63.158 0.00 0.00 38.25 4.85
100 101 1.821061 CGACTGGAGTTGGACAGCCT 61.821 60.000 0.00 0.00 38.25 4.58
101 102 0.036858 GACTGGAGTTGGACAGCCTC 60.037 60.000 0.00 0.00 38.25 4.70
102 103 0.764369 ACTGGAGTTGGACAGCCTCA 60.764 55.000 0.00 0.00 38.25 3.86
103 104 0.036577 CTGGAGTTGGACAGCCTCAG 60.037 60.000 0.00 0.00 34.31 3.35
104 105 0.471780 TGGAGTTGGACAGCCTCAGA 60.472 55.000 0.00 0.00 34.31 3.27
105 106 0.036858 GGAGTTGGACAGCCTCAGAC 60.037 60.000 0.00 0.00 34.31 3.51
106 107 0.681733 GAGTTGGACAGCCTCAGACA 59.318 55.000 0.00 0.00 34.31 3.41
107 108 1.277557 GAGTTGGACAGCCTCAGACAT 59.722 52.381 0.00 0.00 34.31 3.06
108 109 1.277557 AGTTGGACAGCCTCAGACATC 59.722 52.381 0.00 0.00 34.31 3.06
109 110 1.002430 GTTGGACAGCCTCAGACATCA 59.998 52.381 0.00 0.00 34.31 3.07
110 111 1.351076 TGGACAGCCTCAGACATCAA 58.649 50.000 0.00 0.00 34.31 2.57
111 112 1.277273 TGGACAGCCTCAGACATCAAG 59.723 52.381 0.00 0.00 34.31 3.02
112 113 1.406614 GGACAGCCTCAGACATCAAGG 60.407 57.143 0.00 0.00 0.00 3.61
113 114 1.552337 GACAGCCTCAGACATCAAGGA 59.448 52.381 4.89 0.00 31.44 3.36
114 115 1.980765 ACAGCCTCAGACATCAAGGAA 59.019 47.619 4.89 0.00 31.44 3.36
115 116 2.373169 ACAGCCTCAGACATCAAGGAAA 59.627 45.455 4.89 0.00 31.44 3.13
116 117 2.746362 CAGCCTCAGACATCAAGGAAAC 59.254 50.000 4.89 0.00 31.44 2.78
117 118 1.734465 GCCTCAGACATCAAGGAAACG 59.266 52.381 4.89 0.00 31.44 3.60
118 119 2.350522 CCTCAGACATCAAGGAAACGG 58.649 52.381 0.00 0.00 31.44 4.44
119 120 2.350522 CTCAGACATCAAGGAAACGGG 58.649 52.381 0.00 0.00 0.00 5.28
120 121 1.003118 TCAGACATCAAGGAAACGGGG 59.997 52.381 0.00 0.00 0.00 5.73
121 122 0.322546 AGACATCAAGGAAACGGGGC 60.323 55.000 0.00 0.00 0.00 5.80
122 123 0.322546 GACATCAAGGAAACGGGGCT 60.323 55.000 0.00 0.00 0.00 5.19
123 124 0.609131 ACATCAAGGAAACGGGGCTG 60.609 55.000 0.00 0.00 0.00 4.85
124 125 1.678970 ATCAAGGAAACGGGGCTGC 60.679 57.895 0.00 0.00 0.00 5.25
125 126 3.737172 CAAGGAAACGGGGCTGCG 61.737 66.667 0.00 0.00 0.00 5.18
126 127 3.948719 AAGGAAACGGGGCTGCGA 61.949 61.111 0.00 0.00 0.00 5.10
127 128 3.485346 AAGGAAACGGGGCTGCGAA 62.485 57.895 0.00 0.00 0.00 4.70
128 129 2.969300 AAGGAAACGGGGCTGCGAAA 62.969 55.000 0.00 0.00 0.00 3.46
129 130 2.561373 GAAACGGGGCTGCGAAAG 59.439 61.111 0.00 0.00 0.00 2.62
130 131 2.978018 GAAACGGGGCTGCGAAAGG 61.978 63.158 0.00 0.00 0.00 3.11
134 135 4.803908 GGGGCTGCGAAAGGGGAG 62.804 72.222 0.00 0.00 0.00 4.30
135 136 4.803908 GGGCTGCGAAAGGGGAGG 62.804 72.222 0.00 0.00 0.00 4.30
136 137 4.803908 GGCTGCGAAAGGGGAGGG 62.804 72.222 0.00 0.00 0.00 4.30
137 138 3.717294 GCTGCGAAAGGGGAGGGA 61.717 66.667 0.00 0.00 0.00 4.20
138 139 2.269241 CTGCGAAAGGGGAGGGAC 59.731 66.667 0.00 0.00 0.00 4.46
139 140 3.665675 CTGCGAAAGGGGAGGGACG 62.666 68.421 0.00 0.00 0.00 4.79
140 141 4.468689 GCGAAAGGGGAGGGACGG 62.469 72.222 0.00 0.00 0.00 4.79
141 142 3.782443 CGAAAGGGGAGGGACGGG 61.782 72.222 0.00 0.00 0.00 5.28
142 143 4.111053 GAAAGGGGAGGGACGGGC 62.111 72.222 0.00 0.00 0.00 6.13
143 144 4.677151 AAAGGGGAGGGACGGGCT 62.677 66.667 0.00 0.00 0.00 5.19
144 145 4.677151 AAGGGGAGGGACGGGCTT 62.677 66.667 0.00 0.00 0.00 4.35
156 157 3.414700 GGGCTTCGCGTCTGTGTG 61.415 66.667 5.77 0.00 0.00 3.82
157 158 3.414700 GGCTTCGCGTCTGTGTGG 61.415 66.667 5.77 0.00 0.00 4.17
158 159 2.661866 GCTTCGCGTCTGTGTGGT 60.662 61.111 5.77 0.00 0.00 4.16
159 160 2.943345 GCTTCGCGTCTGTGTGGTG 61.943 63.158 5.77 0.00 0.00 4.17
160 161 2.943345 CTTCGCGTCTGTGTGGTGC 61.943 63.158 5.77 0.00 0.00 5.01
161 162 3.439513 TTCGCGTCTGTGTGGTGCT 62.440 57.895 5.77 0.00 0.00 4.40
162 163 3.705638 CGCGTCTGTGTGGTGCTG 61.706 66.667 0.00 0.00 0.00 4.41
163 164 2.280119 GCGTCTGTGTGGTGCTGA 60.280 61.111 0.00 0.00 0.00 4.26
164 165 1.887242 GCGTCTGTGTGGTGCTGAA 60.887 57.895 0.00 0.00 0.00 3.02
165 166 1.436195 GCGTCTGTGTGGTGCTGAAA 61.436 55.000 0.00 0.00 0.00 2.69
166 167 1.229428 CGTCTGTGTGGTGCTGAAAT 58.771 50.000 0.00 0.00 0.00 2.17
167 168 1.195448 CGTCTGTGTGGTGCTGAAATC 59.805 52.381 0.00 0.00 0.00 2.17
168 169 2.221169 GTCTGTGTGGTGCTGAAATCA 58.779 47.619 0.00 0.00 0.00 2.57
169 170 2.225019 GTCTGTGTGGTGCTGAAATCAG 59.775 50.000 6.05 6.05 46.40 2.90
170 171 1.538512 CTGTGTGGTGCTGAAATCAGG 59.461 52.381 12.09 0.00 43.94 3.86
171 172 0.242017 GTGTGGTGCTGAAATCAGGC 59.758 55.000 12.09 5.46 43.94 4.85
172 173 1.236616 TGTGGTGCTGAAATCAGGCG 61.237 55.000 12.09 0.00 43.94 5.52
173 174 1.675310 TGGTGCTGAAATCAGGCGG 60.675 57.895 12.09 0.00 43.94 6.13
174 175 2.486966 GTGCTGAAATCAGGCGGC 59.513 61.111 12.09 0.00 43.94 6.53
175 176 2.042831 GTGCTGAAATCAGGCGGCT 61.043 57.895 5.25 5.25 43.94 5.52
176 177 2.042259 TGCTGAAATCAGGCGGCTG 61.042 57.895 31.58 31.58 43.94 4.85
177 178 2.768492 GCTGAAATCAGGCGGCTGG 61.768 63.158 35.20 20.57 43.94 4.85
178 179 1.078214 CTGAAATCAGGCGGCTGGA 60.078 57.895 35.20 23.09 40.20 3.86
179 180 1.078214 TGAAATCAGGCGGCTGGAG 60.078 57.895 35.20 13.75 0.00 3.86
180 181 1.078143 GAAATCAGGCGGCTGGAGT 60.078 57.895 35.20 21.49 0.00 3.85
181 182 0.678048 GAAATCAGGCGGCTGGAGTT 60.678 55.000 35.20 25.86 0.00 3.01
182 183 0.962356 AAATCAGGCGGCTGGAGTTG 60.962 55.000 35.20 13.10 0.00 3.16
183 184 2.826777 AATCAGGCGGCTGGAGTTGG 62.827 60.000 35.20 11.44 0.00 3.77
184 185 4.020617 CAGGCGGCTGGAGTTGGA 62.021 66.667 30.03 0.00 0.00 3.53
185 186 4.021925 AGGCGGCTGGAGTTGGAC 62.022 66.667 12.25 0.00 0.00 4.02
186 187 4.329545 GGCGGCTGGAGTTGGACA 62.330 66.667 0.00 0.00 0.00 4.02
187 188 2.743928 GCGGCTGGAGTTGGACAG 60.744 66.667 0.00 0.00 37.76 3.51
191 192 2.352805 CTGGAGTTGGACAGCCCC 59.647 66.667 0.00 0.00 0.00 5.80
192 193 3.612247 CTGGAGTTGGACAGCCCCG 62.612 68.421 0.00 0.00 0.00 5.73
193 194 4.410400 GGAGTTGGACAGCCCCGG 62.410 72.222 0.00 0.00 0.00 5.73
194 195 4.410400 GAGTTGGACAGCCCCGGG 62.410 72.222 15.80 15.80 0.00 5.73
205 206 2.358619 CCCCGGGCATCAAGGAAA 59.641 61.111 17.73 0.00 0.00 3.13
206 207 2.052104 CCCCGGGCATCAAGGAAAC 61.052 63.158 17.73 0.00 0.00 2.78
207 208 2.406616 CCCGGGCATCAAGGAAACG 61.407 63.158 8.08 0.00 0.00 3.60
208 209 1.376683 CCGGGCATCAAGGAAACGA 60.377 57.895 0.00 0.00 0.00 3.85
209 210 0.958382 CCGGGCATCAAGGAAACGAA 60.958 55.000 0.00 0.00 0.00 3.85
210 211 0.447801 CGGGCATCAAGGAAACGAAG 59.552 55.000 0.00 0.00 0.00 3.79
211 212 0.171231 GGGCATCAAGGAAACGAAGC 59.829 55.000 0.00 0.00 0.00 3.86
212 213 1.168714 GGCATCAAGGAAACGAAGCT 58.831 50.000 0.00 0.00 0.00 3.74
213 214 1.135575 GGCATCAAGGAAACGAAGCTG 60.136 52.381 0.00 0.00 0.00 4.24
214 215 1.730446 GCATCAAGGAAACGAAGCTGC 60.730 52.381 0.00 0.00 0.00 5.25
215 216 0.798776 ATCAAGGAAACGAAGCTGCG 59.201 50.000 14.05 14.05 37.29 5.18
216 217 0.249699 TCAAGGAAACGAAGCTGCGA 60.250 50.000 24.02 0.00 34.83 5.10
217 218 0.586319 CAAGGAAACGAAGCTGCGAA 59.414 50.000 24.02 0.00 34.83 4.70
218 219 1.002900 CAAGGAAACGAAGCTGCGAAA 60.003 47.619 24.02 0.00 34.83 3.46
219 220 0.868406 AGGAAACGAAGCTGCGAAAG 59.132 50.000 24.02 0.00 34.83 2.62
220 221 0.110192 GGAAACGAAGCTGCGAAAGG 60.110 55.000 24.02 0.00 34.83 3.11
221 222 0.110192 GAAACGAAGCTGCGAAAGGG 60.110 55.000 24.02 0.00 34.83 3.95
222 223 1.515521 AAACGAAGCTGCGAAAGGGG 61.516 55.000 24.02 0.00 34.83 4.79
223 224 2.047274 CGAAGCTGCGAAAGGGGA 60.047 61.111 9.01 0.00 0.00 4.81
224 225 2.103042 CGAAGCTGCGAAAGGGGAG 61.103 63.158 9.01 0.00 0.00 4.30
225 226 1.296715 GAAGCTGCGAAAGGGGAGA 59.703 57.895 0.00 0.00 0.00 3.71
226 227 0.742635 GAAGCTGCGAAAGGGGAGAG 60.743 60.000 0.00 0.00 0.00 3.20
227 228 2.124942 GCTGCGAAAGGGGAGAGG 60.125 66.667 0.00 0.00 0.00 3.69
228 229 2.660064 GCTGCGAAAGGGGAGAGGA 61.660 63.158 0.00 0.00 0.00 3.71
229 230 1.219393 CTGCGAAAGGGGAGAGGAC 59.781 63.158 0.00 0.00 0.00 3.85
230 231 2.184579 GCGAAAGGGGAGAGGACG 59.815 66.667 0.00 0.00 0.00 4.79
231 232 2.893398 CGAAAGGGGAGAGGACGG 59.107 66.667 0.00 0.00 0.00 4.79
232 233 2.722201 CGAAAGGGGAGAGGACGGG 61.722 68.421 0.00 0.00 0.00 5.28
233 234 3.009714 AAAGGGGAGAGGACGGGC 61.010 66.667 0.00 0.00 0.00 6.13
234 235 3.564347 AAAGGGGAGAGGACGGGCT 62.564 63.158 0.00 0.00 0.00 5.19
235 236 3.564347 AAGGGGAGAGGACGGGCTT 62.564 63.158 0.00 0.00 0.00 4.35
236 237 3.471806 GGGGAGAGGACGGGCTTC 61.472 72.222 0.00 0.00 0.00 3.86
237 238 3.839432 GGGAGAGGACGGGCTTCG 61.839 72.222 0.00 0.00 45.88 3.79
238 239 4.516195 GGAGAGGACGGGCTTCGC 62.516 72.222 0.00 0.00 43.89 4.70
239 240 4.856607 GAGAGGACGGGCTTCGCG 62.857 72.222 0.00 0.00 45.13 5.87
266 267 4.400109 GACAGCGCACGGACGAGA 62.400 66.667 11.47 0.00 34.06 4.04
267 268 3.891586 GACAGCGCACGGACGAGAA 62.892 63.158 11.47 0.00 34.06 2.87
268 269 2.733218 CAGCGCACGGACGAGAAA 60.733 61.111 11.47 0.00 34.06 2.52
269 270 2.028484 AGCGCACGGACGAGAAAA 59.972 55.556 11.47 0.00 34.06 2.29
270 271 1.593209 AGCGCACGGACGAGAAAAA 60.593 52.632 11.47 0.00 34.06 1.94
271 272 0.949105 AGCGCACGGACGAGAAAAAT 60.949 50.000 11.47 0.00 34.06 1.82
272 273 0.789383 GCGCACGGACGAGAAAAATG 60.789 55.000 0.30 0.00 34.06 2.32
273 274 0.179225 CGCACGGACGAGAAAAATGG 60.179 55.000 0.00 0.00 34.06 3.16
274 275 0.454452 GCACGGACGAGAAAAATGGC 60.454 55.000 0.00 0.00 0.00 4.40
275 276 0.179225 CACGGACGAGAAAAATGGCG 60.179 55.000 0.00 0.00 0.00 5.69
276 277 1.296056 ACGGACGAGAAAAATGGCGG 61.296 55.000 0.00 0.00 0.00 6.13
277 278 1.136774 GGACGAGAAAAATGGCGGC 59.863 57.895 0.00 0.00 0.00 6.53
278 279 1.226018 GACGAGAAAAATGGCGGCG 60.226 57.895 0.51 0.51 0.00 6.46
279 280 2.100216 CGAGAAAAATGGCGGCGG 59.900 61.111 9.78 0.00 0.00 6.13
280 281 2.202610 GAGAAAAATGGCGGCGGC 60.203 61.111 27.76 27.76 38.90 6.53
281 282 4.114997 AGAAAAATGGCGGCGGCG 62.115 61.111 28.70 28.70 41.24 6.46
315 316 4.364686 GGGTCAGGGGGAGGGGAA 62.365 72.222 0.00 0.00 0.00 3.97
316 317 2.044620 GGTCAGGGGGAGGGGAAT 59.955 66.667 0.00 0.00 0.00 3.01
317 318 1.320512 GGTCAGGGGGAGGGGAATA 59.679 63.158 0.00 0.00 0.00 1.75
318 319 0.768609 GGTCAGGGGGAGGGGAATAG 60.769 65.000 0.00 0.00 0.00 1.73
319 320 0.267960 GTCAGGGGGAGGGGAATAGA 59.732 60.000 0.00 0.00 0.00 1.98
320 321 1.031939 TCAGGGGGAGGGGAATAGAA 58.968 55.000 0.00 0.00 0.00 2.10
321 322 1.371774 TCAGGGGGAGGGGAATAGAAA 59.628 52.381 0.00 0.00 0.00 2.52
322 323 2.214201 CAGGGGGAGGGGAATAGAAAA 58.786 52.381 0.00 0.00 0.00 2.29
323 324 2.585432 CAGGGGGAGGGGAATAGAAAAA 59.415 50.000 0.00 0.00 0.00 1.94
324 325 2.859404 AGGGGGAGGGGAATAGAAAAAG 59.141 50.000 0.00 0.00 0.00 2.27
325 326 2.091278 GGGGGAGGGGAATAGAAAAAGG 60.091 54.545 0.00 0.00 0.00 3.11
326 327 2.091278 GGGGAGGGGAATAGAAAAAGGG 60.091 54.545 0.00 0.00 0.00 3.95
327 328 2.091278 GGGAGGGGAATAGAAAAAGGGG 60.091 54.545 0.00 0.00 0.00 4.79
328 329 2.667470 GAGGGGAATAGAAAAAGGGGC 58.333 52.381 0.00 0.00 0.00 5.80
329 330 1.063942 AGGGGAATAGAAAAAGGGGCG 60.064 52.381 0.00 0.00 0.00 6.13
330 331 0.744874 GGGAATAGAAAAAGGGGCGC 59.255 55.000 0.00 0.00 0.00 6.53
331 332 1.470051 GGAATAGAAAAAGGGGCGCA 58.530 50.000 10.83 0.00 0.00 6.09
332 333 2.031870 GGAATAGAAAAAGGGGCGCAT 58.968 47.619 10.83 0.00 0.00 4.73
333 334 2.223805 GGAATAGAAAAAGGGGCGCATG 60.224 50.000 10.83 0.00 0.00 4.06
334 335 2.143876 ATAGAAAAAGGGGCGCATGT 57.856 45.000 10.83 0.00 0.00 3.21
335 336 1.173043 TAGAAAAAGGGGCGCATGTG 58.827 50.000 10.83 0.66 0.00 3.21
336 337 0.827507 AGAAAAAGGGGCGCATGTGT 60.828 50.000 10.83 0.00 0.00 3.72
337 338 0.388520 GAAAAAGGGGCGCATGTGTC 60.389 55.000 10.83 4.97 0.00 3.67
338 339 1.815817 AAAAAGGGGCGCATGTGTCC 61.816 55.000 21.94 21.94 0.00 4.02
339 340 4.740822 AAGGGGCGCATGTGTCCC 62.741 66.667 36.93 36.93 39.67 4.46
358 359 3.777910 GACGGGCGGGCTAGGAAA 61.778 66.667 0.26 0.00 0.00 3.13
359 360 3.735037 GACGGGCGGGCTAGGAAAG 62.735 68.421 0.26 0.00 0.00 2.62
360 361 4.547367 CGGGCGGGCTAGGAAAGG 62.547 72.222 0.26 0.00 0.00 3.11
361 362 3.087906 GGGCGGGCTAGGAAAGGA 61.088 66.667 0.26 0.00 0.00 3.36
362 363 2.189784 GGCGGGCTAGGAAAGGAC 59.810 66.667 0.00 0.00 0.00 3.85
363 364 2.666098 GGCGGGCTAGGAAAGGACA 61.666 63.158 0.00 0.00 0.00 4.02
364 365 1.527370 GCGGGCTAGGAAAGGACAT 59.473 57.895 0.00 0.00 0.00 3.06
365 366 0.815615 GCGGGCTAGGAAAGGACATG 60.816 60.000 0.00 0.00 0.00 3.21
366 367 0.179045 CGGGCTAGGAAAGGACATGG 60.179 60.000 0.00 0.00 0.00 3.66
367 368 0.183731 GGGCTAGGAAAGGACATGGG 59.816 60.000 0.00 0.00 0.00 4.00
368 369 0.466372 GGCTAGGAAAGGACATGGGC 60.466 60.000 0.00 0.00 0.00 5.36
369 370 0.255890 GCTAGGAAAGGACATGGGCA 59.744 55.000 0.00 0.00 0.00 5.36
370 371 2.019156 GCTAGGAAAGGACATGGGCAC 61.019 57.143 0.00 0.00 0.00 5.01
371 372 1.281867 CTAGGAAAGGACATGGGCACA 59.718 52.381 0.00 0.00 0.00 4.57
372 373 0.251341 AGGAAAGGACATGGGCACAC 60.251 55.000 0.00 0.00 0.00 3.82
373 374 1.586154 GGAAAGGACATGGGCACACG 61.586 60.000 0.00 0.00 0.00 4.49
374 375 2.200170 GAAAGGACATGGGCACACGC 62.200 60.000 0.00 0.00 37.44 5.34
400 401 3.764049 GTCCGCGCGTGTCTGTTC 61.764 66.667 29.95 7.06 0.00 3.18
406 407 3.712881 GCGTGTCTGTTCCGCCAC 61.713 66.667 0.00 0.00 41.50 5.01
407 408 2.279851 CGTGTCTGTTCCGCCACA 60.280 61.111 0.00 0.00 0.00 4.17
408 409 1.885388 CGTGTCTGTTCCGCCACAA 60.885 57.895 0.00 0.00 0.00 3.33
409 410 1.433053 CGTGTCTGTTCCGCCACAAA 61.433 55.000 0.00 0.00 0.00 2.83
410 411 0.951558 GTGTCTGTTCCGCCACAAAT 59.048 50.000 0.00 0.00 0.00 2.32
411 412 2.147958 GTGTCTGTTCCGCCACAAATA 58.852 47.619 0.00 0.00 0.00 1.40
412 413 2.095919 GTGTCTGTTCCGCCACAAATAC 60.096 50.000 0.00 0.00 0.00 1.89
413 414 1.127951 GTCTGTTCCGCCACAAATACG 59.872 52.381 0.00 0.00 0.00 3.06
414 415 1.001068 TCTGTTCCGCCACAAATACGA 59.999 47.619 0.00 0.00 0.00 3.43
415 416 2.006888 CTGTTCCGCCACAAATACGAT 58.993 47.619 0.00 0.00 0.00 3.73
416 417 2.004017 TGTTCCGCCACAAATACGATC 58.996 47.619 0.00 0.00 0.00 3.69
417 418 1.329599 GTTCCGCCACAAATACGATCC 59.670 52.381 0.00 0.00 0.00 3.36
418 419 0.537653 TCCGCCACAAATACGATCCA 59.462 50.000 0.00 0.00 0.00 3.41
419 420 1.066071 TCCGCCACAAATACGATCCAA 60.066 47.619 0.00 0.00 0.00 3.53
420 421 1.740585 CCGCCACAAATACGATCCAAA 59.259 47.619 0.00 0.00 0.00 3.28
421 422 2.223249 CCGCCACAAATACGATCCAAAG 60.223 50.000 0.00 0.00 0.00 2.77
422 423 2.418628 CGCCACAAATACGATCCAAAGT 59.581 45.455 0.00 0.00 0.00 2.66
423 424 3.119990 CGCCACAAATACGATCCAAAGTT 60.120 43.478 0.00 0.00 0.00 2.66
424 425 4.165779 GCCACAAATACGATCCAAAGTTG 58.834 43.478 0.00 0.00 0.00 3.16
435 436 1.180029 CCAAAGTTGGGCTGAGATGG 58.820 55.000 1.83 0.00 44.70 3.51
436 437 1.272092 CCAAAGTTGGGCTGAGATGGA 60.272 52.381 1.83 0.00 44.70 3.41
437 438 2.622452 CCAAAGTTGGGCTGAGATGGAT 60.622 50.000 1.83 0.00 44.70 3.41
438 439 2.686915 CAAAGTTGGGCTGAGATGGATC 59.313 50.000 0.00 0.00 0.00 3.36
439 440 0.467384 AGTTGGGCTGAGATGGATCG 59.533 55.000 0.00 0.00 0.00 3.69
440 441 0.465705 GTTGGGCTGAGATGGATCGA 59.534 55.000 0.00 0.00 0.00 3.59
441 442 1.134401 GTTGGGCTGAGATGGATCGAA 60.134 52.381 0.00 0.00 0.00 3.71
442 443 1.203237 TGGGCTGAGATGGATCGAAA 58.797 50.000 0.00 0.00 0.00 3.46
443 444 1.139654 TGGGCTGAGATGGATCGAAAG 59.860 52.381 0.00 0.00 0.00 2.62
444 445 1.224965 GGCTGAGATGGATCGAAAGC 58.775 55.000 0.00 0.00 33.54 3.51
445 446 0.857935 GCTGAGATGGATCGAAAGCG 59.142 55.000 0.00 0.00 39.35 4.68
446 447 1.495878 CTGAGATGGATCGAAAGCGG 58.504 55.000 0.00 0.00 38.28 5.52
447 448 1.067669 CTGAGATGGATCGAAAGCGGA 59.932 52.381 0.00 0.00 38.28 5.54
448 449 1.202417 TGAGATGGATCGAAAGCGGAC 60.202 52.381 0.00 0.00 38.28 4.79
449 450 0.105039 AGATGGATCGAAAGCGGACC 59.895 55.000 0.00 0.00 38.28 4.46
450 451 0.179084 GATGGATCGAAAGCGGACCA 60.179 55.000 0.00 0.00 42.98 4.02
451 452 0.251916 ATGGATCGAAAGCGGACCAA 59.748 50.000 0.00 0.00 42.47 3.67
452 453 0.035598 TGGATCGAAAGCGGACCAAA 59.964 50.000 0.00 0.00 38.98 3.28
453 454 1.161843 GGATCGAAAGCGGACCAAAA 58.838 50.000 0.00 0.00 38.28 2.44
454 455 1.135774 GGATCGAAAGCGGACCAAAAC 60.136 52.381 0.00 0.00 38.28 2.43
455 456 0.515564 ATCGAAAGCGGACCAAAACG 59.484 50.000 0.00 0.00 38.28 3.60
460 461 4.676586 GCGGACCAAAACGCGTGG 62.677 66.667 14.98 13.37 46.58 4.94
461 462 4.676586 CGGACCAAAACGCGTGGC 62.677 66.667 14.98 0.68 40.02 5.01
462 463 3.284449 GGACCAAAACGCGTGGCT 61.284 61.111 14.98 0.00 40.02 4.75
463 464 1.962306 GGACCAAAACGCGTGGCTA 60.962 57.895 14.98 0.00 40.02 3.93
464 465 1.508808 GGACCAAAACGCGTGGCTAA 61.509 55.000 14.98 0.00 40.02 3.09
465 466 0.308376 GACCAAAACGCGTGGCTAAA 59.692 50.000 14.98 0.00 40.02 1.85
466 467 0.739561 ACCAAAACGCGTGGCTAAAA 59.260 45.000 14.98 0.00 40.02 1.52
467 468 1.125270 CCAAAACGCGTGGCTAAAAC 58.875 50.000 14.98 0.00 0.00 2.43
468 469 1.534175 CCAAAACGCGTGGCTAAAACA 60.534 47.619 14.98 0.00 0.00 2.83
469 470 1.778591 CAAAACGCGTGGCTAAAACAG 59.221 47.619 14.98 0.00 0.00 3.16
470 471 1.301423 AAACGCGTGGCTAAAACAGA 58.699 45.000 14.98 0.00 0.00 3.41
471 472 0.865769 AACGCGTGGCTAAAACAGAG 59.134 50.000 14.98 0.00 0.00 3.35
472 473 0.249741 ACGCGTGGCTAAAACAGAGT 60.250 50.000 12.93 0.00 0.00 3.24
473 474 1.000060 ACGCGTGGCTAAAACAGAGTA 60.000 47.619 12.93 0.00 0.00 2.59
474 475 2.268298 CGCGTGGCTAAAACAGAGTAT 58.732 47.619 0.00 0.00 0.00 2.12
475 476 3.119388 ACGCGTGGCTAAAACAGAGTATA 60.119 43.478 12.93 0.00 0.00 1.47
476 477 3.486108 CGCGTGGCTAAAACAGAGTATAG 59.514 47.826 0.00 0.00 0.00 1.31
477 478 4.430908 GCGTGGCTAAAACAGAGTATAGT 58.569 43.478 0.00 0.00 0.00 2.12
478 479 5.585390 GCGTGGCTAAAACAGAGTATAGTA 58.415 41.667 0.00 0.00 0.00 1.82
479 480 6.214399 GCGTGGCTAAAACAGAGTATAGTAT 58.786 40.000 0.00 0.00 0.00 2.12
480 481 7.365741 GCGTGGCTAAAACAGAGTATAGTATA 58.634 38.462 0.00 0.00 0.00 1.47
481 482 7.537991 GCGTGGCTAAAACAGAGTATAGTATAG 59.462 40.741 0.00 0.00 0.00 1.31
482 483 8.781196 CGTGGCTAAAACAGAGTATAGTATAGA 58.219 37.037 0.00 0.00 0.00 1.98
492 493 9.610705 ACAGAGTATAGTATAGAAGAACAACGA 57.389 33.333 0.00 0.00 0.00 3.85
499 500 9.953697 ATAGTATAGAAGAACAACGAAGATGTC 57.046 33.333 0.00 0.00 44.60 3.06
500 501 8.057536 AGTATAGAAGAACAACGAAGATGTCT 57.942 34.615 0.00 0.00 44.60 3.41
501 502 8.524487 AGTATAGAAGAACAACGAAGATGTCTT 58.476 33.333 0.00 0.00 44.60 3.01
502 503 9.141400 GTATAGAAGAACAACGAAGATGTCTTT 57.859 33.333 0.00 0.00 44.60 2.52
503 504 6.532365 AGAAGAACAACGAAGATGTCTTTC 57.468 37.500 0.00 0.00 44.60 2.62
504 505 4.974103 AGAACAACGAAGATGTCTTTCG 57.026 40.909 5.90 5.90 44.60 3.46
505 506 3.184581 AGAACAACGAAGATGTCTTTCGC 59.815 43.478 7.23 0.00 44.60 4.70
506 507 2.755650 ACAACGAAGATGTCTTTCGCT 58.244 42.857 7.23 0.00 40.21 4.93
517 518 2.362397 TGTCTTTCGCTTCTGAGTCAGT 59.638 45.455 19.53 0.00 32.61 3.41
530 531 2.290134 TGAGTCAGTGTAGCGACTACCT 60.290 50.000 12.45 7.80 42.48 3.08
950 956 2.203972 TAACGCTCGTTCACCTCCCG 62.204 60.000 11.14 0.00 39.31 5.14
1191 1199 1.154016 CGACATCGAGTTCCGCACT 60.154 57.895 0.00 0.00 43.02 4.40
1231 1239 3.119096 GCCTCTGTCGTTTCCGCC 61.119 66.667 0.00 0.00 0.00 6.13
1340 1361 2.096819 GCCTACCAAATTTGCGATCGAA 59.903 45.455 21.57 5.06 0.00 3.71
1467 1500 2.635443 CCCGTTGGCCGCATTTCTT 61.635 57.895 0.00 0.00 34.38 2.52
1652 1851 0.944386 AACACGCAACAACTAGGCTG 59.056 50.000 0.00 0.00 0.00 4.85
1701 1901 4.793028 GCCTTTAGTCTCAAACAAGTTGGC 60.793 45.833 7.96 0.00 37.85 4.52
1841 2041 6.633500 ATGAGAGGTCTTCTTCTATCTTCG 57.367 41.667 0.00 0.00 35.87 3.79
1896 2101 9.750125 GCATTTGTTATCCTTAATTCCCTTTAG 57.250 33.333 0.00 0.00 0.00 1.85
1928 2133 8.311109 ACACTGTTTATGTTTCCTTGTTCTTTT 58.689 29.630 0.00 0.00 0.00 2.27
2503 2716 3.825160 GACGGGAGCAGCAACACCA 62.825 63.158 0.00 0.00 0.00 4.17
2736 2949 3.710722 CCTCCCAGAAGCCACGCT 61.711 66.667 0.00 0.00 42.56 5.07
3518 3734 3.843422 TGCCAAAAAGAGGGAAAGATCA 58.157 40.909 0.00 0.00 0.00 2.92
3786 4002 1.952296 GAATCGGATTCTTGCCAGCAT 59.048 47.619 20.70 0.00 36.37 3.79
3837 4053 4.938226 AGTTATGCACTCAGGCTAACTTTC 59.062 41.667 0.00 0.00 35.84 2.62
3894 4110 4.706476 TGCCTTTCAAGAACCTATTGATGG 59.294 41.667 0.00 0.00 36.60 3.51
3895 4111 4.440663 GCCTTTCAAGAACCTATTGATGGC 60.441 45.833 13.50 13.50 43.12 4.40
3896 4112 4.952335 CCTTTCAAGAACCTATTGATGGCT 59.048 41.667 0.00 0.00 36.60 4.75
3897 4113 5.163581 CCTTTCAAGAACCTATTGATGGCTG 60.164 44.000 0.00 0.00 36.60 4.85
3899 4115 5.378230 TCAAGAACCTATTGATGGCTGAT 57.622 39.130 0.00 0.00 31.86 2.90
3901 4117 3.484407 AGAACCTATTGATGGCTGATGC 58.516 45.455 0.00 0.00 38.76 3.91
3902 4118 3.117776 AGAACCTATTGATGGCTGATGCA 60.118 43.478 0.00 0.00 41.91 3.96
3903 4119 2.579873 ACCTATTGATGGCTGATGCAC 58.420 47.619 0.00 0.00 41.91 4.57
3904 4120 2.092267 ACCTATTGATGGCTGATGCACA 60.092 45.455 0.00 0.00 41.91 4.57
3905 4121 2.953648 CCTATTGATGGCTGATGCACAA 59.046 45.455 0.00 0.00 41.91 3.33
3906 4122 2.953466 ATTGATGGCTGATGCACAAC 57.047 45.000 0.00 0.00 41.91 3.32
3907 4123 0.522626 TTGATGGCTGATGCACAACG 59.477 50.000 0.00 0.00 41.91 4.10
3918 4134 4.152526 TGATGCACAACGTTTTTATACGC 58.847 39.130 0.00 0.00 45.06 4.42
3931 4147 8.617809 ACGTTTTTATACGCCTATCATGAAAAT 58.382 29.630 0.00 0.00 45.06 1.82
4277 4494 4.042809 TCATGTTCCTTAGAGGGCTTTCAA 59.957 41.667 0.00 0.00 35.59 2.69
4334 4551 7.668052 TGTTTGGGCTTTGTAATAGTATGAGTT 59.332 33.333 0.00 0.00 0.00 3.01
4454 4671 4.597404 TGTTGCTGCAATTCCAACAATA 57.403 36.364 19.11 0.00 43.92 1.90
4630 4847 4.698575 TGTGTAATAGATGCGCCATACAA 58.301 39.130 4.18 0.00 0.00 2.41
4728 4945 5.352569 AGTTATGAGTTGTGAAGCATGTAGC 59.647 40.000 0.00 0.00 46.19 3.58
4991 5208 3.679389 ACATGACCCTTTGTGACATCTC 58.321 45.455 0.00 0.00 0.00 2.75
5309 5526 5.669164 TTATGTATGCTGCGATATGGGTA 57.331 39.130 0.00 0.00 0.00 3.69
5333 5550 9.423427 GTATAGAACGCTCACATACTATTATCG 57.577 37.037 0.00 0.00 0.00 2.92
5647 5864 3.146847 TCCTATGCATCGTGATCGTAGT 58.853 45.455 0.19 0.00 38.33 2.73
5810 6028 3.972133 TCATGTGCATCCTTCTTCCATT 58.028 40.909 0.00 0.00 0.00 3.16
5905 6123 2.093869 TGTCACGGGTTGTAGATTAGCC 60.094 50.000 0.00 0.00 0.00 3.93
5999 6217 8.660373 CAAAGGAAATAGTTGTACAGATCAGAC 58.340 37.037 0.00 0.00 0.00 3.51
6001 6219 5.232414 GGAAATAGTTGTACAGATCAGACGC 59.768 44.000 0.00 0.00 0.00 5.19
6085 6305 1.405105 CACACTGTGTTCCCCACTTTG 59.595 52.381 11.40 0.00 44.81 2.77
6095 6316 1.530013 CCCCACTTTGCAGCTTGGAG 61.530 60.000 10.35 0.00 0.00 3.86
6110 6331 0.322975 TGGAGTGCTCTTCAGCCTTC 59.677 55.000 0.00 0.00 46.26 3.46
6143 6365 1.004277 CGTCCTCGCATTATCTCCGC 61.004 60.000 0.00 0.00 0.00 5.54
6151 6373 0.179020 CATTATCTCCGCCCTTGCCA 60.179 55.000 0.00 0.00 0.00 4.92
6169 6441 5.840243 TGCCAAAATGATGACAATCTAGG 57.160 39.130 0.00 0.00 33.61 3.02
6230 6965 6.009547 CGAATACGAAAGGAACTACCTACGG 61.010 48.000 15.11 0.00 44.87 4.02
6250 7713 0.609957 TTCGCCCTCCTTGTCGACTA 60.610 55.000 17.92 8.49 0.00 2.59
6388 7851 2.323959 CTTCTTCACTGTGAGCGACTC 58.676 52.381 10.77 0.00 0.00 3.36
6403 7867 1.536922 CGACTCAAGGACCCATCATCG 60.537 57.143 0.00 0.00 0.00 3.84
6414 7878 2.439135 ACCCATCATCGTCCATGAATGA 59.561 45.455 0.00 0.00 45.06 2.57
6464 7929 6.255020 GTGCGGAGTCGAAATCTTAATCTTAA 59.745 38.462 0.00 0.00 39.00 1.85
6524 7989 7.396540 AAAGAAGTTGTGAGAGATTTGTTGT 57.603 32.000 0.00 0.00 0.00 3.32
6533 7998 8.908786 TGTGAGAGATTTGTTGTTAAGAGATT 57.091 30.769 0.00 0.00 0.00 2.40
6587 8064 9.658799 AATAAATATCTATTCTCGTCCACCATG 57.341 33.333 0.00 0.00 0.00 3.66
6602 8079 6.093495 CGTCCACCATGTGTATTTTACAGAAT 59.907 38.462 0.00 0.00 39.77 2.40
6605 8085 9.521841 TCCACCATGTGTATTTTACAGAATAAA 57.478 29.630 0.00 0.00 39.77 1.40
6651 8131 4.277174 CCAGCACTCTATCAGTAAGTCGAT 59.723 45.833 0.00 0.00 32.21 3.59
6652 8132 5.470437 CCAGCACTCTATCAGTAAGTCGATA 59.530 44.000 0.00 0.00 32.21 2.92
6657 8137 8.129840 GCACTCTATCAGTAAGTCGATAAGAAA 58.870 37.037 0.00 0.00 32.21 2.52
6662 8142 9.751542 CTATCAGTAAGTCGATAAGAAAATGGT 57.248 33.333 0.00 0.00 0.00 3.55
6664 8144 8.475331 TCAGTAAGTCGATAAGAAAATGGTTC 57.525 34.615 0.00 0.00 0.00 3.62
6665 8145 7.274904 TCAGTAAGTCGATAAGAAAATGGTTCG 59.725 37.037 0.00 0.00 0.00 3.95
6666 8146 5.796350 AAGTCGATAAGAAAATGGTTCGG 57.204 39.130 0.00 0.00 0.00 4.30
6667 8147 5.080969 AGTCGATAAGAAAATGGTTCGGA 57.919 39.130 0.00 0.00 0.00 4.55
6668 8148 4.868734 AGTCGATAAGAAAATGGTTCGGAC 59.131 41.667 0.00 0.00 0.00 4.79
6669 8149 4.628333 GTCGATAAGAAAATGGTTCGGACA 59.372 41.667 0.00 0.00 0.00 4.02
6670 8150 5.293569 GTCGATAAGAAAATGGTTCGGACAT 59.706 40.000 0.00 0.00 0.00 3.06
6671 8151 5.878116 TCGATAAGAAAATGGTTCGGACATT 59.122 36.000 0.00 0.00 40.07 2.71
6694 8174 4.920640 TTTTTCTCTCTCTCTGTGTCGT 57.079 40.909 0.00 0.00 0.00 4.34
6695 8175 3.906014 TTTCTCTCTCTCTGTGTCGTG 57.094 47.619 0.00 0.00 0.00 4.35
6696 8176 1.160989 TCTCTCTCTCTGTGTCGTGC 58.839 55.000 0.00 0.00 0.00 5.34
6697 8177 0.877743 CTCTCTCTCTGTGTCGTGCA 59.122 55.000 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.912371 GAGCTCAACCCGGCTTTTCG 61.912 60.000 9.40 0.00 39.05 3.46
10 11 0.889186 TGAGCTCAACCCGGCTTTTC 60.889 55.000 15.67 0.00 39.05 2.29
11 12 0.467290 TTGAGCTCAACCCGGCTTTT 60.467 50.000 25.16 0.00 39.05 2.27
12 13 0.467290 TTTGAGCTCAACCCGGCTTT 60.467 50.000 28.46 0.00 39.05 3.51
13 14 0.251341 ATTTGAGCTCAACCCGGCTT 60.251 50.000 28.46 5.28 39.05 4.35
14 15 0.678048 GATTTGAGCTCAACCCGGCT 60.678 55.000 28.46 9.25 41.88 5.52
15 16 1.657751 GGATTTGAGCTCAACCCGGC 61.658 60.000 28.46 14.92 35.28 6.13
16 17 1.369091 CGGATTTGAGCTCAACCCGG 61.369 60.000 37.31 27.19 35.28 5.73
17 18 0.391130 TCGGATTTGAGCTCAACCCG 60.391 55.000 38.22 38.22 35.28 5.28
18 19 1.087501 GTCGGATTTGAGCTCAACCC 58.912 55.000 28.46 27.02 35.28 4.11
19 20 1.087501 GGTCGGATTTGAGCTCAACC 58.912 55.000 28.46 24.16 35.28 3.77
20 21 0.721718 CGGTCGGATTTGAGCTCAAC 59.278 55.000 28.46 17.60 35.28 3.18
21 22 0.391130 CCGGTCGGATTTGAGCTCAA 60.391 55.000 25.16 25.16 37.50 3.02
22 23 1.218047 CCGGTCGGATTTGAGCTCA 59.782 57.895 13.74 13.74 37.50 4.26
23 24 1.515954 TCCGGTCGGATTTGAGCTC 59.484 57.895 6.82 6.82 39.76 4.09
24 25 3.708210 TCCGGTCGGATTTGAGCT 58.292 55.556 8.14 0.00 39.76 4.09
40 41 1.806623 CGACCGGATTTGGAGTGGATC 60.807 57.143 9.46 0.00 0.00 3.36
41 42 0.178068 CGACCGGATTTGGAGTGGAT 59.822 55.000 9.46 0.00 0.00 3.41
42 43 1.594833 CGACCGGATTTGGAGTGGA 59.405 57.895 9.46 0.00 0.00 4.02
43 44 2.106683 GCGACCGGATTTGGAGTGG 61.107 63.158 9.46 0.00 0.00 4.00
44 45 2.106683 GGCGACCGGATTTGGAGTG 61.107 63.158 9.46 0.00 0.00 3.51
45 46 2.267961 GGCGACCGGATTTGGAGT 59.732 61.111 9.46 0.00 0.00 3.85
46 47 1.815421 CTGGCGACCGGATTTGGAG 60.815 63.158 9.46 0.00 29.82 3.86
47 48 2.267642 CTGGCGACCGGATTTGGA 59.732 61.111 9.46 0.00 29.82 3.53
48 49 2.824041 CCTGGCGACCGGATTTGG 60.824 66.667 9.46 0.00 29.82 3.28
49 50 2.046314 ACCTGGCGACCGGATTTG 60.046 61.111 9.46 0.00 29.82 2.32
50 51 2.046314 CACCTGGCGACCGGATTT 60.046 61.111 9.46 0.00 29.82 2.17
51 52 4.778143 GCACCTGGCGACCGGATT 62.778 66.667 9.46 0.00 29.82 3.01
60 61 2.334946 TGATTTCAGCGCACCTGGC 61.335 57.895 11.47 0.00 42.05 4.85
61 62 1.503542 GTGATTTCAGCGCACCTGG 59.496 57.895 11.47 0.00 42.05 4.45
62 63 1.133253 CGTGATTTCAGCGCACCTG 59.867 57.895 11.47 0.00 43.17 4.00
63 64 2.680913 GCGTGATTTCAGCGCACCT 61.681 57.895 11.47 0.00 41.97 4.00
64 65 2.202349 GCGTGATTTCAGCGCACC 60.202 61.111 11.47 0.00 41.97 5.01
69 70 1.014044 TCCAGTCGCGTGATTTCAGC 61.014 55.000 5.77 0.00 0.00 4.26
70 71 0.994995 CTCCAGTCGCGTGATTTCAG 59.005 55.000 5.77 0.00 0.00 3.02
71 72 0.317160 ACTCCAGTCGCGTGATTTCA 59.683 50.000 5.77 0.00 0.00 2.69
72 73 1.126846 CAACTCCAGTCGCGTGATTTC 59.873 52.381 5.77 0.00 0.00 2.17
73 74 1.148310 CAACTCCAGTCGCGTGATTT 58.852 50.000 5.77 0.00 0.00 2.17
74 75 0.670546 CCAACTCCAGTCGCGTGATT 60.671 55.000 5.77 0.00 0.00 2.57
75 76 1.079819 CCAACTCCAGTCGCGTGAT 60.080 57.895 5.77 0.00 0.00 3.06
76 77 2.197605 TCCAACTCCAGTCGCGTGA 61.198 57.895 5.77 0.00 0.00 4.35
77 78 2.022129 GTCCAACTCCAGTCGCGTG 61.022 63.158 5.77 0.00 0.00 5.34
78 79 2.338984 GTCCAACTCCAGTCGCGT 59.661 61.111 5.77 0.00 0.00 6.01
79 80 1.734477 CTGTCCAACTCCAGTCGCG 60.734 63.158 0.00 0.00 0.00 5.87
80 81 2.029844 GCTGTCCAACTCCAGTCGC 61.030 63.158 0.00 0.00 0.00 5.19
81 82 1.374758 GGCTGTCCAACTCCAGTCG 60.375 63.158 0.00 0.00 0.00 4.18
82 83 0.036858 GAGGCTGTCCAACTCCAGTC 60.037 60.000 0.00 0.00 33.50 3.51
83 84 0.764369 TGAGGCTGTCCAACTCCAGT 60.764 55.000 0.00 0.00 33.74 4.00
84 85 0.036577 CTGAGGCTGTCCAACTCCAG 60.037 60.000 0.00 0.00 33.74 3.86
85 86 0.471780 TCTGAGGCTGTCCAACTCCA 60.472 55.000 0.00 0.00 33.74 3.86
86 87 0.036858 GTCTGAGGCTGTCCAACTCC 60.037 60.000 0.00 0.00 33.74 3.85
87 88 0.681733 TGTCTGAGGCTGTCCAACTC 59.318 55.000 0.00 0.00 33.74 3.01
88 89 1.277557 GATGTCTGAGGCTGTCCAACT 59.722 52.381 0.00 0.00 33.74 3.16
89 90 1.002430 TGATGTCTGAGGCTGTCCAAC 59.998 52.381 0.00 0.00 33.74 3.77
90 91 1.351076 TGATGTCTGAGGCTGTCCAA 58.649 50.000 0.00 0.00 33.74 3.53
91 92 1.277273 CTTGATGTCTGAGGCTGTCCA 59.723 52.381 0.00 0.00 33.74 4.02
92 93 1.406614 CCTTGATGTCTGAGGCTGTCC 60.407 57.143 0.00 0.00 0.00 4.02
93 94 1.552337 TCCTTGATGTCTGAGGCTGTC 59.448 52.381 0.00 0.00 0.00 3.51
94 95 1.649321 TCCTTGATGTCTGAGGCTGT 58.351 50.000 0.00 0.00 0.00 4.40
95 96 2.746362 GTTTCCTTGATGTCTGAGGCTG 59.254 50.000 0.00 0.00 0.00 4.85
96 97 2.613977 CGTTTCCTTGATGTCTGAGGCT 60.614 50.000 0.00 0.00 0.00 4.58
97 98 1.734465 CGTTTCCTTGATGTCTGAGGC 59.266 52.381 0.00 0.00 0.00 4.70
98 99 2.350522 CCGTTTCCTTGATGTCTGAGG 58.649 52.381 0.00 0.00 0.00 3.86
99 100 2.350522 CCCGTTTCCTTGATGTCTGAG 58.649 52.381 0.00 0.00 0.00 3.35
100 101 1.003118 CCCCGTTTCCTTGATGTCTGA 59.997 52.381 0.00 0.00 0.00 3.27
101 102 1.453155 CCCCGTTTCCTTGATGTCTG 58.547 55.000 0.00 0.00 0.00 3.51
102 103 0.322546 GCCCCGTTTCCTTGATGTCT 60.323 55.000 0.00 0.00 0.00 3.41
103 104 0.322546 AGCCCCGTTTCCTTGATGTC 60.323 55.000 0.00 0.00 0.00 3.06
104 105 0.609131 CAGCCCCGTTTCCTTGATGT 60.609 55.000 0.00 0.00 0.00 3.06
105 106 1.937546 GCAGCCCCGTTTCCTTGATG 61.938 60.000 0.00 0.00 0.00 3.07
106 107 1.678970 GCAGCCCCGTTTCCTTGAT 60.679 57.895 0.00 0.00 0.00 2.57
107 108 2.282180 GCAGCCCCGTTTCCTTGA 60.282 61.111 0.00 0.00 0.00 3.02
108 109 3.737172 CGCAGCCCCGTTTCCTTG 61.737 66.667 0.00 0.00 0.00 3.61
109 110 2.969300 TTTCGCAGCCCCGTTTCCTT 62.969 55.000 0.00 0.00 0.00 3.36
110 111 3.485346 TTTCGCAGCCCCGTTTCCT 62.485 57.895 0.00 0.00 0.00 3.36
111 112 2.978018 CTTTCGCAGCCCCGTTTCC 61.978 63.158 0.00 0.00 0.00 3.13
112 113 2.561373 CTTTCGCAGCCCCGTTTC 59.439 61.111 0.00 0.00 0.00 2.78
113 114 2.983592 CCTTTCGCAGCCCCGTTT 60.984 61.111 0.00 0.00 0.00 3.60
117 118 4.803908 CTCCCCTTTCGCAGCCCC 62.804 72.222 0.00 0.00 0.00 5.80
118 119 4.803908 CCTCCCCTTTCGCAGCCC 62.804 72.222 0.00 0.00 0.00 5.19
119 120 4.803908 CCCTCCCCTTTCGCAGCC 62.804 72.222 0.00 0.00 0.00 4.85
120 121 3.717294 TCCCTCCCCTTTCGCAGC 61.717 66.667 0.00 0.00 0.00 5.25
121 122 2.269241 GTCCCTCCCCTTTCGCAG 59.731 66.667 0.00 0.00 0.00 5.18
122 123 3.702048 CGTCCCTCCCCTTTCGCA 61.702 66.667 0.00 0.00 0.00 5.10
123 124 4.468689 CCGTCCCTCCCCTTTCGC 62.469 72.222 0.00 0.00 0.00 4.70
124 125 3.782443 CCCGTCCCTCCCCTTTCG 61.782 72.222 0.00 0.00 0.00 3.46
125 126 4.111053 GCCCGTCCCTCCCCTTTC 62.111 72.222 0.00 0.00 0.00 2.62
126 127 4.677151 AGCCCGTCCCTCCCCTTT 62.677 66.667 0.00 0.00 0.00 3.11
127 128 4.677151 AAGCCCGTCCCTCCCCTT 62.677 66.667 0.00 0.00 0.00 3.95
142 143 2.943345 GCACCACACAGACGCGAAG 61.943 63.158 15.93 4.09 0.00 3.79
143 144 2.964925 GCACCACACAGACGCGAA 60.965 61.111 15.93 0.00 0.00 4.70
144 145 3.911698 AGCACCACACAGACGCGA 61.912 61.111 15.93 0.00 0.00 5.87
145 146 3.705638 CAGCACCACACAGACGCG 61.706 66.667 3.53 3.53 0.00 6.01
146 147 1.436195 TTTCAGCACCACACAGACGC 61.436 55.000 0.00 0.00 0.00 5.19
147 148 1.195448 GATTTCAGCACCACACAGACG 59.805 52.381 0.00 0.00 0.00 4.18
148 149 2.221169 TGATTTCAGCACCACACAGAC 58.779 47.619 0.00 0.00 0.00 3.51
149 150 2.497138 CTGATTTCAGCACCACACAGA 58.503 47.619 0.00 0.00 37.15 3.41
150 151 1.538512 CCTGATTTCAGCACCACACAG 59.461 52.381 1.90 0.00 42.47 3.66
151 152 1.608055 CCTGATTTCAGCACCACACA 58.392 50.000 1.90 0.00 42.47 3.72
152 153 0.242017 GCCTGATTTCAGCACCACAC 59.758 55.000 1.90 0.00 42.47 3.82
153 154 1.236616 CGCCTGATTTCAGCACCACA 61.237 55.000 1.90 0.00 42.47 4.17
154 155 1.503542 CGCCTGATTTCAGCACCAC 59.496 57.895 1.90 0.00 42.47 4.16
155 156 1.675310 CCGCCTGATTTCAGCACCA 60.675 57.895 1.90 0.00 42.47 4.17
156 157 3.056313 GCCGCCTGATTTCAGCACC 62.056 63.158 1.90 0.00 42.47 5.01
157 158 2.042831 AGCCGCCTGATTTCAGCAC 61.043 57.895 1.90 0.00 42.47 4.40
158 159 2.042259 CAGCCGCCTGATTTCAGCA 61.042 57.895 1.90 0.00 41.77 4.41
159 160 2.768492 CCAGCCGCCTGATTTCAGC 61.768 63.158 0.00 0.00 41.77 4.26
160 161 1.078214 TCCAGCCGCCTGATTTCAG 60.078 57.895 0.00 0.39 41.77 3.02
161 162 1.078214 CTCCAGCCGCCTGATTTCA 60.078 57.895 0.00 0.00 41.77 2.69
162 163 0.678048 AACTCCAGCCGCCTGATTTC 60.678 55.000 0.00 0.00 41.77 2.17
163 164 0.962356 CAACTCCAGCCGCCTGATTT 60.962 55.000 0.00 0.00 41.77 2.17
164 165 1.377725 CAACTCCAGCCGCCTGATT 60.378 57.895 0.00 0.00 41.77 2.57
165 166 2.270205 CAACTCCAGCCGCCTGAT 59.730 61.111 0.00 0.00 41.77 2.90
166 167 4.020617 CCAACTCCAGCCGCCTGA 62.021 66.667 0.00 0.00 41.77 3.86
167 168 4.020617 TCCAACTCCAGCCGCCTG 62.021 66.667 0.00 0.00 38.85 4.85
168 169 4.021925 GTCCAACTCCAGCCGCCT 62.022 66.667 0.00 0.00 0.00 5.52
169 170 4.329545 TGTCCAACTCCAGCCGCC 62.330 66.667 0.00 0.00 0.00 6.13
170 171 2.743928 CTGTCCAACTCCAGCCGC 60.744 66.667 0.00 0.00 0.00 6.53
171 172 2.743928 GCTGTCCAACTCCAGCCG 60.744 66.667 0.24 0.00 46.55 5.52
174 175 2.352805 GGGGCTGTCCAACTCCAG 59.647 66.667 0.00 0.00 37.22 3.86
175 176 3.636231 CGGGGCTGTCCAACTCCA 61.636 66.667 0.00 0.00 37.22 3.86
176 177 4.410400 CCGGGGCTGTCCAACTCC 62.410 72.222 0.00 0.00 37.22 3.85
177 178 4.410400 CCCGGGGCTGTCCAACTC 62.410 72.222 14.71 0.00 37.22 3.01
188 189 2.052104 GTTTCCTTGATGCCCGGGG 61.052 63.158 25.28 9.31 0.00 5.73
189 190 2.406616 CGTTTCCTTGATGCCCGGG 61.407 63.158 19.09 19.09 0.00 5.73
190 191 0.958382 TTCGTTTCCTTGATGCCCGG 60.958 55.000 0.00 0.00 0.00 5.73
191 192 0.447801 CTTCGTTTCCTTGATGCCCG 59.552 55.000 0.00 0.00 0.00 6.13
192 193 0.171231 GCTTCGTTTCCTTGATGCCC 59.829 55.000 0.00 0.00 31.24 5.36
193 194 1.135575 CAGCTTCGTTTCCTTGATGCC 60.136 52.381 0.00 0.00 36.30 4.40
194 195 1.730446 GCAGCTTCGTTTCCTTGATGC 60.730 52.381 0.00 0.00 36.00 3.91
195 196 1.464687 CGCAGCTTCGTTTCCTTGATG 60.465 52.381 0.00 0.00 0.00 3.07
196 197 0.798776 CGCAGCTTCGTTTCCTTGAT 59.201 50.000 0.00 0.00 0.00 2.57
197 198 0.249699 TCGCAGCTTCGTTTCCTTGA 60.250 50.000 5.50 0.00 0.00 3.02
198 199 0.586319 TTCGCAGCTTCGTTTCCTTG 59.414 50.000 5.50 0.00 0.00 3.61
199 200 1.264288 CTTTCGCAGCTTCGTTTCCTT 59.736 47.619 5.50 0.00 0.00 3.36
200 201 0.868406 CTTTCGCAGCTTCGTTTCCT 59.132 50.000 5.50 0.00 0.00 3.36
201 202 0.110192 CCTTTCGCAGCTTCGTTTCC 60.110 55.000 5.50 0.00 0.00 3.13
202 203 0.110192 CCCTTTCGCAGCTTCGTTTC 60.110 55.000 5.50 0.00 0.00 2.78
203 204 1.515521 CCCCTTTCGCAGCTTCGTTT 61.516 55.000 5.50 0.00 0.00 3.60
204 205 1.966451 CCCCTTTCGCAGCTTCGTT 60.966 57.895 5.50 0.00 0.00 3.85
205 206 2.358737 CCCCTTTCGCAGCTTCGT 60.359 61.111 5.50 0.00 0.00 3.85
206 207 2.047274 TCCCCTTTCGCAGCTTCG 60.047 61.111 0.00 0.00 0.00 3.79
207 208 0.742635 CTCTCCCCTTTCGCAGCTTC 60.743 60.000 0.00 0.00 0.00 3.86
208 209 1.298014 CTCTCCCCTTTCGCAGCTT 59.702 57.895 0.00 0.00 0.00 3.74
209 210 2.664081 CCTCTCCCCTTTCGCAGCT 61.664 63.158 0.00 0.00 0.00 4.24
210 211 2.124942 CCTCTCCCCTTTCGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
211 212 1.219393 GTCCTCTCCCCTTTCGCAG 59.781 63.158 0.00 0.00 0.00 5.18
212 213 2.646175 CGTCCTCTCCCCTTTCGCA 61.646 63.158 0.00 0.00 0.00 5.10
213 214 2.184579 CGTCCTCTCCCCTTTCGC 59.815 66.667 0.00 0.00 0.00 4.70
214 215 2.722201 CCCGTCCTCTCCCCTTTCG 61.722 68.421 0.00 0.00 0.00 3.46
215 216 3.032667 GCCCGTCCTCTCCCCTTTC 62.033 68.421 0.00 0.00 0.00 2.62
216 217 3.009714 GCCCGTCCTCTCCCCTTT 61.010 66.667 0.00 0.00 0.00 3.11
217 218 3.564347 AAGCCCGTCCTCTCCCCTT 62.564 63.158 0.00 0.00 0.00 3.95
218 219 3.986116 GAAGCCCGTCCTCTCCCCT 62.986 68.421 0.00 0.00 0.00 4.79
219 220 3.471806 GAAGCCCGTCCTCTCCCC 61.472 72.222 0.00 0.00 0.00 4.81
220 221 3.839432 CGAAGCCCGTCCTCTCCC 61.839 72.222 0.00 0.00 0.00 4.30
249 250 3.891586 TTCTCGTCCGTGCGCTGTC 62.892 63.158 9.73 0.00 0.00 3.51
250 251 2.964438 TTTTCTCGTCCGTGCGCTGT 62.964 55.000 9.73 0.00 0.00 4.40
251 252 1.827315 TTTTTCTCGTCCGTGCGCTG 61.827 55.000 9.73 0.08 0.00 5.18
252 253 0.949105 ATTTTTCTCGTCCGTGCGCT 60.949 50.000 9.73 0.00 0.00 5.92
253 254 0.789383 CATTTTTCTCGTCCGTGCGC 60.789 55.000 0.00 0.00 0.00 6.09
254 255 0.179225 CCATTTTTCTCGTCCGTGCG 60.179 55.000 0.00 0.00 0.00 5.34
255 256 0.454452 GCCATTTTTCTCGTCCGTGC 60.454 55.000 0.00 0.00 0.00 5.34
256 257 0.179225 CGCCATTTTTCTCGTCCGTG 60.179 55.000 0.00 0.00 0.00 4.94
257 258 1.296056 CCGCCATTTTTCTCGTCCGT 61.296 55.000 0.00 0.00 0.00 4.69
258 259 1.423845 CCGCCATTTTTCTCGTCCG 59.576 57.895 0.00 0.00 0.00 4.79
259 260 1.136774 GCCGCCATTTTTCTCGTCC 59.863 57.895 0.00 0.00 0.00 4.79
260 261 1.226018 CGCCGCCATTTTTCTCGTC 60.226 57.895 0.00 0.00 0.00 4.20
261 262 2.686816 CCGCCGCCATTTTTCTCGT 61.687 57.895 0.00 0.00 0.00 4.18
262 263 2.100216 CCGCCGCCATTTTTCTCG 59.900 61.111 0.00 0.00 0.00 4.04
263 264 2.202610 GCCGCCGCCATTTTTCTC 60.203 61.111 0.00 0.00 0.00 2.87
264 265 4.114997 CGCCGCCGCCATTTTTCT 62.115 61.111 0.00 0.00 0.00 2.52
298 299 2.279954 TATTCCCCTCCCCCTGACCC 62.280 65.000 0.00 0.00 0.00 4.46
299 300 0.768609 CTATTCCCCTCCCCCTGACC 60.769 65.000 0.00 0.00 0.00 4.02
300 301 0.267960 TCTATTCCCCTCCCCCTGAC 59.732 60.000 0.00 0.00 0.00 3.51
301 302 1.031939 TTCTATTCCCCTCCCCCTGA 58.968 55.000 0.00 0.00 0.00 3.86
302 303 1.907240 TTTCTATTCCCCTCCCCCTG 58.093 55.000 0.00 0.00 0.00 4.45
303 304 2.699964 TTTTCTATTCCCCTCCCCCT 57.300 50.000 0.00 0.00 0.00 4.79
304 305 2.091278 CCTTTTTCTATTCCCCTCCCCC 60.091 54.545 0.00 0.00 0.00 5.40
305 306 2.091278 CCCTTTTTCTATTCCCCTCCCC 60.091 54.545 0.00 0.00 0.00 4.81
306 307 2.091278 CCCCTTTTTCTATTCCCCTCCC 60.091 54.545 0.00 0.00 0.00 4.30
307 308 2.690026 GCCCCTTTTTCTATTCCCCTCC 60.690 54.545 0.00 0.00 0.00 4.30
308 309 2.667470 GCCCCTTTTTCTATTCCCCTC 58.333 52.381 0.00 0.00 0.00 4.30
309 310 1.063942 CGCCCCTTTTTCTATTCCCCT 60.064 52.381 0.00 0.00 0.00 4.79
310 311 1.399714 CGCCCCTTTTTCTATTCCCC 58.600 55.000 0.00 0.00 0.00 4.81
311 312 0.744874 GCGCCCCTTTTTCTATTCCC 59.255 55.000 0.00 0.00 0.00 3.97
312 313 1.470051 TGCGCCCCTTTTTCTATTCC 58.530 50.000 4.18 0.00 0.00 3.01
313 314 2.427095 ACATGCGCCCCTTTTTCTATTC 59.573 45.455 4.18 0.00 0.00 1.75
314 315 2.166254 CACATGCGCCCCTTTTTCTATT 59.834 45.455 4.18 0.00 0.00 1.73
315 316 1.750778 CACATGCGCCCCTTTTTCTAT 59.249 47.619 4.18 0.00 0.00 1.98
316 317 1.173043 CACATGCGCCCCTTTTTCTA 58.827 50.000 4.18 0.00 0.00 2.10
317 318 0.827507 ACACATGCGCCCCTTTTTCT 60.828 50.000 4.18 0.00 0.00 2.52
318 319 0.388520 GACACATGCGCCCCTTTTTC 60.389 55.000 4.18 0.00 0.00 2.29
319 320 1.665442 GACACATGCGCCCCTTTTT 59.335 52.632 4.18 0.00 0.00 1.94
320 321 2.275380 GGACACATGCGCCCCTTTT 61.275 57.895 4.18 0.00 0.00 2.27
321 322 2.676471 GGACACATGCGCCCCTTT 60.676 61.111 4.18 0.00 0.00 3.11
322 323 4.740822 GGGACACATGCGCCCCTT 62.741 66.667 4.18 0.00 35.76 3.95
341 342 3.735037 CTTTCCTAGCCCGCCCGTC 62.735 68.421 0.00 0.00 0.00 4.79
342 343 3.782443 CTTTCCTAGCCCGCCCGT 61.782 66.667 0.00 0.00 0.00 5.28
343 344 4.547367 CCTTTCCTAGCCCGCCCG 62.547 72.222 0.00 0.00 0.00 6.13
344 345 3.087906 TCCTTTCCTAGCCCGCCC 61.088 66.667 0.00 0.00 0.00 6.13
345 346 1.984288 ATGTCCTTTCCTAGCCCGCC 61.984 60.000 0.00 0.00 0.00 6.13
346 347 0.815615 CATGTCCTTTCCTAGCCCGC 60.816 60.000 0.00 0.00 0.00 6.13
347 348 0.179045 CCATGTCCTTTCCTAGCCCG 60.179 60.000 0.00 0.00 0.00 6.13
348 349 0.183731 CCCATGTCCTTTCCTAGCCC 59.816 60.000 0.00 0.00 0.00 5.19
349 350 0.466372 GCCCATGTCCTTTCCTAGCC 60.466 60.000 0.00 0.00 0.00 3.93
350 351 0.255890 TGCCCATGTCCTTTCCTAGC 59.744 55.000 0.00 0.00 0.00 3.42
351 352 1.281867 TGTGCCCATGTCCTTTCCTAG 59.718 52.381 0.00 0.00 0.00 3.02
352 353 1.004277 GTGTGCCCATGTCCTTTCCTA 59.996 52.381 0.00 0.00 0.00 2.94
353 354 0.251341 GTGTGCCCATGTCCTTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
354 355 1.586154 CGTGTGCCCATGTCCTTTCC 61.586 60.000 0.00 0.00 0.00 3.13
355 356 1.875963 CGTGTGCCCATGTCCTTTC 59.124 57.895 0.00 0.00 0.00 2.62
356 357 2.268076 GCGTGTGCCCATGTCCTTT 61.268 57.895 0.00 0.00 33.98 3.11
357 358 2.672996 GCGTGTGCCCATGTCCTT 60.673 61.111 0.00 0.00 33.98 3.36
383 384 3.764049 GAACAGACACGCGCGGAC 61.764 66.667 35.22 23.06 0.00 4.79
392 393 2.147958 GTATTTGTGGCGGAACAGACA 58.852 47.619 0.00 0.00 0.00 3.41
393 394 1.127951 CGTATTTGTGGCGGAACAGAC 59.872 52.381 0.00 0.00 0.00 3.51
394 395 1.001068 TCGTATTTGTGGCGGAACAGA 59.999 47.619 0.00 0.00 0.00 3.41
395 396 1.434555 TCGTATTTGTGGCGGAACAG 58.565 50.000 0.00 0.00 0.00 3.16
396 397 2.004017 GATCGTATTTGTGGCGGAACA 58.996 47.619 0.00 0.00 0.00 3.18
397 398 1.329599 GGATCGTATTTGTGGCGGAAC 59.670 52.381 0.00 0.00 0.00 3.62
398 399 1.066071 TGGATCGTATTTGTGGCGGAA 60.066 47.619 0.00 0.00 0.00 4.30
399 400 0.537653 TGGATCGTATTTGTGGCGGA 59.462 50.000 0.00 0.00 0.00 5.54
400 401 1.374560 TTGGATCGTATTTGTGGCGG 58.625 50.000 0.00 0.00 0.00 6.13
401 402 2.418628 ACTTTGGATCGTATTTGTGGCG 59.581 45.455 0.00 0.00 0.00 5.69
402 403 4.165779 CAACTTTGGATCGTATTTGTGGC 58.834 43.478 0.00 0.00 0.00 5.01
417 418 2.205022 TCCATCTCAGCCCAACTTTG 57.795 50.000 0.00 0.00 0.00 2.77
418 419 2.681976 CGATCCATCTCAGCCCAACTTT 60.682 50.000 0.00 0.00 0.00 2.66
419 420 1.134280 CGATCCATCTCAGCCCAACTT 60.134 52.381 0.00 0.00 0.00 2.66
420 421 0.467384 CGATCCATCTCAGCCCAACT 59.533 55.000 0.00 0.00 0.00 3.16
421 422 0.465705 TCGATCCATCTCAGCCCAAC 59.534 55.000 0.00 0.00 0.00 3.77
422 423 1.203237 TTCGATCCATCTCAGCCCAA 58.797 50.000 0.00 0.00 0.00 4.12
423 424 1.139654 CTTTCGATCCATCTCAGCCCA 59.860 52.381 0.00 0.00 0.00 5.36
424 425 1.876322 CTTTCGATCCATCTCAGCCC 58.124 55.000 0.00 0.00 0.00 5.19
425 426 1.224965 GCTTTCGATCCATCTCAGCC 58.775 55.000 0.00 0.00 0.00 4.85
426 427 0.857935 CGCTTTCGATCCATCTCAGC 59.142 55.000 0.00 0.00 38.10 4.26
427 428 1.067669 TCCGCTTTCGATCCATCTCAG 59.932 52.381 0.00 0.00 38.10 3.35
428 429 1.111277 TCCGCTTTCGATCCATCTCA 58.889 50.000 0.00 0.00 38.10 3.27
429 430 1.492720 GTCCGCTTTCGATCCATCTC 58.507 55.000 0.00 0.00 38.10 2.75
430 431 0.105039 GGTCCGCTTTCGATCCATCT 59.895 55.000 0.00 0.00 38.10 2.90
431 432 0.179084 TGGTCCGCTTTCGATCCATC 60.179 55.000 0.00 0.00 38.10 3.51
432 433 0.251916 TTGGTCCGCTTTCGATCCAT 59.748 50.000 0.00 0.00 37.78 3.41
433 434 0.035598 TTTGGTCCGCTTTCGATCCA 59.964 50.000 0.00 0.00 38.10 3.41
434 435 1.135774 GTTTTGGTCCGCTTTCGATCC 60.136 52.381 0.00 0.00 38.10 3.36
435 436 1.463528 CGTTTTGGTCCGCTTTCGATC 60.464 52.381 0.00 0.00 38.10 3.69
436 437 0.515564 CGTTTTGGTCCGCTTTCGAT 59.484 50.000 0.00 0.00 38.10 3.59
437 438 1.935925 CGTTTTGGTCCGCTTTCGA 59.064 52.632 0.00 0.00 38.10 3.71
438 439 1.724581 GCGTTTTGGTCCGCTTTCG 60.725 57.895 0.00 0.00 46.08 3.46
439 440 4.221873 GCGTTTTGGTCCGCTTTC 57.778 55.556 0.00 0.00 46.08 2.62
443 444 4.676586 CCACGCGTTTTGGTCCGC 62.677 66.667 10.22 0.00 46.10 5.54
444 445 4.676586 GCCACGCGTTTTGGTCCG 62.677 66.667 10.22 0.00 36.40 4.79
445 446 1.508808 TTAGCCACGCGTTTTGGTCC 61.509 55.000 10.22 0.00 36.40 4.46
446 447 0.308376 TTTAGCCACGCGTTTTGGTC 59.692 50.000 10.22 4.78 36.40 4.02
447 448 0.739561 TTTTAGCCACGCGTTTTGGT 59.260 45.000 10.22 9.71 36.40 3.67
448 449 1.125270 GTTTTAGCCACGCGTTTTGG 58.875 50.000 10.22 9.93 37.17 3.28
449 450 1.778591 CTGTTTTAGCCACGCGTTTTG 59.221 47.619 10.22 1.68 0.00 2.44
450 451 1.671845 TCTGTTTTAGCCACGCGTTTT 59.328 42.857 10.22 0.00 0.00 2.43
451 452 1.263217 CTCTGTTTTAGCCACGCGTTT 59.737 47.619 10.22 0.00 0.00 3.60
452 453 0.865769 CTCTGTTTTAGCCACGCGTT 59.134 50.000 10.22 0.00 0.00 4.84
453 454 0.249741 ACTCTGTTTTAGCCACGCGT 60.250 50.000 5.58 5.58 0.00 6.01
454 455 1.705256 TACTCTGTTTTAGCCACGCG 58.295 50.000 3.53 3.53 0.00 6.01
455 456 4.430908 ACTATACTCTGTTTTAGCCACGC 58.569 43.478 0.00 0.00 0.00 5.34
456 457 8.781196 TCTATACTATACTCTGTTTTAGCCACG 58.219 37.037 0.00 0.00 0.00 4.94
466 467 9.610705 TCGTTGTTCTTCTATACTATACTCTGT 57.389 33.333 0.00 0.00 0.00 3.41
473 474 9.953697 GACATCTTCGTTGTTCTTCTATACTAT 57.046 33.333 0.00 0.00 0.00 2.12
474 475 9.175312 AGACATCTTCGTTGTTCTTCTATACTA 57.825 33.333 0.00 0.00 0.00 1.82
475 476 8.057536 AGACATCTTCGTTGTTCTTCTATACT 57.942 34.615 0.00 0.00 0.00 2.12
476 477 8.690680 AAGACATCTTCGTTGTTCTTCTATAC 57.309 34.615 0.00 0.00 0.00 1.47
477 478 9.355215 GAAAGACATCTTCGTTGTTCTTCTATA 57.645 33.333 0.00 0.00 34.61 1.31
478 479 7.062371 CGAAAGACATCTTCGTTGTTCTTCTAT 59.938 37.037 0.00 0.00 34.61 1.98
479 480 6.362551 CGAAAGACATCTTCGTTGTTCTTCTA 59.637 38.462 0.00 0.00 34.61 2.10
480 481 5.175856 CGAAAGACATCTTCGTTGTTCTTCT 59.824 40.000 0.00 0.00 34.61 2.85
481 482 5.366752 CGAAAGACATCTTCGTTGTTCTTC 58.633 41.667 0.00 0.00 34.61 2.87
482 483 4.318831 GCGAAAGACATCTTCGTTGTTCTT 60.319 41.667 6.80 0.00 34.61 2.52
483 484 3.184581 GCGAAAGACATCTTCGTTGTTCT 59.815 43.478 6.80 0.00 34.61 3.01
484 485 3.184581 AGCGAAAGACATCTTCGTTGTTC 59.815 43.478 6.80 0.00 34.61 3.18
485 486 3.131396 AGCGAAAGACATCTTCGTTGTT 58.869 40.909 6.80 0.00 34.61 2.83
486 487 2.755650 AGCGAAAGACATCTTCGTTGT 58.244 42.857 6.80 0.00 34.61 3.32
487 488 3.430218 AGAAGCGAAAGACATCTTCGTTG 59.570 43.478 6.80 0.00 39.72 4.10
488 489 3.430218 CAGAAGCGAAAGACATCTTCGTT 59.570 43.478 6.80 0.00 39.72 3.85
489 490 2.989840 CAGAAGCGAAAGACATCTTCGT 59.010 45.455 6.80 0.00 39.72 3.85
490 491 3.245797 TCAGAAGCGAAAGACATCTTCG 58.754 45.455 0.78 0.78 39.72 3.79
491 492 4.241681 ACTCAGAAGCGAAAGACATCTTC 58.758 43.478 0.00 0.00 34.61 2.87
492 493 4.241681 GACTCAGAAGCGAAAGACATCTT 58.758 43.478 0.00 0.00 37.91 2.40
493 494 3.256879 TGACTCAGAAGCGAAAGACATCT 59.743 43.478 0.00 0.00 0.00 2.90
494 495 3.579709 TGACTCAGAAGCGAAAGACATC 58.420 45.455 0.00 0.00 0.00 3.06
495 496 3.006323 ACTGACTCAGAAGCGAAAGACAT 59.994 43.478 13.25 0.00 35.18 3.06
496 497 2.362397 ACTGACTCAGAAGCGAAAGACA 59.638 45.455 13.25 0.00 35.18 3.41
497 498 2.728839 CACTGACTCAGAAGCGAAAGAC 59.271 50.000 13.25 0.00 35.18 3.01
498 499 2.362397 ACACTGACTCAGAAGCGAAAGA 59.638 45.455 13.25 0.00 35.18 2.52
499 500 2.748605 ACACTGACTCAGAAGCGAAAG 58.251 47.619 13.25 0.00 35.18 2.62
500 501 2.890808 ACACTGACTCAGAAGCGAAA 57.109 45.000 13.25 0.00 35.18 3.46
501 502 2.351835 GCTACACTGACTCAGAAGCGAA 60.352 50.000 13.25 0.00 35.18 4.70
502 503 1.200252 GCTACACTGACTCAGAAGCGA 59.800 52.381 13.25 0.00 35.18 4.93
503 504 1.623359 GCTACACTGACTCAGAAGCG 58.377 55.000 13.25 1.29 35.18 4.68
504 505 1.200252 TCGCTACACTGACTCAGAAGC 59.800 52.381 13.25 15.21 35.18 3.86
505 506 2.486203 AGTCGCTACACTGACTCAGAAG 59.514 50.000 13.25 7.29 41.46 2.85
506 507 2.505405 AGTCGCTACACTGACTCAGAA 58.495 47.619 13.25 0.00 41.46 3.02
673 676 0.106708 CCTAGCTTAGCCAATGCCGA 59.893 55.000 0.00 0.00 38.69 5.54
1191 1199 2.026157 GTGCGATCGAGATCCGCA 59.974 61.111 21.57 20.10 41.37 5.69
1231 1239 6.838198 TGCTAATAAAATACGCTACCAGTG 57.162 37.500 0.00 0.00 0.00 3.66
1467 1500 7.493743 TGTCGTGTAGGCTAAAACATAAAAA 57.506 32.000 0.00 0.00 0.00 1.94
1663 1863 7.649057 AGACTAAAGGCTTTGTTATTGTTGTC 58.351 34.615 22.32 9.73 0.00 3.18
1671 1871 7.338449 ACTTGTTTGAGACTAAAGGCTTTGTTA 59.662 33.333 22.32 1.59 0.00 2.41
1701 1901 6.300354 TCTTTCTTTCTTTTTGAGCCTACG 57.700 37.500 0.00 0.00 0.00 3.51
1829 2029 7.946207 AGAAATGTAGCATCGAAGATAGAAGA 58.054 34.615 0.00 0.00 45.12 2.87
1841 2041 6.857777 AGCAATGTAGAGAAATGTAGCATC 57.142 37.500 0.00 0.00 0.00 3.91
1896 2101 6.619801 AGGAAACATAAACAGTGTGAGAAC 57.380 37.500 0.00 0.00 0.00 3.01
1928 2133 6.869913 CGGTAACTTCATGTAAAGAGTTGGTA 59.130 38.462 1.40 0.00 0.00 3.25
3330 3546 9.445878 CTATTGGACTGATAATGACTGCATAAT 57.554 33.333 0.00 0.00 33.44 1.28
3786 4002 4.044065 AGGTTGATATTCCAAAGGACACCA 59.956 41.667 0.00 0.00 0.00 4.17
3837 4053 5.749596 TTGTGTACAGTCATTTCAACTGG 57.250 39.130 0.00 0.00 46.73 4.00
3894 4110 4.259734 CGTATAAAAACGTTGTGCATCAGC 59.740 41.667 0.00 0.00 38.07 4.26
3895 4111 4.259734 GCGTATAAAAACGTTGTGCATCAG 59.740 41.667 0.00 0.00 44.64 2.90
3896 4112 4.152526 GCGTATAAAAACGTTGTGCATCA 58.847 39.130 0.00 0.00 44.64 3.07
3897 4113 3.540738 GGCGTATAAAAACGTTGTGCATC 59.459 43.478 0.00 0.00 44.64 3.91
3899 4115 2.548904 AGGCGTATAAAAACGTTGTGCA 59.451 40.909 0.00 0.00 44.64 4.57
3901 4117 6.097156 TGATAGGCGTATAAAAACGTTGTG 57.903 37.500 0.00 0.00 44.64 3.33
3902 4118 6.535865 TCATGATAGGCGTATAAAAACGTTGT 59.464 34.615 0.00 0.00 44.64 3.32
3903 4119 6.939627 TCATGATAGGCGTATAAAAACGTTG 58.060 36.000 0.00 0.00 44.64 4.10
3904 4120 7.542534 TTCATGATAGGCGTATAAAAACGTT 57.457 32.000 0.00 0.00 44.64 3.99
3905 4121 7.542534 TTTCATGATAGGCGTATAAAAACGT 57.457 32.000 0.00 0.00 44.64 3.99
3906 4122 9.445786 AATTTTCATGATAGGCGTATAAAAACG 57.554 29.630 0.00 0.00 45.58 3.60
3970 4186 4.956700 TCACCATAACTTCTACTGAGGAGG 59.043 45.833 0.00 0.00 31.63 4.30
4133 4349 9.113838 TGAATCAACTAGAATAAATTCCTCAGC 57.886 33.333 0.00 0.00 37.51 4.26
4358 4575 8.776376 AAAATGAAGTGTGTCAAGTTCAAAAT 57.224 26.923 8.43 0.15 41.56 1.82
4559 4776 3.454082 ACCAAATGCTTTGAGGGAACAAA 59.546 39.130 9.37 0.00 43.26 2.83
4586 4803 2.766313 TGTGTTTCTCTGCACGCTAAT 58.234 42.857 0.00 0.00 38.36 1.73
4630 4847 9.044150 CATCACAAATTAACAATGTTTTCCAGT 57.956 29.630 3.17 0.00 0.00 4.00
5078 5295 6.014242 TGCCTATCTAGTACATAATGCAAGCT 60.014 38.462 0.00 0.00 0.00 3.74
5243 5460 5.605534 ACAGAATCCCGATTATCACTTGAG 58.394 41.667 0.00 0.00 0.00 3.02
5309 5526 7.336176 TCCGATAATAGTATGTGAGCGTTCTAT 59.664 37.037 0.00 0.00 0.00 1.98
5333 5550 5.237779 TGTTACTTGTTTGATTCGGAAGTCC 59.762 40.000 0.00 0.00 0.00 3.85
5647 5864 1.273438 GGTCTGTTACCTCTACCCCCA 60.273 57.143 0.00 0.00 45.75 4.96
5791 6009 4.858850 TGTAATGGAAGAAGGATGCACAT 58.141 39.130 0.00 0.00 0.00 3.21
5837 6055 4.306600 CCTACAAACAAATTGCCTCCAAC 58.693 43.478 0.00 0.00 43.13 3.77
5905 6123 0.609131 AGTGGCGAAATGGGGAACTG 60.609 55.000 0.00 0.00 0.00 3.16
5999 6217 3.100817 CAAATATTTTCACAGCTCCGCG 58.899 45.455 0.00 0.00 0.00 6.46
6001 6219 4.414852 CCACAAATATTTTCACAGCTCCG 58.585 43.478 0.00 0.00 0.00 4.63
6009 6227 4.380444 GCGGAGAAGCCACAAATATTTTCA 60.380 41.667 0.00 0.00 35.94 2.69
6085 6305 0.604780 TGAAGAGCACTCCAAGCTGC 60.605 55.000 0.00 0.00 43.58 5.25
6110 6331 0.529378 AGGACGCCAAACTAGTACCG 59.471 55.000 0.00 0.00 0.00 4.02
6143 6365 3.681593 TTGTCATCATTTTGGCAAGGG 57.318 42.857 0.00 0.00 36.35 3.95
6151 6373 8.149647 TGTTTTTGCCTAGATTGTCATCATTTT 58.850 29.630 0.00 0.00 0.00 1.82
6169 6441 2.035756 CGCGTTGTTTCTCTGTTTTTGC 60.036 45.455 0.00 0.00 0.00 3.68
6230 6965 1.737008 GTCGACAAGGAGGGCGAAC 60.737 63.158 11.55 0.00 34.29 3.95
6233 6968 0.249073 CATAGTCGACAAGGAGGGCG 60.249 60.000 19.50 0.00 0.00 6.13
6234 6969 0.105039 CCATAGTCGACAAGGAGGGC 59.895 60.000 19.50 0.00 0.00 5.19
6498 7963 8.616076 ACAACAAATCTCTCACAACTTCTTTAG 58.384 33.333 0.00 0.00 0.00 1.85
6503 7968 8.612619 TCTTAACAACAAATCTCTCACAACTTC 58.387 33.333 0.00 0.00 0.00 3.01
6505 7970 7.987458 TCTCTTAACAACAAATCTCTCACAACT 59.013 33.333 0.00 0.00 0.00 3.16
6533 7998 8.954350 GTAGGTAGGTAAATAGATAAGCGATGA 58.046 37.037 0.00 0.00 0.00 2.92
6562 8027 8.816894 ACATGGTGGACGAGAATAGATATTTAT 58.183 33.333 0.00 0.00 0.00 1.40
6567 8038 4.893524 ACACATGGTGGACGAGAATAGATA 59.106 41.667 0.00 0.00 37.94 1.98
6569 8040 3.096852 ACACATGGTGGACGAGAATAGA 58.903 45.455 0.00 0.00 37.94 1.98
6570 8041 3.526931 ACACATGGTGGACGAGAATAG 57.473 47.619 0.00 0.00 37.94 1.73
6571 8042 5.607939 AATACACATGGTGGACGAGAATA 57.392 39.130 0.00 0.00 37.94 1.75
6572 8043 4.487714 AATACACATGGTGGACGAGAAT 57.512 40.909 0.00 0.00 37.94 2.40
6573 8044 3.973206 AATACACATGGTGGACGAGAA 57.027 42.857 0.00 0.00 37.94 2.87
6574 8045 3.973206 AAATACACATGGTGGACGAGA 57.027 42.857 0.00 0.00 37.94 4.04
6575 8046 4.932799 TGTAAAATACACATGGTGGACGAG 59.067 41.667 0.00 0.00 37.94 4.18
6577 8048 4.932799 TCTGTAAAATACACATGGTGGACG 59.067 41.667 0.00 0.00 37.94 4.79
6578 8049 6.811253 TTCTGTAAAATACACATGGTGGAC 57.189 37.500 0.00 0.00 37.94 4.02
6630 8110 6.993308 TCTTATCGACTTACTGATAGAGTGCT 59.007 38.462 0.00 0.00 35.96 4.40
6673 8153 4.611943 CACGACACAGAGAGAGAGAAAAA 58.388 43.478 0.00 0.00 0.00 1.94
6674 8154 3.551046 GCACGACACAGAGAGAGAGAAAA 60.551 47.826 0.00 0.00 0.00 2.29
6675 8155 2.030717 GCACGACACAGAGAGAGAGAAA 60.031 50.000 0.00 0.00 0.00 2.52
6676 8156 1.537638 GCACGACACAGAGAGAGAGAA 59.462 52.381 0.00 0.00 0.00 2.87
6677 8157 1.160989 GCACGACACAGAGAGAGAGA 58.839 55.000 0.00 0.00 0.00 3.10
6678 8158 0.877743 TGCACGACACAGAGAGAGAG 59.122 55.000 0.00 0.00 0.00 3.20
6679 8159 3.021451 TGCACGACACAGAGAGAGA 57.979 52.632 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.