Multiple sequence alignment - TraesCS6B01G268700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G268700 chr6B 100.000 3254 0 0 1 3254 483331433 483334686 0.000000e+00 6010
1 TraesCS6B01G268700 chr6B 98.611 72 1 0 292 363 483331462 483331533 9.480000e-26 128
2 TraesCS6B01G268700 chr6B 98.611 72 1 0 30 101 483331724 483331795 9.480000e-26 128
3 TraesCS6B01G268700 chr6D 91.884 2834 94 48 292 3054 337080118 337077350 0.000000e+00 3834
4 TraesCS6B01G268700 chr6D 97.030 101 3 0 1 101 337080147 337080047 1.550000e-38 171
5 TraesCS6B01G268700 chr6A 90.697 2827 138 53 325 3054 477517738 477514940 0.000000e+00 3648
6 TraesCS6B01G268700 chr6A 96.682 211 6 1 3044 3254 16232640 16232431 1.860000e-92 350
7 TraesCS6B01G268700 chr6A 94.152 171 9 1 124 293 606771854 606772024 3.220000e-65 259
8 TraesCS6B01G268700 chr6A 95.092 163 7 1 136 297 38757969 38757807 4.170000e-64 255
9 TraesCS6B01G268700 chr6A 88.119 101 1 1 1 101 477517789 477517700 3.430000e-20 110
10 TraesCS6B01G268700 chr5B 98.068 207 4 0 3048 3254 474043175 474043381 8.580000e-96 361
11 TraesCS6B01G268700 chr5B 97.585 207 5 0 3048 3254 610021371 610021165 3.990000e-94 355
12 TraesCS6B01G268700 chr4B 98.058 206 4 0 3049 3254 68116779 68116574 3.090000e-95 359
13 TraesCS6B01G268700 chr4B 93.452 168 10 1 124 290 357999363 357999530 6.970000e-62 248
14 TraesCS6B01G268700 chr1D 98.058 206 3 1 3049 3254 182614472 182614676 1.110000e-94 357
15 TraesCS6B01G268700 chr1A 97.156 211 6 0 3044 3254 28408671 28408881 1.110000e-94 357
16 TraesCS6B01G268700 chr2B 96.698 212 7 0 3043 3254 763962019 763962230 1.440000e-93 353
17 TraesCS6B01G268700 chr3B 97.115 208 6 0 3047 3254 19824802 19825009 5.170000e-93 351
18 TraesCS6B01G268700 chr3B 95.597 159 7 0 136 294 237628079 237628237 4.170000e-64 255
19 TraesCS6B01G268700 chr7D 97.101 207 6 0 3048 3254 62255594 62255388 1.860000e-92 350
20 TraesCS6B01G268700 chr5A 96.815 157 5 0 136 292 411445038 411445194 2.490000e-66 263
21 TraesCS6B01G268700 chr4A 96.178 157 6 0 136 292 179067920 179067764 1.160000e-64 257
22 TraesCS6B01G268700 chr1B 94.545 165 9 0 136 300 167110376 167110540 4.170000e-64 255
23 TraesCS6B01G268700 chr1B 92.941 170 11 1 123 291 418825344 418825175 2.510000e-61 246
24 TraesCS6B01G268700 chr7B 93.976 166 10 0 136 301 38676434 38676599 5.390000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G268700 chr6B 483331433 483334686 3253 False 2088.666667 6010 99.074 1 3254 3 chr6B.!!$F1 3253
1 TraesCS6B01G268700 chr6D 337077350 337080147 2797 True 2002.500000 3834 94.457 1 3054 2 chr6D.!!$R1 3053
2 TraesCS6B01G268700 chr6A 477514940 477517789 2849 True 1879.000000 3648 89.408 1 3054 2 chr6A.!!$R3 3053

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 0.181350 CGCTAGCCCCTGGAGAAATT 59.819 55.0 9.66 0.0 0.00 1.82 F
437 440 0.439985 CATCAAAGGACAGCGACGTG 59.560 55.0 0.00 0.0 0.00 4.49 F
816 825 0.859232 TTCTGCTCGTGCGTTTCTTC 59.141 50.0 4.84 0.0 43.34 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2123 0.517742 GTGCGAAAATGACCGTACGC 60.518 55.0 10.49 0.00 44.95 4.42 R
2169 2259 0.102300 CGGTGATGTGCGATCCACTA 59.898 55.0 13.32 3.64 44.92 2.74 R
2335 2425 0.738975 GGCTAACTTCCCCAATTCGC 59.261 55.0 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.106332 CCGGCCGTATCTTTCGCT 59.894 61.111 26.12 0.00 0.00 4.93
80 81 1.276145 CGGCCGTATCTTTCGCTAGC 61.276 60.000 19.50 4.06 0.00 3.42
81 82 0.944788 GGCCGTATCTTTCGCTAGCC 60.945 60.000 9.66 0.00 0.00 3.93
82 83 0.944788 GCCGTATCTTTCGCTAGCCC 60.945 60.000 9.66 0.00 0.00 5.19
83 84 0.319641 CCGTATCTTTCGCTAGCCCC 60.320 60.000 9.66 0.00 0.00 5.80
84 85 0.674534 CGTATCTTTCGCTAGCCCCT 59.325 55.000 9.66 0.00 0.00 4.79
85 86 1.603172 CGTATCTTTCGCTAGCCCCTG 60.603 57.143 9.66 0.00 0.00 4.45
86 87 1.048601 TATCTTTCGCTAGCCCCTGG 58.951 55.000 9.66 0.00 0.00 4.45
87 88 0.691078 ATCTTTCGCTAGCCCCTGGA 60.691 55.000 9.66 0.00 0.00 3.86
88 89 1.144936 CTTTCGCTAGCCCCTGGAG 59.855 63.158 9.66 0.00 0.00 3.86
89 90 1.305802 TTTCGCTAGCCCCTGGAGA 60.306 57.895 9.66 0.00 0.00 3.71
90 91 0.907704 TTTCGCTAGCCCCTGGAGAA 60.908 55.000 9.66 1.84 30.44 2.87
91 92 0.907704 TTCGCTAGCCCCTGGAGAAA 60.908 55.000 9.66 0.00 29.58 2.52
92 93 0.691078 TCGCTAGCCCCTGGAGAAAT 60.691 55.000 9.66 0.00 0.00 2.17
93 94 0.181350 CGCTAGCCCCTGGAGAAATT 59.819 55.000 9.66 0.00 0.00 1.82
94 95 1.416401 CGCTAGCCCCTGGAGAAATTA 59.584 52.381 9.66 0.00 0.00 1.40
95 96 2.039084 CGCTAGCCCCTGGAGAAATTAT 59.961 50.000 9.66 0.00 0.00 1.28
96 97 3.680490 GCTAGCCCCTGGAGAAATTATC 58.320 50.000 2.29 0.00 0.00 1.75
97 98 3.073062 GCTAGCCCCTGGAGAAATTATCA 59.927 47.826 2.29 0.00 0.00 2.15
98 99 3.872459 AGCCCCTGGAGAAATTATCAG 57.128 47.619 0.00 0.00 0.00 2.90
99 100 2.158549 AGCCCCTGGAGAAATTATCAGC 60.159 50.000 0.00 0.00 0.00 4.26
100 101 2.423373 GCCCCTGGAGAAATTATCAGCA 60.423 50.000 0.00 0.00 0.00 4.41
101 102 3.484407 CCCCTGGAGAAATTATCAGCAG 58.516 50.000 0.00 0.00 0.00 4.24
102 103 2.883386 CCCTGGAGAAATTATCAGCAGC 59.117 50.000 0.00 0.00 0.00 5.25
103 104 2.883386 CCTGGAGAAATTATCAGCAGCC 59.117 50.000 0.00 0.00 0.00 4.85
104 105 2.883386 CTGGAGAAATTATCAGCAGCCC 59.117 50.000 0.00 0.00 0.00 5.19
105 106 2.234143 GGAGAAATTATCAGCAGCCCC 58.766 52.381 0.00 0.00 0.00 5.80
106 107 2.234143 GAGAAATTATCAGCAGCCCCC 58.766 52.381 0.00 0.00 0.00 5.40
107 108 0.954452 GAAATTATCAGCAGCCCCCG 59.046 55.000 0.00 0.00 0.00 5.73
108 109 1.109323 AAATTATCAGCAGCCCCCGC 61.109 55.000 0.00 0.00 0.00 6.13
109 110 2.283143 AATTATCAGCAGCCCCCGCA 62.283 55.000 0.00 0.00 37.52 5.69
110 111 2.283143 ATTATCAGCAGCCCCCGCAA 62.283 55.000 0.00 0.00 37.52 4.85
111 112 2.491770 TTATCAGCAGCCCCCGCAAA 62.492 55.000 0.00 0.00 37.52 3.68
112 113 2.491770 TATCAGCAGCCCCCGCAAAA 62.492 55.000 0.00 0.00 37.52 2.44
113 114 3.614698 CAGCAGCCCCCGCAAAAA 61.615 61.111 0.00 0.00 37.52 1.94
141 142 8.976986 AAAAGAGAAATTATCAGCAATCACAC 57.023 30.769 0.00 0.00 0.00 3.82
142 143 7.692460 AAGAGAAATTATCAGCAATCACACA 57.308 32.000 0.00 0.00 0.00 3.72
143 144 7.081526 AGAGAAATTATCAGCAATCACACAC 57.918 36.000 0.00 0.00 0.00 3.82
144 145 6.883217 AGAGAAATTATCAGCAATCACACACT 59.117 34.615 0.00 0.00 0.00 3.55
145 146 7.065563 AGAGAAATTATCAGCAATCACACACTC 59.934 37.037 0.00 0.00 0.00 3.51
146 147 5.824904 AATTATCAGCAATCACACACTCC 57.175 39.130 0.00 0.00 0.00 3.85
147 148 2.865119 ATCAGCAATCACACACTCCA 57.135 45.000 0.00 0.00 0.00 3.86
148 149 2.636647 TCAGCAATCACACACTCCAA 57.363 45.000 0.00 0.00 0.00 3.53
149 150 2.497138 TCAGCAATCACACACTCCAAG 58.503 47.619 0.00 0.00 0.00 3.61
150 151 2.104622 TCAGCAATCACACACTCCAAGA 59.895 45.455 0.00 0.00 0.00 3.02
151 152 2.880268 CAGCAATCACACACTCCAAGAA 59.120 45.455 0.00 0.00 0.00 2.52
152 153 3.316029 CAGCAATCACACACTCCAAGAAA 59.684 43.478 0.00 0.00 0.00 2.52
153 154 3.316308 AGCAATCACACACTCCAAGAAAC 59.684 43.478 0.00 0.00 0.00 2.78
154 155 3.066621 GCAATCACACACTCCAAGAAACA 59.933 43.478 0.00 0.00 0.00 2.83
155 156 4.439974 GCAATCACACACTCCAAGAAACAA 60.440 41.667 0.00 0.00 0.00 2.83
156 157 5.737063 GCAATCACACACTCCAAGAAACAAT 60.737 40.000 0.00 0.00 0.00 2.71
157 158 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
158 159 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
159 160 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
160 161 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
161 162 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
162 163 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
163 164 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
164 165 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
165 166 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
166 167 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
167 168 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
168 169 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
169 170 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
170 171 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
171 172 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
190 191 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
191 192 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
192 193 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
193 194 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
194 195 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
195 196 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
196 197 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
197 198 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
198 199 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
199 200 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
200 201 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
201 202 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
202 203 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
203 204 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
204 205 4.805719 CGTTGCATGACACTACATAGATGT 59.194 41.667 0.00 0.08 44.48 3.06
205 206 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
206 207 6.508563 CGTTGCATGACACTACATAGATGTTC 60.509 42.308 0.00 0.00 41.97 3.18
207 208 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
208 209 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
209 210 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
210 211 7.015584 TGCATGACACTACATAGATGTTCCTAT 59.984 37.037 0.00 0.00 41.97 2.57
211 212 7.543868 GCATGACACTACATAGATGTTCCTATC 59.456 40.741 0.00 0.00 41.97 2.08
212 213 7.526142 TGACACTACATAGATGTTCCTATCC 57.474 40.000 0.00 0.00 41.97 2.59
213 214 7.066781 TGACACTACATAGATGTTCCTATCCA 58.933 38.462 0.00 0.00 41.97 3.41
214 215 7.730332 TGACACTACATAGATGTTCCTATCCAT 59.270 37.037 0.00 0.00 41.97 3.41
215 216 8.497910 ACACTACATAGATGTTCCTATCCATT 57.502 34.615 0.00 0.00 41.97 3.16
216 217 9.601810 ACACTACATAGATGTTCCTATCCATTA 57.398 33.333 0.00 0.00 41.97 1.90
220 221 8.685257 ACATAGATGTTCCTATCCATTATGGA 57.315 34.615 16.99 16.99 44.59 3.41
221 222 8.766476 ACATAGATGTTCCTATCCATTATGGAG 58.234 37.037 19.39 6.79 44.02 3.86
236 237 9.615660 TCCATTATGGAGGTAGTAACATAATCT 57.384 33.333 10.29 0.00 42.67 2.40
240 241 9.543231 TTATGGAGGTAGTAACATAATCTAGGG 57.457 37.037 0.00 0.00 32.58 3.53
241 242 7.170554 TGGAGGTAGTAACATAATCTAGGGA 57.829 40.000 0.00 0.00 0.00 4.20
242 243 7.598248 TGGAGGTAGTAACATAATCTAGGGAA 58.402 38.462 0.00 0.00 0.00 3.97
243 244 7.728981 TGGAGGTAGTAACATAATCTAGGGAAG 59.271 40.741 0.00 0.00 0.00 3.46
244 245 7.729431 GGAGGTAGTAACATAATCTAGGGAAGT 59.271 40.741 0.00 0.00 0.00 3.01
245 246 8.480133 AGGTAGTAACATAATCTAGGGAAGTG 57.520 38.462 0.00 0.00 0.00 3.16
246 247 8.066247 AGGTAGTAACATAATCTAGGGAAGTGT 58.934 37.037 0.00 0.00 0.00 3.55
247 248 8.142551 GGTAGTAACATAATCTAGGGAAGTGTG 58.857 40.741 0.00 0.00 0.00 3.82
248 249 7.735326 AGTAACATAATCTAGGGAAGTGTGT 57.265 36.000 0.00 0.00 0.00 3.72
249 250 8.834004 AGTAACATAATCTAGGGAAGTGTGTA 57.166 34.615 0.00 0.00 0.00 2.90
250 251 9.263446 AGTAACATAATCTAGGGAAGTGTGTAA 57.737 33.333 0.00 0.00 0.00 2.41
251 252 9.530633 GTAACATAATCTAGGGAAGTGTGTAAG 57.469 37.037 0.00 0.00 0.00 2.34
252 253 7.735326 ACATAATCTAGGGAAGTGTGTAAGT 57.265 36.000 0.00 0.00 0.00 2.24
253 254 8.147244 ACATAATCTAGGGAAGTGTGTAAGTT 57.853 34.615 0.00 0.00 0.00 2.66
254 255 9.263446 ACATAATCTAGGGAAGTGTGTAAGTTA 57.737 33.333 0.00 0.00 0.00 2.24
255 256 9.530633 CATAATCTAGGGAAGTGTGTAAGTTAC 57.469 37.037 6.06 6.06 0.00 2.50
256 257 7.793948 AATCTAGGGAAGTGTGTAAGTTACT 57.206 36.000 14.00 0.00 0.00 2.24
257 258 8.890410 AATCTAGGGAAGTGTGTAAGTTACTA 57.110 34.615 14.00 1.06 0.00 1.82
258 259 7.934855 TCTAGGGAAGTGTGTAAGTTACTAG 57.065 40.000 14.00 4.64 33.84 2.57
259 260 5.402997 AGGGAAGTGTGTAAGTTACTAGC 57.597 43.478 14.00 5.48 0.00 3.42
260 261 5.085219 AGGGAAGTGTGTAAGTTACTAGCT 58.915 41.667 14.00 6.35 0.00 3.32
261 262 5.543020 AGGGAAGTGTGTAAGTTACTAGCTT 59.457 40.000 14.00 13.25 0.00 3.74
262 263 6.723052 AGGGAAGTGTGTAAGTTACTAGCTTA 59.277 38.462 14.00 0.00 0.00 3.09
263 264 7.399478 AGGGAAGTGTGTAAGTTACTAGCTTAT 59.601 37.037 14.00 3.60 32.01 1.73
264 265 7.491696 GGGAAGTGTGTAAGTTACTAGCTTATG 59.508 40.741 14.00 0.00 32.01 1.90
265 266 8.033626 GGAAGTGTGTAAGTTACTAGCTTATGT 58.966 37.037 14.00 0.00 32.01 2.29
266 267 9.420551 GAAGTGTGTAAGTTACTAGCTTATGTT 57.579 33.333 14.00 0.00 32.01 2.71
267 268 8.983307 AGTGTGTAAGTTACTAGCTTATGTTC 57.017 34.615 14.00 0.00 32.01 3.18
268 269 8.804204 AGTGTGTAAGTTACTAGCTTATGTTCT 58.196 33.333 14.00 0.00 32.01 3.01
269 270 9.420551 GTGTGTAAGTTACTAGCTTATGTTCTT 57.579 33.333 14.00 1.42 32.01 2.52
282 283 8.494016 AGCTTATGTTCTTACTCATTGTAACC 57.506 34.615 0.00 0.00 36.33 2.85
283 284 8.100791 AGCTTATGTTCTTACTCATTGTAACCA 58.899 33.333 0.00 0.00 36.33 3.67
284 285 8.391106 GCTTATGTTCTTACTCATTGTAACCAG 58.609 37.037 0.00 0.00 36.33 4.00
285 286 6.743575 ATGTTCTTACTCATTGTAACCAGC 57.256 37.500 0.00 0.00 36.33 4.85
286 287 5.001232 TGTTCTTACTCATTGTAACCAGCC 58.999 41.667 0.00 0.00 36.33 4.85
287 288 5.221843 TGTTCTTACTCATTGTAACCAGCCT 60.222 40.000 0.00 0.00 36.33 4.58
288 289 6.014070 TGTTCTTACTCATTGTAACCAGCCTA 60.014 38.462 0.00 0.00 36.33 3.93
289 290 6.614694 TCTTACTCATTGTAACCAGCCTAA 57.385 37.500 0.00 0.00 36.33 2.69
290 291 7.195374 TCTTACTCATTGTAACCAGCCTAAT 57.805 36.000 0.00 0.00 36.33 1.73
291 292 8.313944 TCTTACTCATTGTAACCAGCCTAATA 57.686 34.615 0.00 0.00 36.33 0.98
292 293 8.421784 TCTTACTCATTGTAACCAGCCTAATAG 58.578 37.037 0.00 0.00 36.33 1.73
293 294 6.561519 ACTCATTGTAACCAGCCTAATAGT 57.438 37.500 0.00 0.00 0.00 2.12
294 295 6.583562 ACTCATTGTAACCAGCCTAATAGTC 58.416 40.000 0.00 0.00 0.00 2.59
295 296 6.156256 ACTCATTGTAACCAGCCTAATAGTCA 59.844 38.462 0.00 0.00 0.00 3.41
296 297 6.346096 TCATTGTAACCAGCCTAATAGTCAC 58.654 40.000 0.00 0.00 0.00 3.67
297 298 4.380841 TGTAACCAGCCTAATAGTCACG 57.619 45.455 0.00 0.00 0.00 4.35
298 299 2.981859 AACCAGCCTAATAGTCACGG 57.018 50.000 0.00 0.00 0.00 4.94
299 300 2.154567 ACCAGCCTAATAGTCACGGA 57.845 50.000 0.00 0.00 0.00 4.69
300 301 2.032620 ACCAGCCTAATAGTCACGGAG 58.967 52.381 0.00 0.00 0.00 4.63
301 302 2.307768 CCAGCCTAATAGTCACGGAGA 58.692 52.381 0.00 0.00 0.00 3.71
302 303 2.294791 CCAGCCTAATAGTCACGGAGAG 59.705 54.545 0.00 0.00 0.00 3.20
303 304 1.957877 AGCCTAATAGTCACGGAGAGC 59.042 52.381 0.00 0.00 0.00 4.09
304 305 1.957877 GCCTAATAGTCACGGAGAGCT 59.042 52.381 0.00 0.00 0.00 4.09
305 306 2.287909 GCCTAATAGTCACGGAGAGCTG 60.288 54.545 0.00 0.00 0.00 4.24
306 307 2.287909 CCTAATAGTCACGGAGAGCTGC 60.288 54.545 0.00 0.00 0.00 5.25
307 308 0.461961 AATAGTCACGGAGAGCTGCC 59.538 55.000 0.00 0.00 0.00 4.85
308 309 1.395826 ATAGTCACGGAGAGCTGCCC 61.396 60.000 0.00 0.00 0.00 5.36
309 310 4.459089 GTCACGGAGAGCTGCCCC 62.459 72.222 0.00 0.00 0.00 5.80
437 440 0.439985 CATCAAAGGACAGCGACGTG 59.560 55.000 0.00 0.00 0.00 4.49
443 446 2.742372 GACAGCGACGTGGCCATT 60.742 61.111 19.50 0.00 0.00 3.16
532 539 4.700692 CCCGATCAGCTGCTACTAATACTA 59.299 45.833 9.47 0.00 0.00 1.82
565 572 6.685873 GCTTAATTAGTTAGGTGGAGTCTCCC 60.686 46.154 16.60 7.55 35.03 4.30
761 770 3.178865 ACCAACCCATATATACCTCCCG 58.821 50.000 0.00 0.00 0.00 5.14
762 771 2.093128 CCAACCCATATATACCTCCCGC 60.093 54.545 0.00 0.00 0.00 6.13
794 803 2.956964 GCCGGATCTCACGCTTCG 60.957 66.667 5.05 0.00 0.00 3.79
796 805 1.138883 CCGGATCTCACGCTTCGAA 59.861 57.895 0.00 0.00 0.00 3.71
801 810 2.537625 GGATCTCACGCTTCGAATTCTG 59.462 50.000 0.00 0.00 0.00 3.02
816 825 0.859232 TTCTGCTCGTGCGTTTCTTC 59.141 50.000 4.84 0.00 43.34 2.87
823 832 1.067364 TCGTGCGTTTCTTCACACCTA 59.933 47.619 0.00 0.00 33.03 3.08
824 833 2.066262 CGTGCGTTTCTTCACACCTAT 58.934 47.619 0.00 0.00 33.03 2.57
885 894 1.605058 TACTCTCTTCCCGCAGCACC 61.605 60.000 0.00 0.00 0.00 5.01
886 895 2.604686 TCTCTTCCCGCAGCACCT 60.605 61.111 0.00 0.00 0.00 4.00
912 949 2.242797 TTAACCGCTTACCCTCCCGC 62.243 60.000 0.00 0.00 0.00 6.13
1017 1077 2.110967 CATGGCTGAGCACCCTTCG 61.111 63.158 6.82 0.00 0.00 3.79
1039 1105 1.882989 AACCTCCTCGTCTGCTGCTC 61.883 60.000 0.00 0.00 0.00 4.26
1044 1110 3.071206 TCGTCTGCTGCTCCTCCC 61.071 66.667 0.00 0.00 0.00 4.30
1140 1206 3.090219 GCCGGTTCACCTAGGCGAT 62.090 63.158 9.30 0.00 40.17 4.58
1151 1217 0.898789 CTAGGCGATACGGTGGGGAT 60.899 60.000 0.00 0.00 0.00 3.85
1161 1227 2.584143 GTGGGGATAACGACGGCG 60.584 66.667 10.39 10.39 44.79 6.46
1440 1512 2.836360 TCCCCCGAGGACATACGC 60.836 66.667 0.00 0.00 40.93 4.42
1532 1604 3.610791 CTTCGACTGCCGCGACAGA 62.611 63.158 29.50 3.81 40.25 3.41
1571 1643 1.463056 CGGCACAATAACAAGCGAAGA 59.537 47.619 0.00 0.00 0.00 2.87
1572 1644 2.095969 CGGCACAATAACAAGCGAAGAA 60.096 45.455 0.00 0.00 0.00 2.52
1838 1913 0.949105 GGTTGGTACGTGCTCCAGTG 60.949 60.000 3.01 0.00 35.05 3.66
2041 2123 9.018716 CAGATTCGATATTATGTTAGCTAGCTG 57.981 37.037 27.68 5.72 0.00 4.24
2143 2233 2.483106 GCCACGTACCTTTTTCTTCCTC 59.517 50.000 0.00 0.00 0.00 3.71
2250 2340 9.487790 CATAAAAATATTTGGCGGTGGATAAAT 57.512 29.630 0.39 0.00 0.00 1.40
2300 2390 8.933653 TGGATCCAATTTTCCTTTTCTTTAGTT 58.066 29.630 13.46 0.00 32.95 2.24
2326 2416 6.967199 GTGTCTTTTGGCTGTAGTTTATATGC 59.033 38.462 0.00 0.00 0.00 3.14
2335 2425 8.088365 TGGCTGTAGTTTATATGCAGTATACTG 58.912 37.037 25.68 25.68 46.40 2.74
2617 2726 3.992943 AAGGTGACATGGATAAACCGA 57.007 42.857 0.00 0.00 42.61 4.69
2634 2743 2.095853 ACCGATCAGTTGCTTATTTGCG 59.904 45.455 0.00 0.00 35.36 4.85
2691 2826 4.901814 CTCATAATTGAGCTGTTGAACGG 58.098 43.478 0.00 0.00 42.79 4.44
2711 2846 3.211045 GGCGGTAAATGGCTTCTTCATA 58.789 45.455 0.00 0.00 0.00 2.15
2768 2903 1.811558 CGCAGGTCCAGGGTTCATATG 60.812 57.143 0.00 0.00 0.00 1.78
2769 2904 1.972872 CAGGTCCAGGGTTCATATGC 58.027 55.000 0.00 0.00 0.00 3.14
2786 2921 8.947940 GTTCATATGCGTTCATACTTGATTTTC 58.052 33.333 0.00 0.00 37.94 2.29
2799 2937 9.874215 CATACTTGATTTTCTACATGCTGTATG 57.126 33.333 4.09 4.09 42.68 2.39
2814 2952 3.922240 GCTGTATGTGCCAAAATGAACAG 59.078 43.478 0.00 0.00 36.92 3.16
2879 3022 6.272318 ACAACTTGGTGAAAACACACATATG 58.728 36.000 0.00 0.00 41.88 1.78
2880 3023 5.452078 ACTTGGTGAAAACACACATATGG 57.548 39.130 7.80 0.00 41.88 2.74
2881 3024 5.136828 ACTTGGTGAAAACACACATATGGA 58.863 37.500 7.80 0.00 41.88 3.41
2882 3025 5.774690 ACTTGGTGAAAACACACATATGGAT 59.225 36.000 7.80 0.00 41.88 3.41
2911 3054 3.502211 AGAATTTCCACAGGTACGCAAAG 59.498 43.478 0.00 0.00 0.00 2.77
2918 3061 1.228124 AGGTACGCAAAGGCAAGCA 60.228 52.632 0.00 0.00 41.24 3.91
2923 3066 0.958091 ACGCAAAGGCAAGCACATAA 59.042 45.000 0.00 0.00 41.24 1.90
2961 3105 4.824289 AGATCGAATTGGCAAAAGCAAAT 58.176 34.783 3.01 0.00 0.00 2.32
2967 3111 5.845433 CGAATTGGCAAAAGCAAATACAAAC 59.155 36.000 3.01 0.00 0.00 2.93
3001 3145 6.537301 TCAAATTGTCGTACTTAATAGCAGGG 59.463 38.462 0.00 0.00 0.00 4.45
3002 3146 3.447918 TGTCGTACTTAATAGCAGGGC 57.552 47.619 0.00 0.00 0.00 5.19
3025 3169 4.452455 CACTCTACCATTGAGTCAACAACC 59.548 45.833 7.96 0.00 42.21 3.77
3074 3218 4.571372 CCTCCGTCTAGGTGAATAAGTC 57.429 50.000 0.00 0.00 41.99 3.01
3075 3219 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
3076 3220 4.585162 CCTCCGTCTAGGTGAATAAGTCAT 59.415 45.833 0.00 0.00 38.90 3.06
3077 3221 5.069251 CCTCCGTCTAGGTGAATAAGTCATT 59.931 44.000 0.00 0.00 38.90 2.57
3078 3222 6.145338 TCCGTCTAGGTGAATAAGTCATTC 57.855 41.667 0.00 0.00 40.27 2.67
3079 3223 4.976731 CCGTCTAGGTGAATAAGTCATTCG 59.023 45.833 0.00 0.00 45.25 3.34
3090 3234 8.803201 TGAATAAGTCATTCGCATAGTTCTAG 57.197 34.615 0.00 0.00 45.25 2.43
3091 3235 7.867909 TGAATAAGTCATTCGCATAGTTCTAGG 59.132 37.037 0.00 0.00 45.25 3.02
3092 3236 5.599999 AAGTCATTCGCATAGTTCTAGGT 57.400 39.130 0.00 0.00 0.00 3.08
3093 3237 5.189659 AGTCATTCGCATAGTTCTAGGTC 57.810 43.478 0.00 0.00 0.00 3.85
3094 3238 4.645136 AGTCATTCGCATAGTTCTAGGTCA 59.355 41.667 0.00 0.00 0.00 4.02
3095 3239 5.303078 AGTCATTCGCATAGTTCTAGGTCAT 59.697 40.000 0.00 0.00 0.00 3.06
3096 3240 5.631512 GTCATTCGCATAGTTCTAGGTCATC 59.368 44.000 0.00 0.00 0.00 2.92
3097 3241 3.898517 TCGCATAGTTCTAGGTCATCG 57.101 47.619 0.00 0.00 0.00 3.84
3098 3242 3.473625 TCGCATAGTTCTAGGTCATCGA 58.526 45.455 0.00 0.00 0.00 3.59
3099 3243 4.072839 TCGCATAGTTCTAGGTCATCGAT 58.927 43.478 0.00 0.00 0.00 3.59
3100 3244 4.519350 TCGCATAGTTCTAGGTCATCGATT 59.481 41.667 0.00 0.00 0.00 3.34
3101 3245 5.009710 TCGCATAGTTCTAGGTCATCGATTT 59.990 40.000 0.00 0.00 0.00 2.17
3102 3246 5.117745 CGCATAGTTCTAGGTCATCGATTTG 59.882 44.000 0.00 0.00 0.00 2.32
3103 3247 6.216569 GCATAGTTCTAGGTCATCGATTTGA 58.783 40.000 0.00 0.00 0.00 2.69
3104 3248 6.364706 GCATAGTTCTAGGTCATCGATTTGAG 59.635 42.308 0.00 0.00 0.00 3.02
3105 3249 4.688021 AGTTCTAGGTCATCGATTTGAGC 58.312 43.478 9.64 9.64 42.94 4.26
3106 3250 4.160439 AGTTCTAGGTCATCGATTTGAGCA 59.840 41.667 17.73 5.86 44.58 4.26
3107 3251 4.736126 TCTAGGTCATCGATTTGAGCAA 57.264 40.909 17.73 3.36 44.58 3.91
3108 3252 5.282055 TCTAGGTCATCGATTTGAGCAAT 57.718 39.130 17.73 3.80 44.58 3.56
3109 3253 5.674525 TCTAGGTCATCGATTTGAGCAATT 58.325 37.500 17.73 3.20 44.58 2.32
3110 3254 6.816136 TCTAGGTCATCGATTTGAGCAATTA 58.184 36.000 17.73 4.05 44.58 1.40
3111 3255 7.272244 TCTAGGTCATCGATTTGAGCAATTAA 58.728 34.615 17.73 0.00 44.58 1.40
3112 3256 6.757897 AGGTCATCGATTTGAGCAATTAAA 57.242 33.333 17.73 0.00 44.58 1.52
3113 3257 7.338800 AGGTCATCGATTTGAGCAATTAAAT 57.661 32.000 17.73 0.00 44.58 1.40
3114 3258 8.450578 AGGTCATCGATTTGAGCAATTAAATA 57.549 30.769 17.73 0.00 44.58 1.40
3115 3259 9.071276 AGGTCATCGATTTGAGCAATTAAATAT 57.929 29.630 17.73 0.00 44.58 1.28
3116 3260 9.121517 GGTCATCGATTTGAGCAATTAAATATG 57.878 33.333 12.18 0.00 42.34 1.78
3117 3261 9.669353 GTCATCGATTTGAGCAATTAAATATGT 57.331 29.630 0.00 0.00 0.00 2.29
3118 3262 9.667989 TCATCGATTTGAGCAATTAAATATGTG 57.332 29.630 0.00 0.00 0.00 3.21
3119 3263 9.454585 CATCGATTTGAGCAATTAAATATGTGT 57.545 29.630 0.00 0.00 0.00 3.72
3234 3378 8.928270 AGTTAAATCATTGACCTAGAACTACG 57.072 34.615 0.00 0.00 0.00 3.51
3235 3379 7.491696 AGTTAAATCATTGACCTAGAACTACGC 59.508 37.037 0.00 0.00 0.00 4.42
3236 3380 3.416119 TCATTGACCTAGAACTACGCG 57.584 47.619 3.53 3.53 0.00 6.01
3237 3381 3.011818 TCATTGACCTAGAACTACGCGA 58.988 45.455 15.93 0.00 0.00 5.87
3238 3382 3.441222 TCATTGACCTAGAACTACGCGAA 59.559 43.478 15.93 0.00 0.00 4.70
3239 3383 4.097437 TCATTGACCTAGAACTACGCGAAT 59.903 41.667 15.93 0.00 0.00 3.34
3240 3384 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
3241 3385 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
3242 3386 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
3243 3387 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
3244 3388 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
3245 3389 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
3246 3390 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
3247 3391 6.183360 ACCTAGAACTACGCGAATGACTTATT 60.183 38.462 15.93 0.00 0.00 1.40
3248 3392 6.360148 CCTAGAACTACGCGAATGACTTATTC 59.640 42.308 15.93 3.24 41.46 1.75
3249 3393 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
3250 3394 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
3251 3395 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
3252 3396 1.924524 ACGCGAATGACTTATTCACCG 59.075 47.619 15.93 0.00 44.42 4.94
3253 3397 2.190161 CGCGAATGACTTATTCACCGA 58.810 47.619 0.00 0.00 44.42 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 3.073062 GCTGATAATTTCTCCAGGGGCTA 59.927 47.826 0.00 0.00 0.00 3.93
80 81 3.484407 CTGCTGATAATTTCTCCAGGGG 58.516 50.000 0.00 0.00 0.00 4.79
81 82 2.883386 GCTGCTGATAATTTCTCCAGGG 59.117 50.000 0.00 0.00 0.00 4.45
82 83 2.883386 GGCTGCTGATAATTTCTCCAGG 59.117 50.000 0.00 0.00 0.00 4.45
83 84 2.883386 GGGCTGCTGATAATTTCTCCAG 59.117 50.000 0.00 0.00 0.00 3.86
84 85 2.423373 GGGGCTGCTGATAATTTCTCCA 60.423 50.000 0.00 0.00 0.00 3.86
85 86 2.234143 GGGGCTGCTGATAATTTCTCC 58.766 52.381 0.00 0.00 0.00 3.71
86 87 2.234143 GGGGGCTGCTGATAATTTCTC 58.766 52.381 0.00 0.00 0.00 2.87
87 88 1.477558 CGGGGGCTGCTGATAATTTCT 60.478 52.381 0.00 0.00 0.00 2.52
88 89 0.954452 CGGGGGCTGCTGATAATTTC 59.046 55.000 0.00 0.00 0.00 2.17
89 90 1.109323 GCGGGGGCTGCTGATAATTT 61.109 55.000 0.00 0.00 32.24 1.82
90 91 1.529244 GCGGGGGCTGCTGATAATT 60.529 57.895 0.00 0.00 32.24 1.40
91 92 2.113986 GCGGGGGCTGCTGATAAT 59.886 61.111 0.00 0.00 32.24 1.28
92 93 2.491770 TTTGCGGGGGCTGCTGATAA 62.492 55.000 0.00 0.00 36.58 1.75
93 94 2.491770 TTTTGCGGGGGCTGCTGATA 62.492 55.000 0.00 0.00 36.58 2.15
94 95 3.884704 TTTTGCGGGGGCTGCTGAT 62.885 57.895 0.00 0.00 36.58 2.90
95 96 4.594854 TTTTGCGGGGGCTGCTGA 62.595 61.111 0.00 0.00 36.58 4.26
96 97 3.614698 TTTTTGCGGGGGCTGCTG 61.615 61.111 0.00 0.00 36.58 4.41
115 116 9.415544 GTGTGATTGCTGATAATTTCTCTTTTT 57.584 29.630 0.00 0.00 0.00 1.94
116 117 8.579006 TGTGTGATTGCTGATAATTTCTCTTTT 58.421 29.630 0.00 0.00 0.00 2.27
117 118 8.025445 GTGTGTGATTGCTGATAATTTCTCTTT 58.975 33.333 0.00 0.00 0.00 2.52
118 119 7.392673 AGTGTGTGATTGCTGATAATTTCTCTT 59.607 33.333 0.00 0.00 0.00 2.85
119 120 6.883217 AGTGTGTGATTGCTGATAATTTCTCT 59.117 34.615 0.00 0.00 0.00 3.10
120 121 7.081526 AGTGTGTGATTGCTGATAATTTCTC 57.918 36.000 0.00 0.00 0.00 2.87
121 122 6.094603 GGAGTGTGTGATTGCTGATAATTTCT 59.905 38.462 0.00 0.00 0.00 2.52
122 123 6.127925 TGGAGTGTGTGATTGCTGATAATTTC 60.128 38.462 0.00 0.00 0.00 2.17
123 124 5.711506 TGGAGTGTGTGATTGCTGATAATTT 59.288 36.000 0.00 0.00 0.00 1.82
124 125 5.255687 TGGAGTGTGTGATTGCTGATAATT 58.744 37.500 0.00 0.00 0.00 1.40
125 126 4.847198 TGGAGTGTGTGATTGCTGATAAT 58.153 39.130 0.00 0.00 0.00 1.28
126 127 4.284829 TGGAGTGTGTGATTGCTGATAA 57.715 40.909 0.00 0.00 0.00 1.75
127 128 3.979101 TGGAGTGTGTGATTGCTGATA 57.021 42.857 0.00 0.00 0.00 2.15
128 129 2.865119 TGGAGTGTGTGATTGCTGAT 57.135 45.000 0.00 0.00 0.00 2.90
129 130 2.104622 TCTTGGAGTGTGTGATTGCTGA 59.895 45.455 0.00 0.00 0.00 4.26
130 131 2.497138 TCTTGGAGTGTGTGATTGCTG 58.503 47.619 0.00 0.00 0.00 4.41
131 132 2.936919 TCTTGGAGTGTGTGATTGCT 57.063 45.000 0.00 0.00 0.00 3.91
132 133 3.066621 TGTTTCTTGGAGTGTGTGATTGC 59.933 43.478 0.00 0.00 0.00 3.56
133 134 4.898829 TGTTTCTTGGAGTGTGTGATTG 57.101 40.909 0.00 0.00 0.00 2.67
134 135 5.593909 TCATTGTTTCTTGGAGTGTGTGATT 59.406 36.000 0.00 0.00 0.00 2.57
135 136 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
136 137 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
137 138 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
138 139 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
139 140 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
140 141 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
141 142 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
142 143 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
143 144 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
144 145 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
145 146 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
164 165 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
165 166 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
166 167 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
167 168 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
168 169 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
169 170 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
170 171 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
171 172 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
172 173 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
173 174 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
174 175 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
175 176 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
176 177 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
177 178 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
178 179 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
179 180 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
180 181 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
181 182 4.805719 ACATCTATGTAGTGTCATGCAACG 59.194 41.667 0.00 0.00 39.68 4.10
182 183 6.238211 GGAACATCTATGTAGTGTCATGCAAC 60.238 42.308 0.00 0.00 40.80 4.17
183 184 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
184 185 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
185 186 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
186 187 8.031864 GGATAGGAACATCTATGTAGTGTCATG 58.968 40.741 0.00 0.00 40.80 3.07
187 188 7.730332 TGGATAGGAACATCTATGTAGTGTCAT 59.270 37.037 0.00 0.00 40.80 3.06
188 189 7.066781 TGGATAGGAACATCTATGTAGTGTCA 58.933 38.462 0.00 0.00 40.80 3.58
189 190 7.526142 TGGATAGGAACATCTATGTAGTGTC 57.474 40.000 0.00 0.00 40.80 3.67
190 191 8.497910 AATGGATAGGAACATCTATGTAGTGT 57.502 34.615 0.00 0.00 40.80 3.55
194 195 9.782900 TCCATAATGGATAGGAACATCTATGTA 57.217 33.333 0.00 0.00 42.67 2.29
195 196 8.685257 TCCATAATGGATAGGAACATCTATGT 57.315 34.615 0.00 0.00 42.67 2.29
210 211 9.615660 AGATTATGTTACTACCTCCATAATGGA 57.384 33.333 8.10 0.00 45.98 3.41
214 215 9.543231 CCCTAGATTATGTTACTACCTCCATAA 57.457 37.037 0.00 0.00 35.09 1.90
215 216 8.908095 TCCCTAGATTATGTTACTACCTCCATA 58.092 37.037 0.00 0.00 0.00 2.74
216 217 7.776745 TCCCTAGATTATGTTACTACCTCCAT 58.223 38.462 0.00 0.00 0.00 3.41
217 218 7.170554 TCCCTAGATTATGTTACTACCTCCA 57.829 40.000 0.00 0.00 0.00 3.86
218 219 7.729431 ACTTCCCTAGATTATGTTACTACCTCC 59.271 40.741 0.00 0.00 0.00 4.30
219 220 8.578151 CACTTCCCTAGATTATGTTACTACCTC 58.422 40.741 0.00 0.00 0.00 3.85
220 221 8.066247 ACACTTCCCTAGATTATGTTACTACCT 58.934 37.037 0.00 0.00 0.00 3.08
221 222 8.142551 CACACTTCCCTAGATTATGTTACTACC 58.857 40.741 0.00 0.00 0.00 3.18
222 223 8.693625 ACACACTTCCCTAGATTATGTTACTAC 58.306 37.037 0.00 0.00 0.00 2.73
223 224 8.834004 ACACACTTCCCTAGATTATGTTACTA 57.166 34.615 0.00 0.00 0.00 1.82
224 225 7.735326 ACACACTTCCCTAGATTATGTTACT 57.265 36.000 0.00 0.00 0.00 2.24
225 226 9.530633 CTTACACACTTCCCTAGATTATGTTAC 57.469 37.037 0.00 0.00 0.00 2.50
226 227 9.263446 ACTTACACACTTCCCTAGATTATGTTA 57.737 33.333 0.00 0.00 0.00 2.41
227 228 8.147244 ACTTACACACTTCCCTAGATTATGTT 57.853 34.615 0.00 0.00 0.00 2.71
228 229 7.735326 ACTTACACACTTCCCTAGATTATGT 57.265 36.000 0.00 0.00 0.00 2.29
229 230 9.530633 GTAACTTACACACTTCCCTAGATTATG 57.469 37.037 0.00 0.00 0.00 1.90
230 231 9.490083 AGTAACTTACACACTTCCCTAGATTAT 57.510 33.333 1.79 0.00 0.00 1.28
231 232 8.890410 AGTAACTTACACACTTCCCTAGATTA 57.110 34.615 1.79 0.00 0.00 1.75
232 233 7.793948 AGTAACTTACACACTTCCCTAGATT 57.206 36.000 1.79 0.00 0.00 2.40
233 234 7.068470 GCTAGTAACTTACACACTTCCCTAGAT 59.932 40.741 1.79 0.00 0.00 1.98
234 235 6.376581 GCTAGTAACTTACACACTTCCCTAGA 59.623 42.308 1.79 0.00 0.00 2.43
235 236 6.377712 AGCTAGTAACTTACACACTTCCCTAG 59.622 42.308 1.79 0.00 0.00 3.02
236 237 6.251471 AGCTAGTAACTTACACACTTCCCTA 58.749 40.000 1.79 0.00 0.00 3.53
237 238 5.085219 AGCTAGTAACTTACACACTTCCCT 58.915 41.667 1.79 0.00 0.00 4.20
238 239 5.402997 AGCTAGTAACTTACACACTTCCC 57.597 43.478 1.79 0.00 0.00 3.97
239 240 8.033626 ACATAAGCTAGTAACTTACACACTTCC 58.966 37.037 1.79 0.00 32.67 3.46
240 241 8.983307 ACATAAGCTAGTAACTTACACACTTC 57.017 34.615 1.79 0.00 32.67 3.01
241 242 9.420551 GAACATAAGCTAGTAACTTACACACTT 57.579 33.333 1.79 4.31 32.67 3.16
242 243 8.804204 AGAACATAAGCTAGTAACTTACACACT 58.196 33.333 1.79 0.00 32.67 3.55
243 244 8.983307 AGAACATAAGCTAGTAACTTACACAC 57.017 34.615 1.79 0.00 32.67 3.82
256 257 9.595823 GGTTACAATGAGTAAGAACATAAGCTA 57.404 33.333 0.00 0.00 43.06 3.32
257 258 8.100791 TGGTTACAATGAGTAAGAACATAAGCT 58.899 33.333 0.00 0.00 43.06 3.74
258 259 8.263940 TGGTTACAATGAGTAAGAACATAAGC 57.736 34.615 0.00 0.00 43.06 3.09
259 260 8.391106 GCTGGTTACAATGAGTAAGAACATAAG 58.609 37.037 0.00 0.00 43.06 1.73
260 261 7.335924 GGCTGGTTACAATGAGTAAGAACATAA 59.664 37.037 0.00 0.00 43.06 1.90
261 262 6.821665 GGCTGGTTACAATGAGTAAGAACATA 59.178 38.462 0.00 0.00 43.06 2.29
262 263 5.648092 GGCTGGTTACAATGAGTAAGAACAT 59.352 40.000 0.00 0.00 43.06 2.71
263 264 5.001232 GGCTGGTTACAATGAGTAAGAACA 58.999 41.667 0.00 0.00 43.06 3.18
264 265 5.246307 AGGCTGGTTACAATGAGTAAGAAC 58.754 41.667 0.00 0.00 43.06 3.01
265 266 5.499004 AGGCTGGTTACAATGAGTAAGAA 57.501 39.130 0.00 0.00 43.06 2.52
266 267 6.614694 TTAGGCTGGTTACAATGAGTAAGA 57.385 37.500 0.00 0.00 43.06 2.10
267 268 8.204836 ACTATTAGGCTGGTTACAATGAGTAAG 58.795 37.037 0.00 0.00 43.06 2.34
268 269 8.086143 ACTATTAGGCTGGTTACAATGAGTAA 57.914 34.615 0.00 0.00 40.30 2.24
269 270 7.343574 TGACTATTAGGCTGGTTACAATGAGTA 59.656 37.037 0.00 0.00 0.00 2.59
270 271 6.156256 TGACTATTAGGCTGGTTACAATGAGT 59.844 38.462 0.00 0.00 0.00 3.41
271 272 6.480320 GTGACTATTAGGCTGGTTACAATGAG 59.520 42.308 0.00 0.00 0.00 2.90
272 273 6.346096 GTGACTATTAGGCTGGTTACAATGA 58.654 40.000 0.00 0.00 0.00 2.57
273 274 5.234329 CGTGACTATTAGGCTGGTTACAATG 59.766 44.000 0.00 0.00 0.00 2.82
274 275 5.357257 CGTGACTATTAGGCTGGTTACAAT 58.643 41.667 0.00 0.00 0.00 2.71
275 276 4.382254 CCGTGACTATTAGGCTGGTTACAA 60.382 45.833 0.00 0.00 0.00 2.41
276 277 3.131577 CCGTGACTATTAGGCTGGTTACA 59.868 47.826 0.00 0.00 0.00 2.41
277 278 3.382546 TCCGTGACTATTAGGCTGGTTAC 59.617 47.826 0.00 0.00 0.00 2.50
278 279 3.634504 TCCGTGACTATTAGGCTGGTTA 58.365 45.455 0.00 0.00 0.00 2.85
279 280 2.431057 CTCCGTGACTATTAGGCTGGTT 59.569 50.000 0.00 0.00 0.00 3.67
280 281 2.032620 CTCCGTGACTATTAGGCTGGT 58.967 52.381 0.00 0.00 0.00 4.00
281 282 2.294791 CTCTCCGTGACTATTAGGCTGG 59.705 54.545 0.00 0.36 0.00 4.85
282 283 2.287909 GCTCTCCGTGACTATTAGGCTG 60.288 54.545 0.00 0.00 0.00 4.85
283 284 1.957877 GCTCTCCGTGACTATTAGGCT 59.042 52.381 0.00 0.00 0.00 4.58
284 285 1.957877 AGCTCTCCGTGACTATTAGGC 59.042 52.381 0.00 0.00 0.00 3.93
285 286 2.287909 GCAGCTCTCCGTGACTATTAGG 60.288 54.545 0.00 0.00 0.00 2.69
286 287 2.287909 GGCAGCTCTCCGTGACTATTAG 60.288 54.545 0.00 0.00 0.00 1.73
287 288 1.681793 GGCAGCTCTCCGTGACTATTA 59.318 52.381 0.00 0.00 0.00 0.98
288 289 0.461961 GGCAGCTCTCCGTGACTATT 59.538 55.000 0.00 0.00 0.00 1.73
289 290 1.395826 GGGCAGCTCTCCGTGACTAT 61.396 60.000 0.00 0.00 0.00 2.12
290 291 2.052690 GGGCAGCTCTCCGTGACTA 61.053 63.158 0.00 0.00 0.00 2.59
291 292 3.386237 GGGCAGCTCTCCGTGACT 61.386 66.667 0.00 0.00 0.00 3.41
292 293 4.459089 GGGGCAGCTCTCCGTGAC 62.459 72.222 0.00 0.00 0.00 3.67
319 320 2.590859 GAAAGATACGGCCGGGCC 60.591 66.667 31.76 28.61 46.75 5.80
320 321 2.965462 CGAAAGATACGGCCGGGC 60.965 66.667 31.76 20.04 0.00 6.13
321 322 2.079020 TAGCGAAAGATACGGCCGGG 62.079 60.000 31.76 2.28 0.00 5.73
322 323 0.663568 CTAGCGAAAGATACGGCCGG 60.664 60.000 31.76 11.88 0.00 6.13
323 324 1.276145 GCTAGCGAAAGATACGGCCG 61.276 60.000 26.86 26.86 0.00 6.13
666 675 0.106918 TCGGAGAAGAGAGGAGAGGC 60.107 60.000 0.00 0.00 0.00 4.70
794 803 1.461127 AGAAACGCACGAGCAGAATTC 59.539 47.619 5.50 0.00 42.27 2.17
796 805 1.461127 GAAGAAACGCACGAGCAGAAT 59.539 47.619 5.50 0.00 42.27 2.40
801 810 0.383124 GTGTGAAGAAACGCACGAGC 60.383 55.000 0.00 0.00 40.50 5.03
816 825 5.008980 GCTAGGTAGGTAGGTATAGGTGTG 58.991 50.000 0.00 0.00 0.00 3.82
823 832 4.185518 AGCTAGGCTAGGTAGGTAGGTAT 58.814 47.826 23.84 0.00 36.99 2.73
824 833 3.586618 GAGCTAGGCTAGGTAGGTAGGTA 59.413 52.174 24.96 0.00 39.88 3.08
885 894 2.897436 GGTAAGCGGTTAAGTACCCAG 58.103 52.381 8.93 0.00 44.70 4.45
907 943 4.155733 CGCAGGTGTATGGCGGGA 62.156 66.667 0.00 0.00 46.46 5.14
912 949 2.398554 GGTGCACGCAGGTGTATGG 61.399 63.158 11.45 0.00 46.13 2.74
1017 1077 2.435059 GCAGACGAGGAGGTTGCC 60.435 66.667 0.00 0.00 0.00 4.52
1039 1105 2.935481 TTGCACCTGAGGGGGAGG 60.935 66.667 1.42 0.00 38.59 4.30
1140 1206 1.383456 CCGTCGTTATCCCCACCGTA 61.383 60.000 0.00 0.00 0.00 4.02
1161 1227 3.173240 GAGCTCGTCGCCGTCAAC 61.173 66.667 0.00 0.00 40.39 3.18
1162 1228 4.415332 GGAGCTCGTCGCCGTCAA 62.415 66.667 7.83 0.00 40.39 3.18
1501 1573 1.742880 TCGAAGCAGTGCCATCAGC 60.743 57.895 12.58 0.00 44.14 4.26
1532 1604 0.536260 GTGATGTCTCTGCTGCTCCT 59.464 55.000 0.00 0.00 0.00 3.69
1537 1609 1.079612 TGCCGTGATGTCTCTGCTG 60.080 57.895 0.00 0.00 0.00 4.41
1603 1675 2.022195 CATGAAGTCCTCATTGCCCAG 58.978 52.381 0.00 0.00 42.46 4.45
2041 2123 0.517742 GTGCGAAAATGACCGTACGC 60.518 55.000 10.49 0.00 44.95 4.42
2153 2243 9.239002 GCGATCCACTAAGCACTTTATATATAG 57.761 37.037 0.00 0.00 0.00 1.31
2168 2258 1.470805 CGGTGATGTGCGATCCACTAA 60.471 52.381 13.32 0.00 44.92 2.24
2169 2259 0.102300 CGGTGATGTGCGATCCACTA 59.898 55.000 13.32 3.64 44.92 2.74
2250 2340 1.202486 GGACGTCCGCATCCATCTTAA 60.202 52.381 20.85 0.00 34.87 1.85
2300 2390 7.361713 GCATATAAACTACAGCCAAAAGACACA 60.362 37.037 0.00 0.00 0.00 3.72
2326 2416 3.469008 TCCCCAATTCGCAGTATACTG 57.531 47.619 25.68 25.68 46.40 2.74
2335 2425 0.738975 GGCTAACTTCCCCAATTCGC 59.261 55.000 0.00 0.00 0.00 4.70
2477 2573 7.881643 ATTGACTCGCATAGATATCTTTGTC 57.118 36.000 20.12 12.37 0.00 3.18
2617 2726 2.742053 ACGTCGCAAATAAGCAACTGAT 59.258 40.909 0.00 0.00 0.00 2.90
2691 2826 5.008613 TCAATATGAAGAAGCCATTTACCGC 59.991 40.000 0.00 0.00 0.00 5.68
2729 2864 6.598064 ACCTGCGCTCTTGTAATACTTTAATT 59.402 34.615 9.73 0.00 0.00 1.40
2758 2893 4.814234 TCAAGTATGAACGCATATGAACCC 59.186 41.667 6.97 0.00 39.09 4.11
2768 2903 6.412072 GCATGTAGAAAATCAAGTATGAACGC 59.588 38.462 0.00 0.00 39.49 4.84
2769 2904 7.637519 CAGCATGTAGAAAATCAAGTATGAACG 59.362 37.037 0.00 0.00 39.49 3.95
2799 2937 2.352715 GGGCTACTGTTCATTTTGGCAC 60.353 50.000 0.00 0.00 0.00 5.01
2879 3022 6.831976 ACCTGTGGAAATTCTGACTATATCC 58.168 40.000 0.00 0.00 0.00 2.59
2880 3023 7.595502 CGTACCTGTGGAAATTCTGACTATATC 59.404 40.741 0.00 0.00 0.00 1.63
2881 3024 7.434492 CGTACCTGTGGAAATTCTGACTATAT 58.566 38.462 0.00 0.00 0.00 0.86
2882 3025 6.682113 GCGTACCTGTGGAAATTCTGACTATA 60.682 42.308 0.00 0.00 0.00 1.31
2896 3039 1.169661 TTGCCTTTGCGTACCTGTGG 61.170 55.000 0.00 0.00 41.78 4.17
2911 3054 1.337074 TGCTTTGCTTATGTGCTTGCC 60.337 47.619 0.00 0.00 0.00 4.52
2918 3061 2.494059 AGTCGTGTGCTTTGCTTATGT 58.506 42.857 0.00 0.00 0.00 2.29
2923 3066 2.611518 GATCTAGTCGTGTGCTTTGCT 58.388 47.619 0.00 0.00 0.00 3.91
2961 3105 8.788806 ACGACAATTTGATATCTTTGGTTTGTA 58.211 29.630 2.79 0.00 0.00 2.41
2994 3138 1.486310 CAATGGTAGAGTGCCCTGCTA 59.514 52.381 0.00 0.00 0.00 3.49
2998 3142 1.834263 GACTCAATGGTAGAGTGCCCT 59.166 52.381 0.00 0.00 45.79 5.19
3001 3145 3.664107 TGTTGACTCAATGGTAGAGTGC 58.336 45.455 0.00 0.00 45.79 4.40
3002 3146 4.452455 GGTTGTTGACTCAATGGTAGAGTG 59.548 45.833 0.00 0.00 45.79 3.51
3054 3198 5.776173 ATGACTTATTCACCTAGACGGAG 57.224 43.478 0.00 0.00 36.92 4.63
3055 3199 5.220989 CGAATGACTTATTCACCTAGACGGA 60.221 44.000 0.00 0.00 44.42 4.69
3056 3200 4.976731 CGAATGACTTATTCACCTAGACGG 59.023 45.833 0.00 0.00 44.42 4.79
3057 3201 4.441415 GCGAATGACTTATTCACCTAGACG 59.559 45.833 0.00 0.00 44.42 4.18
3058 3202 5.348986 TGCGAATGACTTATTCACCTAGAC 58.651 41.667 0.00 0.00 44.42 2.59
3059 3203 5.592104 TGCGAATGACTTATTCACCTAGA 57.408 39.130 0.00 0.00 44.42 2.43
3060 3204 7.148641 ACTATGCGAATGACTTATTCACCTAG 58.851 38.462 0.00 0.00 44.42 3.02
3061 3205 7.050970 ACTATGCGAATGACTTATTCACCTA 57.949 36.000 0.00 0.00 44.42 3.08
3062 3206 5.918608 ACTATGCGAATGACTTATTCACCT 58.081 37.500 0.00 0.00 44.42 4.00
3063 3207 6.480320 AGAACTATGCGAATGACTTATTCACC 59.520 38.462 0.00 0.00 44.42 4.02
3064 3208 7.470289 AGAACTATGCGAATGACTTATTCAC 57.530 36.000 0.00 0.00 44.42 3.18
3065 3209 7.867909 CCTAGAACTATGCGAATGACTTATTCA 59.132 37.037 0.00 0.00 44.42 2.57
3066 3210 7.868415 ACCTAGAACTATGCGAATGACTTATTC 59.132 37.037 0.00 0.00 41.46 1.75
3067 3211 7.727181 ACCTAGAACTATGCGAATGACTTATT 58.273 34.615 0.00 0.00 0.00 1.40
3068 3212 7.014326 TGACCTAGAACTATGCGAATGACTTAT 59.986 37.037 0.00 0.00 0.00 1.73
3069 3213 6.320418 TGACCTAGAACTATGCGAATGACTTA 59.680 38.462 0.00 0.00 0.00 2.24
3070 3214 5.127194 TGACCTAGAACTATGCGAATGACTT 59.873 40.000 0.00 0.00 0.00 3.01
3071 3215 4.645136 TGACCTAGAACTATGCGAATGACT 59.355 41.667 0.00 0.00 0.00 3.41
3072 3216 4.933330 TGACCTAGAACTATGCGAATGAC 58.067 43.478 0.00 0.00 0.00 3.06
3073 3217 5.562890 CGATGACCTAGAACTATGCGAATGA 60.563 44.000 0.00 0.00 0.00 2.57
3074 3218 4.618912 CGATGACCTAGAACTATGCGAATG 59.381 45.833 0.00 0.00 0.00 2.67
3075 3219 4.519350 TCGATGACCTAGAACTATGCGAAT 59.481 41.667 0.00 0.00 0.00 3.34
3076 3220 3.881089 TCGATGACCTAGAACTATGCGAA 59.119 43.478 0.00 0.00 0.00 4.70
3077 3221 3.473625 TCGATGACCTAGAACTATGCGA 58.526 45.455 0.00 0.00 0.00 5.10
3078 3222 3.898517 TCGATGACCTAGAACTATGCG 57.101 47.619 0.00 0.00 0.00 4.73
3079 3223 6.216569 TCAAATCGATGACCTAGAACTATGC 58.783 40.000 0.00 0.00 0.00 3.14
3080 3224 6.364706 GCTCAAATCGATGACCTAGAACTATG 59.635 42.308 0.00 0.00 0.00 2.23
3081 3225 6.040955 TGCTCAAATCGATGACCTAGAACTAT 59.959 38.462 0.00 0.00 0.00 2.12
3082 3226 5.359860 TGCTCAAATCGATGACCTAGAACTA 59.640 40.000 0.00 0.00 0.00 2.24
3083 3227 4.160439 TGCTCAAATCGATGACCTAGAACT 59.840 41.667 0.00 0.00 0.00 3.01
3084 3228 4.433615 TGCTCAAATCGATGACCTAGAAC 58.566 43.478 0.00 0.00 0.00 3.01
3085 3229 4.736126 TGCTCAAATCGATGACCTAGAA 57.264 40.909 0.00 0.00 0.00 2.10
3086 3230 4.736126 TTGCTCAAATCGATGACCTAGA 57.264 40.909 0.00 0.00 0.00 2.43
3087 3231 5.998454 AATTGCTCAAATCGATGACCTAG 57.002 39.130 0.00 0.00 0.00 3.02
3088 3232 7.857734 TTTAATTGCTCAAATCGATGACCTA 57.142 32.000 0.00 0.00 0.00 3.08
3089 3233 6.757897 TTTAATTGCTCAAATCGATGACCT 57.242 33.333 0.00 0.00 0.00 3.85
3090 3234 9.121517 CATATTTAATTGCTCAAATCGATGACC 57.878 33.333 0.00 0.00 0.00 4.02
3091 3235 9.669353 ACATATTTAATTGCTCAAATCGATGAC 57.331 29.630 0.00 0.00 0.00 3.06
3092 3236 9.667989 CACATATTTAATTGCTCAAATCGATGA 57.332 29.630 0.00 0.00 0.00 2.92
3093 3237 9.454585 ACACATATTTAATTGCTCAAATCGATG 57.545 29.630 0.00 0.00 0.00 3.84
3139 3283 8.904834 ACTACATTCGTGTAGAAATCTAGTGAT 58.095 33.333 19.23 0.00 43.16 3.06
3140 3284 8.277490 ACTACATTCGTGTAGAAATCTAGTGA 57.723 34.615 19.23 0.00 43.16 3.41
3141 3285 8.912787 AACTACATTCGTGTAGAAATCTAGTG 57.087 34.615 19.23 0.00 43.16 2.74
3142 3286 9.570488 GAAACTACATTCGTGTAGAAATCTAGT 57.430 33.333 19.23 0.00 43.16 2.57
3143 3287 9.790389 AGAAACTACATTCGTGTAGAAATCTAG 57.210 33.333 19.23 0.00 43.16 2.43
3209 3353 7.491696 GCGTAGTTCTAGGTCAATGATTTAACT 59.508 37.037 0.00 0.00 0.00 2.24
3210 3354 7.514747 CGCGTAGTTCTAGGTCAATGATTTAAC 60.515 40.741 0.00 0.00 0.00 2.01
3211 3355 6.474427 CGCGTAGTTCTAGGTCAATGATTTAA 59.526 38.462 0.00 0.00 0.00 1.52
3212 3356 5.975344 CGCGTAGTTCTAGGTCAATGATTTA 59.025 40.000 0.00 0.00 0.00 1.40
3213 3357 4.804139 CGCGTAGTTCTAGGTCAATGATTT 59.196 41.667 0.00 0.00 0.00 2.17
3214 3358 4.097437 TCGCGTAGTTCTAGGTCAATGATT 59.903 41.667 5.77 0.00 0.00 2.57
3215 3359 3.630769 TCGCGTAGTTCTAGGTCAATGAT 59.369 43.478 5.77 0.00 0.00 2.45
3216 3360 3.011818 TCGCGTAGTTCTAGGTCAATGA 58.988 45.455 5.77 0.00 0.00 2.57
3217 3361 3.416119 TCGCGTAGTTCTAGGTCAATG 57.584 47.619 5.77 0.00 0.00 2.82
3218 3362 4.097437 TCATTCGCGTAGTTCTAGGTCAAT 59.903 41.667 5.77 0.00 0.00 2.57
3219 3363 3.441222 TCATTCGCGTAGTTCTAGGTCAA 59.559 43.478 5.77 0.00 0.00 3.18
3220 3364 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
3221 3365 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
3222 3366 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
3223 3367 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
3224 3368 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
3225 3369 6.690098 GTGAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 45.25 2.10
3226 3370 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
3227 3371 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
3228 3372 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.