AutoCloner

Multiple sequence alignment - TraesCS6B01G267500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G267500	chr6B	100.000	2809	0	0	1	2809	481091086	481088278	0.000000e+00	5188
1	TraesCS6B01G267500	chr6A	92.284	2242	91	28	626	2808	479833344	479835562	0.000000e+00	3107
2	TraesCS6B01G267500	chr6D	96.190	840	24	2	621	1452	339389032	339389871	0.000000e+00	1367
3	TraesCS6B01G267500	chr6D	93.286	849	32	5	1475	2311	339389920	339390755	0.000000e+00	1229
4	TraesCS6B01G267500	chr6D	83.402	482	45	10	2339	2807	339431817	339432276	5.600000e-112	414
5	TraesCS6B01G267500	chr3A	92.196	551	38	5	1	546	65351738	65351188	0.000000e+00	774
6	TraesCS6B01G267500	chr1D	91.667	552	39	7	1	546	492905640	492906190	0.000000e+00	758
7	TraesCS6B01G267500	chr1B	91.652	551	41	5	1	546	380642078	380641528	0.000000e+00	758
8	TraesCS6B01G267500	chr5D	91.652	551	38	6	1	546	410492661	410492114	0.000000e+00	756
9	TraesCS6B01G267500	chr5D	91.367	556	38	10	1	549	403558870	403558318	0.000000e+00	752
10	TraesCS6B01G267500	chr4D	91.455	550	43	4	1	546	409313982	409314531	0.000000e+00	752
11	TraesCS6B01G267500	chr2D	91.455	550	43	4	1	546	623305568	623306117	0.000000e+00	752
12	TraesCS6B01G267500	chr2D	90.751	173	15	1	1531	1702	506941913	506941741	2.180000e-56	230
13	TraesCS6B01G267500	chr2D	81.338	284	44	7	1172	1452	506942300	506942023	3.640000e-54	222
14	TraesCS6B01G267500	chr2B	91.289	551	42	6	1	545	801147397	801146847	0.000000e+00	747
15	TraesCS6B01G267500	chr2B	80.851	282	49	3	1172	1452	594983382	594983105	1.690000e-52	217
16	TraesCS6B01G267500	chr4A	90.991	555	42	5	1	551	704159042	704158492	0.000000e+00	741
17	TraesCS6B01G267500	chr2A	91.279	172	15	0	1531	1702	651752933	651752762	4.680000e-58	235
18	TraesCS6B01G267500	chr2A	80.565	283	48	5	1172	1452	651753339	651753062	7.880000e-51	211

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G267500	chr6B	481088278	481091086	2808	True	5188	5188	100.0000	1	2809	1	chr6B.!!$R1	2808
1	TraesCS6B01G267500	chr6A	479833344	479835562	2218	False	3107	3107	92.2840	626	2808	1	chr6A.!!$F1	2182
2	TraesCS6B01G267500	chr6D	339389032	339390755	1723	False	1298	1367	94.7380	621	2311	2	chr6D.!!$F2	1690
3	TraesCS6B01G267500	chr3A	65351188	65351738	550	True	774	774	92.1960	1	546	1	chr3A.!!$R1	545
4	TraesCS6B01G267500	chr1D	492905640	492906190	550	False	758	758	91.6670	1	546	1	chr1D.!!$F1	545
5	TraesCS6B01G267500	chr1B	380641528	380642078	550	True	758	758	91.6520	1	546	1	chr1B.!!$R1	545
6	TraesCS6B01G267500	chr5D	410492114	410492661	547	True	756	756	91.6520	1	546	1	chr5D.!!$R2	545
7	TraesCS6B01G267500	chr5D	403558318	403558870	552	True	752	752	91.3670	1	549	1	chr5D.!!$R1	548
8	TraesCS6B01G267500	chr4D	409313982	409314531	549	False	752	752	91.4550	1	546	1	chr4D.!!$F1	545
9	TraesCS6B01G267500	chr2D	623305568	623306117	549	False	752	752	91.4550	1	546	1	chr2D.!!$F1	545
10	TraesCS6B01G267500	chr2D	506941741	506942300	559	True	226	230	86.0445	1172	1702	2	chr2D.!!$R1	530
11	TraesCS6B01G267500	chr2B	801146847	801147397	550	True	747	747	91.2890	1	545	1	chr2B.!!$R2	544
12	TraesCS6B01G267500	chr4A	704158492	704159042	550	True	741	741	90.9910	1	551	1	chr4A.!!$R1	550
13	TraesCS6B01G267500	chr2A	651752762	651753339	577	True	223	235	85.9220	1172	1702	2	chr2A.!!$R1	530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
161	162	0.108662	ATCGTGAGCTGCGTGATTGA	60.109	50.0	0.0	0.0	0.0	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1868	1975	1.531739	TTCTGCACGATTTTGCCCCC	61.532	55.0	0.0	0.0	42.25	5.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
63	64	3.487711	GCGTGATGACAGTATCTTCGACT	60.488	47.826	0.00	0.00	34.82	4.18
161	162	0.108662	ATCGTGAGCTGCGTGATTGA	60.109	50.000	0.00	0.00	0.00	2.57
202	203	0.593128	AATGACTTGGTTGAGCACGC	59.407	50.000	0.00	0.00	0.00	5.34
281	284	9.541143	AAGACAATTTCGATTTGGTTGTAAAAT	57.459	25.926	11.83	0.00	33.55	1.82
394	403	2.990977	GGGCATTTTAACCCTGGCT	58.009	52.632	0.00	0.00	43.36	4.75
480	489	1.677552	GGACACGACCCCATTGTCT	59.322	57.895	0.00	0.00	39.72	3.41
501	510	2.649531	ACCCAAACGGACAGAATTCA	57.350	45.000	8.44	0.00	34.64	2.57
541	550	1.448893	GGGTCGCGCATTGGAGTTA	60.449	57.895	8.75	0.00	0.00	2.24
546	555	1.766143	CGCGCATTGGAGTTAGCCTC	61.766	60.000	8.75	0.00	39.67	4.70
551	560	2.002586	CATTGGAGTTAGCCTCACGTG	58.997	52.381	9.94	9.94	42.40	4.49
552	561	1.334160	TTGGAGTTAGCCTCACGTGA	58.666	50.000	18.88	18.88	42.40	4.35
553	562	1.334160	TGGAGTTAGCCTCACGTGAA	58.666	50.000	20.49	0.91	42.40	3.18
554	563	1.689813	TGGAGTTAGCCTCACGTGAAA	59.310	47.619	20.49	8.05	42.40	2.69
555	564	2.301870	TGGAGTTAGCCTCACGTGAAAT	59.698	45.455	20.49	10.59	42.40	2.17
556	565	2.673368	GGAGTTAGCCTCACGTGAAATG	59.327	50.000	20.49	11.93	42.40	2.32
557	566	3.585862	GAGTTAGCCTCACGTGAAATGA	58.414	45.455	20.49	2.70	40.17	2.57
558	567	4.184629	GAGTTAGCCTCACGTGAAATGAT	58.815	43.478	20.49	12.03	40.17	2.45
559	568	3.935203	AGTTAGCCTCACGTGAAATGATG	59.065	43.478	20.49	6.48	0.00	3.07
560	569	2.768253	AGCCTCACGTGAAATGATGA	57.232	45.000	20.49	0.00	0.00	2.92
561	570	3.272574	AGCCTCACGTGAAATGATGAT	57.727	42.857	20.49	0.00	0.00	2.45
562	571	3.614092	AGCCTCACGTGAAATGATGATT	58.386	40.909	20.49	0.00	0.00	2.57
563	572	3.376234	AGCCTCACGTGAAATGATGATTG	59.624	43.478	20.49	3.42	0.00	2.67
564	573	3.374988	GCCTCACGTGAAATGATGATTGA	59.625	43.478	20.49	0.00	0.00	2.57
565	574	4.036027	GCCTCACGTGAAATGATGATTGAT	59.964	41.667	20.49	0.00	0.00	2.57
566	575	5.507974	CCTCACGTGAAATGATGATTGATG	58.492	41.667	20.49	2.21	0.00	3.07
567	576	5.295045	CCTCACGTGAAATGATGATTGATGA	59.705	40.000	20.49	0.00	0.00	2.92
568	577	6.110543	TCACGTGAAATGATGATTGATGAC	57.889	37.500	17.62	0.00	0.00	3.06
569	578	4.959757	CACGTGAAATGATGATTGATGACG	59.040	41.667	10.90	0.00	0.00	4.35
570	579	4.869861	ACGTGAAATGATGATTGATGACGA	59.130	37.500	0.00	0.00	0.00	4.20
571	580	5.351189	ACGTGAAATGATGATTGATGACGAA	59.649	36.000	0.00	0.00	0.00	3.85
572	581	5.674148	CGTGAAATGATGATTGATGACGAAC	59.326	40.000	0.00	0.00	0.00	3.95
573	582	6.456047	CGTGAAATGATGATTGATGACGAACT	60.456	38.462	0.00	0.00	0.00	3.01
574	583	6.685828	GTGAAATGATGATTGATGACGAACTG	59.314	38.462	0.00	0.00	0.00	3.16
575	584	4.808077	ATGATGATTGATGACGAACTGC	57.192	40.909	0.00	0.00	0.00	4.40
576	585	3.598299	TGATGATTGATGACGAACTGCA	58.402	40.909	0.00	0.00	0.00	4.41
577	586	4.193865	TGATGATTGATGACGAACTGCAT	58.806	39.130	0.00	0.00	0.00	3.96
578	587	4.271776	TGATGATTGATGACGAACTGCATC	59.728	41.667	0.00	0.00	40.92	3.91
579	588	2.938451	TGATTGATGACGAACTGCATCC	59.062	45.455	0.00	0.00	40.05	3.51
580	589	1.358877	TTGATGACGAACTGCATCCG	58.641	50.000	0.00	0.00	40.05	4.18
581	590	0.460109	TGATGACGAACTGCATCCGG	60.460	55.000	0.00	0.00	40.05	5.14
582	591	0.179111	GATGACGAACTGCATCCGGA	60.179	55.000	6.61	6.61	35.91	5.14
583	592	0.460284	ATGACGAACTGCATCCGGAC	60.460	55.000	6.12	0.00	0.00	4.79
584	593	1.080093	GACGAACTGCATCCGGACA	60.080	57.895	6.12	0.00	0.00	4.02
585	594	1.078759	GACGAACTGCATCCGGACAG	61.079	60.000	18.05	18.05	39.86	3.51
586	595	2.456119	CGAACTGCATCCGGACAGC	61.456	63.158	20.71	20.71	37.42	4.40
587	596	2.434884	AACTGCATCCGGACAGCG	60.435	61.111	19.24	17.22	37.42	5.18
603	612	4.712425	CGCGGTCCGGACTCGTTT	62.712	66.667	31.94	0.00	33.95	3.60
604	613	3.110178	GCGGTCCGGACTCGTTTG	61.110	66.667	31.94	19.06	33.95	2.93
605	614	3.110178	CGGTCCGGACTCGTTTGC	61.110	66.667	32.52	14.08	33.95	3.68
606	615	3.110178	GGTCCGGACTCGTTTGCG	61.110	66.667	32.52	0.00	39.92	4.85
610	619	3.467119	CGGACTCGTTTGCGGACG	61.467	66.667	5.42	5.42	44.06	4.79
612	621	2.370393	GGACTCGTTTGCGGACGAC	61.370	63.158	9.90	2.78	46.09	4.34
613	622	2.704193	GACTCGTTTGCGGACGACG	61.704	63.158	9.90	5.79	46.09	5.12
891	910	0.179181	CACGCATTCCACACTGCATC	60.179	55.000	0.00	0.00	38.30	3.91
892	911	1.061411	CGCATTCCACACTGCATCG	59.939	57.895	0.00	0.00	38.30	3.84
963	982	4.026744	CAAGAACACTCTCCCTCCATAGA	58.973	47.826	0.00	0.00	0.00	1.98
1469	1523	1.202533	CGTTTCCTATGCCACCTCGAT	60.203	52.381	0.00	0.00	0.00	3.59
1862	1969	3.976375	CGTCGATCATGGCGCGTG	61.976	66.667	8.43	2.71	0.00	5.34
1914	2021	2.202479	GCAGGGATTTTGTCGCGC	60.202	61.111	0.00	0.00	44.02	6.86
2011	2132	3.268603	CGTGCGCCTGTGACACAA	61.269	61.111	10.02	0.00	33.89	3.33
2329	2457	3.452990	TGATTTGTACTGGCCTTCGGATA	59.547	43.478	3.32	0.00	0.00	2.59
2335	2463	1.968050	CTGGCCTTCGGATAACGGGT	61.968	60.000	3.32	0.00	44.45	5.28
2343	2471	4.382362	CCTTCGGATAACGGGTTAAGAACT	60.382	45.833	0.00	0.00	44.45	3.01
2386	2514	3.181503	CGGCAGGATCTCATGTTCTTTTG	60.182	47.826	0.00	0.00	0.00	2.44
2391	2519	4.643784	AGGATCTCATGTTCTTTTGGCATC	59.356	41.667	0.00	0.00	0.00	3.91
2394	2522	3.760151	TCTCATGTTCTTTTGGCATCCAG	59.240	43.478	0.00	0.00	33.81	3.86
2424	2552	1.282382	ACGGGTTACCTGCATTACCT	58.718	50.000	10.61	0.00	32.02	3.08
2479	2611	7.248437	CCGTTTAGTTTCTCTTTTCACTGTTT	58.752	34.615	0.00	0.00	0.00	2.83
2485	2617	3.884895	TCTCTTTTCACTGTTTGGCTCA	58.115	40.909	0.00	0.00	0.00	4.26
2542	2674	1.808390	GTGGGAACGGTCGAATCGG	60.808	63.158	1.76	0.00	0.00	4.18
2543	2675	2.277591	TGGGAACGGTCGAATCGGT	61.278	57.895	1.76	6.99	0.00	4.69
2555	2698	0.389948	GAATCGGTTGTCAGGCTCGT	60.390	55.000	0.00	0.00	0.00	4.18
2576	2719	0.099082	GCGTACAGAGGAGAGGAACG	59.901	60.000	0.00	0.00	0.00	3.95
2599	2742	2.027314	CCGAGCTGATGCGAGGAG	59.973	66.667	0.00	0.00	45.42	3.69
2607	2750	4.741239	ATGCGAGGAGGGGGTGGT	62.741	66.667	0.00	0.00	0.00	4.16
2617	2760	4.459089	GGGGTGGTGAGAGCTCGC	62.459	72.222	10.93	10.93	39.26	5.03
2714	2859	1.078214	TCCTGCTGATTCCTTGCCG	60.078	57.895	0.00	0.00	0.00	5.69
2728	2873	4.962836	GCCGCCATCTCCCCCATG	62.963	72.222	0.00	0.00	0.00	3.66
2736	2881	2.049627	ATCTCCCCCATGCGCTCTTC	62.050	60.000	9.73	0.00	0.00	2.87
2740	2885	2.185350	CCCATGCGCTCTTCGTCT	59.815	61.111	9.73	0.00	41.07	4.18
2742	2887	2.226896	CCATGCGCTCTTCGTCTCG	61.227	63.158	9.73	0.00	41.07	4.04
2752	2897	1.472276	CTTCGTCTCGGGCGATTTCG	61.472	60.000	2.76	0.00	38.21	3.46
2754	2899	2.222217	CGTCTCGGGCGATTTCGTC	61.222	63.158	1.55	0.00	44.28	4.20
2781	2926	0.321564	AGCAGGTAAGCAACGCATCA	60.322	50.000	0.00	0.00	36.85	3.07
2788	2933	1.091771	AAGCAACGCATCATCTCCGG	61.092	55.000	0.00	0.00	0.00	5.14
2795	2940	1.368950	CATCATCTCCGGTCGGCAT	59.631	57.895	0.00	0.00	34.68	4.40
2808	2953	3.186047	GGCATTGGACGACGACGG	61.186	66.667	12.58	0.00	44.46	4.79

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
161	162	9.246670	TCATTTTGAAGATCCAAATGAGTATGT	57.753	29.630	12.79	0.00	36.12	2.29
202	203	0.171007	GTTGCCAATGTGATCCCACG	59.829	55.000	0.00	0.00	46.06	4.94
282	285	9.471084	CCGAACCAAAATTGTTTCTACTAAAAT	57.529	29.630	2.63	0.00	28.68	1.82
288	293	6.037726	ACAACCGAACCAAAATTGTTTCTAC	58.962	36.000	2.63	0.00	29.30	2.59
293	298	6.874664	AGTTTTACAACCGAACCAAAATTGTT	59.125	30.769	0.00	0.00	35.26	2.83
394	403	1.303236	CGTTTGCCCCATCCTGTCA	60.303	57.895	0.00	0.00	0.00	3.58
480	489	4.069304	CTGAATTCTGTCCGTTTGGGTAA	58.931	43.478	7.05	0.00	37.00	2.85
501	510	1.522130	ACGGACGTTCGTTTTGCCT	60.522	52.632	18.05	0.00	40.85	4.75
533	542	1.334160	TCACGTGAGGCTAACTCCAA	58.666	50.000	15.76	0.00	46.01	3.53
541	550	2.768253	TCATCATTTCACGTGAGGCT	57.232	45.000	19.11	4.58	0.00	4.58
546	555	4.959757	CGTCATCAATCATCATTTCACGTG	59.040	41.667	9.94	9.94	0.00	4.49
551	560	5.680229	GCAGTTCGTCATCAATCATCATTTC	59.320	40.000	0.00	0.00	0.00	2.17
552	561	5.124297	TGCAGTTCGTCATCAATCATCATTT	59.876	36.000	0.00	0.00	0.00	2.32
553	562	4.637091	TGCAGTTCGTCATCAATCATCATT	59.363	37.500	0.00	0.00	0.00	2.57
554	563	4.193865	TGCAGTTCGTCATCAATCATCAT	58.806	39.130	0.00	0.00	0.00	2.45
555	564	3.598299	TGCAGTTCGTCATCAATCATCA	58.402	40.909	0.00	0.00	0.00	3.07
556	565	4.319333	GGATGCAGTTCGTCATCAATCATC	60.319	45.833	0.00	0.00	40.50	2.92
557	566	3.562973	GGATGCAGTTCGTCATCAATCAT	59.437	43.478	0.00	0.00	40.50	2.45
558	567	2.938451	GGATGCAGTTCGTCATCAATCA	59.062	45.455	0.00	0.00	40.50	2.57
559	568	2.033407	CGGATGCAGTTCGTCATCAATC	60.033	50.000	0.00	0.00	40.50	2.67
560	569	1.935873	CGGATGCAGTTCGTCATCAAT	59.064	47.619	0.00	0.00	40.50	2.57
561	570	1.358877	CGGATGCAGTTCGTCATCAA	58.641	50.000	0.00	0.00	40.50	2.57
562	571	0.460109	CCGGATGCAGTTCGTCATCA	60.460	55.000	0.00	0.00	40.50	3.07
563	572	0.179111	TCCGGATGCAGTTCGTCATC	60.179	55.000	0.00	0.00	38.60	2.92
564	573	0.460284	GTCCGGATGCAGTTCGTCAT	60.460	55.000	7.81	0.00	32.27	3.06
565	574	1.080093	GTCCGGATGCAGTTCGTCA	60.080	57.895	7.81	0.00	32.27	4.35
566	575	1.078759	CTGTCCGGATGCAGTTCGTC	61.079	60.000	7.81	0.00	0.00	4.20
567	576	1.079819	CTGTCCGGATGCAGTTCGT	60.080	57.895	7.81	0.00	0.00	3.85
568	577	2.456119	GCTGTCCGGATGCAGTTCG	61.456	63.158	22.23	0.00	35.33	3.95
569	578	2.456119	CGCTGTCCGGATGCAGTTC	61.456	63.158	25.08	10.18	35.33	3.01
570	579	2.434884	CGCTGTCCGGATGCAGTT	60.435	61.111	25.08	0.00	35.33	3.16
586	595	4.712425	AAACGAGTCCGGACCGCG	62.712	66.667	33.06	33.06	40.78	6.46
587	596	3.110178	CAAACGAGTCCGGACCGC	61.110	66.667	32.05	23.88	40.78	5.68
588	597	3.110178	GCAAACGAGTCCGGACCG	61.110	66.667	31.11	31.11	40.78	4.79
589	598	3.110178	CGCAAACGAGTCCGGACC	61.110	66.667	30.82	20.28	43.93	4.46
590	599	3.110178	CCGCAAACGAGTCCGGAC	61.110	66.667	27.67	27.67	43.20	4.79
591	600	3.296836	TCCGCAAACGAGTCCGGA	61.297	61.111	0.00	0.00	46.50	5.14
592	601	3.110178	GTCCGCAAACGAGTCCGG	61.110	66.667	0.00	0.00	43.93	5.14
593	602	3.467119	CGTCCGCAAACGAGTCCG	61.467	66.667	1.83	0.00	45.37	4.79
594	603	2.049802	TCGTCCGCAAACGAGTCC	60.050	61.111	6.47	0.00	46.02	3.85
624	633	1.234615	AAAATGAGGTGCCCACGTCG	61.235	55.000	14.16	0.00	46.03	5.12
666	675	2.351641	GCATTCATTTCAGCGTTGGACA	60.352	45.455	0.00	0.00	0.00	4.02
784	796	0.388134	CGTAGAACTGTGGTGGACGG	60.388	60.000	0.00	0.00	36.94	4.79
891	910	1.069636	GCTTTTGTCAGAGGAAGTGCG	60.070	52.381	0.00	0.00	0.00	5.34
892	911	1.949525	TGCTTTTGTCAGAGGAAGTGC	59.050	47.619	0.00	0.00	0.00	4.40
963	982	0.661020	CGCCTTGTTGGTTTCGAAGT	59.339	50.000	0.00	0.00	38.35	3.01
993	1012	2.362503	TCGTCGGCCATGAGGAGT	60.363	61.111	2.24	0.00	36.89	3.85
1469	1523	2.812836	TCCACCGACACTACAGGATA	57.187	50.000	0.00	0.00	0.00	2.59
1862	1969	3.770040	GATTTTGCCCCCACGCCC	61.770	66.667	0.00	0.00	0.00	6.13
1868	1975	1.531739	TTCTGCACGATTTTGCCCCC	61.532	55.000	0.00	0.00	42.25	5.40
1914	2021	2.359531	TGCCCAAGAAAAAGTTACACGG	59.640	45.455	0.00	0.00	0.00	4.94
2267	2395	2.753043	CATGCGGCAAAGGGAGCT	60.753	61.111	6.82	0.00	0.00	4.09
2329	2457	1.770061	TGTCCCAGTTCTTAACCCGTT	59.230	47.619	0.00	0.00	0.00	4.44
2386	2514	2.114838	GGAGATGCCCTGGATGCC	59.885	66.667	0.00	0.00	0.00	4.40
2391	2519	2.124570	CCGTTGGAGATGCCCTGG	60.125	66.667	0.00	0.00	34.97	4.45
2394	2522	0.746923	GTAACCCGTTGGAGATGCCC	60.747	60.000	0.00	0.00	34.97	5.36
2479	2611	1.071228	AGAAGCATGCGATATGAGCCA	59.929	47.619	13.01	0.00	0.00	4.75
2542	2674	2.758770	TACGCCACGAGCCTGACAAC	62.759	60.000	0.00	0.00	38.78	3.32
2543	2675	2.566570	TACGCCACGAGCCTGACAA	61.567	57.895	0.00	0.00	38.78	3.18
2555	2698	0.039180	TTCCTCTCCTCTGTACGCCA	59.961	55.000	0.00	0.00	0.00	5.69
2589	2732	3.866582	CCACCCCCTCCTCGCATC	61.867	72.222	0.00	0.00	0.00	3.91
2599	2742	3.775654	CGAGCTCTCACCACCCCC	61.776	72.222	12.85	0.00	0.00	5.40
2639	2784	0.991920	GGAGGTGACCCAATTCCTCA	59.008	55.000	0.00	0.00	45.65	3.86
2669	2814	4.867599	CGTCGGGGGCTAAGCGTC	62.868	72.222	0.00	0.00	0.00	5.19
2691	2836	2.203126	GGAATCAGCAGGAGGGCG	60.203	66.667	0.00	0.00	39.27	6.13
2727	2872	4.116328	CCCGAGACGAAGAGCGCA	62.116	66.667	11.47	0.00	46.04	6.09
2736	2881	2.202570	ACGAAATCGCCCGAGACG	60.203	61.111	2.15	10.48	44.43	4.18
2752	2897	1.927895	CTTACCTGCTGGTCATCGAC	58.072	55.000	19.71	0.00	44.78	4.20
2754	2899	0.108186	TGCTTACCTGCTGGTCATCG	60.108	55.000	19.71	7.27	44.78	3.84
2757	2902	0.602638	CGTTGCTTACCTGCTGGTCA	60.603	55.000	19.71	7.57	44.78	4.02
2763	2908	0.734889	ATGATGCGTTGCTTACCTGC	59.265	50.000	0.00	0.00	0.00	4.85
2774	2919	2.413351	CGACCGGAGATGATGCGT	59.587	61.111	9.46	0.00	41.89	5.24
2775	2920	2.355126	CCGACCGGAGATGATGCG	60.355	66.667	9.46	0.00	43.30	4.73
2776	2921	2.663188	GCCGACCGGAGATGATGC	60.663	66.667	9.46	0.00	37.50	3.91
2781	2926	2.063979	TCCAATGCCGACCGGAGAT	61.064	57.895	9.46	0.12	37.50	2.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.