Multiple sequence alignment - TraesCS6B01G267100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G267100 chr6B 100.000 3074 0 0 1 3074 480655768 480652695 0.000000e+00 5677.0
1 TraesCS6B01G267100 chr6A 87.140 2224 120 51 919 3074 480310116 480312241 0.000000e+00 2370.0
2 TraesCS6B01G267100 chr6D 90.460 1740 91 35 921 2606 340212121 340213839 0.000000e+00 2224.0
3 TraesCS6B01G267100 chr6D 89.443 341 19 6 2604 2929 340226193 340226531 6.130000e-112 414.0
4 TraesCS6B01G267100 chr6D 81.102 127 6 3 2964 3074 340226590 340226714 5.460000e-13 86.1
5 TraesCS6B01G267100 chr5A 97.366 911 23 1 1 910 534269601 534270511 0.000000e+00 1548.0
6 TraesCS6B01G267100 chr5A 92.754 69 5 0 48 116 576289279 576289211 1.950000e-17 100.0
7 TraesCS6B01G267100 chr2B 97.043 913 26 1 1 912 150887918 150888830 0.000000e+00 1535.0
8 TraesCS6B01G267100 chr1B 96.933 913 26 2 1 911 19943987 19944899 0.000000e+00 1530.0
9 TraesCS6B01G267100 chr1B 93.100 913 53 6 1 911 250676038 250675134 0.000000e+00 1328.0
10 TraesCS6B01G267100 chr1B 82.432 148 22 4 48 192 423640533 423640387 3.220000e-25 126.0
11 TraesCS6B01G267100 chr7B 95.133 904 27 1 1 904 685056810 685057696 0.000000e+00 1410.0
12 TraesCS6B01G267100 chr7B 83.891 329 30 15 584 900 292795725 292795408 3.000000e-75 292.0
13 TraesCS6B01G267100 chr7B 90.000 70 6 1 842 911 123310146 123310214 4.220000e-14 89.8
14 TraesCS6B01G267100 chr4A 94.662 918 26 4 1 914 552695596 552696494 0.000000e+00 1402.0
15 TraesCS6B01G267100 chr4A 96.862 701 20 2 1 700 571773468 571772769 0.000000e+00 1171.0
16 TraesCS6B01G267100 chr7A 80.000 140 20 4 619 750 139200805 139200944 2.520000e-16 97.1
17 TraesCS6B01G267100 chr7D 93.548 62 3 1 850 911 269702085 269702145 1.170000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G267100 chr6B 480652695 480655768 3073 True 5677.00 5677 100.0000 1 3074 1 chr6B.!!$R1 3073
1 TraesCS6B01G267100 chr6A 480310116 480312241 2125 False 2370.00 2370 87.1400 919 3074 1 chr6A.!!$F1 2155
2 TraesCS6B01G267100 chr6D 340212121 340213839 1718 False 2224.00 2224 90.4600 921 2606 1 chr6D.!!$F1 1685
3 TraesCS6B01G267100 chr6D 340226193 340226714 521 False 250.05 414 85.2725 2604 3074 2 chr6D.!!$F2 470
4 TraesCS6B01G267100 chr5A 534269601 534270511 910 False 1548.00 1548 97.3660 1 910 1 chr5A.!!$F1 909
5 TraesCS6B01G267100 chr2B 150887918 150888830 912 False 1535.00 1535 97.0430 1 912 1 chr2B.!!$F1 911
6 TraesCS6B01G267100 chr1B 19943987 19944899 912 False 1530.00 1530 96.9330 1 911 1 chr1B.!!$F1 910
7 TraesCS6B01G267100 chr1B 250675134 250676038 904 True 1328.00 1328 93.1000 1 911 1 chr1B.!!$R1 910
8 TraesCS6B01G267100 chr7B 685056810 685057696 886 False 1410.00 1410 95.1330 1 904 1 chr7B.!!$F2 903
9 TraesCS6B01G267100 chr4A 552695596 552696494 898 False 1402.00 1402 94.6620 1 914 1 chr4A.!!$F1 913
10 TraesCS6B01G267100 chr4A 571772769 571773468 699 True 1171.00 1171 96.8620 1 700 1 chr4A.!!$R1 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 471 0.183971 ACCAAACCGGGACAACATGA 59.816 50.0 6.32 0.0 40.22 3.07 F
1679 1723 0.249155 TCGAACCGGTGACTGTTGAC 60.249 55.0 8.52 0.0 37.94 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2096 0.168788 CGAGGTAGCACGTTTCGGTA 59.831 55.0 3.48 0.0 0.00 4.02 R
2960 3114 0.391793 GTCTGCCTCGGAAGGAAAGG 60.392 60.0 0.00 0.0 46.67 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 86 5.305128 ACATGGACCAAATCAACTTTGTGAT 59.695 36.000 0.00 0.00 42.29 3.06
388 397 2.683933 ATTGGAGAGGCGGTCCGT 60.684 61.111 13.94 0.00 36.82 4.69
462 471 0.183971 ACCAAACCGGGACAACATGA 59.816 50.000 6.32 0.00 40.22 3.07
525 534 2.557056 CCAGTAGTTCTCGTGGAAGTGA 59.443 50.000 10.02 0.00 38.02 3.41
648 657 3.000819 ATGAGGTCGTCGGGGCAA 61.001 61.111 0.00 0.00 0.00 4.52
678 687 2.362503 ATCGGTGGAGGAGCACGA 60.363 61.111 0.00 0.00 38.00 4.35
855 864 1.028330 AGCAACGAGGGACGACGATA 61.028 55.000 0.00 0.00 45.77 2.92
873 883 1.655484 TACCGAGCGACGTAAGATGA 58.345 50.000 0.00 0.00 40.78 2.92
1013 1028 7.442666 CACACTTCTTCTTCTATATAAAGCCCC 59.557 40.741 0.00 0.00 0.00 5.80
1014 1029 6.647067 CACTTCTTCTTCTATATAAAGCCCCG 59.353 42.308 0.00 0.00 0.00 5.73
1016 1031 6.591750 TCTTCTTCTATATAAAGCCCCGAG 57.408 41.667 0.00 0.00 0.00 4.63
1046 1062 4.039124 ACCCAGCAAGATAAACCAAAAGTG 59.961 41.667 0.00 0.00 0.00 3.16
1099 1137 3.316573 GAGCAAGTCCCTCCGGGTG 62.317 68.421 0.00 0.00 44.74 4.61
1105 1143 2.038329 TCCCTCCGGGTGGTAGTG 59.962 66.667 13.77 0.00 44.74 2.74
1110 1148 4.446413 CCGGGTGGTAGTGCCGTC 62.446 72.222 0.00 0.00 41.21 4.79
1245 1283 3.222354 AAGAGCGTGTCGGTGGTCC 62.222 63.158 0.00 0.00 37.83 4.46
1246 1284 4.736896 GAGCGTGTCGGTGGTCCC 62.737 72.222 0.00 0.00 37.83 4.46
1446 1484 0.745845 CGGCCACTTCAAGATGGAGG 60.746 60.000 2.24 0.00 38.34 4.30
1448 1486 0.620556 GCCACTTCAAGATGGAGGGA 59.379 55.000 9.49 0.00 38.34 4.20
1451 1489 2.484417 CCACTTCAAGATGGAGGGATCG 60.484 54.545 0.00 0.00 38.34 3.69
1476 1514 4.140599 CGCAGAGCTTCTCCGGCT 62.141 66.667 0.00 0.00 43.26 5.52
1540 1578 4.697756 CCGGAAGAGCCACCGCAA 62.698 66.667 0.00 0.00 46.59 4.85
1562 1603 0.944311 GCGACAAGAAAGCCTCGACA 60.944 55.000 0.00 0.00 0.00 4.35
1581 1622 4.680237 CGCCACCGGAGCACAAGA 62.680 66.667 9.46 0.00 0.00 3.02
1598 1639 2.554032 CAAGAAGGCGACCATGAAAAGT 59.446 45.455 0.00 0.00 0.00 2.66
1669 1710 3.598715 TGACAGCGTCGAACCGGT 61.599 61.111 0.00 0.00 39.47 5.28
1679 1723 0.249155 TCGAACCGGTGACTGTTGAC 60.249 55.000 8.52 0.00 37.94 3.18
1806 1850 3.758133 ATCATCGCCGGGGAGGAGT 62.758 63.158 34.10 21.89 45.00 3.85
2024 2071 2.815211 CACCACCACTCGCCATCG 60.815 66.667 0.00 0.00 0.00 3.84
2027 2074 4.758251 CACCACTCGCCATCGCCA 62.758 66.667 0.00 0.00 35.26 5.69
2075 2122 2.961526 ACGTGCTACCTCGATTCAAT 57.038 45.000 0.00 0.00 0.00 2.57
2080 2127 4.857588 CGTGCTACCTCGATTCAATATACC 59.142 45.833 0.00 0.00 0.00 2.73
2082 2129 5.634020 GTGCTACCTCGATTCAATATACCAC 59.366 44.000 0.00 0.00 0.00 4.16
2083 2130 5.538813 TGCTACCTCGATTCAATATACCACT 59.461 40.000 0.00 0.00 0.00 4.00
2084 2131 6.717997 TGCTACCTCGATTCAATATACCACTA 59.282 38.462 0.00 0.00 0.00 2.74
2085 2132 7.028361 GCTACCTCGATTCAATATACCACTAC 58.972 42.308 0.00 0.00 0.00 2.73
2086 2133 6.342338 ACCTCGATTCAATATACCACTACC 57.658 41.667 0.00 0.00 0.00 3.18
2087 2134 5.836898 ACCTCGATTCAATATACCACTACCA 59.163 40.000 0.00 0.00 0.00 3.25
2088 2135 6.157211 CCTCGATTCAATATACCACTACCAC 58.843 44.000 0.00 0.00 0.00 4.16
2089 2136 6.015350 CCTCGATTCAATATACCACTACCACT 60.015 42.308 0.00 0.00 0.00 4.00
2090 2137 6.745116 TCGATTCAATATACCACTACCACTG 58.255 40.000 0.00 0.00 0.00 3.66
2091 2138 6.322969 TCGATTCAATATACCACTACCACTGT 59.677 38.462 0.00 0.00 0.00 3.55
2092 2139 7.503230 TCGATTCAATATACCACTACCACTGTA 59.497 37.037 0.00 0.00 0.00 2.74
2172 2234 5.571784 ACGTGAGTGAATCCGTATAAGAA 57.428 39.130 0.00 0.00 46.97 2.52
2175 2237 5.051641 CGTGAGTGAATCCGTATAAGAAAGC 60.052 44.000 0.00 0.00 0.00 3.51
2185 2247 5.637810 TCCGTATAAGAAAGCTCTTTGTGTG 59.362 40.000 0.00 0.00 42.17 3.82
2189 2251 8.230486 CGTATAAGAAAGCTCTTTGTGTGATTT 58.770 33.333 0.00 0.00 42.17 2.17
2194 2256 4.992381 AGCTCTTTGTGTGATTTCGTAC 57.008 40.909 0.00 0.00 0.00 3.67
2195 2257 4.632153 AGCTCTTTGTGTGATTTCGTACT 58.368 39.130 0.00 0.00 0.00 2.73
2196 2258 5.779922 AGCTCTTTGTGTGATTTCGTACTA 58.220 37.500 0.00 0.00 0.00 1.82
2209 2276 6.309494 TGATTTCGTACTATTTGTCTCCGTTG 59.691 38.462 0.00 0.00 0.00 4.10
2227 2294 0.587768 TGTTCTCACGTGCAATGCAG 59.412 50.000 8.73 5.62 40.08 4.41
2230 2297 1.134075 CTCACGTGCAATGCAGCTC 59.866 57.895 8.73 0.00 40.08 4.09
2232 2299 2.281692 ACGTGCAATGCAGCTCCA 60.282 55.556 8.73 0.00 40.08 3.86
2310 2377 1.726265 GGCGTCTACCAGACTACCG 59.274 63.158 4.91 0.00 42.92 4.02
2362 2433 1.522569 GAGTTGGACCGATGGGGAG 59.477 63.158 0.00 0.00 39.97 4.30
2373 2444 1.123928 GATGGGGAGTGGAGACGAAT 58.876 55.000 0.00 0.00 0.00 3.34
2445 2520 1.001145 AGTAGGGTCCGTCTCGCTT 60.001 57.895 0.00 0.00 0.00 4.68
2601 2689 1.987807 GCATGGCTCCCTGCTCCTAA 61.988 60.000 8.62 0.00 42.39 2.69
2623 2711 5.545658 ACAATGCCAAAACTCGTACTATG 57.454 39.130 0.00 0.00 0.00 2.23
2640 2728 4.525996 ACTATGTCAGCACCATTATTGCA 58.474 39.130 0.00 0.00 42.83 4.08
2733 2834 2.440539 TCTCTGACCAAGTTTCTCGC 57.559 50.000 0.00 0.00 0.00 5.03
2734 2835 1.063806 CTCTGACCAAGTTTCTCGCG 58.936 55.000 0.00 0.00 0.00 5.87
2735 2836 0.387929 TCTGACCAAGTTTCTCGCGT 59.612 50.000 5.77 0.00 0.00 6.01
2736 2837 1.610038 TCTGACCAAGTTTCTCGCGTA 59.390 47.619 5.77 0.00 0.00 4.42
2737 2838 1.719780 CTGACCAAGTTTCTCGCGTAC 59.280 52.381 5.77 0.40 0.00 3.67
2738 2839 0.706729 GACCAAGTTTCTCGCGTACG 59.293 55.000 11.84 11.84 42.01 3.67
2739 2840 0.031178 ACCAAGTTTCTCGCGTACGT 59.969 50.000 17.90 0.00 41.18 3.57
2740 2841 1.266718 ACCAAGTTTCTCGCGTACGTA 59.733 47.619 17.90 4.68 41.18 3.57
2741 2842 2.095059 ACCAAGTTTCTCGCGTACGTAT 60.095 45.455 17.90 0.00 41.18 3.06
2742 2843 3.126858 ACCAAGTTTCTCGCGTACGTATA 59.873 43.478 17.90 1.64 41.18 1.47
2743 2844 3.479949 CCAAGTTTCTCGCGTACGTATAC 59.520 47.826 17.90 7.00 41.18 1.47
2818 2941 1.531578 CAGACGATCGAGATAGGCGAA 59.468 52.381 24.34 0.00 41.52 4.70
2820 2947 2.031857 AGACGATCGAGATAGGCGAAAC 60.032 50.000 24.34 0.00 41.52 2.78
2861 2989 0.458260 ATGATGCGCTGGTACACGTA 59.542 50.000 9.73 0.00 35.84 3.57
2915 3043 1.308047 TGGAATCTTTGCGCGCATAT 58.692 45.000 36.83 24.60 0.00 1.78
2942 3071 1.245732 GTACCGTATGGAGGCGATCT 58.754 55.000 8.33 0.00 39.21 2.75
2950 3079 0.673985 TGGAGGCGATCTAATGTCCG 59.326 55.000 0.00 0.00 0.00 4.79
2960 3114 5.389935 GCGATCTAATGTCCGAATCCATTTC 60.390 44.000 0.00 0.00 33.54 2.17
2964 3118 6.423182 TCTAATGTCCGAATCCATTTCCTTT 58.577 36.000 0.00 0.00 33.54 3.11
2974 3128 2.026262 TCCATTTCCTTTCCTTCCGAGG 60.026 50.000 0.00 0.00 45.02 4.63
3020 3193 2.815298 CGTTTGTGCCGTTCCGTGT 61.815 57.895 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 8.821686 TGATTTGGTCCATGTATGACTTAATT 57.178 30.769 0.00 0.00 0.00 1.40
80 86 6.092807 GTGTTCAATTGCAACCTTAAAACCAA 59.907 34.615 0.00 0.00 0.00 3.67
388 397 1.476085 CAACACAGCCCAAACTCACAA 59.524 47.619 0.00 0.00 0.00 3.33
462 471 2.280592 GCCGTGGGTGTCGTTCTT 60.281 61.111 0.00 0.00 0.00 2.52
521 530 1.273606 CCTTCACATGTCTCCGTCACT 59.726 52.381 0.00 0.00 0.00 3.41
525 534 1.079819 CGCCTTCACATGTCTCCGT 60.080 57.895 0.00 0.00 0.00 4.69
839 848 1.709147 CGGTATCGTCGTCCCTCGTT 61.709 60.000 0.00 0.00 40.80 3.85
855 864 0.377554 CTCATCTTACGTCGCTCGGT 59.622 55.000 0.00 0.00 44.69 4.69
873 883 3.089788 AACGCAAGGTTCCGTTTCT 57.910 47.368 0.00 0.00 44.30 2.52
912 922 4.625028 ACCCACTTTCGTTTCTACACTAC 58.375 43.478 0.00 0.00 0.00 2.73
913 923 4.557296 CGACCCACTTTCGTTTCTACACTA 60.557 45.833 0.00 0.00 0.00 2.74
914 924 3.725490 GACCCACTTTCGTTTCTACACT 58.275 45.455 0.00 0.00 0.00 3.55
915 925 2.473984 CGACCCACTTTCGTTTCTACAC 59.526 50.000 0.00 0.00 0.00 2.90
916 926 2.746269 CGACCCACTTTCGTTTCTACA 58.254 47.619 0.00 0.00 0.00 2.74
939 949 2.046411 CCTGTACACATGGGCGCA 60.046 61.111 10.83 5.70 0.00 6.09
1046 1062 1.811679 GCAGCGCTCTAGGTTGTCC 60.812 63.158 7.13 0.00 0.00 4.02
1099 1137 2.047560 GTGTGGGACGGCACTACC 60.048 66.667 0.00 0.00 34.81 3.18
1128 1166 5.532779 ACATTCTTTCTGTTCTTGTCCTTCC 59.467 40.000 0.00 0.00 0.00 3.46
1140 1178 2.519013 GGGGCTCAACATTCTTTCTGT 58.481 47.619 0.00 0.00 0.00 3.41
1345 1383 1.512996 GGTCAGAGTGTCCGTCGTCA 61.513 60.000 0.00 0.00 0.00 4.35
1448 1486 4.827087 CTCTGCGTGGCTGCCGAT 62.827 66.667 14.98 0.00 0.00 4.18
1540 1578 1.668151 GAGGCTTTCTTGTCGCGGT 60.668 57.895 6.13 0.00 0.00 5.68
1570 1611 2.048222 TCGCCTTCTTGTGCTCCG 60.048 61.111 0.00 0.00 0.00 4.63
1581 1622 1.247567 CCACTTTTCATGGTCGCCTT 58.752 50.000 0.00 0.00 32.08 4.35
1669 1710 2.661537 CGCAGGCGTCAACAGTCA 60.662 61.111 5.34 0.00 34.35 3.41
1679 1723 3.726517 CCAACTTCCACGCAGGCG 61.727 66.667 12.71 12.71 46.03 5.52
1715 1759 1.668294 CTCGGACTGCTTCACCACT 59.332 57.895 0.00 0.00 0.00 4.00
2027 2074 1.884464 CTACACGCGCCATGCTGAT 60.884 57.895 5.73 0.00 43.27 2.90
2049 2096 0.168788 CGAGGTAGCACGTTTCGGTA 59.831 55.000 3.48 0.00 0.00 4.02
2050 2097 1.080974 CGAGGTAGCACGTTTCGGT 60.081 57.895 3.48 0.00 0.00 4.69
2056 2103 2.961526 ATTGAATCGAGGTAGCACGT 57.038 45.000 11.39 0.00 0.00 4.49
2057 2104 4.857588 GGTATATTGAATCGAGGTAGCACG 59.142 45.833 5.35 5.35 0.00 5.34
2063 2110 5.836898 TGGTAGTGGTATATTGAATCGAGGT 59.163 40.000 0.00 0.00 0.00 3.85
2075 2122 8.541899 TGAAATGATACAGTGGTAGTGGTATA 57.458 34.615 0.00 0.00 31.88 1.47
2085 2132 9.236691 CGGAAATTAAATGAAATGATACAGTGG 57.763 33.333 0.00 0.00 0.00 4.00
2086 2133 9.236691 CCGGAAATTAAATGAAATGATACAGTG 57.763 33.333 0.00 0.00 0.00 3.66
2087 2134 8.966868 ACCGGAAATTAAATGAAATGATACAGT 58.033 29.630 9.46 0.00 0.00 3.55
2088 2135 9.801873 AACCGGAAATTAAATGAAATGATACAG 57.198 29.630 9.46 0.00 0.00 2.74
2137 2192 6.897259 TTCACTCACGTACAATAATAAGCC 57.103 37.500 0.00 0.00 0.00 4.35
2160 2222 6.313905 CACACAAAGAGCTTTCTTATACGGAT 59.686 38.462 0.00 0.00 0.00 4.18
2161 2223 5.637810 CACACAAAGAGCTTTCTTATACGGA 59.362 40.000 0.00 0.00 0.00 4.69
2170 2232 4.848757 ACGAAATCACACAAAGAGCTTTC 58.151 39.130 0.00 0.00 0.00 2.62
2172 2234 5.057149 AGTACGAAATCACACAAAGAGCTT 58.943 37.500 0.00 0.00 0.00 3.74
2175 2237 8.495949 ACAAATAGTACGAAATCACACAAAGAG 58.504 33.333 0.00 0.00 0.00 2.85
2185 2247 6.309737 ACAACGGAGACAAATAGTACGAAATC 59.690 38.462 0.00 0.00 0.00 2.17
2189 2251 4.771590 ACAACGGAGACAAATAGTACGA 57.228 40.909 0.00 0.00 0.00 3.43
2194 2256 4.090066 CGTGAGAACAACGGAGACAAATAG 59.910 45.833 0.00 0.00 0.00 1.73
2195 2257 3.985279 CGTGAGAACAACGGAGACAAATA 59.015 43.478 0.00 0.00 0.00 1.40
2196 2258 2.800544 CGTGAGAACAACGGAGACAAAT 59.199 45.455 0.00 0.00 0.00 2.32
2209 2276 0.727122 GCTGCATTGCACGTGAGAAC 60.727 55.000 22.23 1.13 33.79 3.01
2297 2364 4.970711 TCTATCTTCCGGTAGTCTGGTAG 58.029 47.826 8.06 4.91 40.77 3.18
2310 2377 0.667792 GCACGCCCGATCTATCTTCC 60.668 60.000 0.00 0.00 0.00 3.46
2362 2433 1.026182 TGCATGGCATTCGTCTCCAC 61.026 55.000 0.00 0.00 31.71 4.02
2601 2689 5.001232 ACATAGTACGAGTTTTGGCATTGT 58.999 37.500 0.00 0.00 0.00 2.71
2623 2711 3.788333 ACATGCAATAATGGTGCTGAC 57.212 42.857 0.00 0.00 42.69 3.51
2640 2728 3.115390 ACCTAATGGCCAGTGAGTACAT 58.885 45.455 17.71 0.00 36.63 2.29
2737 2838 3.300128 CGAAGAACGAAGCAACGTATACG 60.300 47.826 23.24 23.24 45.83 3.06
2738 2839 4.147667 CGAAGAACGAAGCAACGTATAC 57.852 45.455 8.45 0.00 45.83 1.47
2818 2941 2.279918 GACCACGTGCGTCCAGTT 60.280 61.111 20.16 0.00 0.00 3.16
2820 2947 4.337060 TCGACCACGTGCGTCCAG 62.337 66.667 22.99 14.48 40.69 3.86
2861 2989 2.438975 TCTCGCCCCGTCGTGTAT 60.439 61.111 0.00 0.00 0.00 2.29
2933 3062 2.795175 TTCGGACATTAGATCGCCTC 57.205 50.000 0.00 0.00 0.00 4.70
2942 3071 5.592688 GGAAAGGAAATGGATTCGGACATTA 59.407 40.000 0.00 0.00 39.05 1.90
2950 3079 4.270008 TCGGAAGGAAAGGAAATGGATTC 58.730 43.478 0.00 0.00 37.31 2.52
2960 3114 0.391793 GTCTGCCTCGGAAGGAAAGG 60.392 60.000 0.00 0.00 46.67 3.11
2964 3118 2.683933 GGGTCTGCCTCGGAAGGA 60.684 66.667 0.00 0.00 46.67 3.36
3020 3193 3.851845 CTGTTCGGTTCCGCGTCCA 62.852 63.158 4.92 0.14 0.00 4.02
3032 3205 2.949678 CGCGGACGGATCTGTTCG 60.950 66.667 27.90 27.90 43.78 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.